Citrus Sinensis ID: 014433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKAS
Secondary Structure (PSIPRED)
cccHHHHccccHHcccHHHHHHHHHHccHHHHHHHHHcccccccEEEEEEcccccccccccEEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEEcccEEEEEEcccccccccccccccccEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEEEEEcccEEEEEEEEcccccEEEEEEcccEEEEEEcccccccccEEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccHHHHHHcccHHHHHHHHccHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEEcccccccccEEEEEEEEccccccccccHccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccccccHccccccccHHHHHcccccccEcEEEEccccccEEEEEccccEEEEEEcccccEccccccccccccccc
Coil and Loop (DISEMBL)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHalewpsltvewlpdreeppgkdysvqkmilgthtsenepnYLMLAQVqlplddsendarhydddrsdfggfgcangKVQIIQQINHdgevnrarympqnpfliatktvsAEVYVfdyskhpskppldgacspdlrlrghstegyglswskfkeghllsgsddaqiclwdinaapknkslEAMQIFKVHEGVVEDVAWHLRHEYlfgsvgddqyLLIWdlrtpsvskpvqSVVAHQsevnclafnpfnewilatgstdktvklFDLRKISTAlhtfdshkeevfqvgwnpknetiLASCCLGRRLMVWDlsrideeqtpedaedgppellfihgghtskisdfswnpcedwvisSVAEDNILQIWQMAEniyhdeddlpgdesakas
Flexible Loop (DISEMBL)
mgkdeeemrGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSkhpskppldgACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEevfqvgwnpknETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKAS
Low Complexity Region (SEG)
MGKDeeemrgeieeRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKAS
Disordered region (IsUnstruct)
**************RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLP***************I***********YLMLAQV*******************DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS*********************STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI***************LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH**************
Disordered Region (DISOPRED)
******************EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP**************************KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP*********SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE********DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH**************
Disordered Region (DISEMBL)
**********EIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE*********GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKAS
Disordered Region (DISPRO)
**********EIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDD********DDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
O22466	424	WD-40 repeat-containing p	N/A	no	0.997	0.997	0.936	0.0
O22467	424	Histone-binding protein M	yes	no	1.0	1.0	0.929	0.0
Q10G81	428	Histone-binding protein M	yes	no	0.964	0.955	0.877	0.0
Q60972	425	Histone-binding protein R	yes	no	0.971	0.969	0.671	1e-166
Q09028	425	Histone-binding protein R	yes	no	0.971	0.969	0.671	1e-166
Q3MHL3	425	Histone-binding protein R	yes	no	0.971	0.969	0.671	1e-166
Q5RF92	425	Histone-binding protein R	yes	no	0.971	0.969	0.669	1e-165
Q8AVH1	425	Histone-binding protein R	N/A	no	0.978	0.976	0.667	1e-165
Q6P315	425	Histone-binding protein R	yes	no	0.978	0.976	0.669	1e-165
Q5M7K4	425	Histone-binding protein R	no	no	0.971	0.969	0.669	1e-165

>sp|O22466|MSI1_SOLLC WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/423 (93%), Positives = 415/423 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYL +WDLRTPSV+KP+QSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKISTALHT D HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAEDNILQIWQMAENIYHDEDDLPGD++
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA 420

Query: 421 AKA 423
            K 
Sbjct: 421 PKG 423

Solanum lycopersicum (taxid: 4081)

>sp|O22467|MSI1_ARATH Histone-binding protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/424 (92%), Positives = 412/424 (97%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQ
Sbjct: 61  YSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+E
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A QIFK HEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYLLIWDLR+PS SKPVQSVVAH  EVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRK+STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT EDAE
Sbjct: 301 FDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD PG+E 
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDAPGEEP 420

Query: 421 AKAS 424
           +KAS
Sbjct: 421 SKAS 424

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair, and the fertilization independent seed (FIS) complex, a polycomb group protein complex which is required to maintain the transcriptionally repressive state of homeotic genes throughout development. Required for several aspects of plant development including normal leaf expansion, correct development of flowers, normal endosperm development, repression of parthenogenetic seed development and repression of floral homeotic genes in leaf tissue. Also required for the recruitment of chromosomal DNA into heterochromatic chromocenters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica GN=MSI1 PE=2 SV=1

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/409 (87%), Positives = 387/409 (94%)

Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           RLINEEYKIWKKNTPFLYDLVITHALEWPSLTV+WLPDR EP GKD+SVQKM+LGTHTS+
Sbjct: 19  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRAEPAGKDHSVQKMVLGTHTSD 78

Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
           NEPNYLMLAQVQLPLDD+E DARHYDDD ++ GGFG A+GKVQI+QQINHDGEVNRARYM
Sbjct: 79  NEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKVQIVQQINHDGEVNRARYM 138

Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN F+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRL+GH++EGYGLSWS FKEGHL
Sbjct: 139 PQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLKGHNSEGYGLSWSIFKEGHL 198

Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
           LSGSDDAQICLWDI A  KNK+L+A+QIFK H+GVVEDVAWHLRHEYLFGSVGDD  LLI
Sbjct: 199 LSGSDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYLFGSVGDDHNLLI 258

Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
           WDLR+P  +KPVQSV AHQ EVNCLAFNPFNEW++ATGSTDKTVKLFDLRKI T+LHTFD
Sbjct: 259 WDLRSPVSTKPVQSVAAHQGEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKIDTSLHTFD 318

Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374
            HKEEVFQVGW+PKNETILASCCLGRRLMVWDLSRID+EQTPEDAEDGPPELLFIHGGHT
Sbjct: 319 CHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQTPEDAEDGPPELLFIHGGHT 378

Query: 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAKA 423
           SKISDFSWNPCEDWVI+SVAEDNILQIWQMAENIYHDEDD+P D+ AKA
Sbjct: 379 SKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDVPTDDPAKA 427

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism such as the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/414 (67%), Positives = 333/414 (80%), Gaps = 2/414 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV 
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359
           L+DLR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDA
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           EDGPPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/414 (67%), Positives = 333/414 (80%), Gaps = 2/414 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV 
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359
           L+DLR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDA
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           EDGPPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 278/414 (67%), Positives = 333/414 (80%), Gaps = 2/414 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV 
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359
           L+DLR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDA
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           EDGPPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/414 (66%), Positives = 333/414 (80%), Gaps = 2/414 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEE+KIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    GHLLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV 
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359
           L+DLR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDA
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           EDGPPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Pongo abelii (taxid: 9601)

>sp|Q8AVH1|RBBP7_XENLA Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/418 (66%), Positives = 337/418 (80%), Gaps = 3/418 (0%)

Query: 4   DEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSV 63
           ++E     +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++
Sbjct: 3   NKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYAL 62

Query: 64  QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123
             ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +IN
Sbjct: 63  HWLVLGTHTSD-EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKIN 121

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYG
Sbjct: 122 HEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYG 181

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           LSW+    GHLLS SDD  +CLWDI+A PK  K ++A  +F  H  VVEDVAWHL HE L
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAVFTGHSAVVEDVAWHLLHESL 241

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
           FGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+D
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362
           LR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDG
Sbjct: 302 LRNLKLKLHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 361

Query: 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
           PPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE+ D+P  E
Sbjct: 362 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEEPDIPASE 419

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q6P315|RBBP7_XENTR Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/418 (66%), Positives = 337/418 (80%), Gaps = 3/418 (0%)

Query: 4   DEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSV 63
           ++E     +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++
Sbjct: 3   NKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYAL 62

Query: 64  QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN 123
             ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +IN
Sbjct: 63  HWLVLGTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKIN 121

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYG
Sbjct: 122 HEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYG 181

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           LSW+    GHLLS SDD  +CLWDI+A PK  K ++A  IF  H  VVEDVAWHL HE L
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLLHESL 241

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
           FGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+D
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 301

Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362
           LR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDG
Sbjct: 302 LRNLKLKLHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 361

Query: 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
           PPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE+ D+P  E
Sbjct: 362 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEEPDIPASE 419

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/414 (66%), Positives = 333/414 (80%), Gaps = 2/414 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           M   E      +EER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD
Sbjct: 1   MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           +S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  
Sbjct: 61  FSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEI 119

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKE 179

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRH 239
           GYGLSW+    G+LLS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL H
Sbjct: 180 GYGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           E LFGSV DDQ L+IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV 
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299

Query: 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359
           L+DLR +   LH+F+SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDA
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359

Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           EDGPPELLFIHGGHT+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
224129418	424	nucleosome/chromatin assembly factor gro	1.0	1.0	0.941	0.0
166203413	424	multicopy suppressor of IRA1 [Nicotiana	0.997	0.997	0.936	0.0
350536661	424	WD-40 repeat-containing protein MSI1 [So	0.997	0.997	0.936	0.0
319904087	422	multicopy suppressor of IRA1 [Malus x do	0.992	0.997	0.940	0.0
167593879	423	multicopy suppressor of Ira1 [Hieracium	0.997	1.0	0.917	0.0
167593885	423	multicopy suppressor of Ira1 [Hieracium	0.997	1.0	0.914	0.0
255571135	424	retinoblastoma-binding protein, putative	1.0	1.0	0.952	0.0
225465997	424	PREDICTED: WD-40 repeat-containing prote	1.0	1.0	0.950	0.0
167593889	423	multicopy suppressor of Ira1 [Hieracium	0.997	1.0	0.914	0.0
449432325	423	PREDICTED: WD-40 repeat-containing prote	0.997	1.0	0.941	0.0

>gi|224129418|ref|XP_002320581.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222861354|gb|EEE98896.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/424 (94%), Positives = 416/424 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPLDD+ENDARHYDDDRSDFGGFG ANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYDDDRSDFGGFGAANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFMIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFKEG+LLSGSDDAQICLWDIN  PKNKSL+AMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKEGYLLSGSDDAQICLWDINTTPKNKSLDAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           +LFGSVGDDQYLLIWDLRTPSV+KPV SVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 HLFGSVGDDQYLLIWDLRTPSVTKPVHSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FD+RKI+TALHTF+ HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID+EQTPEDAE
Sbjct: 301 FDIRKINTALHTFNCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDDEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAEDNILQIWQMAENIYHDEDD+P DES
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDIPADES 420

Query: 421 AKAS 424
            K S
Sbjct: 421 TKDS 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166203413|gb|ABY84675.1| multicopy suppressor of IRA1 [Nicotiana tabacum]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/423 (93%), Positives = 416/423 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQN F+IATKT+SAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNSFIIATKTISAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDDAQ CLWDINA PKNK+L+AMQIFK+HEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDAQTCLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYL IWDLRTPSV+KP+QSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLHIWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKISTALHT D HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAEDNILQIWQMAENIYHDEDDLPGD++
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA 420

Query: 421 AKA 423
            KA
Sbjct: 421 TKA 423

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536661|ref|NP_001234002.1| WD-40 repeat-containing protein MSI1 [Solanum lycopersicum] gi|3122386|sp|O22466.1|MSI1_SOLLC RecName: Full=WD-40 repeat-containing protein MSI1 gi|2394227|gb|AAB70241.1| WD-40 repeat protein [Solanum lycopersicum]

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/423 (93%), Positives = 415/423 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE+EMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct: 1   MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDD+ ICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDSHICLWDINATPKNKALEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYL +WDLRTPSV+KP+QSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKISTALHT D HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAEDNILQIWQMAENIYHDEDDLPGD++
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA 420

Query: 421 AKA 423
            K 
Sbjct: 421 PKG 423

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319904087|gb|ADV77222.1| multicopy suppressor of IRA1 [Malus x domestica]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/422 (94%), Positives = 413/422 (97%), Gaps = 1/422 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKD+EEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDDEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDR++ GGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRAEVGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTV+AEV+VFDYSKHPSKPP DGACSPDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVNAEVFVFDYSKHPSKPPXDGACSPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA  KNK+LE MQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATXKNKTLEXMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
            LFGSVGDDQYLL+WDLRTPSV+KPVQSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 NLFGSVGDDQYLLVWDLRTPSVTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKI+TALHTFD HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKINTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP +E 
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP-EEP 419

Query: 421 AK 422
           AK
Sbjct: 420 AK 421

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593879|gb|ABZ85626.1| multicopy suppressor of Ira1 [Hieracium pilosella]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/423 (91%), Positives = 413/423 (97%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DARHYDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGS GDDQYL IWDLR+PSV+KP+QSV+AHQSEVNCLAFNPFNEW+LATGSTDKTVKL
Sbjct: 241 YLFGSCGDDQYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFNPFNEWVLATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKI+TALHTFD HKEEVFQVGWNP+NETILASCCLGRRLMVWDLSRID+EQTPEDAE
Sbjct: 301 FDLRKITTALHTFDCHKEEVFQVGWNPQNETILASCCLGRRLMVWDLSRIDQEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSK+SDFSWNPCEDW+++SVAEDNILQIWQMAENIYHDEDD+P +ES
Sbjct: 361 DGPPELLFIHGGHTSKVSDFSWNPCEDWIVASVAEDNILQIWQMAENIYHDEDDMPAEES 420

Query: 421 AKA 423
             A
Sbjct: 421 RGA 423

Source: Hieracium pilosella

Species: Hieracium pilosella

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593885|gb|ABZ85629.1| multicopy suppressor of Ira1 [Hieracium piloselloides]

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/423 (91%), Positives = 413/423 (97%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DARHYDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARHYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGS GDD+YL IWDLR+PSV+KP+QSV+AHQSEVNCLAFNPFNEW+LATGSTDKTVKL
Sbjct: 241 YLFGSCGDDRYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFNPFNEWVLATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKI+TALHTFD HKEEVFQVGWNP+NETILASCCLGRRLMVWDLSRID+EQTPEDAE
Sbjct: 301 FDLRKITTALHTFDCHKEEVFQVGWNPQNETILASCCLGRRLMVWDLSRIDQEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSK+SDFSWNPCEDW+++SVAEDNILQIWQMAENIYHDEDD+P +ES
Sbjct: 361 DGPPELLFIHGGHTSKVSDFSWNPCEDWIVASVAEDNILQIWQMAENIYHDEDDMPAEES 420

Query: 421 AKA 423
             A
Sbjct: 421 RGA 423

Source: Hieracium piloselloides

Species: Hieracium piloselloides

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571135|ref|XP_002526518.1| retinoblastoma-binding protein, putative [Ricinus communis] gi|223534193|gb|EEF35909.1| retinoblastoma-binding protein, putative [Ricinus communis]

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/424 (95%), Positives = 416/424 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPP KD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPDKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPLDD+ENDARHYDDDRSD GGFG ANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARHYDDDRSDMGGFGAANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVY+FDYSKHPSKPPLDGACSPDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYLFDYSKHPSKPPLDGACSPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN+ PKNKSL+A QIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINSTPKNKSLDAFQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FD+RKI+TALHTFD HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDIRKINTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWVI+SVAEDNILQIWQMAENIYHDEDD+PGDES
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDIPGDES 420

Query: 421 AKAS 424
            K S
Sbjct: 421 NKGS 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465997|ref|XP_002265142.1| PREDICTED: WD-40 repeat-containing protein MSI1 [Vitis vinifera]

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/424 (95%), Positives = 416/424 (98%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDAR YDDDR D GGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARQYDDDRFDVGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQN F+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE
Sbjct: 121 QINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWS+FK+GHLLSGSDDAQICLWDINA PKNK+LEA QIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSQFKQGHLLSGSDDAQICLWDINATPKNKALEAQQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYLLIWDLRTPSVSKP+QSV+AHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLLIWDLRTPSVSKPIQSVIAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKI+TALHTFD HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKINTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWVI+SVAEDNILQIWQMAENIYHDEDDLPG+ES
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDLPGEES 420

Query: 421 AKAS 424
            KAS
Sbjct: 421 TKAS 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167593889|gb|ABZ85631.1| multicopy suppressor of Ira1 [Hieracium caespitosum]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/423 (91%), Positives = 412/423 (97%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKDE++MRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDR+EP GKD
Sbjct: 1   MGKDEDDMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPAGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQK+ILGTHTSENEPNYLMLAQVQLPL+D+E DAR YDDDRSDFGGFGCANGKVQIIQ
Sbjct: 61  YSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDARXYDDDRSDFGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDIN  PKNKSL+AMQIFKVH+GVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHDGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGS GDDQYL IWDLR+PSV+KP+QSV+AHQSEVNCLAFNPFNEW+LATGSTDKTVKL
Sbjct: 241 YLFGSCGDDQYLHIWDLRSPSVTKPIQSVMAHQSEVNCLAFNPFNEWVLATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKI+TALHTFD HKEEVFQVGWNP+NETILASCCLGRRLMVWDLSRID+EQTPEDAE
Sbjct: 301 FDLRKITTALHTFDCHKEEVFQVGWNPQNETILASCCLGRRLMVWDLSRIDQEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSK+SDFSWNPCEDW+++SVAEDNILQIWQMAENIYHDEDD+P +ES
Sbjct: 361 DGPPELLFIHGGHTSKVSDFSWNPCEDWIVASVAEDNILQIWQMAENIYHDEDDMPAEES 420

Query: 421 AKA 423
             A
Sbjct: 421 RGA 423

Source: Hieracium caespitosum

Species: Hieracium caespitosum

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432325|ref|XP_004133950.1| PREDICTED: WD-40 repeat-containing protein MSI1-like [Cucumis sativus] gi|449515418|ref|XP_004164746.1| PREDICTED: WD-40 repeat-containing protein MSI1-like [Cucumis sativus]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/424 (94%), Positives = 416/424 (98%), Gaps = 1/424 (0%)

Query: 1   MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
           MGKD+EEMRGE+EERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
Sbjct: 1   MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60

Query: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
           YSVQKMILGTHTSENEPNYLMLAQVQLPL+DSENDARHYDDDR+D GGFGCANGKVQIIQ
Sbjct: 61  YSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQIIQ 120

Query: 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
           QINHDGEVNRARYMPQNPF+IATKTVSAEV+VFDYSKHPSKPPLDG C+PDLRLRGH+TE
Sbjct: 121 QINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGTCNPDLRLRGHNTE 180

Query: 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
           GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNK+LEAMQIFKVHEGVVEDVAWHLRHE
Sbjct: 181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHE 240

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           YLFGSVGDDQYLL+WDLRTPS +KPVQSVVAHQSEVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct: 241 YLFGSVGDDQYLLVWDLRTPSANKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
           FDLRKISTALHTFD HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
Sbjct: 301 FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
           DGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAEDNILQIWQMAENIYHDEDDLP +E 
Sbjct: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLP-EEP 419

Query: 421 AKAS 424
            KAS
Sbjct: 420 PKAS 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2161253	424	MSI1 "MULTICOPY SUPRESSOR OF I	1.0	1.0	0.905	1.5e-218
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.938	0.936	0.685	5.6e-155
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.938	0.936	0.685	5.6e-155
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.938	0.936	0.685	5.6e-155
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.938	0.936	0.685	5.6e-155
UNIPROTKB|Q6P315	425	rbbp7 "Histone-binding protein	0.952	0.950	0.680	5.6e-155
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.938	0.936	0.685	5.6e-155
RGD|1593768	425	Rbbp4 "retinoblastoma binding	0.938	0.936	0.685	5.6e-155
UNIPROTKB|Q8AVH1	425	rbbp7 "Histone-binding protein	0.952	0.950	0.678	7.2e-155
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.964	0.962	0.669	1.9e-154

TAIR|locus:2161253 MSI1 "MULTICOPY SUPRESSOR OF IRA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
 Identities = 384/424 (90%), Positives = 402/424 (94%)

Query:     1 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD 60
             MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKD
Sbjct:     1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKD 60

Query:    61 YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ 120
             YSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQ
Sbjct:    61 YSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQ 120

Query:   121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE 180
             QINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+E
Sbjct:   121 QINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSE 180

Query:   181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240
             GYGLSWSKFK+GHLLSGSDDAQICLWDINA PKNKSL+A QIFK HEGVVEDVAWHLRHE
Sbjct:   181 GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE 240

Query:   241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
             YLFGSVGDDQYLLIWDLR+PS SKPVQSVVAH  EVNCLAFNPFNEW++ATGSTDKTVKL
Sbjct:   241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query:   301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
             FDLRK+STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT EDAE
Sbjct:   301 FDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAE 360

Query:   361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES 420
             DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD PG+E 
Sbjct:   361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDAPGEEP 420

Query:   421 AKAS 424
             +KAS
Sbjct:   421 SKAS 424

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0016568 "chromatin modification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0031507 "heterochromatin assembly" evidence=RCA;IMP

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0010026 "trichome differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0010214 "seed coat development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0045787 "positive regulation of cell cycle" evidence=IGI;RCA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IPI

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

UNIPROTKB|Q6P315 rbbp7 "Histone-binding protein RBBP7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 277/407 (68%), Positives = 331/407 (81%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+
Sbjct:    14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD 73

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYM
Sbjct:    74 -EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYM 132

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHL
Sbjct:   133 PQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNSNLSGHL 192

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  +CLWDI+A PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct:   193 LSASDDHTVCLWDISAGPKEGKVVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 252

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   253 IWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 312

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct:   313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
             T+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE+ D+P  E
Sbjct:   373 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEEPDIPASE 419

GO:0035098 "ESC/E(Z) complex" evidence=ISS

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 274/400 (68%), Positives = 328/400 (82%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0016581 "NuRD complex" evidence=IEA;ISO

GO:0016589 "NURF complex" evidence=IEA;ISO

GO:0031497 "chromatin assembly" evidence=IEA;ISO

GO:0033186 "CAF-1 complex" evidence=IEA;ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

UNIPROTKB|Q8AVH1 rbbp7 "Histone-binding protein RBBP7" [Xenopus laevis (taxid:8355)]

 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 276/407 (67%), Positives = 331/407 (81%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+
Sbjct:    14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD 73

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYM
Sbjct:    74 -EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYM 132

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  EGYGLSW+    GHL
Sbjct:   133 PQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNSNLSGHL 192

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  +CLWDI+A PK  K ++A  +F  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct:   193 LSASDDHTVCLWDISAGPKEGKVVDAKAVFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 252

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   253 IWDTRSNTTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 312

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct:   313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
             T+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE+ D+P  E
Sbjct:   373 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEEPDIPASE 419

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 276/412 (66%), Positives = 333/412 (80%)

Query:    15 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
             R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD 74

Query:    75 NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
              E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct:    75 -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133

Query:   135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
             PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    G+L
Sbjct:   134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNL 193

Query:   195 LSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
             LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct:   194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253

Query:   254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
             IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct:   254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313

Query:   314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
             +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct:   314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373

Query:   374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPG-DESAKAS 424
             T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED   G D   ++S
Sbjct:   374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDTEGGVDPEGQSS 425

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS37	HAT2_CRYNB	No assigned EC number	0.5062	0.9339	0.9103	N/A	no
P0CS36	HAT2_CRYNJ	No assigned EC number	0.5062	0.9339	0.9103	yes	no
Q09028	RBBP4_HUMAN	No assigned EC number	0.6714	0.9716	0.9694	yes	no
Q8AVH1	RBBP7_XENLA	No assigned EC number	0.6674	0.9787	0.9764	N/A	no
Q9W7I5	RBBP4_CHICK	No assigned EC number	0.6690	0.9716	0.9694	yes	no
Q4I7L0	HAT2_GIBZE	No assigned EC number	0.4624	0.9646	0.9669	yes	no
Q6INH0	RBP4B_XENLA	No assigned EC number	0.6690	0.9716	0.9694	N/A	no
O22467	MSI1_ARATH	No assigned EC number	0.9292	1.0	1.0	yes	no
O22466	MSI1_SOLLC	No assigned EC number	0.9361	0.9976	0.9976	N/A	no
Q61Y48	LIN53_CAEBR	No assigned EC number	0.6253	0.9504	0.9687	N/A	no
Q6CSI1	HAT2_KLULA	No assigned EC number	0.3873	0.8891	0.9240	yes	no
Q4R304	RBBP7_MACFA	No assigned EC number	0.6634	0.9622	0.96	N/A	no
Q3MHL3	RBBP4_BOVIN	No assigned EC number	0.6714	0.9716	0.9694	yes	no
Q75C99	HAT2_ASHGO	No assigned EC number	0.3582	0.8844	0.8865	yes	no
Q6FXI8	HAT2_CANGA	No assigned EC number	0.3828	0.8915	0.9021	yes	no
Q6P315	RBBP7_XENTR	No assigned EC number	0.6698	0.9787	0.9764	yes	no
Q60972	RBBP4_MOUSE	No assigned EC number	0.6714	0.9716	0.9694	yes	no
Q54SD4	RBBD_DICDI	No assigned EC number	0.6361	0.9693	0.9716	yes	no
Q6C7Q4	HAT2_YARLI	No assigned EC number	0.3747	0.9339	0.8761	yes	no
Q2UA71	HAT2_ASPOR	No assigned EC number	0.4830	0.9481	0.9220	yes	no
P39984	HAT2_YEAST	No assigned EC number	0.3520	0.8891	0.9401	yes	no
Q6BK34	HAT2_DEBHA	No assigned EC number	0.3657	0.9103	0.9301	yes	no
Q24572	CAF1_DROME	No assigned EC number	0.6562	0.9740	0.9604	yes	no
Q8SRK1	HAT2_ENCCU	No assigned EC number	0.3884	0.8797	0.9713	yes	no
Q4P553	HAT2_USTMA	No assigned EC number	0.5246	0.9316	0.8144	N/A	no
O94244	HAT2_SCHPO	No assigned EC number	0.4734	0.9245	0.9116	yes	no
Q10G81	MSI1_ORYSJ	No assigned EC number	0.8777	0.9646	0.9556	yes	no
Q4WEI5	HAT2_ASPFU	No assigned EC number	0.4806	0.9481	0.9220	yes	no
Q5RF92	RBBP4_PONAB	No assigned EC number	0.6690	0.9716	0.9694	yes	no
O93377	RBP4A_XENLA	No assigned EC number	0.6618	0.9716	0.9694	N/A	no
Q6P3H7	RBBP4_DANRE	No assigned EC number	0.6618	0.9716	0.9716	yes	no
P90916	LIN53_CAEEL	No assigned EC number	0.6082	0.9504	0.9664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC901 nucleosome/chromatin assembly factor group (424 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
pfam12265	73	pfam12265, CAF1C_H4-bd, Histone-binding protein RB	6e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	7e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	0.001
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex

 Score =  121 bits (305), Expect = 6e-34
 Identities = 40/73 (54%), Positives = 54/73 (73%)

Query: 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEP 77
          NEEY++WKKN PFLYD++ THALEWPSL+ +WLPD  +   +    Q+++LGT TS  E 
Sbjct: 1  NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPHTQRLLLGTQTSGQEQ 60

Query: 78 NYLMLAQVQLPLD 90
          NYL++A+V LP  
Sbjct: 61 NYLLVAKVSLPSK 73

The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (310), Expect = 4e-32
 Identities = 69/283 (24%), Positives = 111/283 (39%), Gaps = 44/283 (15%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG 181
           H G V    + P    L    T S    + V+D                   L+GH+   
Sbjct: 8   HTGGVTCVAFSPDGKLLA---TGSGDGTIKVWDLET----------GELLRTLKGHTGPV 54

Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
             ++ S      L SGS D  I LWD+      + +   +    H   V  VA+      
Sbjct: 55  RDVAASADGTY-LASGSSDKTIRLWDLE---TGECV---RTLTGHTSYVSSVAFSPDGRI 107

Query: 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301
           L  S   D+ + +WD+ T    K + ++  H   VN +AF+P     +A+ S D T+KL+
Sbjct: 108 LSSS-SRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLW 162

Query: 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361
           DLR     + T   H  EV  V ++P  E  L S      + +WDLS      T      
Sbjct: 163 DLRTGKC-VATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTGKCLGTLR---- 216

Query: 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
                     GH + ++  +++P    + S  +ED  +++W +
Sbjct: 217 ----------GHENGVNSVAFSPDGYLLASG-SEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 4e-31
 Identities = 77/308 (25%), Positives = 128/308 (41%), Gaps = 59/308 (19%)

Query: 110 GCANGKVQI---------IQQINHDGEVNRARYMPQNPFLIAT---KTVSAEVYVFDYSK 157
           G  +G +++              H G V          +L +    KT+     ++D   
Sbjct: 27  GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR----LWDLET 82

Query: 158 HPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLL-SGSDDAQICLWDINAAPKNK 215
                   G C   +R L GH++    +++S   +G +L S S D  I +WD+       
Sbjct: 83  --------GEC---VRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETG---- 125

Query: 216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275
             + +   + H   V  VA+     ++  S   D  + +WDLRT    K V ++  H  E
Sbjct: 126 --KCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRT---GKCVATLTGHTGE 179

Query: 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335
           VN +AF+P +   L + S+D T+KL+DL      L T   H+  V  V ++P    +LAS
Sbjct: 180 VNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLAS 236

Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395
                 + VWDL   +  QT           L    GHT+ ++  +W+P    + S  + 
Sbjct: 237 GSEDGTIRVWDLRTGECVQT-----------LS---GHTNSVTSLAWSPDGKRLASG-SA 281

Query: 396 DNILQIWQ 403
           D  ++IW 
Sbjct: 282 DGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (284), Expect = 2e-28
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 29/233 (12%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L+GH+     +++S      L +GS D  I +WD+       + E ++  K H G V DV
Sbjct: 5   LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLE------TGELLRTLKGHTGPVRDV 57

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
           A      YL  S   D+ + +WDL T    + V+++  H S V+ +AF+P    IL++ S
Sbjct: 58  AASADGTYLA-SGSSDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDGR-ILSSSS 112

Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            DKT+K++D+      L T   H + V  V ++P   T +AS      + +WDL      
Sbjct: 113 RDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV 170

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
            T                GHT +++  +++P  + ++SS + D  +++W ++ 
Sbjct: 171 AT--------------LTGHTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLST 208

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (275), Expect = 2e-26
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 23/245 (9%)

Query: 164 LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF 223
           L         L GHS     L++S   +      S D  I LWD+      ++ + +   
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL------RTGKPLSTL 194

Query: 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283
             H   V  +A+      L  S   D  + +WDL T    K ++S ++  S+    +F+P
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---GKLLRSTLSGHSDSVVSSFSP 251

Query: 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343
            +  +LA+GS+D T++L+DLR  S+ L T   H   V  V ++P +  +LAS      + 
Sbjct: 252 -DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVR 309

Query: 344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403
           +WDL            E G         GH   +S  S++P    ++S  ++D  +++W 
Sbjct: 310 LWDL------------ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 404 MAENI 408
           +    
Sbjct: 358 LRTGK 362

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.9 bits (211), Expect = 3e-18
 Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 36/302 (11%)

Query: 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY 182
            H   V+   + P    LIA+ +    + ++D S                 L GHS    
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST---------LSGHSDSVV 246

Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
             S+S      L SGS D  I LWD+ +     S   ++    H   V  VA+    + L
Sbjct: 247 S-SFSPDGS-LLASGSSDGTIRLWDLRS-----SSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
             S   D  + +WDL T  +   + ++  H+  V+ L+F+P    +++ GS D T++L+D
Sbjct: 300 A-SGSSDGTVRLWDLETGKLLSSL-TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362
           LR               V  V ++P +  +++S      + +WDLS              
Sbjct: 358 LRTGKPLK--TLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLST------------- 401

Query: 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDESAK 422
              LL    GHTS+++   ++P    + S  + DN +++W +  ++        G   A 
Sbjct: 402 -GSLLRNLDGHTSRVTSLDFSPDGKSLASG-SSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 423 AS 424
            S
Sbjct: 460 KS 461

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
           +  K H G V  VA+    + L  +   D  + +WDL T  +   ++++  H   V  +A
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLA-TGSGDGTIKVWDLETGEL---LRTLKGHTGPVRDVA 58

Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340
            +    + LA+GS+DKT++L+DL      + T   H   V  V ++P    IL+S    +
Sbjct: 59  ASADGTY-LASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSPDG-RILSSSSRDK 115

Query: 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400
            + VWD+       T                GHT  ++  +++P     ++S ++D  ++
Sbjct: 116 TIKVWDVETGKCLTTLR--------------GHTDWVNSVAFSPD-GTFVASSSQDGTIK 160

Query: 401 IWQMAEN 407
           +W +   
Sbjct: 161 LWDLRTG 167

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 4e-16
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 18/184 (9%)

Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
            + + HE  +  +A+    E L  S   D  + +WDL            + H S V+ LA
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLL-SGSSDGTIKLWDLDNGEKLIKSLEGL-HDSSVSKLA 116

Query: 281 FNP--FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338
            +    N  +LA+ S D TVKL+DL      + T + H E V  + ++P  + + +   L
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI 398
              + +WDL                 + L    GHT  +S  +++P    +I+S + D  
Sbjct: 177 DGTIKLWDLR--------------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222

Query: 399 LQIW 402
           +++W
Sbjct: 223 IRLW 226

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
           K ++++  H   V  +AF+P +  +LA+GS D TV+++D
Sbjct: 2   KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
           + ++++  H   V  +AF+P +   LA+GS D T+KL+D
Sbjct: 3   ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR-------KISTALHTFDSHK 317
           PV  +  H S +  L FNP    ILA+GS D T++++++        +I         HK
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDL 347
           +++  + WNP N  I+ S      + +WD+
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI 369
             T   H   V  V ++P  + +LA+      + VWDL   +  +T +            
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLK------------ 48

Query: 370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
             GHT  + D + +    ++ S  + D  +++W
Sbjct: 49  --GHTGPVRDVAASADGTYLASG-SSDKTIRLW 78

Length = 289

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374
            H   +  + +NP    ILAS      + VW++   DE  + ++ +D       I  GH 
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE--SVKEIKDP----QCILKGHK 125

Query: 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
            KIS   WNP   +++ S   D+ + IW + EN
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDI-EN 157

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
           L T   H   V  V ++P +   LAS      + +WD
Sbjct: 5   LKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)

Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           G+ W+ + +  + S + +  + +WD+    +++ +  M   K HE  V  + +      L
Sbjct: 537 GICWNSYIKSQVASSNFEGVVQVWDV---ARSQLVTEM---KEHEKRVWSIDYSSADPTL 590

Query: 243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
             S  DD  + +W +    VS      +  ++ + C+ F   +   LA GS D  V  +D
Sbjct: 591 LASGSDDGSVKLWSI-NQGVSI---GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646

Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348
           LR     L T   H + V  V +   + + L S      L +WDLS
Sbjct: 647 LRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
           L T   H   V  V ++P +  +LAS      + VWD
Sbjct: 4   LRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI--NAAPKNKSLEAMQIFKVHE 227
           P ++L+GH++    L ++      L SGS+D  I +W+I  N     +  +   I K H+
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
             +  + W+  + Y+  S G D ++ IWD+
Sbjct: 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207
           L+GH+     +++S      L SGSDD  + +WD
Sbjct: 7   LKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
PTZ00420	568	coronin; Provisional	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
PF12265	74	CAF1C_H4-bd: Histone-binding protein RBBP4 or subu	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG2321	703	consensus WD40 repeat protein [General function pr	99.73
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.73
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.67
KOG4227	609	consensus WD40 repeat protein [General function pr	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.64
PRK03629	429	tolB translocation protein TolB; Provisional	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG1963	792	consensus WD40 repeat protein [General function pr	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.53
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.44
KOG4547	541	consensus WD40 repeat-containing protein [General	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
KOG2321	703	consensus WD40 repeat protein [General function pr	99.38
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.37
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.31
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.3
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.29
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.14
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.14
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.11
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.05
KOG2314	698	consensus Translation initiation factor 3, subunit	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.03
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.01
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.99
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.99
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.95
KOG2695	425	consensus WD40 repeat protein [General function pr	98.92
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.81
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.78
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.76
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.72
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.71
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.68
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.68
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.52
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.44
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.39
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.37
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.16
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.04
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.02
COG3391	381	Uncharacterized conserved protein [Function unknow	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.9
COG3391	381	Uncharacterized conserved protein [Function unknow	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.85
KOG2314	698	consensus Translation initiation factor 3, subunit	97.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.65
PRK02888	635	nitrous-oxide reductase; Validated	97.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.58
KOG2395	644	consensus Protein involved in vacuole import and d	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.53
KOG2395	644	consensus Protein involved in vacuole import and d	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.49
KOG3621	726	consensus WD40 repeat-containing protein [General	97.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.41
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.41
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.37
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.37
KOG2444	238	consensus WD40 repeat protein [General function pr	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.23
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.14
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	97.04
PHA02713	557	hypothetical protein; Provisional	97.02
PHA02713	557	hypothetical protein; Provisional	96.96
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.94
PRK13616	591	lipoprotein LpqB; Provisional	96.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.89
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.79
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.77
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.73
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.45
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.4
PRK13616	591	lipoprotein LpqB; Provisional	96.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.29
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.27
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.23
KOG2444	238	consensus WD40 repeat protein [General function pr	96.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.11
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.93
COG5167	776	VID27 Protein involved in vacuole import and degra	95.92
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.91
PHA03098	534	kelch-like protein; Provisional	95.66
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.56
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.47
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.43
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.35
PRK10115	686	protease 2; Provisional	95.29
PHA03098	534	kelch-like protein; Provisional	95.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.06
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.51
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.25
COG5167	776	VID27 Protein involved in vacuole import and degra	94.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.19
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.15
PRK10115	686	protease 2; Provisional	94.12
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.09
KOG2247	615	consensus WD40 repeat-containing protein [General	94.09
PHA02790	480	Kelch-like protein; Provisional	93.97
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.98
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.87
PHA02790	480	Kelch-like protein; Provisional	92.74
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.67
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.55
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.49
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.34
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.17
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.03
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.97
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.51
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.5
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.44
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.38
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	90.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.29
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.18
KOG2247	615	consensus WD40 repeat-containing protein [General	90.13
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.89
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.82
PRK13684	334	Ycf48-like protein; Provisional	89.66
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.59
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.42
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.98
COG4590	733	ABC-type uncharacterized transport system, permeas	88.74
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.62
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.21
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.86
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.33
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.28
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.87
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.52
PRK13684	334	Ycf48-like protein; Provisional	86.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.31
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.84
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.44
COG5276	370	Uncharacterized conserved protein [Function unknow	84.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.84
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.47
PLN02193	470	nitrile-specifier protein	82.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	81.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.7
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.65
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.03

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=4.7e-81  Score=539.54  Aligned_cols=414  Identities=69%  Similarity=1.173  Sum_probs=386.3

Q ss_pred             CchhhhhhhhhhhhhHHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEE
Q 014433            3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML   82 (424)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i   82 (424)
                      +.|++|++.++.+.|+|+|++||||+|||||.+++|.|+||||||+|+|+.......++..|+|++||+|+++.+|+|+|
T Consensus         2 ~~~~~~~~~~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~i   81 (422)
T KOG0264|consen    2 NAEEAMDEALEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVI   81 (422)
T ss_pred             chHhhccchhccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEE
Confidence            45778888888889999999999999999999999999999999999999877777889999999999999999999999


Q ss_pred             EEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC
Q 014433           83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP  162 (424)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~  162 (424)
                      +++.+|..........++.+.+++++++...+++++.+++.|.+.|++++++|+++.++|+++..+.|+|||..+....+
T Consensus        82 A~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~  161 (422)
T KOG0264|consen   82 ASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP  161 (422)
T ss_pred             EeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc
Confidence            99999988888778888899989999988899999999999999999999999999999999999999999999987777


Q ss_pred             CCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCc
Q 014433          163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEY  241 (424)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  241 (424)
                      ...+.+.|..++.+|..+.++|+|++.....|++|+.|+.|++||++..... ..+.+...+.+|...|.+++|++....
T Consensus       162 ~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  162 KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED  241 (422)
T ss_pred             cccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh
Confidence            6555788899999999999999999999989999999999999999987663 556777889999999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEE
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF  321 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~  321 (424)
                      +|++++.|+.+.|||+|+. ..++.....+|.++|+|++|+|.+.++||||+.|++|++||+|++..++.++.+|+..|.
T Consensus       242 lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~  320 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF  320 (422)
T ss_pred             hheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE
Confidence            9999999999999999975 455677778999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433          322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI  401 (424)
Q Consensus       322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v  401 (424)
                      ++.|+|+...+||+++.|+.+.|||+......+...+.+++|++++|.+.||...|.++.|+|+.+++|+|+++|+.++|
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             EecCCccCCCCCCCCC
Q 014433          402 WQMAENIYHDEDDLPG  417 (424)
Q Consensus       402 w~~~~~~~~~~~~~~~  417 (424)
                      |++...++..++....
T Consensus       401 W~~s~~i~~~e~~~~~  416 (422)
T KOG0264|consen  401 WQMAENIYNPEDPEES  416 (422)
T ss_pred             eeccccccCccccCcc
Confidence            9999999988766543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=3.6e-47  Score=321.50  Aligned_cols=364  Identities=29%  Similarity=0.550  Sum_probs=290.5

Q ss_pred             hhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCc-eEEEEEeecCCCCCCCeEEEEEEE-CCCCCCCcccCCCCCcCCCC
Q 014433           29 PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQ-LPLDDSENDARHYDDDRSDF  106 (424)
Q Consensus        29 ~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~-~~~~~~gt~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~  106 (424)
                      |..|.+++..+..||||+++.+|+..+..+..|+ +-.++.||++.....|.|.++++. |.......+....+++....
T Consensus        57 psaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edde  136 (440)
T KOG0302|consen   57 PSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDE  136 (440)
T ss_pred             HHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccch
Confidence            7799999999999999999999999999999998 457889999999999999998885 32211111100000000000


Q ss_pred             CCCCCCCCcEEEEEEeccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCC------CCCCCCCcEEEecCCC
Q 014433          107 GGFGCANGKVQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPP------LDGACSPDLRLRGHST  179 (424)
Q Consensus       107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~------~~~~~~~~~~~~~h~~  179 (424)
                      ..   ..+++. .+.++|.+.++.++.++. +..+.|+-+..|.|+||++........      ......++.++.+|..
T Consensus       137 dD---~~P~~~-~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~  212 (440)
T KOG0302|consen  137 DD---RKPQIE-MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG  212 (440)
T ss_pred             hh---cccccc-ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc
Confidence            00   123333 567899999999999986 455888889999999999976433221      2245678899999999


Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      ..++|+|||...+.|++|..-+.|++|...++.-  .+ -...+.+|+..|.+++|+|....+|++|+.||+|+|||+|.
T Consensus       213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--~v-d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs  289 (440)
T KOG0302|consen  213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--KV-DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS  289 (440)
T ss_pred             cceeeecccccccccccCccccceEeeeeccCce--ee-cCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence            9999999998777799999999999999887532  21 12345679999999999999999999999999999999999


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--CCcceEecCCCCCEEEEEEcCCCCcEEEEEE
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      +.....+ ..++|.+.|+.|.|+..-. +||+|+.||+++|||+|..  ++|+..|+.|+.+|+++.|+|.....|++++
T Consensus       290 ~~~~~~~-~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  290 GPKKAAV-STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             CCcccee-EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence            8643333 4489999999999999887 8999999999999999963  5789999999999999999999888999999


Q ss_pred             CCCeEEEeeCCCCCcc-----cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          338 LGRRLMVWDLSRIDEE-----QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       338 ~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      .|.+|.|||+......     .......+.|++++|.++|.+ .+..+.|+++-+.++++.+.|| +.||.
T Consensus       368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccc-eeEEE
Confidence            9999999999875431     112223467899999999866 4999999999999999999999 56665

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-44  Score=303.31  Aligned_cols=251  Identities=21%  Similarity=0.429  Sum_probs=220.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +|.++|.|++|+|++. .||+|+.|.++++||+.+          ..+..+.++|...|.|++|+|+++ .||+|+.||+
T Consensus       113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~T----------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~  180 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDT----------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGS  180 (480)
T ss_pred             CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCC----------CCcceeecCCccEEEEEEECCCcc-hhhccccCCe
Confidence            6999999999999886 899999999999999998          678899999999999999999999 6999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC----CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH----EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      |++||..+++.     ....+.+|...|++++|.|-+    ..++|+++.||.++|||+..+.+   +..+.+|..+|+|
T Consensus       181 I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---~~~lsgHT~~VTC  252 (480)
T KOG0271|consen  181 IRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---VRTLSGHTASVTC  252 (480)
T ss_pred             EEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---EEEeccCccceEE
Confidence            99999988764     345578999999999998742    23788999999999999998665   7788899999999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCC----------------------------------------------------
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKI----------------------------------------------------  306 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~----------------------------------------------------  306 (424)
                      +.|--+|  +|++|+.|++|++|+....                                                    
T Consensus       253 vrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  253 VRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            9997544  7889999999999975431                                                    


Q ss_pred             --------------------------CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          307 --------------------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       307 --------------------------~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                                                .+++..+.+|..-|+.+.|||++. ++|+++.|..|++|+.+++          
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG----------  399 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG----------  399 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc----------
Confidence                                      023445667888999999999996 8999999999999999987          


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                          +.+..++||...|+.++|+.|.+ ||++|+.|.+++||++.+..+..
T Consensus       400 ----k~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  400 ----KFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             ----chhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecc
Confidence                66888999999999999999999 89999999999999999987754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.2e-44  Score=307.08  Aligned_cols=248  Identities=25%  Similarity=0.393  Sum_probs=227.0

Q ss_pred             EEEEeccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          118 IIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +....+|.+.|.++.|+|. ...-+|||+.||++++|+++.          ..++..+.+|...|..++|+|+|. +|+|
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------e~~l~~l~gH~~RVs~VafHPsG~-~L~T  278 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------ETPLQDLEGHLARVSRVAFHPSGK-FLGT  278 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------CcchhhhhcchhhheeeeecCCCc-eeee
Confidence            3456689999999999997 355799999999999999987          577888999999999999999998 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      ++.|.+-++||+++...      +....+|...|.+++|+++|. ++++|+.|..-+|||+|++.+   +..+.+|..+|
T Consensus       279 asfD~tWRlWD~~tk~E------lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~---im~L~gH~k~I  348 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETKSE------LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC---IMFLAGHIKEI  348 (459)
T ss_pred             cccccchhhcccccchh------hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcE---EEEecccccce
Confidence            99999999999988743      444678999999999999996 788999999999999999886   88889999999


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      .+|+|+|+|- .||||+.|++++|||+|. ...+.++.+|.+-|+.+.|+|....+|+|++.|++++||...+.      
T Consensus       349 ~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------  420 (459)
T KOG0272|consen  349 LSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------  420 (459)
T ss_pred             eeEeECCCce-EEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc------
Confidence            9999999885 799999999999999998 67799999999999999999976689999999999999998875      


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                              .++..+.||.+.|.+++.++++. .|+|++.|.++++|.
T Consensus       421 --------~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  421 --------SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR  458 (459)
T ss_pred             --------ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence                    66788899999999999999999 699999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-42  Score=293.34  Aligned_cols=247  Identities=26%  Similarity=0.449  Sum_probs=215.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----CCceEEE
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLS  196 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s  196 (424)
                      -.+|..-|.|++|+||++ .||+|+.||.|++||..+.         ......+.+|...|++|+|.|-    +..+|++
T Consensus       153 ~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg---------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las  222 (480)
T KOG0271|consen  153 CKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTG---------QQIGRALRGHKKWITALAWEPLHLVPPCRRLAS  222 (480)
T ss_pred             ecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCC---------CcccccccCcccceeEEeecccccCCCccceec
Confidence            348999999999999997 7999999999999998772         2334578999999999999874    2237999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------  263 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------  263 (424)
                      ++.||.|+|||+..+      .++..+.+|+.+|+|+.|--++  ++++|+.|++|++|+...+...             
T Consensus       223 ~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~l  294 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHL  294 (480)
T ss_pred             ccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeee
Confidence            999999999999876      4567788999999999997554  7889999999999987653110             


Q ss_pred             ---------------------------------------------------------------CCeeeeeccCCCeeEEE
Q 014433          264 ---------------------------------------------------------------KPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       264 ---------------------------------------------------------------~~~~~~~~~~~~v~~v~  280 (424)
                                                                                     +++..+.+|..-|+.+.
T Consensus       295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~  374 (480)
T KOG0271|consen  295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS  374 (480)
T ss_pred             eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence                                                                           34555678889999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+|++. ++|+++.|.+|++||-++ ++.+.+|.+|-.+|..++|+.+.+ +|++|+.|.++++|++++.          
T Consensus       375 fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk----------  441 (480)
T KOG0271|consen  375 FSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK----------  441 (480)
T ss_pred             ECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee----------
Confidence            999998 699999999999999999 899999999999999999999985 8999999999999999984          


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                          .+...+.||...|..+.|+|+|. .+++|+.|..+++|.
T Consensus       442 ----Kl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  442 ----KLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR  479 (480)
T ss_pred             ----eecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence                56677889999999999999999 799999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-43  Score=301.56  Aligned_cols=252  Identities=24%  Similarity=0.400  Sum_probs=227.6

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-CceEEEEe
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-EGHLLSGS  198 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~  198 (424)
                      .+++-.++|..+.|++++. +||||+-+|.++||+...          +....++.+|...|.++.|+|.. ...+++|+
T Consensus       170 SQ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~----------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQ----------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             hhccCCCcceeeEeecCCC-eEEEeecCCceeEeecCC----------cceeEEEeccccceeeEEEccCCCccceeeec
Confidence            3556778999999999886 899999999999999987          57788999999999999999983 44699999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .||++++|++.+.      .++..+.+|...|..++|+|+|++ +++++.|.+-++||++++..   +....+|...|.+
T Consensus       239 ~Dgtvklw~~~~e------~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~  308 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE------TPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFS  308 (459)
T ss_pred             cCCceeeeccCCC------cchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchh---hHhhcccccccce
Confidence            9999999999875      457778899999999999999975 56999999999999999764   5566799999999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      ++|+|+|. +++||+.|..-+|||+|+ +.++..+.+|..+|.+++|+|+| +.||||+.|++++|||++..        
T Consensus       309 iaf~~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r--------  377 (459)
T KOG0272|consen  309 IAFQPDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR--------  377 (459)
T ss_pred             eEecCCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc--------
Confidence            99999998 899999999999999999 89999999999999999999999 58999999999999999975        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                            ..++++.+|.+-|+.|+|+|+..++|+|++.|++++||...+...
T Consensus       378 ------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  378 ------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             ------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence                  447888999999999999996666899999999999999877643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-42  Score=275.00  Aligned_cols=298  Identities=24%  Similarity=0.436  Sum_probs=255.3

Q ss_pred             CCccEEEEccCCCCCCCCCCceEEEEEeecCCC--CCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEE
Q 014433           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE--NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII  119 (424)
Q Consensus        42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (424)
                      +-=++++|.|..+         .+++++|.+.-  .....+.|.++.                         ..+.+...
T Consensus         9 f~GysvqfSPf~~---------nrLavAt~q~yGl~G~G~L~ile~~-------------------------~~~gi~e~   54 (311)
T KOG0277|consen    9 FHGYSVQFSPFVE---------NRLAVATAQHYGLAGNGRLFILEVT-------------------------DPKGIQEC   54 (311)
T ss_pred             cccceeEeccccc---------chhheeehhhcccccCceEEEEecC-------------------------CCCCeEEE
Confidence            4467899999875         45555553321  122356665552                         12356677


Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..+.-.+.+..++|++...+.+++++.||+++|||...         ...|+..++.|..+|.++.|++.....++++|.
T Consensus        55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM---------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             EeeecccceeEeeecCCCcceEEEEecCceEEEeccCC---------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence            78888899999999999888999999999999999664         256788999999999999999988778999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |++|++|+...++      .+.++.+|...|...+|+|..+++|++++.|+++++||+|....   ...+..|...+.|+
T Consensus       126 D~TiKLW~~~r~~------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  126 DGTIKLWDPNRPN------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCC  196 (311)
T ss_pred             CCceEeecCCCCc------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEee
Confidence            9999999997663      46778999999999999999999999999999999999998753   44478899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      .|+..+.++++||+.|+.|+.||+|+...|+..+.+|.-+|..++|||....+||+++.|-+++|||.....        
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------  268 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------  268 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------
Confidence            999999999999999999999999999999999999999999999999998999999999999999998643        


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                           .++.+...|+..|.++.|++..+..+++++.|+.++||+.
T Consensus       269 -----s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 -----SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                 4455566789999999999988878999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-39  Score=298.28  Aligned_cols=268  Identities=28%  Similarity=0.461  Sum_probs=232.3

Q ss_pred             CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC----------CCC-----------CCCCCCCC
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP----------SKP-----------PLDGACSP  170 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~----------~~~-----------~~~~~~~~  170 (424)
                      ..+.+-.....+-...++|..|++++. +||.|..|..|++|.+....          ..+           ........
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence            345566666666778999999999887 89999999999999998411          000           01122233


Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      ..++.+|.++|+++.|+|+.+ +|+++|.|+++++|.+.+.      .++..+++|..+|+++.|+|.| +.|||++.|+
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~  515 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQ  515 (707)
T ss_pred             eEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecCCc-eEEEecCCCc
Confidence            456899999999999999887 8999999999999999766      4577788999999999999997 6789999999


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                      +.++|....   ..|++.+.+|-+.|.|++|+|+.. ++|+|+.|.+|++||+.+ +..++.|.+|.++|++++|||+|.
T Consensus       516 tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  516 TARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR  590 (707)
T ss_pred             eeeeeeccc---CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc
Confidence            999999988   446888889999999999999887 699999999999999998 788999999999999999999996


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                       +|++|+.||.|+|||+..+              .++..+.+|++.|.++.|+.+|. +||++|.|++|++||+..-..
T Consensus       591 -~LaSg~ed~~I~iWDl~~~--------------~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  591 -YLASGDEDGLIKIWDLANG--------------SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             -eEeecccCCcEEEEEcCCC--------------cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcc
Confidence             7999999999999999986              56777889999999999999999 899999999999999976543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-39  Score=274.77  Aligned_cols=263  Identities=22%  Similarity=0.414  Sum_probs=220.7

Q ss_pred             CCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeE
Q 014433          105 DFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYG  183 (424)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~  183 (424)
                      ++..|+...-.++.+ ...|..+|.++.|++++. .+++|+.+|.|++|+...           ..+..+.+|. ..|.+
T Consensus       119 EFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm-----------nnVk~~~ahh~eaIRd  185 (464)
T KOG0284|consen  119 EFTLWNGTSFNFETI-LQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM-----------NNVKIIQAHHAEAIRD  185 (464)
T ss_pred             cEEEecCceeeHHHH-hhhhcccceeEEEccCCC-EEEEcCCCceEEecccch-----------hhhHHhhHhhhhhhhe
Confidence            333344333333322 347999999999999886 899999999999999875           3334455554 89999


Q ss_pred             EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~  263 (424)
                      ++|+|++. .|++|+.||+|+|||....+.      ...+.+|.-.|.+++|+|... ++|+++.|..|++||.+++.+ 
T Consensus       186 lafSpnDs-kF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~c-  256 (464)
T KOG0284|consen  186 LAFSPNDS-KFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSC-  256 (464)
T ss_pred             eccCCCCc-eeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcch-
Confidence            99999777 799999999999999976643      344678999999999999875 788999999999999999886 


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                        +.++..|+..|..+.|+|++. +|+|++.|..+++||+|. -+.+..+++|+..|++++|+|-.+.+|++|+.||.|.
T Consensus       257 --l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  257 --LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             --hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence              777788999999999999995 799999999999999996 5778899999999999999999889999999999999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .|.+....             .+...-.+|...|++++|+|-|. +|++|+.|.++++|.-...
T Consensus       333 h~~v~~~~-------------p~~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  333 HWVVGLEE-------------PLGEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             EEeccccc-------------cccCCCcccccceeeeeccccce-eEeecCCCcceeeeccCCC
Confidence            99987322             22223357899999999999999 8999999999999976543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.2e-36  Score=246.52  Aligned_cols=245  Identities=25%  Similarity=0.402  Sum_probs=214.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ..-|..++|+|.+. ++|+|+-|....||++.....+    +.......+.+|.+-+.++.|-+++  .|++++.|.++.
T Consensus        97 s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~----g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCa  169 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAE----GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCA  169 (343)
T ss_pred             ceeEEEEEECCCCC-eEEecCcCceeEEEeccccccc----ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEE
Confidence            45788999999886 8999999999999999863222    2234456789999999999999854  599999999999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      +||+++++      .+..+.+|.+.|.+++++|...+.|++|+.|+..++||+|.+..   .+.+.+|.+.|++|.|.|+
T Consensus       170 lWDie~g~------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  170 LWDIETGQ------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPS  240 (343)
T ss_pred             EEEcccce------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEccC
Confidence            99999884      46778899999999999996667888999999999999999865   8899999999999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      |. -|++|+.|++.++||+|. .+.+..+..  -..+|++++||..|+ +|.+|..|.++.+||.-.+            
T Consensus       241 G~-afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~------------  305 (343)
T KOG0286|consen  241 GD-AFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKG------------  305 (343)
T ss_pred             CC-eeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecccc------------
Confidence            98 599999999999999998 566666653  346899999999996 7889999999999998764            


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                        +.+..+.||.+.|+++..+|+|. .++||+.|.+++||.
T Consensus       306 --e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 --ERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             --ceEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence              55777889999999999999999 799999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=247.28  Aligned_cols=260  Identities=23%  Similarity=0.329  Sum_probs=220.3

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|++.|+.++..+.++.++.+++.|.++.+|++.....     ....+++.+.||...|..+..++++. +.++++.|
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-----~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD   84 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-----KYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWD   84 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-----ccCceeeeeeccceEecceEEccCCc-eEEecccc
Confidence            4579999999999999889999999999999999987532     23577889999999999999999988 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--cCCCeeE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNC  278 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~  278 (424)
                      +++++||+.++      +..+.+.+|...|.+++|+++++++ ++|+.|.+|++|++....    ..+...  +...|+|
T Consensus        85 ~~lrlWDl~~g------~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   85 GTLRLWDLATG------ESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSC  153 (315)
T ss_pred             ceEEEEEecCC------cEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccE----EEEEecCCCcCcEEE
Confidence            99999999887      3567788999999999999998865 599999999999998643    223322  2788999


Q ss_pred             EEecCCC-CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          279 LAFNPFN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       279 v~~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      +.|+|.. +.+|++++.|++|++||+++ .+....+.+|++.++.+++||+|. ++++|+.||.+.+||++.++      
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k------  225 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK------  225 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc------
Confidence            9999984 44799999999999999998 788889999999999999999995 89999999999999999863      


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCCC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP  416 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  416 (424)
                              .++.+ +|...|.+++|+|+..+ |+. ..+..|+||++.++.+.++-..+
T Consensus       226 --------~lysl-~a~~~v~sl~fspnryw-L~~-at~~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  226 --------NLYSL-EAFDIVNSLCFSPNRYW-LCA-ATATSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             --------eeEec-cCCCeEeeEEecCCcee-Eee-ccCCceEEEeccchhhhhhcccc
Confidence                    34444 56778999999999874 443 34556999999999776654443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.7e-36  Score=247.71  Aligned_cols=255  Identities=15%  Similarity=0.253  Sum_probs=220.8

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|.++.|+++.+ .|++++.||.+.|||.-+          ......+.-....|..++|+|.+. ++|+|+.|+
T Consensus        52 kGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~T----------tnK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN  119 (343)
T KOG0286|consen   52 KGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFT----------TNKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDN  119 (343)
T ss_pred             cccccceeeeEecCCcC-eEEeeccCCeEEEEEccc----------ccceeEEecCceeEEEEEECCCCC-eEEecCcCc
Confidence            47999999999999886 799999999999999877          334455666678899999999988 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ...||++............+.+.+|.+.+.++.|.+++ ++ ++++.|.+..+||+.+++.   +..+.+|.+.|.++++
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~---~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQ---TQVFHGHTGDVMSLSL  194 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceE---EEEecCCcccEEEEec
Confidence            99999998765545555667788999999999999865 45 4999999999999999775   8888999999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      .|...+.|++|+.|+..++||+|. +.++++|.+|.+.|++++|.|+|. -+++|+.|+++++||++...+         
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~---------  263 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE---------  263 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE---------
Confidence            995445899999999999999999 699999999999999999999996 699999999999999998643         


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                         ..++....-..+|++++|+..|+ +|.+|..|..+.|||.-.+.
T Consensus       264 ---~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  264 ---LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ---EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccc
Confidence               33444444566899999999999 78888999999999987653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=238.59  Aligned_cols=255  Identities=18%  Similarity=0.388  Sum_probs=215.7

Q ss_pred             EEEEeccC-CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       118 ~~~~~~h~-~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +.+.+.|+ +.|+++...|+++ .||+++ ...||+||+++        ....|+.++.+|...|+++.|..+|. .+++
T Consensus        32 C~rTiqh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S--------~np~Pv~t~e~h~kNVtaVgF~~dgr-WMyT  100 (311)
T KOG0315|consen   32 CSRTIQHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNS--------NNPNPVATFEGHTKNVTAVGFQCDGR-WMYT  100 (311)
T ss_pred             EEEEEecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccC--------CCCCceeEEeccCCceEEEEEeecCe-EEEe
Confidence            46678887 5899999999887 677666 46899999998        44567899999999999999999998 8999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      |+.||+++|||++.....      +.+ .|.++|+++..+|....|| +|..+|.|++||++.......  .+.....+|
T Consensus       101 gseDgt~kIWdlR~~~~q------R~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~--liPe~~~~i  170 (311)
T KOG0315|consen  101 GSEDGTVKIWDLRSLSCQ------RNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHE--LIPEDDTSI  170 (311)
T ss_pred             cCCCceEEEEeccCcccc------hhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccc--cCCCCCcce
Confidence            999999999999875432      223 3779999999999987776 999999999999998754221  223445789


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCC-----CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .++...|+|. .++.+...|..++|++-..     -.|+..++.|++.+..+.+||+++ +||+++.|.+++||+.... 
T Consensus       171 ~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~-  247 (311)
T KOG0315|consen  171 QSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF-  247 (311)
T ss_pred             eeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc-
Confidence            9999999998 6888889999999998652     257888999999999999999996 7999999999999999874 


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                  ..+-..+.+|...+++.+|+.++.| |++++.|+.+++|++..+..
T Consensus       248 ------------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  248 ------------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             ------------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCce
Confidence                        1445667899999999999999995 89999999999999998753

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.2e-36  Score=262.01  Aligned_cols=248  Identities=23%  Similarity=0.449  Sum_probs=220.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .....|++++|+.+|. +||+|+.||.++||+...           ....++..|+++|.+|.|+..|. +|++++.||+
T Consensus       233 ~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~t  299 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGT  299 (524)
T ss_pred             CccCCcceEEecCCCC-eEEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCcc
Confidence            3457899999999886 899999999999999876           45677889999999999999888 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +.+||..++.      ..+.+..|..+-.++.|-.+.  -|++++.||.|+|+.+....   |+.++.+|.++|.++.|+
T Consensus       300 tilwd~~~g~------~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  300 TILWDAHTGT------VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             EEEEeccCce------EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC---cceeeecccCceEEEEEC
Confidence            9999997763      455566788887889998765  47899999999999998744   688888999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC--------cEEEEEECCCeEEEeeCCCCCccc
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE--------TILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~--------~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      |.+. +|+++++|++++||.... ......+.+|...|..+.|+|.++        ..+++++.|++|++||+..+    
T Consensus       369 ~tg~-LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----  442 (524)
T KOG0273|consen  369 PTGS-LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----  442 (524)
T ss_pred             CCCc-eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence            9998 899999999999999887 788899999999999999999763        47999999999999999885    


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                                .+++.+..|..+|++++|+|+++ .+++|+.||.|.+|+..++.+-.
T Consensus       443 ----------v~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  443 ----------VPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             ----------ceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeE
Confidence                      67888999999999999999999 59999999999999999986543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-36  Score=278.21  Aligned_cols=254  Identities=18%  Similarity=0.336  Sum_probs=217.8

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      .........+|.++|..++|+|+.+ +|++++.|++||+|.+.+          ......++||..+|+.+.|+|.|- +
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t----------~s~~V~y~GH~~PVwdV~F~P~Gy-Y  507 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDT----------WSCLVIYKGHLAPVWDVQFAPRGY-Y  507 (707)
T ss_pred             CCceeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeeccc----------ceeEEEecCCCcceeeEEecCCce-E
Confidence            3445555889999999999999886 899999999999999998          677788999999999999999876 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      ||||+.|++.++|.....      .+++.+.+|-+.|.|++|+|+.. .+++|+.|.+|++||+.++..   ++.+.+|.
T Consensus       508 Fatas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~---VRiF~GH~  577 (707)
T KOG0263|consen  508 FATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS---VRIFTGHK  577 (707)
T ss_pred             EEecCCCceeeeeecccC------CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE---EEEecCCC
Confidence            999999999999998764      56788899999999999999986 557999999999999999885   88889999


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      ++|.+++|+|.|. .||+|+.||.|.+||+.+ +.++..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+......
T Consensus       578 ~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  578 GPVTALAFSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CceEEEEEcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence            9999999999998 599999999999999998 789999999999999999999995 8999999999999999765443


Q ss_pred             c----------CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE
Q 014433          354 Q----------TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       354 ~----------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  393 (424)
                      .          ......+....++..+.....+|..+.|....- +++.|
T Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g  703 (707)
T KOG0263|consen  655 LNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG  703 (707)
T ss_pred             ccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence            0          001112233456777777788899999987553 45444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=240.88  Aligned_cols=255  Identities=18%  Similarity=0.318  Sum_probs=206.1

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .+.-+|...|..+..++++. +.++++.|+++++||+..          .++...+.+|...|.+++|++++. .+++|+
T Consensus        57 r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~----------g~~t~~f~GH~~dVlsva~s~dn~-qivSGS  124 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLAT----------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGS  124 (315)
T ss_pred             eeeeccceEecceEEccCCc-eEEeccccceEEEEEecC----------CcEEEEEEecCCceEEEEecCCCc-eeecCC
Confidence            34457999999999999986 899999999999999998          577889999999999999999988 599999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeec--CCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      .|.+|.+|++....       ......  +.+-|+|+.|+|.. ..+|++++.|++|++||+++-+.   ...+.+|.+.
T Consensus       125 rDkTiklwnt~g~c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~  194 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVC-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGY  194 (315)
T ss_pred             CcceeeeeeecccE-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhcccccccc
Confidence            99999999997542       222222  36789999999984 44778999999999999999664   6677899999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      ++.++++|+|. +.++|+.||.+.+||++. ++.+..+. |...|.+++|+|+.. .|+.+ .+..|+|||+........
T Consensus       195 v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~fspnry-wL~~a-t~~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  195 VNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLCFSPNRY-WLCAA-TATSIKIWDLESKAVVEE  269 (315)
T ss_pred             EEEEEECCCCC-EEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEEecCCce-eEeec-cCCceEEEeccchhhhhh
Confidence            99999999998 799999999999999998 66676665 588999999999873 45444 455599999998765444


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ......++     ......-.-.+++|+++|. .|++|-.|+.|++|.+..
T Consensus       270 l~~d~~g~-----s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  270 LKLDGIGP-----SSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cccccccc-----ccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence            33222222     1111222356799999999 688899999999998753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.5e-37  Score=263.52  Aligned_cols=251  Identities=24%  Similarity=0.452  Sum_probs=217.6

Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      +|.-.....-...|+.++|.|+|+ .|++|+..|.+.+|+...          ..-...++.|..+|.++.|++++. .+
T Consensus        86 Kf~h~s~NKvkc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~~g~-wm  153 (464)
T KOG0284|consen   86 KFVHTSSNKVKCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSHNGT-WM  153 (464)
T ss_pred             ceEeccccccccceeeEEEcCCCc-eeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEccCCC-EE
Confidence            444333344556899999999997 688999999999999866          333445788999999999999988 79


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      ++|+.+|.|++|+.+...       ++.++.|. ..|++++|+|.+. .|+++++||+|+|||.+..+.   -..+.+|.
T Consensus       154 iSgD~gG~iKyWqpnmnn-------Vk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke---e~vL~GHg  222 (464)
T KOG0284|consen  154 ISGDKGGMIKYWQPNMNN-------VKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE---ERVLRGHG  222 (464)
T ss_pred             EEcCCCceEEecccchhh-------hHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch---hheeccCC
Confidence            999999999999987542       33344454 8999999999664 678999999999999998664   45568999


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      -.|.|++|+|... ++|+|+.|..|++||.|+ +.++.++..|+..|..+.|+|++ .+|+++|.|..++++|++..   
T Consensus       223 wdVksvdWHP~kg-LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~m---  296 (464)
T KOG0284|consen  223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTM---  296 (464)
T ss_pred             CCcceeccCCccc-eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHh---
Confidence            9999999999887 899999999999999999 89999999999999999999999 58999999999999999965   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                                 .-++.+++|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus       297 -----------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  297 -----------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             -----------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence                       33677899999999999999988899999999999999987

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.8e-35  Score=236.69  Aligned_cols=252  Identities=23%  Similarity=0.397  Sum_probs=214.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|...|.+++|+|.++ +||+|+.|.++.||.-..        +.......+.||..+|.+++|+++|. +||+|+.|.+
T Consensus        59 ~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~--------~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKS  128 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGR-YLASASFDATVVIWKKED--------GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKS  128 (312)
T ss_pred             cchheeeeeeecCCCc-EEEEeeccceEEEeecCC--------CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCe
Confidence            6999999999999997 999999999999999775        55777889999999999999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |-||.+...   ..+.+...++.|...|..+.|+|... +|++++.|.+|++|+-..+......+++.+|...|.+++|+
T Consensus       129 VWiWe~ded---dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~  204 (312)
T KOG0645|consen  129 VWIWEIDED---DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD  204 (312)
T ss_pred             EEEEEecCC---CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence            999999854   56678889999999999999999876 67799999999999887555466788999999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +.|.+ |++++.|++++||-+...     .-..|+.++..+.|. ++  +||+++.|+.|++|.-.......        
T Consensus       205 ~~G~r-l~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p--------  267 (312)
T KOG0645|consen  205 NIGSR-LVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEP--------  267 (312)
T ss_pred             CCCce-EEEecCCcceEeeeeccC-----cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCc--------
Confidence            99974 999999999999987641     112477899999999 54  69999999999999876432111        


Q ss_pred             CCee-eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          363 PPEL-LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       363 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ...+ ......|...|++++|+|..+.+|++++.||.|++|.+.
T Consensus       268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            1122 234567888999999999755689999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.9e-36  Score=251.57  Aligned_cols=252  Identities=26%  Similarity=0.403  Sum_probs=223.5

Q ss_pred             cEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          115 KVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       115 ~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      +.++.+.+ +|.+-|.|+++.|.+. .+|+|+.|++|+|||+.+          .+...++.||...|..+++++-.+ +
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlat----------g~LkltltGhi~~vr~vavS~rHp-Y  207 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLAT----------GQLKLTLTGHIETVRGVAVSKRHP-Y  207 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEccc----------CeEEEeecchhheeeeeeecccCc-e
Confidence            44444444 6999999999999765 899999999999999998          566788999999999999999888 8


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      +++++.|+.|+.||++.+      +.++.+.+|-+.|.+++.+|.-+ ++++|+.|.+++|||+|+..   .+..+.+|.
T Consensus       208 lFs~gedk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~---~V~~l~GH~  277 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA---SVHVLSGHT  277 (460)
T ss_pred             EEEecCCCeeEEEechhh------hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc---eEEEecCCC
Confidence            999999999999999877      35677889999999999999876 66799999999999999965   488999999


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      .+|.++.+.|.++ .+++|+.|++|++||++. ++...++..|+..|.+++.+|.. +++|+++.|. |+-|++..+   
T Consensus       278 ~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g---  350 (460)
T KOG0285|consen  278 NPVASVMCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEG---  350 (460)
T ss_pred             CcceeEEeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCcc---
Confidence            9999999999888 599999999999999998 78888899999999999999988 4788988886 999999875   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                                 ..+..+.+|+..|+.++.+.|+  ++++|++.|.+.+||..++.
T Consensus       351 -----------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  351 -----------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             -----------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCc
Confidence                       4455678999999999999887  58899999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.9e-35  Score=240.66  Aligned_cols=254  Identities=21%  Similarity=0.405  Sum_probs=218.8

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|.+.|+.++|+|+|. +||+|+.|..|.+|++..         .++....+++|.++|..+.|.+++. .+++++
T Consensus        41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~g---------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~g  109 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYG---------DCENFWVLKGHSGAVMELHGMRDGS-HILSCG  109 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccc---------cccceeeeccccceeEeeeeccCCC-EEEEec
Confidence            44668999999999999887 899999999999999765         2566778899999999999999988 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|.+|+.||+++++.      .+.+++|..-|+.+.-+.-|..++.+++.||++++||+|+...   ++.+ ..+-.+++
T Consensus       110 tDk~v~~wD~~tG~~------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~-~~kyqltA  179 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKR------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTF-ENKYQLTA  179 (338)
T ss_pred             CCceEEEEeccccee------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhcc-ccceeEEE
Confidence            999999999999854      5667789999999998878899999999999999999998664   3332 23678999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +.|...+. -+.+|+-|+.|++||+|. .....++.+|..+|+.+..+|+|. ++.+-+.|.++++||++.....     
T Consensus       180 v~f~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~-----  251 (338)
T KOG0265|consen  180 VGFKDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS-----  251 (338)
T ss_pred             EEeccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC-----
Confidence            99999888 488999999999999998 788999999999999999999996 6889999999999999875432     


Q ss_pred             cCCCCCeeeEEEcCCCC----CcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          359 AEDGPPELLFIHGGHTS----KISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                           .+++..+.+|..    ....++|+|+++ .+..|+.|..+++||....
T Consensus       252 -----~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  252 -----QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             -----CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc
Confidence                 244666666542    356789999999 5899999999999999874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-35  Score=248.88  Aligned_cols=254  Identities=22%  Similarity=0.386  Sum_probs=228.2

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .+..+|..+|+.+-|+|.-. ++++++.|++|++||..+          ......+++|...+.+|+|+..|. +|++++
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~t----------g~~e~~LrGHt~sv~di~~~a~Gk-~l~tcS  169 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTET----------GELERSLRGHTDSVFDISFDASGK-YLATCS  169 (406)
T ss_pred             hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccc----------hhhhhhhhccccceeEEEEecCcc-EEEecC
Confidence            44567999999999999776 899999999999999988          344778999999999999999887 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|-.+.+||..+.     ..+++...+|...|.+++|-|.+.++ ++++.|.+|+.|++.++.+   +.++.+|...|..
T Consensus       170 sDl~~~LWd~~~~-----~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~c---v~t~~~h~ewvr~  240 (406)
T KOG0295|consen  170 SDLSAKLWDFDTF-----FRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRM  240 (406)
T ss_pred             CccchhheeHHHH-----HHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEeccccee---EEeccCchHhEEE
Confidence            9999999999743     35667778899999999999999755 5999999999999999875   8889999999999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC--------------CCcEEEEEECCCeEEE
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------------NETILASCCLGRRLMV  344 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~--------------~~~~l~s~~~dg~i~i  344 (424)
                      ++.+.+|. ++|+++.|.+|++|-+.+ +++...+..|+.+|-+++|.|.              +..++++++.|++|++
T Consensus       241 v~v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  241 VRVNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            99999997 899999999999999998 7788899999999999999874              2258999999999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ||+.++              .+++++.||.+.|.+++|+|.|+| |+|+.+|+++++||++...+.
T Consensus       319 wdv~tg--------------~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cm  369 (406)
T KOG0295|consen  319 WDVSTG--------------MCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCM  369 (406)
T ss_pred             EeccCC--------------eEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceee
Confidence            999986              789999999999999999999995 889999999999999988654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-35  Score=234.25  Aligned_cols=249  Identities=21%  Similarity=0.412  Sum_probs=211.6

Q ss_pred             eEEEecCCCCcEEEEEe-------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          129 NRARYMPQNPFLIATKT-------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .++.|+|--.+.||++.       ..|++.|.++...        .......-..-...+..++|+++..+.+++++.||
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~--------~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG   83 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP--------KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDG   83 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCC--------CCeEEEEeeecccceeEeeecCCCcceEEEEecCc
Confidence            46889985434444433       3689999998641        11111222235678999999999888999999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ++++||+....     .++..++.|...|.++.|++..+..+++++-|++|++|+...+..   +.++.+|...|...+|
T Consensus        84 SLrl~d~~~~s-----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---v~Tf~gh~~~Iy~a~~  155 (311)
T KOG0277|consen   84 SLRLFDLTMPS-----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---VQTFNGHNSCIYQAAF  155 (311)
T ss_pred             eEEEeccCCCC-----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc---eEeecCCccEEEEEec
Confidence            99999964332     477889999999999999998888888999999999999988664   8889999999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|..++++++++.|+++++||+|.+++.+. +..|...|.++.|+...+.+|+||+.|+.|++||+++.+          
T Consensus       156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----------  224 (311)
T KOG0277|consen  156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----------  224 (311)
T ss_pred             CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----------
Confidence            999999999999999999999999877665 899999999999999888999999999999999999865          


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                         ..++.+.+|.-.|..++|+|....+|+|++.|-+++|||+..+
T Consensus       225 ---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  225 ---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             ---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence               4578889999999999999998889999999999999999744

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.8e-33  Score=243.74  Aligned_cols=262  Identities=19%  Similarity=0.399  Sum_probs=214.1

Q ss_pred             CcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceeEEEecCC
Q 014433          114 GKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF  189 (424)
Q Consensus       114 ~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~  189 (424)
                      ++|+....+ .|..-|+|++|+|+|. ++|+.+.||+|.+||=.+          ...+..+.   +|.+.|++|+|+|+
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~-~Fat~gsDgki~iyDGkt----------ge~vg~l~~~~aHkGsIfalsWsPD  246 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKT----------GEKVGELEDSDAHKGSIFALSWSPD  246 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCC-eEEEecCCccEEEEcCCC----------ccEEEEecCCCCccccEEEEEECCC
Confidence            345544444 5889999999999987 899999999999999877          44455565   89999999999999


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcc-------------------------------------cceeeeecCCccEee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSL-------------------------------------EAMQIFKVHEGVVED  232 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~  232 (424)
                      +. .|++++.|.+++|||+.+.+...++                                     .++..+.+|...|++
T Consensus       247 s~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa  325 (603)
T KOG0318|consen  247 ST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA  325 (603)
T ss_pred             Cc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence            98 6999999999999999876543221                                     345667889999999


Q ss_pred             EEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------------------------------------------
Q 014433          233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------------------------------------------  263 (424)
Q Consensus       233 ~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------------------------------------------  263 (424)
                      +..++++.+++ +|+.||.|.-||..++...                                                 
T Consensus       326 Ltv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l  404 (603)
T KOG0318|consen  326 LTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL  404 (603)
T ss_pred             EEEcCCCCEEE-eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec
Confidence            99999997655 9999999999998654211                                                 


Q ss_pred             -------------------------------------------------------------------------CCeeeee
Q 014433          264 -------------------------------------------------------------------------KPVQSVV  270 (424)
Q Consensus       264 -------------------------------------------------------------------------~~~~~~~  270 (424)
                                                                                               .......
T Consensus       405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~  484 (603)
T KOG0318|consen  405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL  484 (603)
T ss_pred             CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence                                                                                     1112234


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      .|.++|++++++|++. +||+|...+.+.+||+.+.......+..|...|.+++|+|+.. ++|+|+.|-+|.||++...
T Consensus       485 ~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  485 EHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             cccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence            5888999999999998 6999999999999999885454555667999999999999995 8999999999999999874


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .             ..+.....|...|+.+.|-.+..  +++++.|..|++|++.
T Consensus       563 ~-------------~~i~iknAH~~gVn~v~wlde~t--vvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  563 A-------------KHIIIKNAHLGGVNSVAWLDEST--VVSSGQDANIKVWNVT  602 (603)
T ss_pred             h-------------hheEeccccccCceeEEEecCce--EEeccCcceeEEeccc
Confidence            3             44666678988899999987654  8888999999999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-32  Score=223.08  Aligned_cols=256  Identities=20%  Similarity=0.383  Sum_probs=215.1

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l  194 (424)
                      +.+...-+|.+.+..++|+|-...+||+|+.|..|+||+....       ........+ .+|+..|.+++|+|.|+ +|
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------~s~~ck~vld~~hkrsVRsvAwsp~g~-~L   76 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YL   76 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------CcEEEEEeccccchheeeeeeecCCCc-EE
Confidence            3445556799999999999972348999999999999998841       112222223 36999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ++||.|.++.||.-..    ..++++..+.+|...|.+++|+++|. +||+++.|..|-||.+........+..++.|..
T Consensus        77 a~aSFD~t~~Iw~k~~----~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   77 ASASFDATVVIWKKED----GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ  151 (312)
T ss_pred             EEeeccceEEEeecCC----CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence            9999999999998654    45577889999999999999999986 678999999999999997776667788899999


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      .|..+.|+|... +|+++++|.+|++|+-..  ...+++++.+|...|.+++|++.|. .|++++.|++++||.....- 
T Consensus       152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             cccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccCc-
Confidence            999999999877 899999999999998662  2367899999999999999999995 69999999999999865321 


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                       ..-|...++.++|. ++  +|+|++.|+.|+++.-...
T Consensus       229 -----------------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  229 -----------------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             -----------------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC
Confidence                             13467789999998 43  7999999999999988754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-34  Score=254.51  Aligned_cols=251  Identities=23%  Similarity=0.357  Sum_probs=222.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|...|.++.|+|..+ .++++-.+|.|.||+.++          ...+..+.-..-+|.+..|-+... .+++|+.|..
T Consensus        11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyet----------qtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~   78 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYET----------QTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQ   78 (794)
T ss_pred             ccCCceeeeecCCCCc-eEEEeeecCeeEEEeccc----------ceeeeeeeecccchhhheeeeccc-eEEEecCCce
Confidence            4888999999999998 566678899999999998          345566777778899999988555 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |+||+.++..      .+..+..|.+.|.+++.||..++++ ++++|-+|++||-...-  ...+.+.+|...|.+++|+
T Consensus        79 IrVfnynt~e------kV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~w--a~~qtfeGH~HyVMqv~fn  149 (794)
T KOG0276|consen   79 IRVFNYNTGE------KVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEW--ACEQTFEGHEHYVMQVAFN  149 (794)
T ss_pred             EEEEecccce------eeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCce--eeeeEEcCcceEEEEEEec
Confidence            9999998874      4677889999999999999999765 99999999999998653  4577889999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC-CcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN-ETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      |...+.||+++-|++|++|.+.+ ..+..++.+|...|+++.+-+.| +.+|++|+.|.+|+|||..+.           
T Consensus       150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----------  217 (794)
T KOG0276|consen  150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----------  217 (794)
T ss_pred             CCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----------
Confidence            99988999999999999999998 68999999999999999998865 237999999999999999885           


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                         .++.++.||...|+.+.|+|.-+ +|+||++||+++||+-.+-.++
T Consensus       218 ---~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  218 ---SCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ---HHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence               66778899999999999999999 8999999999999998775544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.9e-35  Score=253.69  Aligned_cols=254  Identities=21%  Similarity=0.326  Sum_probs=215.4

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ++-.+...-+|+..|+++.|.|-..+||++|+.|+.|+||++..         ....+.++.+|..+|.+++|++.|. .
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------~~~~lrtf~gH~k~Vrd~~~s~~g~-~  272 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------DRRCLRTFKGHRKPVRDASFNNCGT-S  272 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------CcceehhhhcchhhhhhhhccccCC-e
Confidence            44455666689999999999996557999999999999999976         2566788999999999999999998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      |++++.|+.|++||+++++..      ..+. -...++++.|+|++.++|++|+.|+.|+.||+|+++.   ++.+..|-
T Consensus       273 fLS~sfD~~lKlwDtETG~~~------~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hL  342 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVL------SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHL  342 (503)
T ss_pred             eeeeecceeeeeeccccceEE------EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhh
Confidence            999999999999999998543      2232 3457899999999989999999999999999999885   77778899


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------------------------------------
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------------------------------------  309 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------------------------------------------  309 (424)
                      +.|..+.|-+.|++ +++.+.|++++||+.+.+-..                                            
T Consensus       343 g~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  343 GAILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             hheeeeEEccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence            99999999999985 889999999999998752100                                            


Q ss_pred             -ceEecCCC--CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433          310 -LHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE  386 (424)
Q Consensus       310 -~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  386 (424)
                       ...+.+|.  +--..+.|||+|+ +|++|+.||.+.+||.++.              .++..+.+|...+..+.|+|..
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~--------------kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT--------------KLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh--------------hhhhccccCCcceEEEEecCCC
Confidence             11223343  3457799999996 7999999999999999874              6677788999999999999998


Q ss_pred             CcEEEEEeCCCcEEEEe
Q 014433          387 DWVISSVAEDNILQIWQ  403 (424)
Q Consensus       387 ~~~l~s~~~dg~i~vw~  403 (424)
                      +-.+||++.||.|++|+
T Consensus       487 ~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeEecccCceeEecC
Confidence            88899999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-33  Score=223.29  Aligned_cols=246  Identities=21%  Similarity=0.278  Sum_probs=212.1

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -.|+++|.+++|+-+|. +.++++.|.+|++|+...          ...+.++.+|..+|..++.+.++. .|++|+.|.
T Consensus        14 ~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r----------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk   81 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR----------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGDK   81 (307)
T ss_pred             cccccceEEEEEccCCC-EEEEcCCCceEEeecccc----------cceeeeecCCCceeeecccccccc-ccccCCCCc
Confidence            46899999999999996 788889999999999877          577889999999999999999887 599999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|.+||+++++      ..+.+.+|.+.|+.++|+.... ++++|+.|.++++||.|+.. ..|++.+......|.+|..
T Consensus        82 ~v~vwDV~TGk------v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v  153 (307)
T KOG0316|consen   82 AVQVWDVNTGK------VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDV  153 (307)
T ss_pred             eEEEEEcccCe------eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEe
Confidence            99999999984      4677889999999999998765 77899999999999999877 5788888888899999998


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +.   +.+++|+.||+++.||+|. +.....+-  ..+|++++|++++. ..++++.|+++++.|-.++           
T Consensus       154 ~~---heIvaGS~DGtvRtydiR~-G~l~sDy~--g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tG-----------  215 (307)
T KOG0316|consen  154 AE---HEIVAGSVDGTVRTYDIRK-GTLSSDYF--GHPITSVSFSKDGN-CSLASSLDSTLRLLDKETG-----------  215 (307)
T ss_pred             cc---cEEEeeccCCcEEEEEeec-ceeehhhc--CCcceeEEecCCCC-EEEEeeccceeeecccchh-----------
Confidence            74   4699999999999999998 55444443  46899999999995 7888999999999998886           


Q ss_pred             CCCeeeEEEcCCCCCcc--eEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          362 GPPELLFIHGGHTSKIS--DFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                         +++..+.||.+.-+  +.+++.... .+++|++||.|.+||+.....
T Consensus       216 ---klL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  216 ---KLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             ---HHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecccee
Confidence               67778888876543  456666666 699999999999999987643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=250.59  Aligned_cols=267  Identities=21%  Similarity=0.333  Sum_probs=216.6

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      -++++.+|...+++++++|||+ ++|||+.||.|+|||...          ..+..++..|+..|+++.|+..+. .+++
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S----------gfC~vTFteHts~Vt~v~f~~~g~-~lls  409 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS----------GFCFVTFTEHTSGVTAVQFTARGN-VLLS  409 (893)
T ss_pred             eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC----------ceEEEEeccCCCceEEEEEEecCC-EEEE
Confidence            4567789999999999999997 899999999999999987          677889999999999999999887 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCC-eEEEEEcCCCCCCCCeeeeeccCC
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ++.||+|+.||+.....-      +++.. ......|++..|.|. ++++|+.|. .|.||++++++.   +-.+.+|.+
T Consensus       410 sSLDGtVRAwDlkRYrNf------RTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql---lDiLsGHEg  479 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNF------RTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL---LDILSGHEG  479 (893)
T ss_pred             eecCCeEEeeeeccccee------eeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee---eehhcCCCC
Confidence            999999999999776432      33332 234678899999987 455666554 599999999885   777789999


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      +|.+++|+|.+. +||+|+.|.+|++||+-.....+.++. +...+..++|+|+|+ -||+++.||.|.+||........
T Consensus       480 PVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  480 PVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             cceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceeec
Confidence            999999999998 799999999999999976445556665 477899999999997 59999999999999998776554


Q ss_pred             CCCCcCCCC------CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          355 TPEDAEDGP------PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       355 ~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ..+...+..      ..............+.+++++||. .|++||..+.|++|++.++.+
T Consensus       557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             cccchhhccccccccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEECchhhe
Confidence            433322211      111222223346789999999999 688889999999999998865

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=256.69  Aligned_cols=260  Identities=21%  Similarity=0.302  Sum_probs=222.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .-+|.+.|.++....+| .+||||+.|.++++|.++...      ....+.....+|...|.+++++..+..+|+++|.|
T Consensus       361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc------chhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence            34799999999955556 499999999999999984411      22345566789999999999999888899999999


Q ss_pred             CcEEEEeCCCCCCCCc---ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          201 AQICLWDINAAPKNKS---LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +++++|++...+....   +........|...|++++.+|+.. +||+|+.|.+.+||++....   ....+.+|+..|.
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw  509 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVW  509 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce---EEEEeeCCccceE
Confidence            9999999987322211   111123456999999999999875 89999999999999999644   4788999999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      |+.|+|... ++||+|.|++|+||.+.+ ..+++++.+|...|..+.|-.++. .|++++.||.|+||++.+.       
T Consensus       510 ~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~-------  579 (775)
T KOG0319|consen  510 CVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN-------  579 (775)
T ss_pred             EEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch-------
Confidence            999999877 899999999999999998 799999999999999999999997 5889999999999999986       


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                             .++.++.+|...|++++-+|... +++||+.||.|.+|.=.+...
T Consensus       580 -------eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~  623 (775)
T KOG0319|consen  580 -------ECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEE  623 (775)
T ss_pred             -------hhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCcHHH
Confidence                   66778899999999999999999 899999999999998665533

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.9e-33  Score=254.02  Aligned_cols=258  Identities=24%  Similarity=0.389  Sum_probs=221.8

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+..+.|..++|......++|+++..+.+++|++.+           .....+.||...|.+++...+|- +|++|+.|.
T Consensus       320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-----------~~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~  387 (775)
T KOG0319|consen  320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-----------SYCQIIPGHTEAVLSLDVWSSGD-LLATGSKDK  387 (775)
T ss_pred             cCCchhheeeeecCCccceEEEEeCCCceEEEecCC-----------CceEEEeCchhheeeeeecccCc-EEEEecCCc
Confidence            357789999999876667899999999999998876           22237899999999999444464 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee------eeeccCCC
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ------SVVAHQSE  275 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~  275 (424)
                      ++++|.++.+.  ....++....+|...|.+++++..+..+|++++.|+++++|++...+...+..      ....|...
T Consensus       388 svilWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd  465 (775)
T KOG0319|consen  388 SVILWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD  465 (775)
T ss_pred             eEEEEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence            99999995443  23345667789999999999999999999999999999999998733222211      23579999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |+|++.+|+.+ ++|||+.|.+.+||++.. .....++.+|+..|.++.|+|..+ ++||+|.|++|+||.+.+.     
T Consensus       466 IN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f-----  537 (775)
T KOG0319|consen  466 INCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF-----  537 (775)
T ss_pred             ccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc-----
Confidence            99999999887 899999999999999996 788999999999999999999984 8999999999999999986     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                               .++.++.||...|..+.|-.+++ .|+|++.||.+++|+++++.+..
T Consensus       538 ---------SClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  538 ---------SCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             ---------eeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhh
Confidence                     77889999999999999999999 68999999999999999997653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-32  Score=237.70  Aligned_cols=257  Identities=24%  Similarity=0.443  Sum_probs=216.1

Q ss_pred             CCCCCCCcEEEEEE--------eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC
Q 014433          108 GFGCANGKVQIIQQ--------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST  179 (424)
Q Consensus       108 ~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~  179 (424)
                      .++...+.+++...        -.|.++|.+++|+..|. +|++++.||++.+||..+          ......+.-|..
T Consensus       251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~----------g~~~q~f~~~s~  319 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHT----------GTVKQQFEFHSA  319 (524)
T ss_pred             EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccC----------ceEEEeeeeccC
Confidence            33444555554443        24999999999999986 899999999999999977          344556777888


Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      +...+.|-.+..  |++++.||.|+|+.+...      .+..++.+|.++|+++.|+|.+. +|++++.|++++||....
T Consensus       320 ~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  320 PALDVDWQSNDE--FATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             CccceEEecCce--EeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence            878999987554  999999999999999765      46777889999999999999986 778999999999999887


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCC--------eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNE--------WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      ...   ...+.+|...|..+.|+|.|+        ..+++++.|++|++||+.. +.+++++..|+.+|.+++|+|+++ 
T Consensus       391 ~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~-  465 (524)
T KOG0273|consen  391 SNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR-  465 (524)
T ss_pred             Ccc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc-
Confidence            654   677789999999999998753        3689999999999999998 899999999999999999999996 


Q ss_pred             EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ++|+|+.||.|.||+++.+              .++..+.+ .+.|..++|+.+|.. |..+-.|+.+++-|+.
T Consensus       466 ylAsGs~dg~V~iws~~~~--------------~l~~s~~~-~~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  466 YLASGSLDGCVHIWSTKTG--------------KLVKSYQG-TGGIFELCWNAAGDK-LGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCCeeEeccccch--------------heeEeecC-CCeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence            7999999999999999885              45555554 445999999999984 6666679999998875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.3e-34  Score=239.48  Aligned_cols=251  Identities=22%  Similarity=0.399  Sum_probs=213.9

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ...+|.+.|.|+.|..   .+|++|++|.+|+|||+++          ..++.++.+|...|..+.|+.   +++++++.
T Consensus       232 ~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------ge~l~tlihHceaVLhlrf~n---g~mvtcSk  295 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSK  295 (499)
T ss_pred             hhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------CchhhHHhhhcceeEEEEEeC---CEEEEecC
Confidence            3458999999999964   4999999999999999998          677888999999999999974   48999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |.++.+||+....   .+...+.+.+|...|+.+.|+..   ++++++.|.+|++|++.+...   +.++.+|...|-|+
T Consensus       296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~ef---vRtl~gHkRGIACl  366 (499)
T KOG0281|consen  296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEF---VRTLNGHKRGIACL  366 (499)
T ss_pred             CceeEEEeccCch---HHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceee---ehhhhcccccceeh
Confidence            9999999998763   34556678899999999999743   677999999999999999775   77888999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      .+.  ++ ++++|+.|.+|++||+.. +.+++.+++|+.-|.++.|...   -+++|+.||+|+|||+......+...  
T Consensus       367 QYr--~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~--  437 (499)
T KOG0281|consen  367 QYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA--  437 (499)
T ss_pred             hcc--Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc--
Confidence            885  44 899999999999999998 8999999999999999999753   48999999999999998865443322  


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                         ...++..+..|.+.|..+.|..  . .|++++.|.+|.|||+..+.-.
T Consensus       438 ---~~~Cl~~lv~hsgRVFrLQFD~--f-qIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  438 ---STLCLRTLVEHSGRVFRLQFDE--F-QIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ---cchHHHhhhhccceeEEEeecc--e-EEEeccCCCeEEEEEcCCCCcc
Confidence               1245666778899999999963  3 6888899999999999877543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=232.62  Aligned_cols=246  Identities=22%  Similarity=0.383  Sum_probs=219.6

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|...|..|+|+..|. ++|+++.|-.+.+||..+         ....+..+.+|...|.++.|-|.|. ++++++.|
T Consensus       146 LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~---------~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD  214 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDT---------FFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRD  214 (406)
T ss_pred             hhccccceeEEEEecCcc-EEEecCCccchhheeHHH---------HHHHHHHhcCcccceeeEEEEecCC-eeeecccc
Confidence            457999999999999886 899999999999999986         1455667889999999999999986 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      .+|+.|++.++      .++..+.+|...|..++.+.+|. ++|+++.|.+|++|-+.++.+   ...+..|..+|.|++
T Consensus       215 ~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~---k~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  215 NTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC---KAELREHEHPVECIA  284 (406)
T ss_pred             cceeEEecccc------eeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchh---hhhhhccccceEEEE
Confidence            99999999887      46778889999999999999885 889999999999999998764   456678999999999


Q ss_pred             ecCC--------------CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          281 FNPF--------------NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       281 ~~~~--------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      |.|.              +..++++++.|++|++||+.+ +.++.++.+|.+.|..++|+|.|+ +|+++..|+++++||
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWD  362 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEE
Confidence            9774              123799999999999999998 799999999999999999999996 799999999999999


Q ss_pred             CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      +++.              +++..+..|...|+++.|+.+.+ .++||+-|..+++|..
T Consensus       363 l~~~--------------~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  363 LKNL--------------QCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eccc--------------eeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence            9986              56777778999999999999999 6999999999999964

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.6e-32  Score=256.88  Aligned_cols=248  Identities=25%  Similarity=0.390  Sum_probs=209.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      |...|.++.|+|++. .+++++.++.+++|+....        .......+.+|...|.+++|+|++. ++++|+.|++|
T Consensus       158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~--------~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~ti  227 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGI--------KSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTL  227 (456)
T ss_pred             ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccc--------cchhhccccccccceeeeEECCCCc-EEEEecCCceE
Confidence            378999999999997 5999999999999999551        1024455688999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++||+....     ..++.+.+|...|++++|+|++ +++++|+.|++|+|||+++++.   +..+.+|...|++++|++
T Consensus       228 riwd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~---~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  228 RIWDLKDDG-----RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC---VRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             EEeeccCCC-----eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---EEeeeccCCceEEEEECC
Confidence            999994332     3567788999999999999999 6888999999999999999664   888899999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          284 FNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      ++. +|++++.|+.|++||+.+ +.  ++..+..+...  +++++|+|++. +++++..|+.+++||++..         
T Consensus       299 d~~-~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~---------  366 (456)
T KOG0266|consen  299 DGN-LLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSG---------  366 (456)
T ss_pred             CCC-EEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCC---------
Confidence            998 688999999999999998 45  45666666555  99999999996 7889999999999999986         


Q ss_pred             CCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          360 EDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                           .......+|...   +.+...++.+. ++++|+.|+.|++|++.++.
T Consensus       367 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  367 -----KSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             -----cceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccc
Confidence                 344555666553   44455577888 69999999999999999753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.2e-31  Score=225.15  Aligned_cols=247  Identities=20%  Similarity=0.360  Sum_probs=205.1

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      +.....|.+.|.+++.+|+. +++|||+.|..-.||++.+          ......+.+|+..|+++.|+.++. +||+|
T Consensus        57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~----------ge~~~eltgHKDSVt~~~Fshdgt-lLATG  124 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST----------GEFAGELTGHKDSVTCCSFSHDGT-LLATG  124 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC----------CcceeEecCCCCceEEEEEccCce-EEEec
Confidence            34556899999999999955 5999999999999999998          345678899999999999999988 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +.+|.|+||...++....      .+...-..+.-+.|+|.+. +|++|+.||.+-+|.+.+..   ..+.+.+|..+++
T Consensus       125 dmsG~v~v~~~stg~~~~------~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGEQW------KLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCT  194 (399)
T ss_pred             CCCccEEEEEcccCceEE------EeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc---eeeEecCCCCCcc
Confidence            999999999998874322      2223456788899999775 67799999999999998854   3677789999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCc------------------------------------------------
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTA------------------------------------------------  309 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~------------------------------------------------  309 (424)
                      +=.|.|+|++ +++|..||+|++|++.+ +++                                                
T Consensus       195 ~G~f~pdGKr-~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  195 CGEFIPDGKR-ILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN  272 (399)
T ss_pred             cccccCCCce-EEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence            9999999995 88999999999999886 322                                                


Q ss_pred             -----------------------------------------------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          310 -----------------------------------------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       310 -----------------------------------------------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                                                                     ++....|..+|+.+.|-+ .. +|++++.+|.|
T Consensus       273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v  350 (399)
T KOG0296|consen  273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD-YLLTACANGKV  350 (399)
T ss_pred             CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc-hheeeccCceE
Confidence                                                           122223566677777777 32 56777777777


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ++||.+++              ++++.+.||...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus       351 ~~wDaRtG--------------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  351 RQWDARTG--------------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             Eeeecccc--------------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence            77877775              78999999999999999999999 89999999999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.9e-34  Score=240.23  Aligned_cols=237  Identities=19%  Similarity=0.357  Sum_probs=206.1

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....|+|+.+..   ..+++|..|.+|+|||.+.          ......+.||++.|.|+.|..  . ++++|+.|.+|
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~----------~~c~~~L~GHtGSVLCLqyd~--r-viisGSSDsTv  259 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS----------LECLKILTGHTGSVLCLQYDE--R-VIVSGSSDSTV  259 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEecccc----------HHHHHhhhcCCCcEEeeeccc--e-EEEecCCCceE
Confidence            346899999854   2699999999999999987          566778999999999999964  3 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++||++++      +++..+-.|...|..+.|+.   .++++++.|.++.+||+..+........+.+|...|+.+.|+.
T Consensus       260 rvWDv~tg------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~  330 (499)
T KOG0281|consen  260 RVWDVNTG------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  330 (499)
T ss_pred             EEEeccCC------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence            99999988      45666778999999999984   2567999999999999998775555566789999999999974


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                        + ++++++.|.+|++|++.+ .+.++++.+|+..|.|+.+.  + .++++|+.|.+|++||+..+             
T Consensus       331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G-------------  390 (499)
T KOG0281|consen  331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG-------------  390 (499)
T ss_pred             --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEecccc-------------
Confidence              3 799999999999999998 89999999999999998885  3 58999999999999999986             


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                       .++..+.||..-|.++.|..  + -|++|+.||.|+|||+..+.-
T Consensus       391 -~cLRvLeGHEeLvRciRFd~--k-rIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  391 -ACLRVLEGHEELVRCIRFDN--K-RIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             -HHHHHHhchHHhhhheeecC--c-eeeeccccceEEEEecccccC
Confidence             66888899999999999974  3 599999999999999987743

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-31  Score=220.03  Aligned_cols=241  Identities=23%  Similarity=0.413  Sum_probs=208.6

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +|.++|..+.|++++. .|++++.|.+|+.||..+          .+.....++|..-|+++.-+.-|..++.+++.||+
T Consensus        88 gHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~t----------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t  156 (338)
T KOG0265|consen   88 GHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAET----------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT  156 (338)
T ss_pred             cccceeEeeeeccCCC-EEEEecCCceEEEEeccc----------ceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence            8999999999999986 788899999999999998          67788899999999999977778878999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +++||+++....+.      +. .+-+++++.|...+..++ +|+-|+.|++||+|....   ...+.+|..+|+.+..+
T Consensus       157 ~kl~D~R~k~~~~t------~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~---~~~lsGh~DtIt~lsls  225 (338)
T KOG0265|consen  157 LKLWDIRKKEAIKT------FE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDG---LYTLSGHADTITGLSLS  225 (338)
T ss_pred             EEEEeecccchhhc------cc-cceeEEEEEeccccccee-eccccCceeeeccccCcc---eEEeecccCceeeEEec
Confidence            99999987643322      22 356899999999888776 999999999999998775   78889999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCC---CCcceEecCCCC----CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHKE----EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~h~~----~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |+|.+ +.+-+.|.++++||+|..   .+++..+.+|..    ....++|+|++. .+.+|+.|..+++||....     
T Consensus       226 ~~gs~-llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r-----  298 (338)
T KOG0265|consen  226 RYGSF-LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR-----  298 (338)
T ss_pred             cCCCc-cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc-----
Confidence            99995 789999999999999853   234677776543    457889999995 6899999999999998764     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                               .+++.+.||.+.|+.++|+|..+ +|.+++.|.+|.+=
T Consensus       299 ---------~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lg  335 (338)
T KOG0265|consen  299 ---------RILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLG  335 (338)
T ss_pred             ---------cEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEee
Confidence                     67889999999999999999999 89999999998863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.7e-31  Score=241.51  Aligned_cols=321  Identities=19%  Similarity=0.335  Sum_probs=236.2

Q ss_pred             HhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCC
Q 014433           34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN  113 (424)
Q Consensus        34 ~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (424)
                      .+|++.+.=|.-+++|.|++          ..+++|.      .|-+.|+..  |.+...           +       -
T Consensus        89 Vlh~f~fk~~v~~i~fSPng----------~~fav~~------gn~lqiw~~--P~~~~~-----------~-------~  132 (893)
T KOG0291|consen   89 VLHRFNFKRGVGAIKFSPNG----------KFFAVGC------GNLLQIWHA--PGEIKN-----------E-------F  132 (893)
T ss_pred             eeEEEeecCccceEEECCCC----------cEEEEEe------cceeEEEec--Ccchhc-----------c-------c
Confidence            45667777788899999987          3455544      355666655  422110           1       1


Q ss_pred             CcEEEEE-EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433          114 GKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       114 ~~~~~~~-~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      ..|...+ -.+|-..|.+|.|+.|.+ +|++|+.|-.++||.++..        .......+.+|...|.++-|..+.. 
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gsrD~s~rl~~v~~~--------k~~~~~~l~gHkd~VvacfF~~~~~-  202 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGSRDLSARLFGVDGN--------KNLFTYALNGHKDYVVACFFGANSL-  202 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCc-eEEeccccceEEEEEeccc--------cccceEeccCCCcceEEEEeccCcc-
Confidence            2344443 457999999999999775 9999999999999999872        2233567889999999999998776 


Q ss_pred             eEEEEeCCCcEEEEeCCCC------------------------CCCCcc-------------------------------
Q 014433          193 HLLSGSDDAQICLWDINAA------------------------PKNKSL-------------------------------  217 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~------------------------~~~~~~-------------------------------  217 (424)
                      -+++.+.||.+.+|.....                        ......                               
T Consensus       203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv  282 (893)
T KOG0291|consen  203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV  282 (893)
T ss_pred             eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence            5999999999999987611                        000000                               


Q ss_pred             ---------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          218 ---------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       218 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                                     ..++.+.-...+|..++|+..|..+...++.-|++.||+.++...   +...++|...+++++++
T Consensus       283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YS  359 (893)
T KOG0291|consen  283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLKQQGHSDRITSLAYS  359 (893)
T ss_pred             EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce---eeeccccccceeeEEEC
Confidence                           111111112234445555555554433333446667777666443   55567899999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC--
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE--  360 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--  360 (424)
                      |+|+ ++|||+.||.|+|||.++ +-++.+|..|++.|+.+.|+..+. .+++++.||+|+.||+......+++..++  
T Consensus       360 pDgq-~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~  436 (893)
T KOG0291|consen  360 PDGQ-LIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI  436 (893)
T ss_pred             CCCc-EEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCce
Confidence            9999 799999999999999998 789999999999999999999995 78999999999999998776554433221  


Q ss_pred             -------C---------------------CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          361 -------D---------------------GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       361 -------~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                             +                     ...+++-.+.||.++|.+++|+|.+. +|+|++.|.+|++|++-..
T Consensus       437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc
Confidence                   0                     12355666789999999999999999 8999999999999999655

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.6e-32  Score=216.15  Aligned_cols=244  Identities=18%  Similarity=0.309  Sum_probs=201.6

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC
Q 014433          136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK  215 (424)
Q Consensus       136 ~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  215 (424)
                      +.+-+||+++.|.+||+|...+          .....+++...+.|+.|...|++. .||+++. ..|++||+++++.  
T Consensus         8 d~~viLvsA~YDhTIRfWqa~t----------G~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np--   73 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALT----------GICSRTIQHPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNP--   73 (311)
T ss_pred             CCceEEEeccCcceeeeeehhc----------CeEEEEEecCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCC--
Confidence            3456899999999999999988          567788887778899999999887 5777765 6899999998754  


Q ss_pred             cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433          216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                        .++..+.+|...|+.+.|..+|+.+ ++|+.||+++|||+|...+    +....|.++|+++..+|+.. -|++|..+
T Consensus        74 --~Pv~t~e~h~kNVtaVgF~~dgrWM-yTgseDgt~kIWdlR~~~~----qR~~~~~spVn~vvlhpnQt-eLis~dqs  145 (311)
T KOG0315|consen   74 --NPVATFEGHTKNVTAVGFQCDGRWM-YTGSEDGTVKIWDLRSLSC----QRNYQHNSPVNTVVLHPNQT-ELISGDQS  145 (311)
T ss_pred             --CceeEEeccCCceEEEEEeecCeEE-EecCCCceEEEEeccCccc----chhccCCCCcceEEecCCcc-eEEeecCC
Confidence              3678899999999999999999755 6999999999999999654    33345789999999999877 58899999


Q ss_pred             CcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC
Q 014433          296 KTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT  374 (424)
Q Consensus       296 g~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~  374 (424)
                      |.|++||++. ..+...+ .....+|.++...|+|. +|+++...|++++|++-......        +.+.+..++.|.
T Consensus       146 g~irvWDl~~-~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s--------~l~P~~k~~ah~  215 (311)
T KOG0315|consen  146 GNIRVWDLGE-NSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTAS--------ELEPVHKFQAHN  215 (311)
T ss_pred             CcEEEEEccC-CccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccc--------cceEhhheeccc
Confidence            9999999997 3333332 33456899999999996 79999999999999997743222        235666788999


Q ss_pred             CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                      +.+..+.++|+++ .|+++|.|.+++||+..+- ++-+.
T Consensus       216 ~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~-~kle~  252 (311)
T KOG0315|consen  216 GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF-FKLEL  252 (311)
T ss_pred             ceEEEEEECCCCc-EEEeecCCceEEEEecCCc-eeeEE
Confidence            9999999999999 5999999999999999877 44443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.2e-30  Score=264.47  Aligned_cols=259  Identities=20%  Similarity=0.276  Sum_probs=203.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      +.+...|.+++|+|....+||+++.||+|+|||+.+          ......+.+|...|++++|+|....+|++|+.||
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg  598 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG  598 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence            445678999999987556899999999999999986          3556778899999999999985444899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|++||++++.      .+..+.. ...+.++.|++....+|++|+.||.|++||++....  ++..+.+|...|.++.|
T Consensus       599 ~v~iWd~~~~~------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f  669 (793)
T PLN00181        599 SVKLWSINQGV------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRF  669 (793)
T ss_pred             EEEEEECCCCc------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEE
Confidence            99999998663      2333443 467999999776556788999999999999987542  45667789999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCC-----CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      . ++. .|++++.|++|++||++..     ..++..+.+|...+..++|+|++. +|++|+.|+.|++|+..........
T Consensus       670 ~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~  746 (793)
T PLN00181        670 V-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSY  746 (793)
T ss_pred             e-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEE
Confidence            7 455 6899999999999999852     256788999999999999999985 8999999999999998654211100


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      ...... ...-.....|...|.+++|+|++. .|++++.||.|+||++
T Consensus       747 ~~~~~~-~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        747 KFKTID-PVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             ecccCC-cccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence            000000 000011234566799999999999 6899999999999997

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-32  Score=218.81  Aligned_cols=271  Identities=17%  Similarity=0.295  Sum_probs=222.5

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      +...+|..+++.|+|+.+|. +|.+++.|.++.||-...          ...+.++.+|.+.|++++...+.. ++++|+
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~n----------GerlGty~GHtGavW~~Did~~s~-~liTGS   71 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN----------GERLGTYDGHTGAVWCCDIDWDSK-HLITGS   71 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecC----------CceeeeecCCCceEEEEEecCCcc-eeeecc
Confidence            34568999999999999997 899999999999998755          466789999999999999988776 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE----eCCCeEEEEEcCCCC----CCCCeeeee
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLLIWDLRTPS----VSKPVQSVV  270 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~dg~i~i~d~~~~~----~~~~~~~~~  270 (424)
                      .|.++++||+.+++.      +..+. ...+|..+.|++.+..++++.    +..+.|.++|++...    ...|+..+.
T Consensus        72 AD~t~kLWDv~tGk~------la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   72 ADQTAKLWDVETGKQ------LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             ccceeEEEEcCCCcE------EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            999999999999854      33333 467899999999987555443    245779999999543    234677788


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      .+.+.++.+-|.|.++ .|++|..||.|.+||+++..+.+.....|...|+.++++++. .++++++.|.+.++||+++.
T Consensus       145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce
Confidence            8889999999999998 589999999999999999767788888999999999999998 48999999999999999887


Q ss_pred             CcccCCCCcCC------CC-----------------------------------CeeeEEEcCCCCCcceEEeCCCCCcE
Q 014433          351 DEEQTPEDAED------GP-----------------------------------PELLFIHGGHTSKISDFSWNPCEDWV  389 (424)
Q Consensus       351 ~~~~~~~~~~~------~~-----------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~  389 (424)
                      ...+.......      .|                                   .+-+...+||-++|++++|+|+|+ .
T Consensus       223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s  301 (327)
T KOG0643|consen  223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S  301 (327)
T ss_pred             eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence            54432211100      00                                   012334468999999999999999 7


Q ss_pred             EEEEeCCCcEEEEecCCccCCC
Q 014433          390 ISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       390 l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                      .+||++||.|++.-+..+.++.
T Consensus       302 YsSGGEDG~VR~h~Fd~~YF~~  323 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFDSNYFDF  323 (327)
T ss_pred             cccCCCCceEEEEEeccchhhe
Confidence            9999999999999998887754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.9e-31  Score=266.20  Aligned_cols=260  Identities=20%  Similarity=0.301  Sum_probs=207.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|.+++|+|++. ++|+|+.|+.|+||++........  ....+...+. +...+.+++|++....+|++++.||+
T Consensus       481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc--ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            4899999999999886 899999999999999864211100  1112233343 45679999999875558999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++||+.++      ..+..+.+|...|++++|+|.+..+|++|+.||.|++||++++..   +..+.. ...+.++.|+
T Consensus       557 v~lWd~~~~------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---~~~~~~-~~~v~~v~~~  626 (793)
T PLN00181        557 VQVWDVARS------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---IGTIKT-KANICCVQFP  626 (793)
T ss_pred             EEEEECCCC------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---EEEEec-CCCeEEEEEe
Confidence            999999765      345667789999999999986556788999999999999998654   555544 4679999996


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +....+|++|+.||.|++||+++...++..+.+|...|.++.|. ++ .+|++++.|+.|+|||++.....        .
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~--------~  696 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG--------I  696 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc--------c
Confidence            65444799999999999999998555778888999999999997 44 37999999999999999753210        0


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ....+..+.+|...+..++|+|++. +|++|+.|+.|++|+....
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCC
Confidence            1245677889999999999999998 7999999999999997654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-32  Score=256.23  Aligned_cols=248  Identities=22%  Similarity=0.444  Sum_probs=216.3

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....|..++|+|..+ .+.++--+|.|++||.+.          ...+..+..|.++|.+++|+|..+ +|++|+.|-.|
T Consensus         8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM----------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykI   75 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM----------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKI   75 (1202)
T ss_pred             ccccccceecCCCCC-EEEEeecCceeeeehhhh----------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEE
Confidence            456788999999988 778888999999999987          566788999999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++|+..+.      +++..+.+|-+.|..+.|++.-+.++ ++++|.+|+||+..++++   +..+.+|...|.|..|+|
T Consensus        76 kVWnYk~r------rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~---iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   76 KVWNYKTR------RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKC---IAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             EEEecccc------eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCce---EEEEecCceEEEeeccCC
Confidence            99999876      45667789999999999999998765 999999999999999765   889999999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCC----------------------------cceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          284 FNEWILATGSTDKTVKLFDLRKIST----------------------------ALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~----------------------------~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      ... +++++|-|.+|++||+....+                            ..+.+.+|...|+-++|+|.-+ ++++
T Consensus       146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS  223 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS  223 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence            877 799999999999999853210                            1345678999999999999987 8999


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |+.|..|++|.++..+.            =-+-+.+||.+.|.++-|+|... +|+|.|+|++|+|||+....
T Consensus       224 G~DDRqVKlWrmnetKa------------WEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKA------------WEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             cCCcceeeEEEeccccc------------eeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence            99999999999975321            12345689999999999999888 89999999999999998763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.3e-30  Score=228.76  Aligned_cols=280  Identities=25%  Similarity=0.417  Sum_probs=225.6

Q ss_pred             CCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE
Q 014433           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (424)
Q Consensus        42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (424)
                      -|..++.|.|+.          ..++.|+     .++.+.++.+.-.                          + .....
T Consensus        10 ~~i~~~~~~~~~----------~~l~~~~-----~~g~i~i~~~~~~--------------------------~-~~~~~   47 (289)
T cd00200          10 GGVTCVAFSPDG----------KLLATGS-----GDGTIKVWDLETG--------------------------E-LLRTL   47 (289)
T ss_pred             CCEEEEEEcCCC----------CEEEEee-----cCcEEEEEEeeCC--------------------------C-cEEEE
Confidence            457789999874          4555555     2457777766311                          0 12234


Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..|...+..+.|+|++. ++++++.+|.|++|++..          ......+..|...+.++.|++++. ++++++.+|
T Consensus        48 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  115 (289)
T cd00200          48 KGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLET----------GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK  115 (289)
T ss_pred             ecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCc----------ccceEEEeccCCcEEEEEEcCCCC-EEEEecCCC
Confidence            46888899999999885 788899999999999987          345667788999999999999865 788888799


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|.+||+.+.      .....+..|...+.+++|+|++. ++++++.++.|++||++.++.   +..+..|...+.+++|
T Consensus       116 ~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~  185 (289)
T cd00200         116 TIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAF  185 (289)
T ss_pred             eEEEEECCCc------EEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEE
Confidence            9999999754      23445567888999999999865 666777799999999987653   5566678889999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|++. .+++++.++.|++||++. ..++..+..|...+.+++|+|++ .++++++.||.|++|++...           
T Consensus       186 ~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~-----------  251 (289)
T cd00200         186 SPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTG-----------  251 (289)
T ss_pred             CCCcC-EEEEecCCCcEEEEECCC-CceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCc-----------
Confidence            99987 477777899999999997 67777887889999999999996 57888888999999999864           


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                         .....+.+|...|.+++|+|+++ .|++++.||.+++|+
T Consensus       252 ---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~  289 (289)
T cd00200         252 ---ECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD  289 (289)
T ss_pred             ---eeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence               44555668888999999999988 688999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=229.55  Aligned_cols=254  Identities=17%  Similarity=0.356  Sum_probs=204.3

Q ss_pred             cEEEEEE-eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          115 KVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       115 ~~~~~~~-~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      .+++.++ .+|..+|..+.|+|+++ ++++|+.+..+.+||+.+        +...... -.+|...+.+++|.|++. .
T Consensus       258 ~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~t--------gd~~~~y-~~~~~~S~~sc~W~pDg~-~  326 (519)
T KOG0293|consen  258 HFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDT--------GDLRHLY-PSGLGFSVSSCAWCPDGF-R  326 (519)
T ss_pred             ceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCCc--------chhhhhc-ccCcCCCcceeEEccCCc-e
Confidence            3555554 57999999999999987 566667778899999998        2222111 123568899999999998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      +++|+.|+.+..||++...       +..+++. ...|.+++..++|..++ +.+.|..|++|+..+.....    +...
T Consensus       327 ~V~Gs~dr~i~~wdlDgn~-------~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~----lise  394 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLDGNI-------LGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRG----LISE  394 (519)
T ss_pred             eEecCCCCcEEEecCCcch-------hhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhc----cccc
Confidence            9999999999999998653       2223322 25699999999999887 55689999999998755422    2234


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      ..+|++++.+.++. ++++.-.+..+++||+.. ...+..+.+|+..  +..-+|--..+.++|+|+.|+.|+||+..++
T Consensus       395 ~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  395 EQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             cCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence            67899999999998 566777899999999996 6788889888754  5556676655569999999999999999886


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                    .++.++.||...|++++|+|..+.++||+|+||+|+||.+...
T Consensus       473 --------------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  473 --------------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             --------------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence                          7789999999999999999999999999999999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-31  Score=246.88  Aligned_cols=260  Identities=19%  Similarity=0.317  Sum_probs=203.0

Q ss_pred             EEEEEe--ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC---------------------------CC-C----
Q 014433          117 QIIQQI--NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---------------------------SK-P----  162 (424)
Q Consensus       117 ~~~~~~--~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~---------------------------~~-~----  162 (424)
                      ...+.+  .|.+.|.++.|+++|+ +||+|+.||.|+||.+...+                           .. .    
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            334444  5999999999999997 89999999999999986600                           00 0    


Q ss_pred             C------------------CCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433          163 P------------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       163 ~------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      .                  ..-..+|...+.||.+.|.+|.|+.++  +|++++.|.+|++|++....      ++..|.
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~------CL~~F~  407 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE------CLKVFS  407 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc------eeeEEe
Confidence            0                  011234567788999999999999753  79999999999999998663      455555


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR  304 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~  304 (424)
                       |...|+|++|+|.+.+.|++|+-||.|+||++...+    +.....-..-|++++|.|+|+ ..++|+.+|.+++|+.+
T Consensus       408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             -cCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEcc
Confidence             999999999999888889999999999999998765    334444568899999999998 58899999999999998


Q ss_pred             CCCCcceEec--CC------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC-
Q 014433          305 KISTALHTFD--SH------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS-  375 (424)
Q Consensus       305 ~~~~~~~~~~--~h------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-  375 (424)
                      .. +....+.  .|      ...|+.+.|.|....-+++.+.|..|+|||.+..              .++..++|+.. 
T Consensus       482 ~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--------------~lv~KfKG~~n~  546 (712)
T KOG0283|consen  482 GL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--------------DLVHKFKGFRNT  546 (712)
T ss_pred             CC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--------------hhhhhhcccccC
Confidence            63 3332222  11      2279999999977666777889999999999764              44445555432 


Q ss_pred             -CcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          376 -KISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       376 -~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       .-....|+.+|++ |+++++|..|+||++...
T Consensus       547 ~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  547 SSQISASFSSDGKH-IVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence             2356789999995 888899999999998443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5e-31  Score=249.16  Aligned_cols=247  Identities=25%  Similarity=0.433  Sum_probs=208.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|...|++++|+|++. ++++|+.|++|+|||+..         ......++.+|...|++++|+|.+ +++++|+.|+
T Consensus       200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~---------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~  268 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD---------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDG  268 (456)
T ss_pred             cccccceeeeEECCCCc-EEEEecCCceEEEeeccC---------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCC
Confidence            57999999999999997 899999999999999943         245678899999999999999999 5899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC--CeeEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCL  279 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~v  279 (424)
                      +|+|||++++      ++...+.+|.+.|++++|++++. ++++++.|+.|+|||+.++... ....+..+..  +++++
T Consensus       269 tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~  340 (456)
T KOG0266|consen  269 TVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSV  340 (456)
T ss_pred             cEEEEeccCC------eEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEE
Confidence            9999999885      46778889999999999999987 5568899999999999997721 1233334443  59999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC---EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      .|+|++. ++++++.|+.+++||++. ...+..+.+|...   +.+...++.+. ++++|+.|+.|++|++...      
T Consensus       341 ~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~------  411 (456)
T KOG0266|consen  341 QFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSG------  411 (456)
T ss_pred             EECCCCc-EEEEecCCCeEEEEEccC-CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCcc------
Confidence            9999998 588999999999999998 6778888888775   33444566775 7999999999999999874      


Q ss_pred             CCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEe--CCCcEEEEecC
Q 014433          357 EDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVA--EDNILQIWQMA  405 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~  405 (424)
                              ..+..+.+| ...+..++|+|... ++++++  .|+.+++|...
T Consensus       412 --------~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  412 --------GILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             --------chhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence                    445566788 88899999999998 788887  79999999864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.3e-31  Score=223.86  Aligned_cols=258  Identities=23%  Similarity=0.435  Sum_probs=211.6

Q ss_pred             EEEeccCCceeEEEecCCCC--cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          119 IQQINHDGEVNRARYMPQNP--FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~--~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ....+|.++|.+++|.-.++  ..+++++.|.++++|.++...+.      ........||...|-+++..+++. .+++
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------~~~~~~~~GHk~~V~sVsv~~sgt-r~~S  210 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------VKALKVCRGHKRSVDSVSVDSSGT-RFCS  210 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------hhHHhHhcccccceeEEEecCCCC-eEEe
Confidence            44568999999888865332  36999999999999999874322      223334459999999999999888 7999


Q ss_pred             EeCCCcEEEEeCCCCCC-------------------CCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433          197 GSDDAQICLWDINAAPK-------------------NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~  257 (424)
                      |+.|.+|.+|+......                   ...-.++..+.+|..+|.++.|++.+  .+.+++.|.+|+.||+
T Consensus       211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDL  288 (423)
T ss_pred             ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEe
Confidence            99999999999332110                   12225677789999999999999843  5569999999999999


Q ss_pred             CCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      .++..   +.++. ....++|++.+|... +||+|+.|..|++||.|+..  .+.+++.+|++.|.++.|+|...++|++
T Consensus       289 etg~~---~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  289 ETGGL---KSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ecccc---eeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            99875   33332 367899999999776 89999999999999999854  3567788999999999999999999999


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ++.|+++++||++...             ..++.+.+|...|.++.|+..+  +|++||.|+.|+|+.-.
T Consensus       364 ~S~D~t~klWDvRS~k-------------~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTK-------------APLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EecCCeEEEEEeccCC-------------CcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            9999999999999853             4688999999999999998543  69999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.7e-30  Score=228.21  Aligned_cols=246  Identities=27%  Similarity=0.451  Sum_probs=207.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. ++++++.+|.|++|++..          ......+..|...+..+.|+|++. +|++++.+|.
T Consensus         7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~   74 (289)
T cd00200           7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLET----------GELLRTLKGHTGPVRDVAASADGT-YLASGSSDKT   74 (289)
T ss_pred             ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeC----------CCcEEEEecCCcceeEEEECCCCC-EEEEEcCCCe
Confidence            6999999999999876 788999999999999987          335567788999999999999886 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++|++....      ....+..|...+.++.|++++. ++++++.+|.|++||+++.+.   ...+..|...+.+++|+
T Consensus        75 i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          75 IRLWDLETGE------CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC---LTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             EEEEEcCccc------ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE---EEEeccCCCcEEEEEEc
Confidence            9999998652      3445667888999999999854 666777799999999986543   56666788999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      |++. ++++++.++.|++||++. .+++..+..|...|.+++|+|++. .+++++.|+.|++||++..            
T Consensus       145 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~------------  209 (289)
T cd00200         145 PDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG------------  209 (289)
T ss_pred             CcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCC------------
Confidence            9876 687887799999999997 677888888999999999999986 5777888999999999864            


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                        ..+..+..|...+..++|+|++. ++++++.||.|++|++.++.
T Consensus       210 --~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         210 --KCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             --ceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce
Confidence              33445557788899999999976 78888889999999998653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-30  Score=226.24  Aligned_cols=221  Identities=22%  Similarity=0.429  Sum_probs=195.0

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      +..+|.+.=+.++|+++....+++|+.|+.|++||++......   ....+...+.+|...|..++|++....+|++++.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---ccccceEEeecCCcceehhhccccchhhheeecC
Confidence            4568888888999999988899999999999999998754431   2356677899999999999999999889999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |+.+.|||+++.    ..++.....+|.+.|+|++|+|.+..+||+|+.|++|.+||+|+...  ++..+.+|...|.+|
T Consensus       249 d~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  249 DGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQV  322 (422)
T ss_pred             CCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEE
Confidence            999999999963    11345556789999999999999999999999999999999998764  788999999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      .|+|....+||+++.|+.+.+||+...+.             ++....+|...|..+.|+|+.+.++++.+.|+.+.||.
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            99999999999999999999999976432             35667789999999999999999999999999999999


Q ss_pred             CCC
Q 014433          347 LSR  349 (424)
Q Consensus       347 ~~~  349 (424)
                      +..
T Consensus       403 ~s~  405 (422)
T KOG0264|consen  403 MAE  405 (422)
T ss_pred             ccc
Confidence            873

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-30  Score=216.33  Aligned_cols=263  Identities=18%  Similarity=0.316  Sum_probs=220.0

Q ss_pred             CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      .+++++ ..-+|-..|..+++++-.+ ++.+++.|+.|+.||+..          .+.++.+.||-..|++|+.+|.-. 
T Consensus       182 tg~Lkl-tltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhPTld-  248 (460)
T KOG0285|consen  182 TGQLKL-TLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHPTLD-  248 (460)
T ss_pred             cCeEEE-eecchhheeeeeeecccCc-eEEEecCCCeeEEEechh----------hhhHHHhccccceeEEEeccccce-
Confidence            445553 3457999999999999888 788889999999999987          567788999999999999999776 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      .|++|+.|.++++||+++.      ..+..+.+|..+|..+.+.|.++.++ +|+.|++|++||++.++.   ...+..|
T Consensus       249 vl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt---~~tlt~h  318 (460)
T KOG0285|consen  249 VLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT---MITLTHH  318 (460)
T ss_pred             eEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce---eEeeecc
Confidence            8999999999999999876      35677889999999999999988775 999999999999999875   6777889


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ...|.+++.+|... +||+++.| .|+-|++.. +..++.+.+|+.-|++++...++  ++++|+..|.+.+||.+++..
T Consensus       319 kksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  319 KKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             cceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcc
Confidence            99999999999765 78888876 599999998 77788899999999999999987  789999999999999999876


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      .|...... .|..+     .....|+..+|...+. .|++|..|.+|++|.-....-+
T Consensus       394 yQ~~~t~v-qpGSl-----~sEagI~as~fDktg~-rlit~eadKtIk~~keDe~aT~  444 (460)
T KOG0285|consen  394 YQRGQTIV-QPGSL-----ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDEHATE  444 (460)
T ss_pred             cccccccc-cCCcc-----ccccceeEEeecccCc-eEEeccCCcceEEEecccccCc
Confidence            55432110 01111     1134689999999998 6899999999999986655433

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.2e-30  Score=240.75  Aligned_cols=265  Identities=15%  Similarity=0.223  Sum_probs=191.4

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC--CCC-CCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL--DGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~--~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -..|+....++++.+ +++++.+.....|+..........  .+. ......+.+|.+.|.+++|+|.+..+|++|+.||
T Consensus        20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             eeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            345555666666543 444555666666664331100000  010 1112347899999999999994444899999999


Q ss_pred             cEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          202 QICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +|++||+...... ....++..+.+|...|.+++|+|.+..+|++++.|+.|+|||++++..   +..+..|...|.+++
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~~l~~h~~~V~sla  175 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VEVIKCHSDQITSLE  175 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EEEEcCCCCceEEEE
Confidence            9999999765321 112345678899999999999998777888999999999999998653   667778999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC-EEEEEEcCCCCcEEEEE---ECCCeEEEeeCCCCCcccCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPKNETILASC---CLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~  356 (424)
                      |+|++. +|++|+.|+.|++||+++ +..+..+.+|.+. +..+.|.+++..++++|   +.|+.|++||++....    
T Consensus       176 ~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~----  249 (493)
T PTZ00421        176 WNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS----  249 (493)
T ss_pred             EECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC----
Confidence            999987 799999999999999998 6778888888765 45788999886544444   2479999999986532    


Q ss_pred             CCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCccC
Q 014433          357 EDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAENIY  409 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~  409 (424)
                               .+..... +...+....|++++. +|++++ .|+.|++|++..+.+
T Consensus       250 ---------p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        250 ---------PYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             ---------ceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCce
Confidence                     1222222 233455677899999 565555 699999999987653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.6e-30  Score=236.20  Aligned_cols=258  Identities=23%  Similarity=0.453  Sum_probs=218.9

Q ss_pred             CCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceeEEEec
Q 014433          109 FGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWS  187 (424)
Q Consensus       109 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~  187 (424)
                      |....+++..+..+. .+.|+++.|+++|. +||+|..+|.|.|||...          .+....+.+ |...|-+++|+
T Consensus       202 W~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~----------~k~~~~~~~~h~~rvg~laW~  269 (484)
T KOG0305|consen  202 WSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKE----------QKKTRTLRGSHASRVGSLAWN  269 (484)
T ss_pred             EecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhh----------ccccccccCCcCceeEEEecc
Confidence            334556666666655 89999999999997 899999999999999987          455566777 99999999998


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      .   ..+.+|+.||.|..+|++..+...     ..+.+|...|..++|++++. .+|+|+.|+.+.|||.....   ++.
T Consensus       270 ~---~~lssGsr~~~I~~~dvR~~~~~~-----~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~---p~~  337 (484)
T KOG0305|consen  270 S---SVLSSGSRDGKILNHDVRISQHVV-----STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE---PKF  337 (484)
T ss_pred             C---ceEEEecCCCcEEEEEEecchhhh-----hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc---ccE
Confidence            3   379999999999999998775422     23778999999999999986 66899999999999996644   578


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEe--CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-CCCeEEE
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGS--TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLMV  344 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-~dg~i~i  344 (424)
                      .+..|.+.|.+++|+|....+||+|+  .|+.|++||..+ +..+..+.. .+.|.+|.|++..+.++.+-+ .++.|.|
T Consensus       338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~l  415 (484)
T KOG0305|consen  338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITL  415 (484)
T ss_pred             EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence            88899999999999999988999976  589999999997 677777765 689999999998866665544 4678999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      |+..+.              ..+..+.+|...|..++++|+|. .+++|+.|.++++|++-..
T Consensus       416 w~~ps~--------------~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  416 WKYPSM--------------KLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             Eecccc--------------ceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence            999874              56778899999999999999999 6999999999999999765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=1.5e-30  Score=221.13  Aligned_cols=257  Identities=21%  Similarity=0.353  Sum_probs=213.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC--ceEEE
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLS  196 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s  196 (424)
                      ..-+.|.+-|.++...+   ..|.+|++||.++||+...           +....+.+|.++|.+++|.-.++  ..|++
T Consensus        99 l~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             cccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEE
Confidence            34456888888888773   4799999999999999875           66788999999999999865433  25999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC----------------
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP----------------  260 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~----------------  260 (424)
                      ++.|.++++|..+.+...  .+.+....+|...|.+++..+++. .|++|+.|.+|.||+..+.                
T Consensus       165 as~Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             ecCCceEEEEEecCchhh--hhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            999999999999876432  233445569999999999999986 6679999999999993211                


Q ss_pred             ------CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          261 ------SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       261 ------~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                            ....|+..+.+|..+|.+|.|++ .. .+.+++.|.+|+.||+.. +..+.++.+ +...+++..+|... +|+
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~-v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~-Ll~  316 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT-VIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSK-LLA  316 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcC-CC-ceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccc-eee
Confidence                  12356778899999999999998 33 689999999999999998 566666665 67899999999874 899


Q ss_pred             EEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          335 SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +|+.|..|++||.+++..           ....+.+.||.+.|.++.|+|...++|++++.||++++||++...
T Consensus       317 ~gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ecCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            999999999999998632           255678899999999999999999999999999999999998753

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4.5e-30  Score=222.48  Aligned_cols=275  Identities=19%  Similarity=0.300  Sum_probs=217.5

Q ss_pred             CCcEEEEEEeccCCceeEEEecCC------CCcEEEEEeCCCeEEEEeCCCCCCCCCC-----------CCCCCCcEEEe
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQ------NPFLIATKTVSAEVYVFDYSKHPSKPPL-----------DGACSPDLRLR  175 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~------~~~~latg~~dg~v~iw~~~~~~~~~~~-----------~~~~~~~~~~~  175 (424)
                      .+.+-+..-+--+....|++|...      ..+++|.|+.+..|.|||+.-.....+.           ....+......
T Consensus       161 e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~  240 (463)
T KOG0270|consen  161 EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSAS  240 (463)
T ss_pred             CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccc
Confidence            345555555555666677777543      2359999999999999998753222110           00011112234


Q ss_pred             cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433          176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (424)
Q Consensus       176 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~  255 (424)
                      +|+..|.+|+|+..-.+.||+||.|.+|++||+.+++.      ...+..|...|.++.|+|..+.++++|+.|++|.+.
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence            79999999999999888999999999999999998854      455567999999999999999999999999999999


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      |+|........-   ...+.|-.++|+|...+.++++..||+|+-+|+|++++++.++++|.++|.+|++++.-+.++++
T Consensus       315 D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  315 DCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             eccCccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence            999754322222   24678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      ++.|+.|++|++.....            ..+..+.-..+...++++.|+-.++++.||..+.++|||+.+..
T Consensus       392 ~s~d~~Vklw~~~~~~~------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSP------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccccceEEEEeecCCCC------------cccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            99999999999976432            22222222233467788999999899999999999999998764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=6.5e-30  Score=225.72  Aligned_cols=264  Identities=19%  Similarity=0.336  Sum_probs=215.3

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC--
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--  199 (424)
                      -.|...++-.+|+|.|- ++|+|...|+|||||....        .......++.-.++|..|+|++++.. |++.+.  
T Consensus        56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~--------~hiLKnef~v~aG~I~Di~Wd~ds~R-I~avGEGr  125 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQK--------EHILKNEFQVLAGPIKDISWDFDSKR-IAAVGEGR  125 (603)
T ss_pred             ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCc--------ceeeeeeeeecccccccceeCCCCcE-EEEEecCc
Confidence            36888999999999985 9999999999999998762        22333456667889999999999985 554443  


Q ss_pred             --CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                        =|.+.+||..+        .+..+.+|...|+++.|-|..++.+++|++|++|.+|+=.-   .+....+..|..-|+
T Consensus       126 erfg~~F~~DSG~--------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~  194 (603)
T KOG0318|consen  126 ERFGHVFLWDSGN--------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVN  194 (603)
T ss_pred             cceeEEEEecCCC--------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeeccccccccee
Confidence              24577787643        24567889999999999999999999999999999997433   233455677999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      |+.|+|+|+ +||+.+.||.|.+||=.+ ++.+..+.   +|++.|.+++|+|++. -+++++.|.+++|||+......+
T Consensus       195 ~VRysPDG~-~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  195 CVRYSPDGS-RFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eEEECCCCC-eEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEE
Confidence            999999998 699999999999999988 78888887   8999999999999996 58899999999999998876543


Q ss_pred             CCCCcC-----------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          355 TPEDAE-----------------------------DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       355 ~~~~~~-----------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ......                             ...+..+....||...|+++..+|++. .|++|+.||.|.-|+..
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSG  350 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecC
Confidence            221110                             112235677789999999999999998 69999999999999998


Q ss_pred             CccCC
Q 014433          406 ENIYH  410 (424)
Q Consensus       406 ~~~~~  410 (424)
                      .+.-.
T Consensus       351 ~g~~~  355 (603)
T KOG0318|consen  351 SGTSD  355 (603)
T ss_pred             Ccccc
Confidence            87543

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=3.5e-29  Score=236.72  Aligned_cols=238  Identities=17%  Similarity=0.281  Sum_probs=181.4

Q ss_pred             EEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-Cc-ccce
Q 014433          143 TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KS-LEAM  220 (424)
Q Consensus       143 tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~-~~~~  220 (424)
                      .|+.++.|++|+...          ..+...+.+|.+.|.+++|+|....+|++|+.||+|++||+...... .. ..++
T Consensus        49 gGG~~gvI~L~~~~r----------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~  118 (568)
T PTZ00420         49 GGGLIGAIRLENQMR----------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ  118 (568)
T ss_pred             CCCceeEEEeeecCC----------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence            356788999999876          34567889999999999999975558999999999999999764321 11 1234


Q ss_pred             eeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEE
Q 014433          221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL  300 (424)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~i  300 (424)
                      ..+.+|...|.+++|+|++..++++++.|++|+|||++++..   +..+. |...|.+++|+|+|. +|++++.|+.|+|
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrI  193 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHI  193 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEE
Confidence            567789999999999999988888999999999999998763   33443 567899999999998 6889999999999


Q ss_pred             EECCCCCCcceEecCCCCCEEEE-----EEcCCCCcEEEEEECCC----eEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433          301 FDLRKISTALHTFDSHKEEVFQV-----GWNPKNETILASCCLGR----RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG  371 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~-----~~sp~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      ||+++ +..+..+.+|.+.+...     .|++++. +|++++.|+    .|+|||++....           +.....+.
T Consensus       194 wD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~-----------pl~~~~ld  260 (568)
T PTZ00420        194 IDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTS-----------ALVTMSID  260 (568)
T ss_pred             EECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCC-----------ceEEEEec
Confidence            99998 67788899998765443     3457775 577766664    799999986431           12222333


Q ss_pred             CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .+.+.+.-....+++. ++++|+.|+.|++|++..+.+
T Consensus       261 ~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        261 NASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             CCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCcE
Confidence            4444333333344466 788999999999999987643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.3e-30  Score=241.27  Aligned_cols=249  Identities=20%  Similarity=0.348  Sum_probs=210.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .-.|.++|..++|+|+.+ ++++|+.|-.|+||++..          .+.+.++.||-.-|..+.|++.-+ .++++|.|
T Consensus        47 FdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~----------rrclftL~GHlDYVRt~~FHheyP-WIlSASDD  114 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT----------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDD  114 (1202)
T ss_pred             hhccCCccceeeecCCCC-eEEecCCccEEEEEeccc----------ceehhhhccccceeEEeeccCCCc-eEEEccCC
Confidence            347999999999999998 899999999999999988          677889999999999999999888 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC--C---------------
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--S---------------  263 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~--~---------------  263 (424)
                      .+|+||+..++      .++..+.+|...|.|.+|+|... ++++++-|.+|+|||+..-+.  .               
T Consensus       115 QTIrIWNwqsr------~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  115 QTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             CeEEEEeccCC------ceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            99999999877      46788899999999999999875 678999999999999863110  0               


Q ss_pred             ---------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEE
Q 014433          264 ---------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       264 ---------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                               ...+.+.+|...|+.++|+|.-+ +|++|++|+.|++|.+...+ -.+.+..+|.+.|+++-|+|... ++
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lI  265 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LI  265 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-ee
Confidence                     01234578999999999999988 89999999999999987522 23566789999999999999885 89


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ++.+.|++|+|||+...              ..+.+++.....-+.++-+|..+ +++. +.|+-+.||.+..
T Consensus       266 lSnsEDksirVwDm~kR--------------t~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleR  322 (1202)
T KOG0292|consen  266 LSNSEDKSIRVWDMTKR--------------TSVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLER  322 (1202)
T ss_pred             EecCCCccEEEEecccc--------------cceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcc
Confidence            99999999999999875              34555555566788888899888 5555 5566688888763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.6e-31  Score=229.19  Aligned_cols=246  Identities=20%  Similarity=0.317  Sum_probs=210.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .....|.+++|+|..++-+|+.++ -.+.||+..+          ......+......+++++|..+|. +|++|...|.
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~----------~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~   91 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT----------RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGH   91 (487)
T ss_pred             cccCcceeEecCCCCCCceEEecc-cEEEEEecch----------hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCc
Confidence            445789999999998877887654 5799999877          455556667788899999999998 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |+|+|+.+.      ..++.+.+|+.++..+.|+|.+..+|++|++|+.+++||+.+...   ...+.+|+..|.|.+|+
T Consensus        92 V~vfD~k~r------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen   92 VKVFDMKSR------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDIS  162 (487)
T ss_pred             EEEeccccH------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccc
Confidence            999996542      346778899999999999999999999999999999999998663   55778999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      |.+.++++||++||.|++||+|.....+.++. |..+|-++.+-|.|. ++|+++. ..|+|||+..+.           
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~-----------  228 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGG-----------  228 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCc-----------
Confidence            99999999999999999999998656666665 799999999999985 6777664 469999998764           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                        +++.....|...|+++++..++. .|+|+|-|+.|++|++.+
T Consensus       229 --qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~  269 (487)
T KOG0310|consen  229 --QLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTN  269 (487)
T ss_pred             --eehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccc
Confidence              55555566999999999999998 689999999999999654

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5e-29  Score=234.64  Aligned_cols=256  Identities=18%  Similarity=0.303  Sum_probs=189.7

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|.+..+||+|+.||+|+|||+.......   ....+...+.+|...|.+++|+|.+.++|++|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            358999999999999444589999999999999997621110   11245678899999999999999876689999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC-eeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~v  279 (424)
                      ++|+|||++++.      .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++..   +..+..|.+. +..+
T Consensus       148 gtVrIWDl~tg~------~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        148 MVVNVWDVERGK------AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRC  217 (493)
T ss_pred             CEEEEEECCCCe------EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEE
Confidence            999999998763      3456678999999999999986 667999999999999998664   6667778764 4567


Q ss_pred             EecCCCCeEEEEE---eCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEE-CCCeEEEeeCCCCCccc
Q 014433          280 AFNPFNEWILATG---STDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCC-LGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       280 ~~~~~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~-~dg~i~iwd~~~~~~~~  354 (424)
                      .|.+++..++++|   +.|+.|++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+..+.   
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~---  293 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNER---  293 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCc---
Confidence            8898877555444   2478999999998766766655443 4566678899986 566665 69999999998753   


Q ss_pred             CCCCcCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          355 TPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                 +++.. ..+..++..++|.|.-. +  =...--..+++++...
T Consensus       294 -----------~~~~~~~~s~~~~~g~~~~pk~~-~--dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        294 -----------LTFCSSYSSVEPHKGLCMMPKWS-L--DTRKCEIARFYALTYH  333 (493)
T ss_pred             -----------eEEEeeccCCCCCcceEeccccc-c--cccceeeeEEEEecCC
Confidence                       22222 23455678888888532 1  1122234456665544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-30  Score=231.51  Aligned_cols=239  Identities=22%  Similarity=0.337  Sum_probs=202.0

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ..-+|.+.+|-+.. +.+++|+.|..|+||++.+          ...+..+.+|..-|.+++.+|..+ +++++|.|-+|
T Consensus        54 ~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt----------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~i  121 (794)
T KOG0276|consen   54 SEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT----------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTI  121 (794)
T ss_pred             cccchhhheeeecc-ceEEEecCCceEEEEeccc----------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEE
Confidence            34588888888844 5899999999999999998          677889999999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++||-+.     .+.+.+.+.+|...|.+++|+|.+.+.||+++-|++|+||.+.++.   +..++.+|...|+|+.+-+
T Consensus       122 KlW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~  193 (794)
T KOG0276|consen  122 KLWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYT  193 (794)
T ss_pred             EEeeccC-----ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEecc
Confidence            9999874     3457788999999999999999999999999999999999998855   5788899999999999987


Q ss_pred             CC-CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          284 FN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       284 ~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      -| +.+|++|++|.+|+|||..+ +.+++++.+|...|..+.|+|.-+ ++++|+.||+++||+..+.+.+...      
T Consensus       194 ~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tL------  265 (794)
T KOG0276|consen  194 GGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTL------  265 (794)
T ss_pred             CCCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhh------
Confidence            54 23699999999999999998 899999999999999999999986 8999999999999998876543322      


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcE
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL  399 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i  399 (424)
                              .-...+|++++-.+.+. .++.|.+.|.|
T Consensus       266 --------n~gleRvW~I~~~k~~~-~i~vG~Deg~i  293 (794)
T KOG0276|consen  266 --------NYGLERVWCIAAHKGDG-KIAVGFDEGSV  293 (794)
T ss_pred             --------hcCCceEEEEeecCCCC-eEEEeccCCcE
Confidence                    12233566666666555 45555544443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.1e-30  Score=214.77  Aligned_cols=281  Identities=18%  Similarity=0.284  Sum_probs=215.0

Q ss_pred             CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCC-----CC--CCCCCC-CCcEEEecCCCceeEE
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS-----KP--PLDGAC-SPDLRLRGHSTEGYGL  184 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~-----~~--~~~~~~-~~~~~~~~h~~~v~~l  184 (424)
                      ..+.+....-.|.+++.+.+|+|+|. ++|||+.|..|+|+|+.....     +.  ...... -.+.++..|..+|+++
T Consensus       100 ~~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l  178 (430)
T KOG0640|consen  100 PSEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL  178 (430)
T ss_pred             CcccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence            34555556668999999999999997 999999999999999974211     11  011112 3356788999999999


Q ss_pred             EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      .|+|... +|++|+.|++|+++|+......+.++   .++ ...+|.++.|+|.|.+++ +|..-.++++||+.+-++..
T Consensus       179 ~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K---~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  179 DFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFK---VFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             eecchhh-eEEeccCCCeEEEEecccHHHHHHHH---Hhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEee
Confidence            9999776 89999999999999997654322222   222 346899999999998665 88889999999999866533


Q ss_pred             CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCC-CCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHK-EEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~-~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      +-..-..|.+.|+++.+++.++ +.++|+.||.|++||--+ .+++.++. +|. ..|.+..|..+++ ++++.+.|..+
T Consensus       253 sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~v  329 (430)
T KOG0640|consen  253 SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTV  329 (430)
T ss_pred             ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCccee
Confidence            2233356899999999999998 899999999999999877 67777765 454 5799999999996 68899999999


Q ss_pred             EEeeCCCCCcccCCCCcC------------------------CCC-----------CeeeEEEcCCCCCcceEEeCCCCC
Q 014433          343 MVWDLSRIDEEQTPEDAE------------------------DGP-----------PELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~------------------------~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      ++|.+.+++..+......                        ...           .+.-...-||++.+..+.-+|.++
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP  409 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence            999999876543222210                        000           001111237999999999999999


Q ss_pred             cEEEEEeCCCcEEEEec
Q 014433          388 WVISSVAEDNILQIWQM  404 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~  404 (424)
                       .+++++.|-.+++|--
T Consensus       410 -~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  410 -AFMTCSDDFRARFWYR  425 (430)
T ss_pred             -ceeeecccceeeeeee
Confidence             6999999999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.5e-31  Score=224.53  Aligned_cols=254  Identities=16%  Similarity=0.310  Sum_probs=207.2

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..-+|.+.|.|++=+|.....+|+|+.||.|+|||+..          .....++.+|.+.|.+|++..  . .+++++.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------R~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgd  127 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------RECIRTFKAHEGLVRGICVTQ--T-SFFTVGD  127 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhh----------hhhhheeecccCceeeEEecc--c-ceEEecC
Confidence            34689999999999997766899999999999999987          566788999999999999976  3 5999999


Q ss_pred             CCcEEEEeCCCCCC------------------------C--------CcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          200 DAQICLWDINAAPK------------------------N--------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       200 dg~i~iwd~~~~~~------------------------~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      |.+|+.|.+.....                        .        ....++..+.-....|.++.|+|....+|++|+
T Consensus       128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~  207 (433)
T KOG0268|consen  128 DKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA  207 (433)
T ss_pred             CcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence            99999998543210                        0        000234444444567889999999999999999


Q ss_pred             CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       248 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      .|+.|.+||+|+....+.+.    ....-+.|+|+| ..+.|++|+.|..++.||+|....++..+.+|.++|.++.|||
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             cCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            99999999999977543332    245678899999 5557999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .|+ -+++||.|.+|+||..+.+...           ...  +.-....|.++.|+.|.+ .++|||+|+.|++|.-..
T Consensus       283 tG~-EfvsgsyDksIRIf~~~~~~SR-----------diY--htkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  283 TGQ-EFVSGSYDKSIRIFPVNHGHSR-----------DIY--HTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             Ccc-hhccccccceEEEeecCCCcch-----------hhh--hHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence            997 5899999999999999875421           111  111234699999999999 599999999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.4e-30  Score=227.89  Aligned_cols=269  Identities=17%  Similarity=0.233  Sum_probs=203.7

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC---------------------------------
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL---------------------------------  164 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~---------------------------------  164 (424)
                      .++.-.|...|.++++.|.|. .|++|+.|.+|++||+.........                                 
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            344556888999999999997 7999999999999998763221100                                 


Q ss_pred             ----------------CCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433          165 ----------------DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG  228 (424)
Q Consensus       165 ----------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  228 (424)
                                      .....-....+||...+++.+|+|.....|++++.||++++||++..+....+-......+..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence                            0000011234678899999999999988999999999999999987654322211112223455


Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKTVKLFDLRKI  306 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  306 (424)
                      +++.++|+++++ +||+|+.||.|.+|+.+..........-.+|..  .|+||+|+++|+ +|++-+.|+++++||+|+.
T Consensus       319 ~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  319 PVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             CceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc
Confidence            789999999997 588999999999999977654444455567877  999999999998 5889999999999999999


Q ss_pred             CCcceEecCCC--CCEEEEEEcCCCCcEEEEEEC------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          307 STALHTFDSHK--EEVFQVGWNPKNETILASCCL------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       307 ~~~~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      .+++....+-.  -+-+.++|||+.+ ++++|..      .|.+.+||..+.              ..++.+.-....|.
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~--------------d~v~ki~i~~aSvv  461 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL--------------DTVYKIDISTASVV  461 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce--------------eeEEEecCCCceEE
Confidence            99988876543  3568899999986 7888764      467999998875              34444444466789


Q ss_pred             eEEeCCCCCcEEEEEeCCCcEEEE-ecC
Q 014433          379 DFSWNPCEDWVISSVAEDNILQIW-QMA  405 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~dg~i~vw-~~~  405 (424)
                      .+.|+|.-+. |..|+.||.++|+ |..
T Consensus       462 ~~~WhpkLNQ-i~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  462 RCLWHPKLNQ-IFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             EEeecchhhh-eeeecCCCceEEEECcc
Confidence            9999999885 5556668888875 443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=207.37  Aligned_cols=321  Identities=19%  Similarity=0.332  Sum_probs=240.7

Q ss_pred             hhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 014433           35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (424)
Q Consensus        35 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (424)
                      ++.+.-+||.+..+|.-.....       .++.+|++... ..|.+.|.++...                        .+
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~-------~rla~gS~~Ee-~~Nkvqiv~ld~~------------------------s~   85 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKK-------FRLAVGSFIEE-YNNKVQIVQLDED------------------------SG   85 (364)
T ss_pred             EEEecCCCceeeeccccCCCcc-------eeEEEeeeccc-cCCeeEEEEEccC------------------------CC
Confidence            4567789999999998764333       89999997654 6688888887411                        12


Q ss_pred             cEEEEEEeccCCceeEEEecCCC----CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433          115 KVQIIQQINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~----~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  190 (424)
                      .+.....+.|+-+++.+.|.|+.    +.+|||.+  ..+|+|.+............. ....-..+..++++..|+...
T Consensus        86 e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L-~~~kns~~~aPlTSFDWne~d  162 (364)
T KOG0290|consen   86 ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVL-NNNKNSEFCAPLTSFDWNEVD  162 (364)
T ss_pred             ceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhh-ccCcccccCCcccccccccCC
Confidence            23333347899999999999965    45788754  479999998532222110000 011123467799999999999


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      ++++.++|-|-+..|||++++..   ......+-.|...|.+|+|...+..+||+++.||.+++||+|.......+..-.
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence            98999999999999999998622   122345667999999999999999999999999999999999877644444434


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ....+...++|+++..+++|+-..|+ .|.|.|+|.+..++..+..|++.|+.++|.|.....+++++.|..+.|||+..
T Consensus       240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            44678899999999998899877664 79999999999999999999999999999999999999999999999999987


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      ......      ..+.+.+.   -.+.|+.+.|++..+.-|+.+. ++.+.+-+
T Consensus       320 ~~~~~~------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiLR  363 (364)
T KOG0290|consen  320 MPRENG------EDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEILR  363 (364)
T ss_pred             ccccCC------CCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEEe
Confidence            643111      11223333   2456999999987654566544 55666543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.1e-31  Score=241.61  Aligned_cols=251  Identities=25%  Similarity=0.424  Sum_probs=210.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      -.+..++|.....++|||++..|.|.+||+...       ...+.+..+..|...+.+++|++..+++|++|+.||+|++
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~  160 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS-------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC  160 (839)
T ss_pred             eehhhcccccchhhhheeecCCCcEEEEecCcc-------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence            356678898767789999999999999999872       1223345678899999999999999999999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      ||++..+.      ...+.+....|.+++|+|...+.|+++.+.|.+++||+|.+..  ....+.+|.++|.|+.|+|++
T Consensus       161 ~DlR~~~S------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  161 WDLRSKKS------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             Eeeecccc------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCC
Confidence            99987743      3345557889999999999999999999999999999998764  566778999999999999976


Q ss_pred             CeEEEEEeCCCcEEEEECCCC-CCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCcccCCCCcCCC
Q 014433          286 EWILATGSTDKTVKLFDLRKI-STALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      . +||||+.|+.|+|||.... ..++.++.. ..+|.+++|-|..++.||+++.  |-.|+|||++.             
T Consensus       233 ~-~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-------------  297 (839)
T KOG0269|consen  233 E-WLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-------------  297 (839)
T ss_pred             c-eeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecc-------------
Confidence            6 7999999999999999852 234555543 5799999999999888998876  77899999987             


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      |.....++..|...++.++|....+-++.+++.||+|..-.++.
T Consensus       298 PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  298 PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            33556778889999999999876666889999999887655543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.3e-28  Score=192.11  Aligned_cols=275  Identities=20%  Similarity=0.353  Sum_probs=205.4

Q ss_pred             CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC-----CCCCCCCcEEEecCCCceeEEEe
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-----LDGACSPDLRLRGHSTEGYGLSW  186 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~  186 (424)
                      ..+.|+.+..+.-...|.+++|+|.|. +.|+|+...+.+|...........     ..........-+.|.+.|+|.+|
T Consensus        19 ~k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w   97 (350)
T KOG0641|consen   19 EKKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW   97 (350)
T ss_pred             cccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence            356788888899999999999999986 899999999999987654211110     00001112334568999999999


Q ss_pred             cCCCCceEEEEeCCCcEEEEeCCCCCCCCcc----------------------------------------------cce
Q 014433          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSL----------------------------------------------EAM  220 (424)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------------------~~~  220 (424)
                      +|.|. +|++|++|.+|++..++.......-                                              +..
T Consensus        98 s~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~  176 (350)
T KOG0641|consen   98 SPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF  176 (350)
T ss_pred             cCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence            99998 8999999999999877654321110                                              122


Q ss_pred             eeeecCCccEeeEE-EecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-ec---cCCCeeEEEecCCCCeEEEEEeCC
Q 014433          221 QIFKVHEGVVEDVA-WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VA---HQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       221 ~~~~~~~~~v~~~~-~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                      ..+.+|.+.|.++- |+   ..+|++|+.|.+|++||+|-+.+...+..- ..   ..+.|.+++..|.|+ +|++|..|
T Consensus       177 ~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~d  252 (350)
T KOG0641|consen  177 HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHAD  252 (350)
T ss_pred             eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCC
Confidence            23334444444431 22   247889999999999999987652222111 11   235799999999998 89999999


Q ss_pred             CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433          296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS  375 (424)
Q Consensus       296 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  375 (424)
                      .+..+||+|. +++++.+..|...|.++.|+|.. .++++|+.|..|++-|+...-..          ...+.+...|..
T Consensus       253 ssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~----------el~~~vv~ehkd  320 (350)
T KOG0641|consen  253 SSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAH----------ELPIMVVAEHKD  320 (350)
T ss_pred             CceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhh----------cCceEEEEeccC
Confidence            9999999998 89999999999999999999987 58999999999999998653211          123455567888


Q ss_pred             CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          376 KISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .+..+.|+|+.- -+++.+.|.++.+|-+.
T Consensus       321 k~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  321 KAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            899999999987 57888999999999874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.8e-30  Score=204.11  Aligned_cols=260  Identities=22%  Similarity=0.367  Sum_probs=206.1

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC--CCCceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK--FKEGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~d  200 (424)
                      .|.+.|..+...--|. .|||+++|++|+||.+...       ....++..|.+|.++|+.++|..  .|. +||+++.|
T Consensus         9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n-------~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYD   79 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNN-------GQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYD   79 (299)
T ss_pred             hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCC-------CCceeeeEecCCCCCeeEEeecccccCc-EeeEeecC
Confidence            5788888877776676 7999999999999999872       33467889999999999999964  454 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |.|.||.-..+.    .........|...|++++|.|.+ ..+|++++.||.|.|.+.+............+|.-.|+++
T Consensus        80 gkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV  155 (299)
T KOG1332|consen   80 GKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV  155 (299)
T ss_pred             ceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence            999999987652    23445567899999999999964 3567899999999999998763333344556899999999


Q ss_pred             EecCC---C----------CeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCC---CcEEEEEECCCeE
Q 014433          280 AFNPF---N----------EWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKN---ETILASCCLGRRL  342 (424)
Q Consensus       280 ~~~~~---~----------~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~---~~~l~s~~~dg~i  342 (424)
                      +|.|-   |          .+-|++|+.|..|+||+..+.. ..-.++.+|...|..++|.|.-   ...+|+|+.||++
T Consensus       156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            99986   3          1249999999999999998732 2334588999999999999964   4579999999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .||..+...++        ....++.   .....++.+.|++.|. +|+.++.|+.|.+|.-+..
T Consensus       236 iIwt~~~e~e~--------wk~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  236 IIWTKDEEYEP--------WKKTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEEEecCccCc--------ccccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCC
Confidence            99988743221        1123333   2456799999999999 7888888999999987654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=228.93  Aligned_cols=261  Identities=23%  Similarity=0.354  Sum_probs=219.0

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      .++++++.-. .+.+..|.|.+ .++++|..+|.+.|||+..          ...+.+.++|.+.+++++.+|++. .++
T Consensus       404 ~kciRTi~~~-y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS----------~~l~Eti~AHdgaIWsi~~~pD~~-g~v  470 (888)
T KOG0306|consen  404 LKCIRTITCG-YILASKFVPGD-RYIVLGTKNGELQVFDLAS----------ASLVETIRAHDGAIWSISLSPDNK-GFV  470 (888)
T ss_pred             cceeEEeccc-cEEEEEecCCC-ceEEEeccCCceEEEEeeh----------hhhhhhhhccccceeeeeecCCCC-ceE
Confidence            4455555444 88899999966 4899999999999999987          445566779999999999999998 599


Q ss_pred             EEeCCCcEEEEeCCCCCCC-----C--cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          196 SGSDDAQICLWDINAAPKN-----K--SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~-----~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                      +||.|.+|++||..--...     +  .+...+.+. -...|.|++++|+++ ++|++--|.+++||-+.+-+   ....
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK---Ffls  545 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK---FFLS  545 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee---eeee
Confidence            9999999999997532210     1  111112222 457899999999997 56788899999999999854   4777


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      +.+|.-||.||..+|++. +++||+.|..|++|-+.- +.+-+.+.+|...|.++.|.|.. +++.+|+.|+.|+-||-.
T Consensus       546 LYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  546 LYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             ecccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechh
Confidence            889999999999999988 899999999999999986 88999999999999999999976 589999999999999987


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                      ..              ..+..+.+|...|++++.+|+|. +++|+|.|.+|++|......+--+
T Consensus       623 kF--------------e~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  623 KF--------------EEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             hh--------------hhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccCcceeee
Confidence            75              66778899999999999999999 699999999999999988755433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.97  E-value=8.3e-29  Score=203.40  Aligned_cols=313  Identities=20%  Similarity=0.267  Sum_probs=232.7

Q ss_pred             eEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEE
Q 014433           63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA  142 (424)
Q Consensus        63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~la  142 (424)
                      .-+|++||..-. .+|.+.+.+++-.                        .+.+.....+.|.+.|..|+-+|.++.+|+
T Consensus        26 ~icFlvgTnslK-~dNqVhll~~d~e------------------------~s~l~skvf~h~agEvw~las~P~d~~ila   80 (370)
T KOG1007|consen   26 HICFLVGTNSLK-EDNQVHLLRLDSE------------------------GSELLSKVFFHHAGEVWDLASSPFDQRILA   80 (370)
T ss_pred             ceEEEEeccccC-CcceeEEEEecCc------------------------cchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence            468999997765 4588888877311                        112222334567899999999999988999


Q ss_pred             EEeCC-------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433          143 TKTVS-------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN  214 (424)
Q Consensus       143 tg~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  214 (424)
                      |+..+       ..+.||.+........ ......+..+. .+-+.|.|+.|.|++. .+++-. |..|.+|++......
T Consensus        81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~-~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~  157 (370)
T KOG1007|consen   81 TVYNDTSDSGVLTGAAIWQIPEPLGQSN-SSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKI  157 (370)
T ss_pred             EEEeccCCCcceeeEEEEecccccCccc-cchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcch
Confidence            87653       3577999987433211 11122233343 3556899999999877 466554 889999999877652


Q ss_pred             -CcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEE
Q 014433          215 -KSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       215 -~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg  292 (424)
                       ..+. ......+....++-+|+|. +.+.+ ....|+++..||+|+......+  -.+|...|..+.|+|+.+++|+++
T Consensus       158 vaev~-ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~  233 (370)
T KOG1007|consen  158 VAEVL-SSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTC  233 (370)
T ss_pred             heeec-ccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceEEEEEc
Confidence             2221 1112236678889999993 33455 4457899999999987653333  357889999999999999999999


Q ss_pred             eCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-------------
Q 014433          293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA-------------  359 (424)
Q Consensus       293 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------  359 (424)
                      +.||.|+|||.|+...|++.+.+|...|.++.|+|...+++++++.|..|.+|.......++.....             
T Consensus       234 gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee  313 (370)
T KOG1007|consen  234 GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE  313 (370)
T ss_pred             CCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence            9999999999999999999999999999999999998899999999999999988765432211110             


Q ss_pred             --CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          360 --EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       360 --~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                        ...+...+.++..|...|++++|+.-.++++++-+.||.+.|=++...
T Consensus       314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence              012234566788899999999999999999999999999998776543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=218.35  Aligned_cols=242  Identities=19%  Similarity=0.241  Sum_probs=205.6

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .....|.++.|..||. ++|+|...|.|+|||..+          ...+..+.+|..++..+.|+|.+..+|++|+.|+.
T Consensus        66 rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~----------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v  134 (487)
T KOG0310|consen   66 RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKS----------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV  134 (487)
T ss_pred             hhccceeEEEeecCCe-EEEccCCcCcEEEecccc----------HHHHHHHhhccCceeEEEecccCCeEEEecCCCce
Confidence            3567899999999997 999999999999999654          34567788999999999999999989999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +++||+.+..      ....+.+|++.|.+.+|+|..++++++|+.||.|++||+|....  .+.. ..|..+|.++.+-
T Consensus       135 ~k~~d~s~a~------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~e-lnhg~pVe~vl~l  205 (487)
T KOG0310|consen  135 VKYWDLSTAY------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVE-LNHGCPVESVLAL  205 (487)
T ss_pred             EEEEEcCCcE------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEE-ecCCCceeeEEEc
Confidence            9999998763      24467899999999999999999999999999999999998642  2333 3689999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      |.|. ++|+++ ...|++||+.+.++.+..+..|...|+|+++..++. .|++++-|+.|++||+.+.            
T Consensus       206 psgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~------------  270 (487)
T KOG0310|consen  206 PSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY------------  270 (487)
T ss_pred             CCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccce------------
Confidence            9887 687776 458999999987788877777999999999999884 7899999999999997663            


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                        +++..+. ..++|.+++.+|++. .++.|..+|.+.+=+
T Consensus       271 --Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  271 --KVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRR  307 (487)
T ss_pred             --EEEEeee-cccceeeEEecCCCc-eEEEecccceeeeeh
Confidence              4444443 467899999999988 688888899877663

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.1e-29  Score=202.90  Aligned_cols=259  Identities=18%  Similarity=0.325  Sum_probs=209.5

Q ss_pred             eccCCceeEEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          122 INHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      -+|..+|-.++|+|  ....+|++++.||.-.+-+-++          ..-+.++.+|.+.|++...+.+.. ..++++.
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----------gdwigtfeghkgavw~~~l~~na~-~aasaaa   79 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----------GDWIGTFEGHKGAVWSATLNKNAT-RAASAAA   79 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----------CCcEEeeeccCcceeeeecCchhh-hhhhhcc
Confidence            37999999999997  2346899999999888777666          445788999999999999988766 6889999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |-+-++||.-++....++      . |..-|..++|+.+..+++ +|+.+..++|||++.++.  +...+.+|.+.|..+
T Consensus        80 dftakvw~a~tgdelhsf------~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSF------E-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTV  149 (334)
T ss_pred             cchhhhhhhhhhhhhhhh------h-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCC--CchhhcCCCCcceeE
Confidence            999999999887543333      2 788999999999988765 999999999999998774  667788999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      .|..... .|++.+.|++|++||.|+ +..++++.. +.+|+++..+++|+  +++....+.|.+||..+....+....+
T Consensus       150 ~wc~eD~-~iLSSadd~tVRLWD~rT-gt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k~P  224 (334)
T KOG0278|consen  150 LWCHEDK-CILSSADDKTVRLWDHRT-GTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYKMP  224 (334)
T ss_pred             EEeccCc-eEEeeccCCceEEEEecc-CcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEeccccccceeeccCc
Confidence            9998766 577889999999999999 677888775 67899999999996  456667778999998876654433221


Q ss_pred             C------CCCC---------------------eeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          360 E------DGPP---------------------ELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       360 ~------~~~~---------------------~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .      -.|.                     +-+.. ..+|.++|.++.|+|+|. +.++|++||+|++|....+
T Consensus       225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence            1      0010                     11222 368999999999999999 8999999999999998765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.1e-29  Score=207.84  Aligned_cols=259  Identities=19%  Similarity=0.270  Sum_probs=213.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      +++....+.|.+|+|++. ++++|+.||.|.||+..+......  ........+--+..+|.|++|+.+.. +|++|+.|
T Consensus       209 KFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKD--LkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD  284 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKD--LKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD  284 (508)
T ss_pred             ecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhh--hhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence            456778899999999997 899999999999999987211110  11222334445788999999999877 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |.|++|.++++.+.      +.+. .|...|+++.|+.++.+++ +++.|.++++.-+++++.   +..+.+|.+.|+..
T Consensus       285 GkIKvWri~tG~Cl------RrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  285 GKIKVWRIETGQCL------RRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEA  354 (508)
T ss_pred             CcEEEEEEecchHH------HHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchh---HHHhcCccccccce
Confidence            99999999998653      4443 7999999999999998776 999999999999999886   77888999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      .|.++|.+ +++++.||+|++|+..+ ..++.+++.  ...+|+++..-|..+..++.|...++|.|-++..        
T Consensus       355 ~ft~dG~~-iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--------  424 (508)
T KOG0275|consen  355 TFTDDGHH-IISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--------  424 (508)
T ss_pred             EEcCCCCe-EEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--------
Confidence            99999985 88999999999999998 788888874  3458999999998877899999999999999865        


Q ss_pred             CcCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          358 DAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                             +.+..+...   .+...+...+|.|. .+.+.++|+.++.|.+.++.++.
T Consensus       425 -------QvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  425 -------QVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             -------eEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCceee
Confidence                   445544322   23456678999999 48889999999999999997764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3e-28  Score=232.80  Aligned_cols=271  Identities=22%  Similarity=0.344  Sum_probs=211.3

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC--------CCCCCCCCCCCcEEEecCCCceeEEEec
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP--------SKPPLDGACSPDLRLRGHSTEGYGLSWS  187 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~l~~~  187 (424)
                      ..+.....|.+.|+|++|+|+|. +||+|++|+.|.||......        ........++....+.+|...|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            34455678999999999999997 89999999999999988410        1112234567788899999999999999


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      |++. +|++++.|++|.|||..+.      ..+..+.+|.+.|-.+.|.|-|+ .||+-+.|++|+||++..-...+.+.
T Consensus       139 p~~~-~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  139 PDDS-LLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             CCcc-EEEEecccceEEEEccccc------eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeec
Confidence            9887 8999999999999999765      46778899999999999999997 56899999999999976633211121


Q ss_pred             eee---ccCCCeeEEEecCCCCeEEEEEe-CC---CcEEEEECCCCCCcceEecCCCCCEEEEEEcCC--------C---
Q 014433          268 SVV---AHQSEVNCLAFNPFNEWILATGS-TD---KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------N---  329 (424)
Q Consensus       268 ~~~---~~~~~v~~v~~~~~~~~~l~tg~-~d---g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~--------~---  329 (424)
                      ...   .-...+..+.|+|+|.+ |++.. ..   .++.|.+-.+ .+.-..+-+|..++.+++|+|.        |   
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~-las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHH-LASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCe-ecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence            111   12346788999999995 66643 22   3688887655 5667788899999999999982        1   


Q ss_pred             -C----cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          330 -E----TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       330 -~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                       .    .++|+|+.|++|.||.....+             .++..+.-....|.+++|+|||. .|..+|.||+|.+..+
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~R-------------Pl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPR-------------PLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHF  354 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCC-------------chhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEc
Confidence             1    178999999999999986532             22222333456799999999999 5777799999999999


Q ss_pred             CCccCCC
Q 014433          405 AENIYHD  411 (424)
Q Consensus       405 ~~~~~~~  411 (424)
                      +...+-.
T Consensus       355 ee~ElG~  361 (942)
T KOG0973|consen  355 EEKELGV  361 (942)
T ss_pred             chHHhCc
Confidence            9886643

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.9e-27  Score=222.16  Aligned_cols=240  Identities=15%  Similarity=0.220  Sum_probs=175.1

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|.+.|.+++|+|+...+||+|+.||+|+||++........  ....+...+.+|...|.+++|+|++..+|++++
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            344589999999999997556999999999999999975211100  011345568899999999999999886678999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|++|++||++++..      ...+. |...|.+++|+|++. +|++++.|+.|+|||++++..   +..+.+|.+.+.+
T Consensus       146 ~DgtIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s  214 (568)
T PTZ00420        146 FDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNT  214 (568)
T ss_pred             CCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE---EEEEecccCCcee
Confidence            999999999987642      22233 567899999999987 667888999999999998764   6677788876543


Q ss_pred             E-----EecCCCCeEEEEEeCC----CcEEEEECCCCCCcceEecCCC--CCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          279 L-----AFNPFNEWILATGSTD----KTVKLFDLRKISTALHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       279 v-----~~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      .     .|++++.+ |++++.|    +.|+|||+++...++..+..+.  +.+.. .|.++...++++|+.|+.|++|++
T Consensus       215 ~~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        215 KNIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EEEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEc
Confidence            3     34577775 6665555    3799999998677777665332  23333 344443358899999999999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE  386 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  386 (424)
                      .....            ..+..+ .+..++.+++|.|..
T Consensus       293 ~~~~~------------~~l~~~-~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        293 SLGSI------------RKVNEY-KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cCCcE------------Eeeccc-ccCCCccceEEcccc
Confidence            76421            112222 245677889999864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=225.32  Aligned_cols=252  Identities=23%  Similarity=0.362  Sum_probs=212.3

Q ss_pred             CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      ..+........+|.+.|.++++.. +..++++|+.|.+++|||+.+          ......+.+|...|.++...+   
T Consensus       236 ~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s----------g~C~~~l~gh~stv~~~~~~~---  301 (537)
T KOG0274|consen  236 NNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST----------GECTHSLQGHTSSVRCLTIDP---  301 (537)
T ss_pred             ccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC----------CcEEEEecCCCceEEEEEccC---
Confidence            344455555789999999999987 556999999999999999887          677888999999999998754   


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      .++++|+.|.+|++|++.++      ..+..+.+|.++|+++..+  +. ++++|+.||+|++||+++.+.   +..+.+
T Consensus       302 ~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~c---l~sl~g  369 (537)
T KOG0274|consen  302 FLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKC---LKSLSG  369 (537)
T ss_pred             ceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhcee---eeeecC
Confidence            36888999999999999876      3466677799999999988  33 667999999999999998664   888889


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |...|.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-|..+.+..   .+|++++.|+.|++||...+ 
T Consensus       370 H~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~-  443 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEG-  443 (537)
T ss_pred             CcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccC-
Confidence            9999999988865 4 6899999999999999984389999999999997777754   47999999999999999886 


Q ss_pred             cccCCCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                                   +++..+.+ |...|..+++.  .. .+++++.||.+++||+..+.+..
T Consensus       444 -------------~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  444 -------------ECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             -------------ceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCchhh
Confidence                         55666666 66778888886  33 68888999999999999986644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.9e-28  Score=195.02  Aligned_cols=251  Identities=17%  Similarity=0.290  Sum_probs=205.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|...|.+++|+-+|. .+|+|+.|+++.+|++...        .........+|.+.|-.++|+|..+.+|++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~--------r~~~~~~~~gh~~svdql~w~~~~~d~~atas   84 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERD--------RFRKELVYRGHTDSVDQLCWDPKHPDLFATAS   84 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecch--------hhhhhhcccCCCcchhhheeCCCCCcceEEec
Confidence            34457899999999999997 7999999999999999872        23334567789999999999999888999999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|.+|++||++.++.      ...... ...-.-+.|+|++.++ ++++.|..|.+.|.++.+.   ... ......++-
T Consensus        85 ~dk~ir~wd~r~~k~------~~~i~~-~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~---~~~-~~~~~e~ne  152 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGKC------TARIET-KGENINITWSPDGEYI-AVGNKDDRITFIDARTYKI---VNE-EQFKFEVNE  152 (313)
T ss_pred             CCceEEEEEeccCcE------EEEeec-cCcceEEEEcCCCCEE-EEecCcccEEEEEecccce---eeh-hcccceeee
Confidence            999999999998754      333332 3334467899999865 5889999999999998653   222 233556788


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      ++|+-.+. +|+.....|.|.|..... -+++..+++|.....||.|+|+|+ +||+|+.|..+.+||+...        
T Consensus       153 ~~w~~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL--------  221 (313)
T KOG1407|consen  153 ISWNNSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL--------  221 (313)
T ss_pred             eeecCCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh--------
Confidence            99997666 455555579999999987 689999999999999999999996 7999999999999999864        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                            .+++.+..+.-+|..+.|+.+|+ +||++++|-.|-|=.+.+|.
T Consensus       222 ------iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  222 ------ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             ------hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC
Confidence                  55677778888999999999999 79999999999877776663

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.9e-27  Score=193.83  Aligned_cols=276  Identities=17%  Similarity=0.315  Sum_probs=208.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC-CCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg  201 (424)
                      +|.+-|+++.|.+.|+ .+|+|+.|++|+|||....      .+.+......+.|.+.|..+.|.+. -.+.+|+++.|+
T Consensus        11 ~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr   83 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSD------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR   83 (361)
T ss_pred             CCcceeeeeeecccCc-eeeeccCCCcEEEEeccCC------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence            6889999999999997 7999999999999997652      2456677788999999999999653 233799999999


Q ss_pred             cEEEEeCCCCC---CCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCC---Ceee------
Q 014433          202 QICLWDINAAP---KNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSK---PVQS------  268 (424)
Q Consensus       202 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~---~~~~------  268 (424)
                      ++.||.-....   ..........+....+.|++++|.|.. ...+|+++.||.++||+.-......   ....      
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            99999753221   112333445566677899999999964 3457899999999999876543211   1111      


Q ss_pred             -eeccCCCeeEEEecCCC--CeEEEEEeCC-----CcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCCC---cEEE
Q 014433          269 -VVAHQSEVNCLAFNPFN--EWILATGSTD-----KTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNE---TILA  334 (424)
Q Consensus       269 -~~~~~~~v~~v~~~~~~--~~~l~tg~~d-----g~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~~---~~l~  334 (424)
                       ...+..+..|+.|+|..  +.+||.|+.+     +.++||.....+   ..+.++.+|..+|+.++|.|+-.   .+||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence             12466788999999742  3378888866     478999876543   34566779999999999999642   4799


Q ss_pred             EEECCCeEEEeeCCCCCcc------cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          335 SCCLGRRLMVWDLSRIDEE------QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +++.|| |+||.+......      .......+.+.+.+..+.+|++.|+.+.|+-.|. +|+|+|.||+|++|+..-.
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhhh
Confidence            999999 999999853321      1112222344567788899999999999999999 8999999999999987643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.7e-26  Score=191.47  Aligned_cols=244  Identities=16%  Similarity=0.260  Sum_probs=194.0

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC--CC
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--DA  201 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg  201 (424)
                      ..+.|+++.|+++|. ++++++.|..++|||...          .+...++..+.-.+..++|..... .++.++.  |.
T Consensus        13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~----------g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~   80 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLS----------GKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDD   80 (311)
T ss_pred             CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCC----------CceeeEeecccccccEEEEecCCc-eEEEccCCCCC
Confidence            367899999999997 677788899999999987          566777777777888888876655 4555555  88


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      +|+..++.+.      +.++.+.+|...|++|+.+|-+. .|++++.|++|++||+|..++   ...+  +...-..++|
T Consensus        81 tIryLsl~dN------kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~c---qg~l--~~~~~pi~Af  148 (311)
T KOG1446|consen   81 TIRYLSLHDN------KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKC---QGLL--NLSGRPIAAF  148 (311)
T ss_pred             ceEEEEeecC------ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCC---ceEE--ecCCCcceeE
Confidence            9999999877      45788999999999999999986 566999999999999998665   2222  2334456799


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCC---CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSH---KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h---~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      +|.|- ++|++.....|++||+|+. +.|..++...   ....+.+.|||+|+. ++.+...+.+++.|.-.+.      
T Consensus       149 Dp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~------  220 (311)
T KOG1446|consen  149 DPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT------  220 (311)
T ss_pred             CCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc------
Confidence            99997 7888887779999999986 4566666543   668899999999985 5566778889999988763      


Q ss_pred             CcCCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          358 DAEDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                              ++..+.++...   -.+..|+|+++ ++++|+.||+|.+|+++++.
T Consensus       221 --------~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  221 --------VKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             --------EeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc
Confidence                    34444444332   25789999999 68899999999999998774

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.3e-28  Score=199.79  Aligned_cols=264  Identities=18%  Similarity=0.304  Sum_probs=220.8

Q ss_pred             CCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433          113 NGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       113 ~~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      .-++.+.+.+ +|.+.|..++.....+ ++.+++.|.+.+||.+.+          ..++.++.||.+.|+++.|++.+.
T Consensus       135 t~~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es----------g~CL~~Y~GH~GSVNsikfh~s~~  203 (481)
T KOG0300|consen  135 TVKFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES----------GACLATYTGHTGSVNSIKFHNSGL  203 (481)
T ss_pred             ceeEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc----------ccceeeecccccceeeEEeccccc
Confidence            3456665554 7999999999887665 999999999999999998          677889999999999999999887


Q ss_pred             ceEEEEeCCCcEEEEeC------CCCCC-------------------------C---CcccceeeeecCCccEeeEEEec
Q 014433          192 GHLLSGSDDAQICLWDI------NAAPK-------------------------N---KSLEAMQIFKVHEGVVEDVAWHL  237 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~------~~~~~-------------------------~---~~~~~~~~~~~~~~~v~~~~~~~  237 (424)
                       ++++++.|++..||..      -....                         .   ..-.++..+.+|.+.|.+..|..
T Consensus       204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~  282 (481)
T KOG0300|consen  204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA  282 (481)
T ss_pred             -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence             8999999999999972      11100                         0   01134666888999999999998


Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC
Q 014433          238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK  317 (424)
Q Consensus       238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~  317 (424)
                      .+..+ ++++-|.+..+||+.++..   +..+.+|....+.++-+|..+ ++++.+.|.+.++||+|..-..+..|++|.
T Consensus       283 gg~Q~-vTaSWDRTAnlwDVEtge~---v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt  357 (481)
T KOG0300|consen  283 GGQQM-VTASWDRTANLWDVETGEV---VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT  357 (481)
T ss_pred             Cccee-eeeeccccceeeeeccCce---eccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence            88766 5999999999999999875   777889999999999999776 899999999999999997667788999999


Q ss_pred             CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014433          318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN  397 (424)
Q Consensus       318 ~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  397 (424)
                      ..|+++.|..+.+  +++|+.|.+|+|||++++..             .+.+++. .++++.++.+..++ +|+.--++.
T Consensus       358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRs-------------plATIRt-dS~~NRvavs~g~~-iIAiPhDNR  420 (481)
T KOG0300|consen  358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRS-------------PLATIRT-DSPANRVAVSKGHP-IIAIPHDNR  420 (481)
T ss_pred             cceeEEEEecCCc--eeecCCCceEEEeeeccccC-------------cceeeec-CCccceeEeecCCc-eEEeccCCc
Confidence            9999999999874  88999999999999998752             3334332 45789999998888 788777888


Q ss_pred             cEEEEecCCccCC
Q 014433          398 ILQIWQMAENIYH  410 (424)
Q Consensus       398 ~i~vw~~~~~~~~  410 (424)
                      .|++||++.+.+.
T Consensus       421 qvRlfDlnG~Rla  433 (481)
T KOG0300|consen  421 QVRLFDLNGNRLA  433 (481)
T ss_pred             eEEEEecCCCccc
Confidence            9999999988764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.4e-27  Score=196.75  Aligned_cols=270  Identities=20%  Similarity=0.299  Sum_probs=204.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCc-----EEEecCCCceeEEEecCCCCceEEEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD-----LRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      .|.+.|+++...+...+++++|+.||.|.|||++.........-..+..     ..-.+|.-.|.++.|-|...++|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            6899999999999877799999999999999998743222111111111     12235888999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC--CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +.|.++++||.++.+....+      + ..+.|.+-+|+|-.  ..++|+|..+-.|++.|+.++..   .+.+.+|...
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F------~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr~~  190 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDF------K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHRDG  190 (397)
T ss_pred             cccceEEEeecccceeeEEe------e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeeccccCc
Confidence            99999999999876543222      2 46677777787743  35788999999999999999885   7788899999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--------------ecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--------------FDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------------~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                      |.++.|+|..+++||+|+.||.|++||+|....+...              -.+|.+.|++++|+.++. .+++++.|..
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r  269 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDR  269 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccc
Confidence            9999999999999999999999999999975333322              345778899999999996 6889999999


Q ss_pred             EEEeeCCCCCcccCCCCcC---------------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014433          342 LMVWDLSRIDEEQTPEDAE---------------------------------DGPPELLFIHGGHTSKISDFSWNPCEDW  388 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~  388 (424)
                      +++|+..++..........                                 ......+..+.+|-..|.+..+.|+-. 
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq-  348 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE-  348 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-
Confidence            9999998875432111100                                 011233444456666677777777766 


Q ss_pred             EEEEEeCCCcEEEEec
Q 014433          389 VISSVAEDNILQIWQM  404 (424)
Q Consensus       389 ~l~s~~~dg~i~vw~~  404 (424)
                      -+.++..|+.+..|-+
T Consensus       349 ~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  349 QCFTGDMNGNIYMWSP  364 (397)
T ss_pred             hhhccccCCccccccc
Confidence            4677788888888877

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=9.4e-29  Score=216.43  Aligned_cols=228  Identities=20%  Similarity=0.357  Sum_probs=186.5

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      +.+..+.+|+..|.++.|.|....+|++++.|+.|+||++....     .+++.+.+|..+|.+++|++++..++ +++.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sf  278 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNNCGTSFL-SASF  278 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccccCCeee-eeec
Confidence            44678899999999999999666699999999999999998632     46888999999999999999998665 9999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      |+.|++||+.++.+   +..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+ ++.++.+..|-+.|..+.|-++
T Consensus       279 D~~lKlwDtETG~~---~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  279 DRFLKLWDTETGQV---LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             ceeeeeeccccceE---EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccC
Confidence            99999999999886   44443 3567899999999988999999999999999999 7899999999999999999999


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC--------------------CCCee------------eEEEcCCC--
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAED--------------------GPPEL------------LFIHGGHT--  374 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------~~~~~------------~~~~~~h~--  374 (424)
                      +. .+++++.|++++||+.+.....+.....+.                    .....            ...+.||.  
T Consensus       354 g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  354 GR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             Cc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence            97 688999999999999987643322111110                    00011            11234564  


Q ss_pred             CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +.-..+.|+|||. +|++|+.||.+.+||.++-.+
T Consensus       433 Gys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  433 GYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             CceeeEEEcCCCC-eEEeecCCccEEEeechhhhh
Confidence            3456789999999 699999999999999987643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.1e-28  Score=219.49  Aligned_cols=257  Identities=19%  Similarity=0.261  Sum_probs=213.1

Q ss_pred             cCCcee---EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          124 HDGEVN---RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       124 h~~~v~---~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      |...|+   .+..++.+.++|.||+.||.|++|++.....++.    ......++.|...|..+...-+++ .|+++|.|
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s----~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsD   94 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS----TPYIASMEHHSDWVNDIILCGNGK-TLISASSD   94 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc----cchhhhhhhhHhHHhhHHhhcCCC-ceEEecCC
Confidence            444444   5566666666899999999999999988554432    113567888999999999998887 59999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-------CCCeeeee-cc
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVV-AH  272 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~-~~  272 (424)
                      -+|++|+......    -++..+..|.+.|.|+++-.....++|+||-|+.|.+||+.++..       ......+. ++
T Consensus        95 tTVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~  170 (735)
T KOG0308|consen   95 TTVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP  170 (735)
T ss_pred             ceEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence            9999999986631    245667789999999999555567899999999999999997621       11222333 78


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ..+|++++.++.+. +|++|+..+.+++||.|+ .+.+..+.+|...|..+..+++|. -+++++.||+|++||+...  
T Consensus       171 k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQ--  245 (735)
T KOG0308|consen  171 KDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQ--  245 (735)
T ss_pred             ccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecccc--
Confidence            88999999999885 899999999999999999 677888889999999999999996 5889999999999999874  


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                  ++++++..|...|+++.-+|+-. .+++|+.||.|..=++.+.
T Consensus       246 ------------rCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 ------------RCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------------ceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCc
Confidence                        67888899999999999999988 6999999999999888773

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.1e-27  Score=194.75  Aligned_cols=243  Identities=20%  Similarity=0.347  Sum_probs=192.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceEEEEeCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSDD  200 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~d  200 (424)
                      -.|.+.|++++.+  ++ ++|+|+.|-+|+|||+.+          ......+..|.+.|+++.|.+.-. ..|++|+.|
T Consensus        40 ~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GP-YVASGSSDETIHIYDMRK----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             cccccceeEEEec--ce-eEeccCCCCcEEEEeccc----------hhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence            3589999999996  44 899999999999999988          455667888999999999987642 259999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |.|.+|++..      +..+..+++|.+.|+.++.+|.++ +..+.+.|+.+++||+-.++.. .+..   -....+.|.
T Consensus       107 G~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a-~v~~---L~~~at~v~  175 (362)
T KOG0294|consen  107 GHIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVA-FVLN---LKNKATLVS  175 (362)
T ss_pred             CcEEEEEcCC------eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccc-eeec---cCCcceeeE
Confidence            9999999954      356788889999999999999997 5558899999999999887742 1222   233445599


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+|.|.+ |+.++.+ .|-+|-+.+ ......+.. ...+.++.|-..+  .|++|+.|+.|.+||....          
T Consensus       176 w~~~Gd~-F~v~~~~-~i~i~q~d~-A~v~~~i~~-~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~----------  239 (362)
T KOG0294|consen  176 WSPQGDH-FVVSGRN-KIDIYQLDN-ASVFREIEN-PKRILCATFLDGS--ELLVGGDNEWISLKDTDSD----------  239 (362)
T ss_pred             EcCCCCE-EEEEecc-EEEEEeccc-HhHhhhhhc-cccceeeeecCCc--eEEEecCCceEEEeccCCC----------
Confidence            9999995 6666554 588998876 333333332 3567778777654  6889999999999999863          


Q ss_pred             CCCCeeeEEEcCCCCCcceEEe--CCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          361 DGPPELLFIHGGHTSKISDFSW--NPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                          .++..+.+|..+|-++.+  .|++. +|+|+|.||.|+|||+....-
T Consensus       240 ----~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  240 ----TPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             ----ccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccccc
Confidence                557778899999999984  34555 799999999999999988733

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.2e-28  Score=223.45  Aligned_cols=258  Identities=15%  Similarity=0.330  Sum_probs=202.9

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---CCceeEEEecCCCCceEEEEeCCC
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ....++|..+++...++++ + ...+.||.+.......      .........   ...+..+.|.....++||+++..|
T Consensus        39 k~~~nAIs~nr~~~qiv~A-G-rs~lklyai~~~~~~~------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG  110 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVA-G-RSLLKLYAINPNDFSE------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG  110 (839)
T ss_pred             ccccceEeecCCcceeEEe-c-ccceeeEeeCcccCCc------ceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence            4567778888876644444 4 3467888877632221      111111111   124567889877778999999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|.+||+......   +.+..+..|...++++.|++..++++++|+.||+|++||+|..+.   ..++.+....|+.|+|
T Consensus       111 ~i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV~f  184 (839)
T KOG0269|consen  111 VISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDVKF  184 (839)
T ss_pred             cEEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhceee
Confidence            9999999864221   234567889999999999999999999999999999999998664   5566677889999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|.-.+.|+++...|.+++||+|.+.++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.....         
T Consensus       185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~---------  254 (839)
T KOG0269|consen  185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA---------  254 (839)
T ss_pred             ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc---------
Confidence            998888999999999999999999999999999999999999999977 4899999999999999986432         


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecCCccCC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAENIYH  410 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~~  410 (424)
                         ..+.+.. ...+|..++|-|..++.|++++  .|-.|+|||+...++.
T Consensus       255 ---~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  255 ---KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             ---cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence               1122221 2457999999999999999887  5889999999887653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-26  Score=185.69  Aligned_cols=242  Identities=20%  Similarity=0.254  Sum_probs=197.1

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..--+|...|..++.+.++. -+|+|+.|..|.+||+.+          .+....+.+|.+.|+.+.|+.... .+++|+
T Consensus        53 ktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~T----------Gkv~Rr~rgH~aqVNtV~fNeesS-Vv~Sgs  120 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNT----------GKVDRRFRGHLAQVNTVRFNEESS-VVASGS  120 (307)
T ss_pred             eeecCCCceeeecccccccc-ccccCCCCceEEEEEccc----------CeeeeecccccceeeEEEecCcce-EEEecc
Confidence            33447899999999999887 689999999999999998          677889999999999999998766 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|.++++||.++..    .++++.+......|.++....   +.+++|+.||+++.||+|.+..   ..  .-...+|+|
T Consensus       121 fD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l---~s--Dy~g~pit~  188 (307)
T KOG0316|consen  121 FDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL---SS--DYFGHPITS  188 (307)
T ss_pred             ccceeEEEEcccCC----CCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee---eh--hhcCCccee
Confidence            99999999998754    367777887888999998863   4677999999999999999774   11  223679999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE--EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ--VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~--~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      ++|++++. ..++++.|+++++.|-.+ ++.+..+++|.+.-..  ++++... ..+++|+.||.|.+||+...      
T Consensus       189 vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~------  259 (307)
T KOG0316|consen  189 VSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDE------  259 (307)
T ss_pred             EEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccc------
Confidence            99999998 577889999999999888 8999999999876544  4455554 47999999999999999874      


Q ss_pred             CCcCCCCCeeeEEEcCCCCC-cceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          357 EDAEDGPPELLFIHGGHTSK-ISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                              ..+..+..+... |.+++++|....++ ++. ++.+.+|-
T Consensus       260 --------~~~sk~~~~~~v~v~dl~~hp~~~~f~-~A~-~~~~~~~~  297 (307)
T KOG0316|consen  260 --------TQISKLSVVSTVIVTDLSCHPTMDDFI-TAT-GHGDLFWY  297 (307)
T ss_pred             --------eeeeeeccCCceeEEeeecccCcccee-Eec-CCceecee
Confidence                    344455555555 78999999887544 433 45566664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=197.12  Aligned_cols=264  Identities=20%  Similarity=0.336  Sum_probs=215.5

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCC------CC------CCCC------------------CCCCCC
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS------KH------PSKP------------------PLDGAC  168 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~------~~------~~~~------------------~~~~~~  168 (424)
                      .+-.+|.+.|++|+|++.+. ++++++.|++..||...      ..      ..+.                  ......
T Consensus       184 ~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  184 ATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            34568999999999999885 89999999999999832      10      0000                  011223


Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .|+..+.+|.+.|.+..|...+. .+++++.|.+..+||++++      ..+..+.+|....+.++-+|..+ ++++.+.
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstHptQr-LVvTsSr  334 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTHPTQR-LVVTSSR  334 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC------ceeccccCcchhccccccCCcce-EEEEecc
Confidence            46778999999999999999777 5999999999999999988      45677889999999999999875 7779999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      |.+.++||+|..  ...+..+++|...|+++.|..+.+  +++|+.|.+|++||++++..++.++.. .++++.++.+..
T Consensus       335 DtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g  409 (481)
T KOG0300|consen  335 DTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG  409 (481)
T ss_pred             CceeEeccchhh--cceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecC
Confidence            999999999942  456788899999999999998665  889999999999999999999999986 689999999988


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCCcEEEEecCCc
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++ ++|.-..+..|++||++.....+-          .-..-++|...|++++|..+.+ .-|+++|.|..+.=|++...
T Consensus       410 ~~-iIAiPhDNRqvRlfDlnG~RlaRl----------PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  410 HP-IIAIPHDNRQVRLFDLNGNRLARL----------PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             Cc-eEEeccCCceEEEEecCCCccccC----------CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            75 788888889999999986543221          1123468999999999976543 12678899999999998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.3e-28  Score=233.59  Aligned_cols=266  Identities=20%  Similarity=0.349  Sum_probs=219.3

Q ss_pred             EEEEeccCCceeEEEecCCCCc---EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          118 IIQQINHDGEVNRARYMPQNPF---LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~---~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      .+-.+.-...-+.++|.+.+..   +||.|..||.|-+||......    ......+.+...|.+.|.+|.|++...++|
T Consensus        57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~~~~~~la~~~~h~G~V~gLDfN~~q~nlL  132 (1049)
T KOG0307|consen   57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----NASEEVLATKSKHTGPVLGLDFNPFQGNLL  132 (1049)
T ss_pred             ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc----CcchHHHhhhcccCCceeeeeccccCCcee
Confidence            3334445556778999987765   699999999999999876211    122344567788999999999999988899


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-  273 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  273 (424)
                      |+|+.||.|.|||++.........    .....+.|.+++|+..-.++||+++.+|.+.|||+|..+.   +..+..+. 
T Consensus       133 ASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---ii~ls~~~~  205 (1049)
T KOG0307|consen  133 ASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---IIKLSDTPG  205 (1049)
T ss_pred             eccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc---ccccccCCC
Confidence            999999999999998754322221    2234678999999999999999999999999999998653   44444433 


Q ss_pred             -CCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          274 -SEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       274 -~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                       ..+..++|||++...+++++.|.   .|.+||+|....+++++.+|...|.++.|++.+..+|++++.|+.|.+|+.++
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence             35778999999988888887654   79999999988999999999999999999999988999999999999999998


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +              +.+..+....+.+..+.|+|..+.++++++-||.|.|+.+....
T Consensus       286 g--------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  286 G--------------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             c--------------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            5              66777777778899999999999889999999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.7e-27  Score=221.01  Aligned_cols=241  Identities=23%  Similarity=0.393  Sum_probs=206.5

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      |...+.+..|+.   ..+++++.+++|++|+...          ...+.. +.+|.+.|.++++.. +..+|++|+.|.+
T Consensus       207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~----------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t  272 (537)
T KOG0274|consen  207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNN----------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKT  272 (537)
T ss_pred             Ccchhhhheeec---CeEEecCCCceeEEeeccc----------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCc
Confidence            567888888883   3699999999999999987          444555 899999999999987 5558999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +++||..++      .+...+.+|...|.++...+   .++++|+.|.+|++|++.++..   +..+.+|..+|+++..+
T Consensus       273 ~rvWd~~sg------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~---l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  273 ERVWDCSTG------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC---LNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             EEeEecCCC------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce---EEEeccccccEEEEEec
Confidence            999999888      45777889999999998764   4567899999999999998764   77777899999999998


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                        +. ++++|+.|++|++||++. .++++++.+|..+|.++.+.+.  ..+++|+.|+.|++||+++..           
T Consensus       341 --~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-----------  403 (537)
T KOG0274|consen  341 --EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-----------  403 (537)
T ss_pred             --CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence              44 799999999999999997 8999999999999999998875  368999999999999999841           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                        +++.++.+|...+..+.+.  +. +|++++.|+.|++||..++.....
T Consensus       404 --~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  404 --KCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRT  448 (537)
T ss_pred             --hhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecccCceeee
Confidence              4677888999988777665  44 799999999999999998866543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.7e-27  Score=198.79  Aligned_cols=245  Identities=16%  Similarity=0.267  Sum_probs=207.5

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      +.|..+|.|+.|+.+.. .+|+|+.||.|+||.+.+          ..++..+. +|...|+++.|+.++. .+++++.|
T Consensus       260 MMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~t----------G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD  327 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIET----------GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFD  327 (508)
T ss_pred             eecccceEEEeecccHH-HhhccCcCCcEEEEEEec----------chHHHHhhhhhccCeeEEEEccCcc-hhhccccc
Confidence            45789999999999886 899999999999999998          45556665 7999999999999988 59999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      .++++.-+.+++      +++.+.+|++.|+...|.++|.+++ +++.||+|++|+.++..+...... .+...+|+++-
T Consensus       328 ~tvRiHGlKSGK------~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~  399 (508)
T KOG0275|consen  328 QTVRIHGLKSGK------CLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVI  399 (508)
T ss_pred             ceEEEeccccch------hHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccC-CCCcccceeEE
Confidence            999999998874      5677889999999999999998765 999999999999999876332222 23566899999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      .-|.++..++++....+|+|-++.  ++.++.+..   ..+...+++.+|.|+ ++++.+.|+.++.|.+.++       
T Consensus       400 ~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG-------  469 (508)
T KOG0275|consen  400 LLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSG-------  469 (508)
T ss_pred             EcCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecC-------
Confidence            888887788899999999999887  577777763   235677888999997 6889999999999999886       


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                             .+-.++.-|...|.+++-+|..+ +|++-++||.+++|..
T Consensus       470 -------~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  470 -------KLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWKP  508 (508)
T ss_pred             -------ceeeeeecccccccccccCcccc-hhhhhcccchhhhcCC
Confidence                   44556677888899999999988 8999999999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.6e-26  Score=198.58  Aligned_cols=245  Identities=21%  Similarity=0.319  Sum_probs=200.1

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -+|...|+.+.|+|+.. .+++++.|-.|+||....          .........|..+|+.+..+|.|. ||++++.||
T Consensus       258 ~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~----------~s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~  325 (506)
T KOG0289|consen  258 KGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPL----------SSEPTSSRPHEEPVTGLSLHPTGE-YLLSASNDG  325 (506)
T ss_pred             cCcceEEEEEEeccchh-heeecCCcceEEeecccc----------ccCccccccccccceeeeeccCCc-EEEEecCCc
Confidence            47999999999999875 789999999999999987          233456778999999999999998 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +..+.|++++..      +....  ...-.+++.+||||| .+|++|..||.|+|||+..+..   +..+.+|.++|.+|
T Consensus       326 ~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  326 TWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAI  395 (506)
T ss_pred             eEEEEEccCCcE------EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEE
Confidence            999999988743      22111  123458999999998 4889999999999999998764   77888999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +|+.+| |+||++..|+.|++||+|+. +...++... ...|.++.|.+.|. +|+.++.|=.|++++-.+.        
T Consensus       396 ~FsENG-Y~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k--------  464 (506)
T KOG0289|consen  396 SFSENG-YWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTK--------  464 (506)
T ss_pred             EeccCc-eEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEecccc--------
Confidence            999877 57999999999999999984 455555532 34799999999996 6888877766666654332        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                          ....+..+..|.+..+.+.|..... +++++|.|..++++.+
T Consensus       465 ----~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  465 ----SWTEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYAL  505 (506)
T ss_pred             ----cceeeehhhhcccccceeeecccce-EEeeccchhheEEeec
Confidence                1255666677888889999999888 6999999999998865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.6e-26  Score=189.97  Aligned_cols=247  Identities=16%  Similarity=0.307  Sum_probs=191.0

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      -.+.|.+|+|+|+...++++|+-||+||+|+++..       +...+ .....|.++|.+++|+.+|. .+++|+.|+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-------g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~   96 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-------GQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQA   96 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecC-------Ccccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCce
Confidence            45688999999977778989999999999999872       12222 34567999999999999997 69999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-cEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      ++||+.+++       ...+..|.++|..+.|-+... .+|++|+-|.+|+.||+|...   ++.++. -...++++..-
T Consensus        97 k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~  165 (347)
T KOG0647|consen   97 KLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVL  165 (347)
T ss_pred             EEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhcc
Confidence            999999873       345667999999999987543 367899999999999999855   455543 35677777654


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                        .+ +++++..++.|.+|+++++....+... ..+-.+.+++..++.+. .|.|+-.|.+.|..+.....         
T Consensus       166 --~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~---------  232 (347)
T KOG0647|consen  166 --YP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP---------  232 (347)
T ss_pred             --Cc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCc---------
Confidence              33 788889999999999987433322222 22446899999998874 68999999999999987532         


Q ss_pred             CCCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          362 GPPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                         ..-+.++.|.         ..|++++|+|... .|+|+|.||++.+||-...
T Consensus       233 ---~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  233 ---KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             ---cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhh
Confidence               2223333333         2578899999877 7999999999999997654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=7.1e-27  Score=198.70  Aligned_cols=215  Identities=25%  Similarity=0.449  Sum_probs=177.3

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCceeEEEecCCCCceEEE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ++..-+|.+.=++|+|||-....+++|.--+.|++|...+        +.+.. ...+.+|+..|-.|+|+|...++|++
T Consensus       204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~--------g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS  275 (440)
T KOG0302|consen  204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST--------GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS  275 (440)
T ss_pred             eEEecccCccceeeecccccccccccCccccceEeeeecc--------CceeecCccccccccchhhhccCCccCceEEe
Confidence            4555679999999999996555689998889999999887        22322 23466799999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      ||.||+|+|||++.+.....+    ..+.|.+.|+.|.|+...+ +||+|+.||+++|||+|+-+..+++..++-|..+|
T Consensus       276 cS~DgsIrIWDiRs~~~~~~~----~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI  350 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKAAV----STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI  350 (440)
T ss_pred             eecCceEEEEEecCCCcccee----EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence            999999999999988553222    2378999999999999887 88999999999999999988778999999999999


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---------------cceEecCC--CCCEEEEEEcCCCCcEEEEEECC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKIST---------------ALHTFDSH--KEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---------------~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      ++|.|+|.....|++++.|..|.+||+.-...               |.+.+..|  +..+..+.|+++-+.++++.+.|
T Consensus       351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence            99999999888999999999999999864211               12222234  45788999999988899999999


Q ss_pred             CeEEEee
Q 014433          340 RRLMVWD  346 (424)
Q Consensus       340 g~i~iwd  346 (424)
                      | +.||.
T Consensus       431 G-fnVfk  436 (440)
T KOG0302|consen  431 G-FNVFK  436 (440)
T ss_pred             c-eeEEE
Confidence            9 66664

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.8e-26  Score=198.35  Aligned_cols=245  Identities=20%  Similarity=0.324  Sum_probs=198.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..+.++...|. ...++||+.|..+.++|...          .+....+.||...|+.+.++|+.. .+++++.|..|+|
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s----------~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~v  287 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPS----------NQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRV  287 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecch----------hhhhhhccCcceEEEEEEeccchh-heeecCCcceEEe
Confidence            46778888886 34799999999999999987          466778999999999999999877 6999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--cCCCeeEEEecC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFNP  283 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~v~~~~  283 (424)
                      |.......      ......|..+|+.+..+|.+.+++ +++.||+..+.|++++..   +.....  ..-.+++.+|||
T Consensus       288 ws~~~~s~------~~~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  288 WSVPLSSE------PTSSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             eccccccC------ccccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcC
Confidence            99876543      334567999999999999999775 899999999999999875   333222  334689999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      +|- +|++|..||.|+|||+.+ ...+..|.+|.++|..++|+.+| ++||+++.|+.|++||+|.....+.        
T Consensus       358 DgL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt--------  426 (506)
T KOG0289|consen  358 DGL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKT--------  426 (506)
T ss_pred             Cce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccce--------
Confidence            997 899999999999999998 56889999999999999999999 6899999999999999998643221        


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                          +.+.. ...|.++.|.+.|.+ |+.+|.|=.|++++-.+..+
T Consensus       427 ----~~l~~-~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  427 ----IQLDE-KKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             ----eeccc-cccceeEEEcCCCCe-EEeecceeEEEEEecccccc
Confidence                11121 236999999999995 66666665555555444433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.5e-26  Score=201.53  Aligned_cols=270  Identities=19%  Similarity=0.277  Sum_probs=210.1

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC---CC----CCCCCCcEEE-ecCCCceeEEEecCC
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---PL----DGACSPDLRL-RGHSTEGYGLSWSKF  189 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~---~~----~~~~~~~~~~-~~h~~~v~~l~~~~~  189 (424)
                      +.....|.-+|.+++++|++. +..+++.+|+|.=|++.+.....   +.    .....+...- .+|...+.+++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            344557999999999999987 78899999999999987643220   00    0011122112 489999999999999


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      +. +|++|+.|..|.||+.++..      .++.+.+|.+.|.+++|-.....++ +++.|+.|++|++.....   +.++
T Consensus       214 gk-ylatgg~d~~v~Iw~~~t~e------hv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~---vetl  282 (479)
T KOG0299|consen  214 GK-YLATGGRDRHVQIWDCDTLE------HVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSY---VETL  282 (479)
T ss_pred             Cc-EEEecCCCceEEEecCcccc------hhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHH---HHHH
Confidence            98 89999999999999998773      4566789999999999987666565 899999999999998654   7778


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .+|.+.|..|......+ ++.+|+.|+++++|++..  .....+.+|.+.+-|++|-.+.  .|++|+.+|.|.+|++..
T Consensus       283 yGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             hCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence            89999999998877665 677788999999999954  5556778889999999998776  488999999999999987


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .+.......+..-.+.+  ..-.+..+|++++..|... ++++|+.+|+|++|.+.++
T Consensus       358 Kkplf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCceeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence            65433222111110110  0012234899999999888 8999999999999999998

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.9e-25  Score=205.33  Aligned_cols=304  Identities=13%  Similarity=0.213  Sum_probs=229.0

Q ss_pred             HHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCC
Q 014433           32 YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGC  111 (424)
Q Consensus        32 y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (424)
                      |..+-+..+..-.-+++|.|.....       ..+++ .     .+|.+....+.......                  .
T Consensus       311 i~r~~~ir~~~kiks~dv~~~~~~~-------~~lv~-l-----~nNtv~~ysl~~s~~~~------------------p  359 (888)
T KOG0306|consen  311 IKRLETIRTSAKIKSFDVTPSGGTE-------NTLVL-L-----ANNTVEWYSLENSGKTS------------------P  359 (888)
T ss_pred             HHHHHheechhheeEEEEEecCCcc-------eeEEE-e-----ecCceEEEEeccCCCCC------------------c
Confidence            3444555555556689999987433       22332 2     23445555553210100                  0


Q ss_pred             CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      ...+..-+...+|+..|.+++++.++. ++++|+ .+.++||+..+          .+.+.++...  -+.+..|.|.+.
T Consensus       360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga-~~SikiWn~~t----------~kciRTi~~~--y~l~~~Fvpgd~  425 (888)
T KOG0306|consen  360 EADRTSNIEIGGHRSDVRSLCVSSDSI-LLASGA-GESIKIWNRDT----------LKCIRTITCG--YILASKFVPGDR  425 (888)
T ss_pred             cccccceeeeccchhheeEEEeecCce-eeeecC-CCcEEEEEccC----------cceeEEeccc--cEEEEEecCCCc
Confidence            112344456779999999999998764 666654 67999999987          5666666543  788899999665


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC----CCCee
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV----SKPVQ  267 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~----~~~~~  267 (424)
                       ++++|...|.+.+||+.+..      .+...+.|.+.|++++.+|++..+ ++|+.|.+|++||..-...    .+.+.
T Consensus       426 -~Iv~G~k~Gel~vfdlaS~~------l~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~l  497 (888)
T KOG0306|consen  426 -YIVLGTKNGELQVFDLASAS------LVETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVL  497 (888)
T ss_pred             -eEEEeccCCceEEEEeehhh------hhhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceee
Confidence             89999999999999997663      344556799999999999999865 5999999999999753111    11111


Q ss_pred             -----eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          268 -----SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       268 -----~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                           ..-.-...|.|++++|++. +||++--|.+|+||-+.+ -+-...+-+|.-||.|+..||++. +++|||.|.+|
T Consensus       498 sl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnV  574 (888)
T KOG0306|consen  498 SLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNV  574 (888)
T ss_pred             eeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCce
Confidence                 1112457899999999998 699999999999999998 466677889999999999999996 89999999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +||-+..+.+              ...+-+|...|.++.|.|... ++.++|.|+.|+-||-..
T Consensus       575 KiWGLdFGDC--------------HKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  575 KIWGLDFGDC--------------HKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             EEeccccchh--------------hhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh
Confidence            9999998744              555678999999999999776 899999999999997654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.2e-25  Score=180.89  Aligned_cols=242  Identities=20%  Similarity=0.327  Sum_probs=196.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|-.++|.|..+.++|+++.|.+|++||+..          .++........+. .-+.|+|+|. +++.++.|.
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~----------~k~~~~i~~~~en-i~i~wsp~g~-~~~~~~kdD  128 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS----------GKCTARIETKGEN-INITWSPDGE-YIAVGNKDD  128 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc----------CcEEEEeeccCcc-eEEEEcCCCC-EEEEecCcc
Confidence            478889999999999888999999999999999987          5666666544444 4688999998 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|...|.++.+.....       ...-.++.++|+.++. +|......|+|.|.....   .+++..+++|.....||.|
T Consensus       129 ~it~id~r~~~~~~~~-------~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps---Lkpv~si~AH~snCicI~f  197 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEE-------QFKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS---LKPVQSIKAHPSNCICIEF  197 (313)
T ss_pred             cEEEEEecccceeehh-------cccceeeeeeecCCCC-EEEEecCCceEEEEeccc---cccccccccCCcceEEEEE
Confidence            9999999876432221       2455788999997665 444555679999988775   6689999999999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|+|+ .||+|+.|..+.+||+.. --+++.+.-+.-+|..+.||.+|+ +||+++.|-.|-|=++.++..         
T Consensus       198 ~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~---------  265 (313)
T KOG1407|consen  198 DPDGR-YFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDR---------  265 (313)
T ss_pred             CCCCc-eEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCe---------
Confidence            99999 599999999999999997 577888888999999999999996 899999999999999988742         


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC---------CcEEEEecC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED---------NILQIWQMA  405 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------g~i~vw~~~  405 (424)
                           +... .+.++...++|+|... |||-++.|         |.+++|-+.
T Consensus       266 -----~~eI-~~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  266 -----VWEI-PCEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             -----EEEe-eccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence                 2222 3567889999999988 67666543         566666554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.5e-26  Score=200.14  Aligned_cols=248  Identities=17%  Similarity=0.273  Sum_probs=203.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|...+.+++.+++++ +||+|+.|..|.||+..+          ..++..+.+|.+.|.+++|-. +++.|++++.|++
T Consensus       200 ~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drs  267 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRS  267 (479)
T ss_pred             cccceeEEEEEcCCCc-EEEecCCCceEEEecCcc----------cchhhcccccccceeeeeeec-CccceeeeecCCc
Confidence            8999999999999997 899999999999999998          677888999999999999987 4557999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++|+++..      ..+.++.+|.+.|.+|.-..-++ ++.+|+.|+++++|++....    ...+.++.+.+-|++|-
T Consensus       268 vkvw~~~~~------s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  268 VKVWSIDQL------SYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             eEEEehhHh------HHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEe
Confidence            999999754      44666788999999998877664 66677799999999994432    33456888899999998


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CC-----------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SH-----------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h-----------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      .+.  .|++|+.+|.|.+|++-+ .+|+.+.. +|           +..|++++..|... ++|+|+.+|+|++|-+..+
T Consensus       337 n~~--HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  337 NDE--HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccc--ceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence            654  489999999999999988 56665543 22           23799999999875 8999999999999999875


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      -.          +..+++.+. -.+.|++++|+++|+.+++..+....+--|-.....
T Consensus       413 ~r----------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~  459 (479)
T KOG0299|consen  413 LR----------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG  459 (479)
T ss_pred             cc----------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence            32          124455554 467899999999999878888877777777665543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=200.90  Aligned_cols=280  Identities=23%  Similarity=0.311  Sum_probs=211.4

Q ss_pred             HhhhcCCCC--CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCC-----CCCCcccCCCCCcCCCC
Q 014433           34 LVITHALEW--PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL-----DDSENDARHYDDDRSDF  106 (424)
Q Consensus        34 ~~~~~~~~~--p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~-----~~~~~~~~~~~~~~~~~  106 (424)
                      ++..|.+-.  +.|+++|+-.+...   +-....+.+||...     .|.||.+.+-.     -..-.-.....      
T Consensus       164 lYvHHD~ilpafPLC~ewld~~~~~---~~~gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~~LGs~~sk~~------  229 (463)
T KOG0270|consen  164 LYVHHDFILPAFPLCIEWLDHGSKS---GGAGNYVAIGTMDP-----EIEIWDLDIVDAVLPCVTLGSKASKKK------  229 (463)
T ss_pred             eeEecceeccCcchhhhhhhcCCCC---CCCcceEEEeccCc-----eeEEeccccccccccceeechhhhhhh------
Confidence            344555444  45899999873322   22236788999643     58888876431     11100000000      


Q ss_pred             CCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe
Q 014433          107 GGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW  186 (424)
Q Consensus       107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  186 (424)
                          ...++ +-...-+|...|..++|+..-+++||+|+.|.+|.+||+.+          .++..++..|...|.+++|
T Consensus       230 ----~k~~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~----------g~p~~s~~~~~k~Vq~l~w  294 (463)
T KOG0270|consen  230 ----KKKGK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT----------GKPKSSITHHGKKVQTLEW  294 (463)
T ss_pred             ----hhhcc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC----------CCcceehhhcCCceeEEEe
Confidence                00111 11223469999999999999889999999999999999998          6778888899999999999


Q ss_pred             cCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~  266 (424)
                      +|..+.+|++|+.|++|.+.|.+.....     -..+ ...+.|..++|.|...+.|.++..||+|+-+|+|...  +++
T Consensus       295 h~~~p~~LLsGs~D~~V~l~D~R~~~~s-----~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~v  366 (463)
T KOG0270|consen  295 HPYEPSVLLSGSYDGTVALKDCRDPSNS-----GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPV  366 (463)
T ss_pred             cCCCceEEEeccccceEEeeeccCcccc-----CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--Cce
Confidence            9999989999999999999999853221     1112 2467899999999999999999999999999999976  578


Q ss_pred             eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       267 ~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      .++++|.++|.++++++..+++++|++.|+.|++|++... .+  +......-+...|.++.|+-..+||.|+..+.++|
T Consensus       367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v  445 (463)
T KOG0270|consen  367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV  445 (463)
T ss_pred             eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence            9999999999999999999999999999999999999752 22  11111112347788889988889999999999999


Q ss_pred             eeCCCCC
Q 014433          345 WDLSRID  351 (424)
Q Consensus       345 wd~~~~~  351 (424)
                      ||+.+..
T Consensus       446 wd~~~~~  452 (463)
T KOG0270|consen  446 WDIFTNS  452 (463)
T ss_pred             eecccCh
Confidence            9998753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.5e-26  Score=209.99  Aligned_cols=337  Identities=16%  Similarity=0.235  Sum_probs=244.9

Q ss_pred             hhHHHHhhhcCCCCCccEEEEccC-CCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCc-------c--cCC
Q 014433           29 PFLYDLVITHALEWPSLTVEWLPD-REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSEN-------D--ARH   98 (424)
Q Consensus        29 ~~~y~~~~~~~~~~p~~~~~~~p~-~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~-------~--~~~   98 (424)
                      ...|.+|+.-..-|   .++-+|. ...++....+...|+.+     ..++.|++|.+..-.+..+.       +  .--
T Consensus       360 gk~~s~lyHS~ciW---~Ve~~p~nv~~~~~aclp~~cF~TC-----SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~  431 (1080)
T KOG1408|consen  360 GKCSSMLYHSACIW---DVENLPCNVHSPTAACLPRGCFTTC-----SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIP  431 (1080)
T ss_pred             cceeeeeeccceee---eeccccccccCcccccCCccceeEe-----cCCCcEEEeecccccccceeecccchhhhhcCc
Confidence            44667777666555   5677774 33333444555555543     37789999988752222111       1  111


Q ss_pred             CCCcC-CCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 014433           99 YDDDR-SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH  177 (424)
Q Consensus        99 ~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h  177 (424)
                      |.+.+ ..+...+...............-.+.+++.+|+++ .||+|..-|+++||++..          ......+.+|
T Consensus       432 y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~----------l~~~~~~eAH  500 (1080)
T KOG1408|consen  432 YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQE----------LEYTCFMEAH  500 (1080)
T ss_pred             cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehh----------hhhhhheecc
Confidence            22222 11112222222333344556677899999999997 799999999999999987          4556678899


Q ss_pred             CCceeEEEecCC--CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEE
Q 014433          178 STEGYGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLI  254 (424)
Q Consensus       178 ~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i  254 (424)
                      ..+|.||.|+..  +..+|++++.|..|.|+|+..     .+.++..+.+|...|+++.|-..+ +.-+++++.|..|.+
T Consensus       501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF  575 (1080)
T KOG1408|consen  501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF  575 (1080)
T ss_pred             cceeEEEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence            999999999853  334799999999999999964     345677888999999999998776 223458889988764


Q ss_pred             EEcCCCCC--CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCC
Q 014433          255 WDLRTPSV--SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKN  329 (424)
Q Consensus       255 ~d~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~  329 (424)
                      --.+....  ..+..........++.|+..|..+ ++++++.|+.|+|||+.+ ++..+.|++   |.+....+...|.|
T Consensus       576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg  653 (1080)
T KOG1408|consen  576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG  653 (1080)
T ss_pred             ehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc
Confidence            33322111  011111112345789999999887 699999999999999998 677777764   66788899999999


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      - ++|+.+.|.++.++|+.++              +++....||...|+++.|.+|-+ -|++.+.||+|.||++...
T Consensus       654 i-Y~atScsdktl~~~Df~sg--------------EcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  654 I-YLATSCSDKTLCFVDFVSG--------------ECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             c-EEEEeecCCceEEEEeccc--------------hhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECchh
Confidence            4 8999999999999999986              67888899999999999999999 4888899999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.9e-27  Score=203.28  Aligned_cols=255  Identities=18%  Similarity=0.264  Sum_probs=203.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|..+.|.++.. .|++|+.|..|++|+...        .......++.+..+.|+++.|.+++. ++++++.|+.
T Consensus       173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~--------~k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~  242 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLG--------EKSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKN  242 (459)
T ss_pred             ccccccceeEEccCcc-hhhhcchhhhhhhhhccc--------chhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCc
Confidence            5899999999999754 799999999999999987        33455677888899999999999888 6888999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +++|++...      +...++.+|++.|+++.|...... +++|+.|.+|++||+....+.+.+.    ..+.+..|..+
T Consensus       243 ~r~Wnvd~~------r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~~~  311 (459)
T KOG0288|consen  243 LRLWNVDSL------RLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIVCS  311 (459)
T ss_pred             eeeeeccch------hhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccc----ccccccceEec
Confidence            999999876      345667889999999999877654 6699999999999999866533332    24456666665


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +   ..+++|..|+.|++||.|. ..+......+. .|+++..++++.. |.+++.|.++.+.|+++..-.+...     
T Consensus       312 ~---~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~s-----  380 (459)
T KOG0288|consen  312 I---SDVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFS-----  380 (459)
T ss_pred             c---eeeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEee-----
Confidence            2   3688999999999999998 67788888754 9999999999975 5677999999999999854322110     


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDL  415 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  415 (424)
                         ......+|  ..+.+.|+|++.| +++||.||.|+||++.++.++..-..
T Consensus       381 ---A~g~k~as--DwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  381 ---AEGFKCAS--DWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             ---cccccccc--ccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEecc
Confidence               01111222  3788999999994 89999999999999999988754433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=197.46  Aligned_cols=237  Identities=20%  Similarity=0.300  Sum_probs=188.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +..+.|+++.|.+++.+ +++++.|+.+++|++..          .....++.+|.+.|+++.|..... .+++|+.|.+
T Consensus       217 Gs~g~it~~d~d~~~~~-~iAas~d~~~r~Wnvd~----------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRt  284 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKH-VIAASNDKNLRLWNVDS----------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRT  284 (459)
T ss_pred             ccCCCcceeeecCCCce-EEeecCCCceeeeeccc----------hhhhhhhcccccceeeehhhcccc-ceeeccccch
Confidence            34578999999999975 55568899999999988          566778999999999999988665 4999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++||+....+.+++-       ....+.+|+.+   ...+++|..|+.|++||+++...   ......+ +.|+++..+
T Consensus       285 iK~WDl~k~~C~kt~l-------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~g-g~vtSl~ls  350 (459)
T KOG0288|consen  285 IKLWDLQKAYCSKTVL-------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK---TRSVPLG-GRVTSLDLS  350 (459)
T ss_pred             hhhhhhhhhheecccc-------ccccccceEec---ceeeeecccccceEEEeccCCce---eeEeecC-cceeeEeec
Confidence            9999998764433321       24567777766   34567999999999999999764   5555554 489999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC----CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSH----KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +++.. +.+.+.|.++.+.|+|+ ......+.+.    ....+.+.|||++. ++++|+.||.|+||++.+++.      
T Consensus       351 ~~g~~-lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKl------  421 (459)
T KOG0288|consen  351 MDGLE-LLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKL------  421 (459)
T ss_pred             cCCeE-EeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceE------
Confidence            98886 55668999999999998 5666665532    23589999999996 799999999999999998743      


Q ss_pred             cCCCCCeeeEEEcCCC--CCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          359 AEDGPPELLFIHGGHT--SKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                              .+.+....  ..|++++|+|.|.+ +++++.++.+.+|.
T Consensus       422 --------E~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  422 --------EKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT  459 (459)
T ss_pred             --------EEEeccCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence                    33333322  25999999999996 66778899999994

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=7.5e-26  Score=206.38  Aligned_cols=243  Identities=19%  Similarity=0.258  Sum_probs=202.7

Q ss_pred             EeccCCceeE-EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          121 QINHDGEVNR-ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       121 ~~~h~~~v~~-~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..+|.+-|.. ++|.+..+..+++|+.|++|.+|....          ..|...+++|...|.+++...++.  +++||.
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~~~~--~iSgSW  120 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGEDGT--LISGSW  120 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCC----------CCchhhhhccccceeeeecCCcCc--eEeccc
Confidence            3457777777 888764445799999999999999987          688899999999999999766554  999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |.++++|....        +...+.+|+..|++++..|.+  .++||+.|.+|++|.-.+     .+.++.+|...|+.+
T Consensus       121 D~TakvW~~~~--------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL  185 (745)
T KOG0301|consen  121 DSTAKVWRIGE--------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGL  185 (745)
T ss_pred             ccceEEecchh--------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-----hhhhhccchhheeee
Confidence            99999998753        344578999999999999987  456999999999997633     467888999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      ++-+++.  |++++.||.|++|++.  +..+..+.+|++-|.++...++++ ++++++.|++++||+..           
T Consensus       186 ~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~-----------  249 (745)
T KOG0301|consen  186 AVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD-----------  249 (745)
T ss_pred             EEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC-----------
Confidence            9999765  7899999999999994  689999999999999999666664 79999999999999976           


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                           ++...+.-....|+++.+-++|.  |++|+.||.|+||........+++
T Consensus       250 -----e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~R~As~e  296 (745)
T KOG0301|consen  250 -----ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKDRKASDE  296 (745)
T ss_pred             -----ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecccccCCHH
Confidence                 33334443345799999999998  788899999999999877655443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=6.4e-25  Score=186.14  Aligned_cols=208  Identities=18%  Similarity=0.320  Sum_probs=175.5

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      +...-+|.+.|+++.|+.++. +||||..+|.|+||...+          ......+..-...+.-+.|+|.+. .|+.|
T Consensus        99 ~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~st----------g~~~~~~~~e~~dieWl~WHp~a~-illAG  166 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVST----------GGEQWKLDQEVEDIEWLKWHPRAH-ILLAG  166 (399)
T ss_pred             eeEecCCCCceEEEEEccCce-EEEecCCCccEEEEEccc----------CceEEEeecccCceEEEEeccccc-EEEee
Confidence            355668999999999999997 999999999999999988          344455555667788899999776 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC--------------
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------  263 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~--------------  263 (424)
                      +.||.+.+|.+...      ...+.+.+|..++++-.|.|+|+++ +++..||+|++|++.++...              
T Consensus       167 ~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  167 STDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             cCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence            99999999999765      2456788999999999999999865 59999999999999875321              


Q ss_pred             ------------------------------------------------------------------------------CC
Q 014433          264 ------------------------------------------------------------------------------KP  265 (424)
Q Consensus       264 ------------------------------------------------------------------------------~~  265 (424)
                                                                                                    ..
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                                                          11


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      ++....|..+|+.+.|-+ .. .|++++.+|.|+.||.|+ ++.+.++.+|...|.+++.+|+.+ +++|+|.|++.+||
T Consensus       320 ~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  320 LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVF  395 (399)
T ss_pred             hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEE
Confidence            222335777889999988 44 588999999999999999 899999999999999999999985 89999999999999


Q ss_pred             eCC
Q 014433          346 DLS  348 (424)
Q Consensus       346 d~~  348 (424)
                      +..
T Consensus       396 ~v~  398 (399)
T KOG0296|consen  396 EVP  398 (399)
T ss_pred             ecC
Confidence            864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=192.51  Aligned_cols=252  Identities=17%  Similarity=0.228  Sum_probs=197.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..|.+.|.-+.|+++|+ +||+++.|.+..+|.+...       ...+...++.+|..+|..+.|+|+.. +|++|+.|.
T Consensus       221 ~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d-------~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e  291 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYD-------VHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDE  291 (519)
T ss_pred             hhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecC-------cceeeeeeeecccCceEEEEECCCCC-eEEecCchH
Confidence            36999999999999997 8999999999999998762       22455778999999999999999988 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CCCeeEEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~v~  280 (424)
                      .+.+||+.++.....+.     .++...+.+++|.|++.. |++|+.|+.+..||+....    +....+- ...|.+++
T Consensus       292 ~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLA  361 (519)
T ss_pred             heeeccCCcchhhhhcc-----cCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch----hhcccccccceeEEEE
Confidence            99999999885432221     235678999999999976 4699999999999998644    2222222 24689999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      ..++|.+ +++.+.|..|++|+... ......+. ...+|++++.|.++. ++++.-.+..+++||+...          
T Consensus       362 it~Dgk~-vl~v~~d~~i~l~~~e~-~~dr~lis-e~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~----------  427 (519)
T KOG0293|consen  362 ITYDGKY-VLLVTVDKKIRLYNREA-RVDRGLIS-EEQPITSFSISKDGK-LALVNLQDQEIHLWDLEEN----------  427 (519)
T ss_pred             EcCCCcE-EEEEecccceeeechhh-hhhhcccc-ccCceeEEEEcCCCc-EEEEEcccCeeEEeecchh----------
Confidence            9999997 45556899999999876 33333333 467999999999996 6777778889999999853          


Q ss_pred             CCCCeeeEEEcCCCCC--cceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          361 DGPPELLFIHGGHTSK--ISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                          .++..+.||...  |..-+|.-....+++||++|+.|+||+..++.+-
T Consensus       428 ----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll  475 (519)
T KOG0293|consen  428 ----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL  475 (519)
T ss_pred             ----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence                555666777543  4455666544348999999999999999888653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.5e-25  Score=204.40  Aligned_cols=239  Identities=24%  Similarity=0.318  Sum_probs=203.9

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeE-EEecCCCCceEEEEeC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSD  199 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~  199 (424)
                      ..+|...|..+++.+..  .+++++.||++++|+-..        ........+.+|.+-|.. +++.+..+..|++|+.
T Consensus        10 l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~--------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKG--------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             eccCccchheeEecCCe--EEeecCCCCceeeeeccC--------cccccceecccCcceeeccceeccccCcceEeecc
Confidence            34799999999987744  689999999999999765        445556678888887766 8887755557999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |.+|.+|.+.+.      .++..+.+|...|.+++...++.  +++|+-|.++++|-+..-     ...+.+|+..|.++
T Consensus        80 D~~i~v~~~~~~------~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l-----~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   80 DTTIIVFKLSQA------EPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL-----VYSLQGHTASVWAV  146 (745)
T ss_pred             cceEEEEecCCC------CchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh-----hcccCCcchheeee
Confidence            999999998765      56778899999999999777764  569999999999987653     34578999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +.-|.+  .++||+.|.+|++|.-   +..++++.+|..-|..+++-+++.  |++|+.||.|++|++..          
T Consensus       147 ~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------  209 (745)
T KOG0301|consen  147 ASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------  209 (745)
T ss_pred             eecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC----------
Confidence            999977  4889999999999964   578999999999999999999874  78999999999999954          


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                           +++..+.||++.|++++...++. +++|+|+|++++||+..
T Consensus       210 -----e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  210 -----EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -----ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence                 77889999999999999666666 79999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=7.1e-25  Score=182.15  Aligned_cols=243  Identities=17%  Similarity=0.303  Sum_probs=185.9

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      -...|.++.|+|.+.. |++++.||.+++|++...          . ......|..++.+++|.+..  .+++|+.||.|
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~----------~-l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~v   77 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPAN----------S-LKLKFKHGAPLLDCAFADES--TIVTGGLDGQV   77 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccch----------h-hhhheecCCceeeeeccCCc--eEEEeccCceE
Confidence            3568999999998775 555579999999999872          2 22233489999999999843  49999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      +.+|++++..       ..+..|..+|.+|.+.+... .+++|+-|++|++||.|....   ...+. ....|.|+... 
T Consensus        78 r~~Dln~~~~-------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~---~~~~d-~~kkVy~~~v~-  144 (323)
T KOG1036|consen   78 RRYDLNTGNE-------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV---VGTFD-QGKKVYCMDVS-  144 (323)
T ss_pred             EEEEecCCcc-------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc---ccccc-cCceEEEEecc-
Confidence            9999998743       33556999999999998655 556999999999999997332   33332 34589998876 


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                       +. .|++|+.+..|.+||+|+...+.+... .-+-.+.++++-|++.. +++++-||+|.+=.+....+.+        
T Consensus       145 -g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~--------  213 (323)
T KOG1036|consen  145 -GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ--------  213 (323)
T ss_pred             -CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHh--------
Confidence             44 588999999999999999777664333 23457899999997764 7788999999876665542222        


Q ss_pred             CCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          363 PPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       363 ~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                        ...+.++.|.         .+|++++|+|-.. .|+|||.||.|.+||+...
T Consensus       214 --skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  214 --SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             --hhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch
Confidence              2234444443         2699999999876 7999999999999999765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.8e-25  Score=212.70  Aligned_cols=262  Identities=19%  Similarity=0.307  Sum_probs=205.4

Q ss_pred             eccC-CceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCC--CCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          122 INHD-GEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       122 ~~h~-~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ++|. ..|.+|..+|++. .+|||+  .||.++||+...-..+....  .....+.++..|.+.|.|+.|+|+|. +||+
T Consensus         9 v~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAs   86 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLAS   86 (942)
T ss_pred             cccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEee
Confidence            3444 5689999999997 799999  89999999987633222111  12345667888999999999999998 8999


Q ss_pred             EeCCCcEEEEeCCCC------------CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          197 GSDDAQICLWDINAA------------PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      |+.|+.|.||.....            .....++....+.+|...|.+++|+|++. ++|+++.|++|.||+.++.+   
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~---  162 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE---  162 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce---
Confidence            999999999998731            11234567788899999999999999875 77899999999999999964   


Q ss_pred             CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC------CCCEEEEEEcCCCCcEEEEEEC
Q 014433          265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH------KEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      .+..+.+|.+.|-.+.|+|-|+ +||+-+.|++|+||.+.+ ....+.+..+      ......+.|||+|. +|++...
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA  239 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNA  239 (942)
T ss_pred             eeeeeecccccccceEECCccC-eeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcC-eecchhh
Confidence            4788899999999999999999 599999999999999776 3444444332      34578999999997 5666533


Q ss_pred             ----CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC------C---------Cc-EEEEEeCCCc
Q 014433          339 ----GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC------E---------DW-VISSVAEDNI  398 (424)
Q Consensus       339 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~---------~~-~l~s~~~dg~  398 (424)
                          -.++.|.+-.+.              ..-..+-||..++..++|+|.      .         .| ++|+|+.|++
T Consensus       240 ~n~~~~~~~IieR~tW--------------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS  305 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTW--------------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS  305 (942)
T ss_pred             ccCCcceeEEEecCCc--------------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence                235777766443              334556799999999999983      1         12 7899999999


Q ss_pred             EEEEecCC
Q 014433          399 LQIWQMAE  406 (424)
Q Consensus       399 i~vw~~~~  406 (424)
                      |-||....
T Consensus       306 lSVW~T~~  313 (942)
T KOG0973|consen  306 LSVWNTAL  313 (942)
T ss_pred             EEEEecCC
Confidence            99998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.8e-25  Score=184.44  Aligned_cols=230  Identities=23%  Similarity=0.418  Sum_probs=183.0

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC--Ccc--c-----ceeeeecCCccEeeEEEecCCCcEEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN--KSL--E-----AMQIFKVHEGVVEDVAWHLRHEYLFG  244 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~--~-----~~~~~~~~~~~v~~~~~~~~~~~~~~  244 (424)
                      ...|.+.|++|...+....++++|+.||.|.+||++....-  .-+  +     ....-.+|.-.|.++.|-|.+.-+|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            34588999999999887779999999999999999865411  100  0     11123467889999999998878999


Q ss_pred             EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE
Q 014433          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ  322 (424)
Q Consensus       245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~  322 (424)
                      +++-|.+++|||..+.+.   ...+ .-++.|++-+++|-..  .++|+|..+-.|++-|+.+ +..-+++.+|...|.+
T Consensus       119 ssSFDhtlKVWDtnTlQ~---a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE---AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLA  193 (397)
T ss_pred             cccccceEEEeeccccee---eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEE
Confidence            999999999999998553   3333 3467788888888543  4788888899999999998 8899999999999999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEeeCCCC-CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433          323 VGWNPKNETILASCCLGRRLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI  401 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v  401 (424)
                      +.|+|..+++|++|+.||.|++||++.. .+.......+...+..+..-..|.+.|++++|+.++.+ +++++.|..+++
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~  272 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRV  272 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEE
Confidence            9999999999999999999999999876 33333322222223344456789999999999999995 778888999999


Q ss_pred             EecCCccC
Q 014433          402 WQMAENIY  409 (424)
Q Consensus       402 w~~~~~~~  409 (424)
                      |+...+.-
T Consensus       273 wn~~~G~n  280 (397)
T KOG4283|consen  273 WNMESGRN  280 (397)
T ss_pred             eecccCcc
Confidence            99988753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=6.3e-25  Score=191.32  Aligned_cols=263  Identities=20%  Similarity=0.291  Sum_probs=202.7

Q ss_pred             ccCCceeEEEecCCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~-~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .|.+.|++++|+|... .++|+|..-|.|-+||+.....      .......+..|..+|.+|.|+|.+...+++.|.||
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC------ccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            4889999999999765 7999999999999999963211      12334567789999999999999988999999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      +|++-|++.....    .+.....-...+.++.|+.....++ .+..=|.+.+||+|++..  ....+..|...|++|++
T Consensus       258 tiR~~D~~~~i~e----~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  258 TIRLQDFEGNISE----EVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeeeeecchhhH----HHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCc--cchhhhhhhcccceeec
Confidence            9999999876332    1222222345677888888877665 666667999999999764  34555678889999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +|..+++|||++.|++++|||+|+...   |+.....|...|.++.|||.+.. |++.+.|..|+|||.......     
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~-----  404 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK-----  404 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc-----
Confidence            999999999999999999999997532   34455579999999999999986 889999999999998522111     


Q ss_pred             cCCCCCeeeEEEcCCC-C--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          359 AEDGPPELLFIHGGHT-S--KISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~-~--~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                        . ++.....|.... .  ......|.|+.. +|+.|..-..|-|++-+.+.
T Consensus       405 --~-~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  405 --D-EPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             --C-CccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE
Confidence              1 112222222111 1  245678999888 79999988899999998887

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=208.76  Aligned_cols=215  Identities=17%  Similarity=0.319  Sum_probs=168.9

Q ss_pred             EEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCC--------------------------------CC-----
Q 014433          173 RLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP--------------------------------KN-----  214 (424)
Q Consensus       173 ~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------~~-----  214 (424)
                      .+. +|.+.|+++.|+++|. |||+|+.||.|+||.+....                                ..     
T Consensus       261 e~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            344 7999999999999998 89999999999999886600                                00     


Q ss_pred             -----------------CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          215 -----------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       215 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                                       ..-+++..+.+|.+.|.+|.|+.++  +|++++.|.+|++|++....+   +..+ .|...|+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C---L~~F-~HndfVT  413 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC---LKVF-SHNDFVT  413 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcce---eeEE-ecCCeeE
Confidence                             0005567788999999999999865  556999999999999998665   5444 5999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      ||+|+|...++|++|+-||.|+||++.. .+.+..... ..-|++++|.|+|+ ..+.|+.+|.+++|+.......+...
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d-~~Vv~W~Dl-~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISD-KKVVDWNDL-RDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCc-CeeEeehhh-hhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeee
Confidence            9999998888999999999999999987 455544444 58899999999996 68899999999999998754322111


Q ss_pred             CcCCCCCeeeEEE----cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          358 DAEDGPPELLFIH----GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       358 ~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                               +...    ..|. .|+++.|.|....-++.++.|..|+|+|..+.
T Consensus       491 ---------I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  491 ---------IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             ---------EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence                     1111    1123 79999999876543555578999999999543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.9e-25  Score=193.15  Aligned_cols=262  Identities=18%  Similarity=0.274  Sum_probs=204.0

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +..+.+.-+++|.+++-+|.|. +++.|+..|.+++|.+.+          ...+..+.+|-..|++|.|+.++. +|++
T Consensus        73 ~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelss----------G~LL~v~~aHYQ~ITcL~fs~dgs-~iiT  140 (476)
T KOG0646|consen   73 QVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSS----------GILLNVLSAHYQSITCLKFSDDGS-HIIT  140 (476)
T ss_pred             hhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecc----------ccHHHHHHhhccceeEEEEeCCCc-EEEe
Confidence            3345667789999999999885 777777999999999998          555667789999999999999998 8999


Q ss_pred             EeCCCcEEEEeCCCC---CCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          197 GSDDAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      |+.||.|.+|.+..-   .......++..+..|.-+|+++...+.+ .-.+++++.|.++++||+..+..   +.++ ..
T Consensus       141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti-~f  216 (476)
T KOG0646|consen  141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTI-TF  216 (476)
T ss_pred             cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEE-ec
Confidence            999999999987532   2223556788899999999999987753 23456999999999999998764   3332 35


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---------------CcceEecCCCC--CEEEEEEcCCCCcEEEE
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---------------TALHTFDSHKE--EVFQVGWNPKNETILAS  335 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---------------~~~~~~~~h~~--~v~~~~~sp~~~~~l~s  335 (424)
                      +..+.+++.+|-.. .+.+|+.+|.|.+.++....               ..+..+.+|.+  +|+|++.+-+| .+|++
T Consensus       217 p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlS  294 (476)
T KOG0646|consen  217 PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLS  294 (476)
T ss_pred             CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEe
Confidence            78899999999776 68999999999999876532               23455678887  99999999999 58999


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |+.||.|+|||+.+.              ++++++....++|+.+.+.|-.+..+..-.....+-.|++...+..
T Consensus       295 Gd~dg~VcvWdi~S~--------------Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~~  355 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSK--------------QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIPN  355 (476)
T ss_pred             eCCCCCEEEEecchH--------------HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCCc
Confidence            999999999999875              4444444456778888887765533433344445556666554443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1e-24  Score=198.59  Aligned_cols=236  Identities=22%  Similarity=0.368  Sum_probs=189.7

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  208 (424)
                      +-+.|+..+  .+|+|. ...|++|+...        +  ........+...|+++.|+++|. +|++|..+|.|.|||.
T Consensus       181 nlldWss~n--~laVal-g~~vylW~~~s--------~--~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~  246 (484)
T KOG0305|consen  181 NLLDWSSAN--VLAVAL-GQSVYLWSASS--------G--SVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDV  246 (484)
T ss_pred             hHhhcccCC--eEEEEe-cceEEEEecCC--------C--ceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEeh
Confidence            346677543  677765 45899999887        2  22222223378999999999998 7999999999999999


Q ss_pred             CCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          209 NAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                      ...+.      +..+.+ |...|-+++|.   ..++.+|+.++.|..+|+|..+...  ..+.+|...|..++|++++. 
T Consensus       247 ~~~k~------~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~-  314 (484)
T KOG0305|consen  247 KEQKK------TRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGN-  314 (484)
T ss_pred             hhccc------cccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCC-
Confidence            87644      344455 89999999998   3467899999999999999877522  24778999999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCcccCCCCcCCCCCe
Q 014433          288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQTPEDAEDGPPE  365 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~  365 (424)
                      .||+|+.|+.+.|||... ..++..+..|..+|..++|+|..+.+||+|+.  |++|++||..++....           
T Consensus       315 ~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-----------  382 (484)
T KOG0305|consen  315 QLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-----------  382 (484)
T ss_pred             eeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-----------
Confidence            699999999999999976 68899999999999999999998889999864  9999999999764322           


Q ss_pred             eeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCC
Q 014433          366 LLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAE  406 (424)
Q Consensus       366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~  406 (424)
                         .. ...+.|.++.|++..+-++.+.| .++.|.||++.+
T Consensus       383 ---~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  383 ---SV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             ---cc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence               22 22456999999999875665554 577899999976

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.6e-23  Score=170.92  Aligned_cols=244  Identities=17%  Similarity=0.241  Sum_probs=186.1

Q ss_pred             cCCceeEEEecCCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          124 HDGEVNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      +.-.|..++|-..... +..++.  |.+|+..++..          .+-++-+.||...|++|+.+|-+. .+++++.|+
T Consensus        55 kkyG~~~~~Fth~~~~-~i~sStk~d~tIryLsl~d----------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~  122 (311)
T KOG1446|consen   55 KKYGVDLACFTHHSNT-VIHSSTKEDDTIRYLSLHD----------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDK  122 (311)
T ss_pred             ccccccEEEEecCCce-EEEccCCCCCceEEEEeec----------CceEEEcCCCCceEEEEEecCCCC-eEEecccCC
Confidence            3346777777665543 333444  78999999987          566888999999999999999886 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec---cCCCeeE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA---HQSEVNC  278 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~  278 (424)
                      +|++||++..++..      .+  +...-..++|.|.|- +||++.....|++||+|.-. ..|...+.-   .....+.
T Consensus       123 tvrLWDlR~~~cqg------~l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~d-kgPF~tf~i~~~~~~ew~~  192 (311)
T KOG1446|consen  123 TVRLWDLRVKKCQG------LL--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFD-KGPFTTFSITDNDEAEWTD  192 (311)
T ss_pred             eEEeeEecCCCCce------EE--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccC-CCCceeEccCCCCccceee
Confidence            99999998664422      12  223344678999984 77788777799999999754 234444433   3667899


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCE---EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV---FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v---~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |.|+|+|++ |+.+...+.+++.|.-. +..+.++..+...-   .+.+|+|+++ ++++|+.||+|.+|+++++.    
T Consensus       193 l~FS~dGK~-iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~----  265 (311)
T KOG1446|consen  193 LEFSPDGKS-ILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK----  265 (311)
T ss_pred             eEEcCCCCE-EEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc----
Confidence            999999996 55667788999999988 67888887765433   6889999996 78899999999999998763    


Q ss_pred             CCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          356 PEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                .+..+.+ +..++..+.|+|.-. +++|+  +..+.+|=+....+
T Consensus       266 ----------~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  266 ----------KVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL  307 (311)
T ss_pred             ----------EeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence                      3445555 688899999999876 56664  56799998775544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=197.73  Aligned_cols=221  Identities=17%  Similarity=0.346  Sum_probs=173.7

Q ss_pred             CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ....+.+|+..|.++++.|.|. .|++|+.|..|++||+...... ..++.+....  ...|++++|++.+..+| +.+.
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iL-vvsg  234 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQIL-VVSG  234 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEE-EEec
Confidence            3456888999999999999998 7999999999999999765321 2233333333  34799999999998776 5666


Q ss_pred             CCeEEEEEcCCCCC---------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-----
Q 014433          249 DQYLLIWDLRTPSV---------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-----  314 (424)
Q Consensus       249 dg~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----  314 (424)
                      ....+|+|-.....         +..+...++|...++|.+|+|..+..|+|++.||+++|||+.+....+..+.     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            78899998754321         1223445789999999999999998999999999999999998665555554     


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC--CcceEEeCCCCCcEEEE
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSWNPCEDWVISS  392 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s  392 (424)
                      +..-+++.++|+|++. ++|+|+.||.|.+|+......           ...+..-..|..  .|+++.|+++|+ .|+|
T Consensus       315 g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlS  381 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGN-YLLS  381 (641)
T ss_pred             CcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccc-hhhh
Confidence            2345789999999997 699999999999999865421           133445567766  899999999999 5889


Q ss_pred             EeCCCcEEEEecCCc
Q 014433          393 VAEDNILQIWQMAEN  407 (424)
Q Consensus       393 ~~~dg~i~vw~~~~~  407 (424)
                      -|.|+++++||+...
T Consensus       382 Rg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCCCceeeeecccc
Confidence            999999999999764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=198.51  Aligned_cols=269  Identities=16%  Similarity=0.326  Sum_probs=195.6

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ++...+.|.+.|..+.|.| +..+|++++.|.++++||+..        ....-...+.+|...|.+++|.|.++..|++
T Consensus        92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~--------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t  162 (720)
T KOG0321|consen   92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT--------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCT  162 (720)
T ss_pred             hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc--------ceeecceeecccccccchhhhccCCCcceee
Confidence            3456678999999999999 777999999999999999987        2233333588999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCCCC--------------C---cc----cceeeeecCCccEee---EEEecCCCcEEEEEeC-CCe
Q 014433          197 GSDDAQICLWDINAAPKN--------------K---SL----EAMQIFKVHEGVVED---VAWHLRHEYLFGSVGD-DQY  251 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~--------------~---~~----~~~~~~~~~~~~v~~---~~~~~~~~~~~~s~~~-dg~  251 (424)
                      |+.||.|.|||++.....              .   ..    +.+.....+...|.+   +.+..|.. .||+++. |+.
T Consensus       163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~  241 (720)
T KOG0321|consen  163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADST  241 (720)
T ss_pred             ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcc
Confidence            999999999999765311              0   00    111222334444444   44445554 4566666 999


Q ss_pred             EEEEEcCCCCCCC---Ce--eeeecc---CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCC--E
Q 014433          252 LLIWDLRTPSVSK---PV--QSVVAH---QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEE--V  320 (424)
Q Consensus       252 i~i~d~~~~~~~~---~~--~~~~~~---~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~--v  320 (424)
                      |+|||+|......   +.  ..+..|   .-.+.++..+..|.+++|++. |+.|++|+++... .++..+.++...  -
T Consensus       242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~  320 (720)
T KOG0321|consen  242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFY  320 (720)
T ss_pred             eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceee
Confidence            9999999765321   11  111222   346788888888998777766 9999999998754 355555554332  2


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      ..-..+|++. ++++|+.|....||.+....             .....+.||.-.|+.++|.|....=++++++|..++
T Consensus       321 vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e-------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k  386 (720)
T KOG0321|consen  321 VKSELSPDDC-SLLSGSSDEQAYIWVVSSPE-------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK  386 (720)
T ss_pred             eeeecCCCCc-eEeccCCCcceeeeeecCcc-------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence            2334678885 79999999999999998753             334456799999999999986544578889999999


Q ss_pred             EEecCCccCC
Q 014433          401 IWQMAENIYH  410 (424)
Q Consensus       401 vw~~~~~~~~  410 (424)
                      ||++..++.+
T Consensus       387 iW~l~~~l~e  396 (720)
T KOG0321|consen  387 IWRLSNGLEE  396 (720)
T ss_pred             EEeccCchhh
Confidence            9999666443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.6e-26  Score=218.38  Aligned_cols=261  Identities=26%  Similarity=0.398  Sum_probs=202.6

Q ss_pred             EEEecCCCCcEEEEEeC----------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc---eEEE
Q 014433          130 RARYMPQNPFLIATKTV----------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG---HLLS  196 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s  196 (424)
                      .++|+|.+..++|+|..          +.++-||.+.......    ..++...+. -....+.|+|.+.+..   +|+.
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~----dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS----DLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc----ccccccccc-ccccceeeeecccCCCccceeec
Confidence            47899988767777643          4556666655422111    112222222 3456789999988775   5899


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      |..||.|.+||...-........+.....|.+.|..+.|++...+++|+|+.||.|.|||+...+...... .....+.|
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI  164 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEI  164 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccc
Confidence            99999999999987533455556777888999999999999999999999999999999999865421111 22356789


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC--CEEEEEEcCCCCcEEEEEECCC---eEEEeeCCCCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE--EVFQVGWNPKNETILASCCLGR---RLMVWDLSRID  351 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~~  351 (424)
                      .+++|+..-.++||+++.+|.+.|||+|. .+++..+..+..  .+..++|+|+...-+++++.|.   .|.+||+|...
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            99999999999999999999999999998 577777766554  5789999999877777777754   59999998753


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                                   ..+..+.+|...|.++.|++.+..+++|++.|+.|.+|+.+++.+-
T Consensus       244 -------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  244 -------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             -------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence                         4456668999999999999999668999999999999999997543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=7.2e-25  Score=182.08  Aligned_cols=214  Identities=21%  Similarity=0.345  Sum_probs=167.6

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ..+.....|.++|+++.|+|... +|++|+.|++|++||+.+.        ..+..........+|.+|.|+|.|. +|+
T Consensus       163 PvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~--------saKrA~K~~qd~~~vrsiSfHPsGe-fll  232 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKT--------SAKRAFKVFQDTEPVRSISFHPSGE-FLL  232 (430)
T ss_pred             ceEeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccH--------HHHHHHHHhhccceeeeEeecCCCc-eEE
Confidence            44556678999999999999775 9999999999999999872        2222223333567899999999998 799


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-C
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-S  274 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~  274 (424)
                      .|....++++||+++.++-...   ..-..|.+.|+++.+++.++ +.++++.||.|++||--++++...+.  .+|. .
T Consensus       233 vgTdHp~~rlYdv~T~Qcfvsa---nPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gs  306 (430)
T KOG0640|consen  233 VGTDHPTLRLYDVNTYQCFVSA---NPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGS  306 (430)
T ss_pred             EecCCCceeEEeccceeEeeec---CcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH--hhcCCc
Confidence            9999999999999987543221   12356999999999999986 77899999999999988776633332  3454 5


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-----------------------------------------
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-----------------------------------------  313 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----------------------------------------  313 (424)
                      .|++..|..++++ +++.+.|..+++|.+.+ ++++..+                                         
T Consensus       307 evcSa~Ftkn~ky-iLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt  384 (430)
T KOG0640|consen  307 EVCSAVFTKNGKY-ILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART  384 (430)
T ss_pred             eeeeEEEccCCeE-EeecCCcceeeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence            7899999999985 77888999999999876 3322221                                         


Q ss_pred             --------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          314 --------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       314 --------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                              .+|++.+..+.-||.++ .+++|+.|-.+++|--+
T Consensus       385 adr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  385 ADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence                    25788889999999887 68899999999999654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.93  E-value=4.6e-23  Score=193.12  Aligned_cols=281  Identities=19%  Similarity=0.270  Sum_probs=212.7

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHL  194 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l  194 (424)
                      ......+.-+..|.+++|+|..++++|.|+.+|.|.+||+......+.    .........|..+++.+.|..+.. .-|
T Consensus       233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~~vvW~~~~~~~~f  308 (555)
T KOG1587|consen  233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVTAVVWLQNEHNTEF  308 (555)
T ss_pred             CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeEEEEEeccCCCCce
Confidence            333445567789999999999999999999999999999998443321    111223446899999999976533 239


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeee------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-C----
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-S----  263 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~----  263 (424)
                      ++++.||.|..|+++.-.............      .....+++++|.+..++.|+.|+..|.|.--+-..... .    
T Consensus       309 ~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  309 FSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             EEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence            999999999999887654321111111111      12347899999999999999999999998744332221 1    


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      +....+..|.++|+++.++|.+..+|++++ |.+++||.......|+..+..+...|++++|||..+.+|+++..||.|.
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence            224456678999999999999987777777 9999999988447888889888888999999999999999999999999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCC
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD  414 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~  414 (424)
                      |||+.....            ..+....-+....+.+.|++.|+ +|++|...|.+.+|++..+......+
T Consensus       468 iWDLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~~l~~~~~~  525 (555)
T KOG1587|consen  468 IWDLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSESLAVPSPN  525 (555)
T ss_pred             hhhhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCchhhccCcc
Confidence            999986532            22223333355677888999999 89999999999999999887766544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.9e-26  Score=209.06  Aligned_cols=236  Identities=24%  Similarity=0.374  Sum_probs=203.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ...|...|.++..-..+ ..+++|+.+-.+-+|.+..          ..++..+.+|..+|-+|.|++... +|++|+.+
T Consensus        24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k----------p~~i~S~~~hespIeSl~f~~~E~-Llaagsas   91 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK----------PNAITSLTGHESPIESLTFDTSER-LLAAGSAS   91 (825)
T ss_pred             hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC----------CchhheeeccCCcceeeecCcchh-hhcccccC
Confidence            34688899999885444 4899999999999999987          455667999999999999999776 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |+|++||+....      .++.+.+|...+..+.|+|.+. ++|+|+.|+.+++||++...+   ...+.+|...+.++.
T Consensus        92 gtiK~wDleeAk------~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc---~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   92 GTIKVWDLEEAK------IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC---SHTYKSHTRVVDVLR  161 (825)
T ss_pred             Cceeeeehhhhh------hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCc---eeeecCCcceeEEEe
Confidence            999999998763      3556778999999999999987 458999999999999997554   778888999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+|+|. +++.|+.|.+++|||++. ++.+..|..|.+.+.++.|+|.. .++++|+.|+++++||+++.          
T Consensus       162 lsP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletf----------  228 (825)
T KOG0267|consen  162 LSPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETF----------  228 (825)
T ss_pred             ecCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeecccee----------
Confidence            999998 599999999999999998 78999999999999999999987 68999999999999999864          


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                          +++-........|.+.+|+|++. .+.+|...
T Consensus       229 ----e~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~  259 (825)
T KOG0267|consen  229 ----EVISSGKPETDGVRSLAFNPDGK-IVLSGEQI  259 (825)
T ss_pred             ----EEeeccCCccCCceeeeecCCce-eeecCchh
Confidence                44555555567799999999998 56665543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=5e-24  Score=173.61  Aligned_cols=209  Identities=19%  Similarity=0.241  Sum_probs=178.3

Q ss_pred             EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (424)
Q Consensus       173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  252 (424)
                      .+++|..+++.+.++.+|. +|++|+.|.+..+|--..+      +.+..+.+|.+.|+++..+.+...+ ++|+.|.++
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG------erlGty~GHtGavW~~Did~~s~~l-iTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG------ERLGTYDGHTGAVWCCDIDWDSKHL-ITGSADQTA   76 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCC------ceeeeecCCCceEEEEEecCCccee-eecccccee
Confidence            4789999999999999998 8999999999999987666      3467789999999999999888765 599999999


Q ss_pred             EEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe----CCCcEEEEECCCC------CCcceEecCCCCCEEE
Q 014433          253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS----TDKTVKLFDLRKI------STALHTFDSHKEEVFQ  322 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~----~dg~i~iwd~~~~------~~~~~~~~~h~~~v~~  322 (424)
                      ++||+.++++   +..++ ...+|..+.|++.|..++++..    ..+.|.++|++..      ..|...+..+.+.++.
T Consensus        77 kLWDv~tGk~---la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~  152 (327)
T KOG0643|consen   77 KLWDVETGKQ---LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS  152 (327)
T ss_pred             EEEEcCCCcE---EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence            9999999886   55443 4788999999998875444422    2468999999942      4678888889999999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      +.|.|-++ +|++|..||.|.+||++++.             +++.....|...|++++++++.. ++++++.|.+.++|
T Consensus       153 a~Wg~l~~-~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  153 ALWGPLGE-TIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV  217 (327)
T ss_pred             eeecccCC-EEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence            99999996 79999999999999999864             55566677888999999999999 69999999999999


Q ss_pred             ecCCcc
Q 014433          403 QMAENI  408 (424)
Q Consensus       403 ~~~~~~  408 (424)
                      |+.+-.
T Consensus       218 D~~tl~  223 (327)
T KOG0643|consen  218 DVRTLE  223 (327)
T ss_pred             ecccee
Confidence            998754

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.8e-23  Score=162.52  Aligned_cols=225  Identities=24%  Similarity=0.364  Sum_probs=173.2

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC------------------------------
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------------------  163 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~------------------------------  163 (424)
                      +.+...+...|.+.|+|.+|+|.|. +||+|+.|.+|++..++.......                              
T Consensus        78 p~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   78 PSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             CeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            3556666667899999999999997 999999999999977654211100                              


Q ss_pred             ------------CCCCCCCcEEEecCCCceeEE-EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec-CCcc
Q 014433          164 ------------LDGACSPDLRLRGHSTEGYGL-SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGV  229 (424)
Q Consensus       164 ------------~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~  229 (424)
                                  .-+.......+.+|.+-|.++ .|+  +. ++++|+.|.+|++||++-......+..-..-.+ ..+.
T Consensus       157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa  233 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA  233 (350)
T ss_pred             ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence                        012334456677888888776 454  44 899999999999999987654433321110001 2367


Q ss_pred             EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC---
Q 014433          230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI---  306 (424)
Q Consensus       230 v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~---  306 (424)
                      |.+++..|.|+ ++++|-.|....+||+|.+..   ++.+..|...|.|+.|+|. .+++++++.|-.|++-|+...   
T Consensus       234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~---iq~f~phsadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~  308 (350)
T KOG0641|consen  234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAH  308 (350)
T ss_pred             eEEEEECCCcc-eeeeccCCCceEEEEeeCCce---eeeeCCCccceeEEEeCCC-ceEEEEecccceEEEeecccchhh
Confidence            99999999986 778999999999999999774   8888999999999999994 557999999999999998741   


Q ss_pred             CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          307 STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       307 ~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      .-++.....|+..+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus       309 el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 ELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN  349 (350)
T ss_pred             cCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence            235556677999999999999884 57799999999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=173.41  Aligned_cols=273  Identities=18%  Similarity=0.309  Sum_probs=207.6

Q ss_pred             cEEEEEEeccCCceeEEEec--CCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC
Q 014433          115 KVQIIQQINHDGEVNRARYM--PQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK  188 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~--p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  188 (424)
                      +.+.+....-+-.++++.|+  |+.+..||.|+.    .+.|.|-.+.....+      ...... ..|.-+++.+.|.|
T Consensus        34 r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e------~~~~a~-fd~~YP~tK~~wiP  106 (364)
T KOG0290|consen   34 RRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE------LVEDAN-FDHPYPVTKLMWIP  106 (364)
T ss_pred             ccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc------eeccCC-CCCCCCccceEecC
Confidence            33444556667788899998  455668999874    467888777652211      111112 46899999999999


Q ss_pred             CCC----ceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          189 FKE----GHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       189 ~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      +..    .+||+++  -.+++|.+...........   ...-..+..++++..|+.-.++++.+.+-|-+..|||+.++.
T Consensus       107 d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~  184 (364)
T KOG0290|consen  107 DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV  184 (364)
T ss_pred             CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence            863    3466554  4899999975322111111   111223567999999999999999999999999999999874


Q ss_pred             CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECC
Q 014433          262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      .......+.+|...|..|+|...+..+||+.+.||+|++||+|........+...  ..+...++|+++..+++|+-..|
T Consensus       185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d  264 (364)
T KOG0290|consen  185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD  264 (364)
T ss_pred             ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence            3223456678999999999999888899999999999999999865544444432  46889999999998899887765


Q ss_pred             C-eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          340 R-RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       340 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      + .|.|.|++..             ...+..+++|.+.|++++|.|..+..|+|+|+|..+.+||+.....
T Consensus       265 S~~V~iLDiR~P-------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  265 SNKVVILDIRVP-------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             CceEEEEEecCC-------------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            4 5999999973             4678889999999999999999888999999999999999987655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9e-24  Score=169.97  Aligned_cols=219  Identities=19%  Similarity=0.303  Sum_probs=175.0

Q ss_pred             EEEEEeccCCceeEEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc-e
Q 014433          117 QIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-H  193 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~  193 (424)
                      .+....+|+++|..++|..  .|. +||+++.||.|.||.-..        +.+........|...|++++|.|.+-+ +
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~--------g~w~k~~e~~~h~~SVNsV~wapheygl~  118 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN--------GRWTKAYEHAAHSASVNSVAWAPHEYGLL  118 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC--------CchhhhhhhhhhcccceeecccccccceE
Confidence            3455668999999999965  564 999999999999999887        556777778889999999999998654 4


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC---C----------CcEEEEEeCCCeEEEEEcCCC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---H----------EYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~----------~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      |++++.||.|.|.+.+....   ....+....|.-.|++++|.|.   +          ...|++|+.|..|+||+....
T Consensus       119 LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  119 LACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             EEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence            88899999999999876521   1223445679999999999987   3          134789999999999999886


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCC---CeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFN---EWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~---~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      . ...-..+.+|.+-|+.++|.|..   ...||+++.||++.||-.+....+  ...+..-...+.++.||+.|. +|+.
T Consensus       196 ~-w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaV  273 (299)
T KOG1332|consen  196 S-WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAV  273 (299)
T ss_pred             c-hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEE
Confidence            4 33344578999999999999964   457999999999999988753222  222333457899999999995 8999


Q ss_pred             EECCCeEEEeeCCC
Q 014433          336 CCLGRRLMVWDLSR  349 (424)
Q Consensus       336 ~~~dg~i~iwd~~~  349 (424)
                      ++.|+.|.+|.-+.
T Consensus       274 s~GdNkvtlwke~~  287 (299)
T KOG1332|consen  274 SGGDNKVTLWKENV  287 (299)
T ss_pred             ecCCcEEEEEEeCC
Confidence            99999999997654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.7e-25  Score=187.43  Aligned_cols=214  Identities=24%  Similarity=0.425  Sum_probs=176.0

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      +..+.+|...|.+++=+|.....+++|+.||.|++||+.+..      +...+..|.+.|..|++..  . -+++++.|.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~--~-~~~tvgdDK  129 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ--T-SFFTVGDDK  129 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh------hhheeecccCceeeEEecc--c-ceEEecCCc
Confidence            345789999999999999875679999999999999998763      4566788999999999986  2 345899999


Q ss_pred             eEEEEEcCCCC-----------------------------------CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433          251 YLLIWDLRTPS-----------------------------------VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       251 ~i~i~d~~~~~-----------------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                      +|+.|-+..+.                                   ...|+..+.-....|.++.|+|....+|++++.|
T Consensus       130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            99999743210                                   0124444444556788999999988899999999


Q ss_pred             CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433          296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS  375 (424)
Q Consensus       296 g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  375 (424)
                      +.|.|||+|. ..|++.+.. ...-+.|+|+|.. ..+++++.|..++.||++...             ..+..+.+|.+
T Consensus       210 rsIvLyD~R~-~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs  273 (433)
T KOG0268|consen  210 RSIVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS  273 (433)
T ss_pred             CceEEEeccc-CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence            9999999998 677766654 5567889999965 579999999999999999865             56778899999


Q ss_pred             CcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      .|.+++|+|.|+ -+++||.|.+|+||....+--+
T Consensus       274 AV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR  307 (433)
T KOG0268|consen  274 AVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR  307 (433)
T ss_pred             eEEEeccCCCcc-hhccccccceEEEeecCCCcch
Confidence            999999999999 6999999999999999877433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.9e-24  Score=194.75  Aligned_cols=255  Identities=20%  Similarity=0.271  Sum_probs=203.8

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe-cCCCCceEEEEe
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW-SKFKEGHLLSGS  198 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~  198 (424)
                      +...|.+-|+.+....++. -|++++.|-+|++|+....        ......++..|..-|.||+. .++.. ++|+|+
T Consensus        68 sme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~--------~~~c~stir~H~DYVkcla~~ak~~~-lvaSgG  137 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKD--------NTFCMSTIRTHKDYVKCLAYIAKNNE-LVASGG  137 (735)
T ss_pred             hhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccC--------cchhHhhhhcccchheeeeecccCce-eEEecC
Confidence            3446899999999998886 6888999999999999872        22445678889999999999 55444 899999


Q ss_pred             CCCcEEEEeCCCCCC--C---Ccccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          199 DDAQICLWDINAAPK--N---KSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~--~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      -|+.|.+||++++..  .   ..+. ...+. ++..+|.+++.++.+ .+|++|+..+.+++||.++.+.   +..+.+|
T Consensus       138 LD~~IflWDin~~~~~l~~s~n~~t-~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---imkLrGH  212 (735)
T KOG0308|consen  138 LDRKIFLWDINTGTATLVASFNNVT-VNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---IMKLRGH  212 (735)
T ss_pred             CCccEEEEEccCcchhhhhhccccc-cccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc---eeeeecc
Confidence            999999999997733  1   1111 12222 788999999999987 5888999999999999999764   7778899


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ...|.++..+++|.. +++++.||+|++||++. .+++.++..|...|+++..+|+-. .+++|+.||.|..=|+++...
T Consensus       213 TdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  213 TDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             ccceEEEEEcCCCCe-EeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchh
Confidence            999999999999985 88999999999999998 899999999999999999999885 799999999999999987421


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                 ..+++.   ...+|..+..+.+... +-++..|+.|+-|.....
T Consensus       290 -----------~tlick---~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  290 -----------STLICK---EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             -----------heEeec---CCCchhhhhhccccCC-ceeeeccccceecCCccc
Confidence                       122222   2345666666654442 345567888888877544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=174.45  Aligned_cols=247  Identities=19%  Similarity=0.343  Sum_probs=185.5

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ...+.|.. ..|+.|++.|. +||+|+.+|.|.|||+.+          ..+...+.+|..+|.+++||++|. .|+++|
T Consensus        18 ~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS   84 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGR-KLLTSS   84 (405)
T ss_pred             ceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCC-Eeeeec
Confidence            34555555 88999999986 899999999999999998          456677889999999999999998 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEee----------------------------------------------
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED----------------------------------------------  232 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~----------------------------------------------  232 (424)
                      .|..|.+||+..+.....+.       ..++|+.                                              
T Consensus        85 ~D~si~lwDl~~gs~l~rir-------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas  157 (405)
T KOG1273|consen   85 RDWSIKLWDLLKGSPLKRIR-------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS  157 (405)
T ss_pred             CCceeEEEeccCCCceeEEE-------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence            99999999999886432221       1111111                                              


Q ss_pred             -EEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--
Q 014433          233 -VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--  308 (424)
Q Consensus       233 -~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--  308 (424)
                       ..|.+.|+++ .+|...|.+.++|..+.++   +..++... ..|..+.++..|+ .|+.-+.|+.|+.|+++....  
T Consensus       158 ~~~fdr~g~yI-itGtsKGkllv~~a~t~e~---vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~  232 (405)
T KOG1273|consen  158 HGVFDRRGKYI-ITGTSKGKLLVYDAETLEC---VASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEG  232 (405)
T ss_pred             cccccCCCCEE-EEecCcceEEEEecchhee---eeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccC
Confidence             2245555544 4888899999999988654   55444444 6788899999888 588889999999999873211  


Q ss_pred             ------cceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcce
Q 014433          309 ------ALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISD  379 (424)
Q Consensus       309 ------~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~  379 (424)
                            +.+.++.  .+.+-.+++|+.+|.+++|+...-..++||.-..+              .++..+.|.. ....+
T Consensus       233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--------------sLVKILhG~kgE~l~D  298 (405)
T KOG1273|consen  233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--------------SLVKILHGTKGEELLD  298 (405)
T ss_pred             ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--------------ceeeeecCCchhheee
Confidence                  1122221  12345678999999866666666778999998876              6677777766 56788


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +.|+|-.+ +|++. ..|.++||....
T Consensus       299 V~whp~rp-~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  299 VNWHPVRP-IIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ccccccee-eeeec-cCCceEEEEeec
Confidence            99999988 67776 688999998764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.5e-24  Score=174.95  Aligned_cols=206  Identities=19%  Similarity=0.352  Sum_probs=171.1

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      +..+.|..-|.+++|+.+.. .|+||+.+..++|||++..         ..+...+.+|.+.|..+.|..... .|++++
T Consensus        94 lhsf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p---------~App~E~~ghtg~Ir~v~wc~eD~-~iLSSa  162 (334)
T KOG0278|consen   94 LHSFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRP---------KAPPKEISGHTGGIRTVLWCHEDK-CILSSA  162 (334)
T ss_pred             hhhhhhhheeeeEEecccch-hhhccchHHHhhhhhccCC---------CCCchhhcCCCCcceeEEEeccCc-eEEeec
Confidence            44678999999999999775 7999999999999999873         234457889999999999998766 688889


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .|++|++||.+++....++      . ...+|+++..+++|. ++ +....+.|.+||..+-..   +..+. -...|.+
T Consensus       163 dd~tVRLWD~rTgt~v~sL------~-~~s~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~~---lKs~k-~P~nV~S  229 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSL------E-FNSPVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFGL---LKSYK-MPCNVES  229 (334)
T ss_pred             cCCceEEEEeccCcEEEEE------e-cCCCCcceeeccCCC-EE-EEecCceeEEeccccccc---eeecc-Ccccccc
Confidence            9999999999998554333      2 467899999999997 43 666788999999998553   43332 3567889


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ...+|+.. ++++|+.|..++.||..+ +..+..+ ++|-++|.|+.|+|+|. +.|+|+.||+|+||.+....
T Consensus       230 ASL~P~k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  230 ASLHPKKE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccccCCCc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence            99999886 799999999999999998 5666664 89999999999999997 79999999999999987653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.9e-22  Score=181.29  Aligned_cols=251  Identities=11%  Similarity=0.093  Sum_probs=172.8

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.+...+.+++|+|++..++++++.++.|++||...          ......+..+. .+..++|+|++..++++++.+
T Consensus        26 ~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        26 TFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT----------GEVIGTLPSGP-DPELFALHPNGKILYIANEDD   94 (300)
T ss_pred             EEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCC
Confidence            3444455778999999886667888899999999876          22233344333 356789999988444556678


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +.|++||+.+..      .+..+. +...+.+++|+|++..++ ++..+ ..+.+||.++...   ..... ....+.++
T Consensus        95 ~~l~~~d~~~~~------~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~  162 (300)
T TIGR03866        95 NLVTVIDIETRK------VLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFA  162 (300)
T ss_pred             CeEEEEECCCCe------EEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEE
Confidence            999999997642      222232 234568899999987554 55555 4577889877543   22222 23456789


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +|+|++..+++++..++.|++||+++ ++.+..+..+.       .....++|+|+++.++++.+.++.+.+||+.+.. 
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-  240 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-  240 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-
Confidence            99999986656666799999999997 45555443221       1235689999998656666667789999997642 


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                                   +.... .+...+.+++|+|++++++++.+.+|.|++||+.++.+.
T Consensus       241 -------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       241 -------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             -------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence                         22222 123468899999999954444567999999999988653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=181.15  Aligned_cols=247  Identities=17%  Similarity=0.252  Sum_probs=191.8

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      +++++-.....+.+|.+.+.          .......--.++|.+++-+|.|. +|+.|...|.|++|.+.++.      
T Consensus        52 yllsaq~~rp~l~vw~i~k~----------~~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~------  114 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKK----------DQVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGI------  114 (476)
T ss_pred             heeeecccCccccccccCch----------hhhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecccc------
Confidence            44555455568999999872          11112223567899999999887 67777799999999999884      


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC------CCCCCCeeeeeccCCCeeEEEecCC--CCeEEE
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT------PSVSKPVQSVVAHQSEVNCLAFNPF--NEWILA  290 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~l~  290 (424)
                      .+..+.+|-..|+++.|+.++.++| +|+.||.|.+|++-.      ....+++..+..|.-+|+.+...+-  .. .++
T Consensus       115 LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~-rl~  192 (476)
T KOG0646|consen  115 LLNVLSAHYQSITCLKFSDDGSHII-TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA-RLY  192 (476)
T ss_pred             HHHHHHhhccceeEEEEeCCCcEEE-ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc-eEE
Confidence            4555678999999999999998654 999999999998742      1235788899999999999987664  33 589


Q ss_pred             EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC--CCCcCCCCCeeeE
Q 014433          291 TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT--PEDAEDGPPELLF  368 (424)
Q Consensus       291 tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~  368 (424)
                      |++.|.++++||+.. +..+.++.. ...+.+++.+|.+. .++.|+.+|.|.+.++........  ...........+.
T Consensus       193 TaS~D~t~k~wdlS~-g~LLlti~f-p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~  269 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSL-GVLLLTITF-PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN  269 (476)
T ss_pred             EecCCceEEEEEecc-ceeeEEEec-CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence            999999999999998 677777664 67899999999885 789999999999998876542111  0000011224466


Q ss_pred             EEcCCCC--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          369 IHGGHTS--KISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       369 ~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      .+.||.+  .|++++.+-||. +|++|+.||.|+|||+....
T Consensus       270 ~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  270 VLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             eeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHH
Confidence            6788988  999999999999 89999999999999997754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=191.18  Aligned_cols=245  Identities=19%  Similarity=0.331  Sum_probs=195.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      +..|.+.-+.|+|.|+|. +|++++.||.|++|+.......+.         .+.-+...|.+++-..   ++|++|+.+
T Consensus         9 Ryaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~---------ti~~~g~~v~~ia~~s---~~f~~~s~~   75 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE---------TIDISGELVSSIACYS---NHFLTGSEQ   75 (933)
T ss_pred             hhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc---------hhhccCceeEEEeecc---cceEEeecc
Confidence            457888999999999998 899999999999999887432221         1222777788887643   379999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ++|.+|.+..+....      .+....-++++++++-+|. .+|.|+.|-.|++.++.....   ...+.+|.++|.++.
T Consensus        76 ~tv~~y~fps~~~~~------iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~  145 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDT------ILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLS  145 (933)
T ss_pred             ceEEEeeCCCCCccc------eeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccch---heeecccCCceeeee
Confidence            999999998765432      2334567899999999886 567999999999999988664   667789999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------C-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      |+|.+. +||+.+.||.|++||+.+ +....++.+       . ...+..++|+|++.. |+..+.|+.|++|+......
T Consensus       146 ~~p~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  146 YDPKGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             EcCCCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCcee
Confidence            999998 799999999999999997 554444432       1 456788999999865 66777899999999987632


Q ss_pred             ccCCCCcCCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          353 EQTPEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                                    .+.+.  .+...+..+.|+|+|.| ||+++.||.|.|||+.+
T Consensus       223 --------------~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  223 --------------QFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT  263 (933)
T ss_pred             --------------heeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence                          33332  23445899999999995 89999999999999997

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.8e-24  Score=187.81  Aligned_cols=254  Identities=21%  Similarity=0.326  Sum_probs=201.2

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCCCCce
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~  193 (424)
                      .+-+..+.|.+-|.+++.+...+ .+.||+ .|.|+|||+....+.       .++..+..  ...-|.++...|++. .
T Consensus       410 arq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k-------~PvsqLdcl~rdnyiRSckL~pdgr-t  479 (705)
T KOG0639|consen  410 ARQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNK-------SPVSQLDCLNRDNYIRSCKLLPDGR-T  479 (705)
T ss_pred             HHhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCC-------CccccccccCcccceeeeEecCCCc-e
Confidence            34556778999999999998765 788877 589999999875332       33333332  345688999999998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      |++|+.-.++.|||+......    ....+....-.+.+++.+|+.+..| +++.||.|.|||+++...   +..+++|.
T Consensus       480 LivGGeastlsiWDLAapTpr----ikaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhnq~~---VrqfqGht  551 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPR----IKAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHNQTL---VRQFQGHT  551 (705)
T ss_pred             EEeccccceeeeeeccCCCcc----hhhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEccccee---eecccCCC
Confidence            899999999999999875431    1112222334677899999987666 788899999999998664   88899999


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      ..+.||..+++|.+ |.||+-|.+|+.||+|. +..+..... .+.|.++..+|.++ .|+.|-..+.+.|-..+..   
T Consensus       552 DGascIdis~dGtk-lWTGGlDntvRcWDlre-grqlqqhdF-~SQIfSLg~cP~~d-WlavGMens~vevlh~skp---  624 (705)
T KOG0639|consen  552 DGASCIDISKDGTK-LWTGGLDNTVRCWDLRE-GRQLQQHDF-SSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP---  624 (705)
T ss_pred             CCceeEEecCCCce-eecCCCccceeehhhhh-hhhhhhhhh-hhhheecccCCCcc-ceeeecccCcEEEEecCCc---
Confidence            99999999999985 99999999999999998 444444432 57899999999997 6899999998888777652   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                  -.+.+.-|.+.|.++.|.+.|+| +++.+.|+.+..|+.--+
T Consensus       625 ------------~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  625 ------------EKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             ------------cceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc
Confidence                        23445668899999999999995 888899999999998766

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.1e-22  Score=169.26  Aligned_cols=235  Identities=17%  Similarity=0.207  Sum_probs=178.4

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      +...+.|..++.+++|.+..  -+++|+.||.|+.+|+..           .....+..|...|.+|.+++-.. .+++|
T Consensus        47 l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~-----------~~~~~igth~~~i~ci~~~~~~~-~vIsg  112 (323)
T KOG1036|consen   47 LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNT-----------GNEDQIGTHDEGIRCIEYSYEVG-CVISG  112 (323)
T ss_pred             hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecC-----------CcceeeccCCCceEEEEeeccCC-eEEEc
Confidence            45567899999999999855  589999999999999997           33456778999999999998554 79999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +.|++|++||.+.......      +. ....|.++...  +. .|++|+.+..+.+||+|+..... ...-...+-.++
T Consensus       113 sWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR  181 (323)
T KOG1036|consen  113 SWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPF-QRRESSLKYQTR  181 (323)
T ss_pred             ccCccEEEEeccccccccc------cc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchh-hhccccceeEEE
Confidence            9999999999986422222      11 23478888765  33 45688999999999999866421 111123455789


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCC---CCcceEecCCC---------CCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHK---------EEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~h~---------~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      ||++.|++.- +++++-||.|.+=.+...   ......|+.|.         .+|++++|+|-.. .||||+.||.|.+|
T Consensus       182 ~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~W  259 (323)
T KOG1036|consen  182 CVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIW  259 (323)
T ss_pred             EEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEc
Confidence            9999997774 788999999888666542   13345566664         3799999999875 69999999999999


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      |+.+.+              .+..+......|..++|+.+|. +||.++
T Consensus       260 d~~~rK--------------rl~q~~~~~~SI~slsfs~dG~-~LAia~  293 (323)
T KOG1036|consen  260 DLFNRK--------------RLKQLAKYETSISSLSFSMDGS-LLAIAS  293 (323)
T ss_pred             cCcchh--------------hhhhccCCCCceEEEEeccCCC-eEEEEe
Confidence            998753              2444445556799999999999 677765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.7e-25  Score=203.59  Aligned_cols=225  Identities=23%  Similarity=0.454  Sum_probs=191.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      +++.....-.+++|+...                +..|...+.++..-..+. .+++|+.|-.+.+|.+....      +
T Consensus         6 ~~m~~~~~t~Lr~~~~~~----------------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~------~   62 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTRE----------------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPN------A   62 (825)
T ss_pred             ccceeeeeeccccccchh----------------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCc------h
Confidence            344444555677887665                446888888888755455 79999999999999986552      3


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                      +..+.+|..+|.++.|++... ++++|+.+|+|++||+...+.   ++++.+|...+.+++|+|.+. ++|.|+.|+.++
T Consensus        63 i~S~~~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~  137 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLK  137 (825)
T ss_pred             hheeeccCCcceeeecCcchh-hhcccccCCceeeeehhhhhh---hhhhhccccCcceeeeccceE-Eeccccccccce
Confidence            445789999999999999864 788999999999999998664   778889999999999999998 479999999999


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      +||.|. ..+.+.+.+|...|..++|+|+|. +++.++.|..++|||+..+              .++..+.+|...+..
T Consensus       138 iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag--------------k~~~ef~~~e~~v~s  201 (825)
T KOG0267|consen  138 IWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG--------------KLSKEFKSHEGKVQS  201 (825)
T ss_pred             ehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc--------------ccccccccccccccc
Confidence            999997 678999999999999999999996 7999999999999999875              667778899999999


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +.|+|..- ++++||.|+++++||+.+-.+
T Consensus       202 le~hp~e~-Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  202 LEFHPLEV-LLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             cccCchhh-hhccCCCCceeeeeccceeEE
Confidence            99999876 899999999999999996544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=6e-23  Score=191.19  Aligned_cols=264  Identities=17%  Similarity=0.282  Sum_probs=206.3

Q ss_pred             EEEEeccC-CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceEE
Q 014433          118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       118 ~~~~~~h~-~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ++..+.|. +.|+.++|.-||..++|+|+..|.+.+||++.          .+....+ ..|.+.|..+.|.|..+ .++
T Consensus       236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~----------kkl~~v~~nah~~sv~~~~fl~~ep-Vl~  304 (910)
T KOG1539|consen  236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK----------KKLINVTRNAHYGSVTGATFLPGEP-VLV  304 (910)
T ss_pred             EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC----------CeeeeeeeccccCCcccceecCCCc-eEe
Confidence            45567786 99999999999999999999999999999997          2223333 36888888888888655 788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCc---------------------------------c-------------------------
Q 014433          196 SGSDDAQICLWDINAAPKNKS---------------------------------L-------------------------  217 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~---------------------------------~-------------------------  217 (424)
                      +++.|..+++|=.+++.....                                 +                         
T Consensus       305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk  384 (910)
T KOG1539|consen  305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK  384 (910)
T ss_pred             eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence            888888888875542211000                                 0                         


Q ss_pred             -------------------------------------cce------------ee-----eecCCccEeeEEEecCCCcEE
Q 014433          218 -------------------------------------EAM------------QI-----FKVHEGVVEDVAWHLRHEYLF  243 (424)
Q Consensus       218 -------------------------------------~~~------------~~-----~~~~~~~v~~~~~~~~~~~~~  243 (424)
                                                           ...            ..     ++.....+++++.++.|+..|
T Consensus       385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~  464 (910)
T KOG1539|consen  385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF  464 (910)
T ss_pred             ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence                                                 000            00     111224678888888887554


Q ss_pred             EEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE
Q 014433          244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV  323 (424)
Q Consensus       244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~  323 (424)
                       .|+..|.|-+|++.++-.......-.+|..+|+.++.+..++ ++++++.+|.+++||..+ +.++..+.. ...+..+
T Consensus       465 -IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~-k~l~~~l~l-~~~~~~i  540 (910)
T KOG1539|consen  465 -IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKK-KVLKKSLRL-GSSITGI  540 (910)
T ss_pred             -EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCC-cceeeeecc-CCCccee
Confidence             888999999999999875444433468999999999998887 799999999999999998 566666664 5678888


Q ss_pred             EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      ..+.... ++|.+..|-.|+++|+.+.              ..++.+.||.+.|++++|||+|+| |++++.|++|++||
T Consensus       541 v~hr~s~-l~a~~~ddf~I~vvD~~t~--------------kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wD  604 (910)
T KOG1539|consen  541 VYHRVSD-LLAIALDDFSIRVVDVVTR--------------KVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWD  604 (910)
T ss_pred             eeeehhh-hhhhhcCceeEEEEEchhh--------------hhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEe
Confidence            8887774 7999999999999999874              567788999999999999999996 88889999999999


Q ss_pred             cCCccCCCC
Q 014433          404 MAENIYHDE  412 (424)
Q Consensus       404 ~~~~~~~~~  412 (424)
                      +.++.+-+.
T Consensus       605 lpt~~lID~  613 (910)
T KOG1539|consen  605 LPTGTLIDG  613 (910)
T ss_pred             ccCcceeee
Confidence            999876543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=2.9e-23  Score=187.93  Aligned_cols=256  Identities=18%  Similarity=0.289  Sum_probs=181.9

Q ss_pred             EEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          130 RARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       130 ~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      +..|++  ...++||.+..+|.|.++|.....-..    +.........|...|..+.|.| +...|++++.|.++++||
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~----ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL----EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWD  128 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcch----hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeee
Confidence            355554  566799999999999999987632221    1122345667999999999999 776899999999999999


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC------------------------
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------------  263 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------------  263 (424)
                      +++....    -...+.+|...|.+++|.|.++.+|++|+.||.|.|||+|.....                        
T Consensus       129 vk~s~l~----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  129 VKTSRLV----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eccceee----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9877442    233477899999999999999999999999999999999854310                        


Q ss_pred             CCeeeeeccCCCeeE---EEecCCCCeEEEEEeC-CCcEEEEECCCCCC-----cc--eEecCC---CCCEEEEEEcCCC
Q 014433          264 KPVQSVVAHQSEVNC---LAFNPFNEWILATGST-DKTVKLFDLRKIST-----AL--HTFDSH---KEEVFQVGWNPKN  329 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~---v~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~-----~~--~~~~~h---~~~v~~~~~sp~~  329 (424)
                      +.+....++...|.+   +.+..|.. .||+++. |+.|+|||+|+...     +.  ..+..|   ...++++.....|
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence            011122334444444   34445555 5777776 99999999997432     22  223333   3467888888888


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC--cceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK--ISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .+++|+|. |+.|++|++.....            ..++.+.++...  -..-..+|++. .|++|+.|...++|.++.-
T Consensus       284 t~L~AsCt-D~sIy~ynm~s~s~------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  284 TYLFASCT-DNSIYFYNMRSLSI------------SPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             CeEEEEec-CCcEEEEeccccCc------------CchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence            76665555 99999999987542            333444444321  12234689999 5999999999999999875


Q ss_pred             cC
Q 014433          408 IY  409 (424)
Q Consensus       408 ~~  409 (424)
                      ..
T Consensus       350 e~  351 (720)
T KOG0321|consen  350 EA  351 (720)
T ss_pred             cC
Confidence            43

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.2e-22  Score=166.82  Aligned_cols=239  Identities=15%  Similarity=0.205  Sum_probs=181.0

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceEEEE
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSG  197 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~  197 (424)
                      .....|.++|.+++|+.+|. .+++|+.|+.+++||+.+           .....+..|.++|.++.|-+... ..|++|
T Consensus        66 ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S-----------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS-----------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC-----------CCeeeeeecccceeEEEEecCCCcceeEec
Confidence            34567999999999999996 788899999999999998           23567788999999999987433 268999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      |.|.+|+.||++....      +..+. -...+.++..-  .+ +++++..++.|.+|+++.+........ ...+-.++
T Consensus       134 SWDKTlKfWD~R~~~p------v~t~~-LPeRvYa~Dv~--~p-m~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R  202 (347)
T KOG0647|consen  134 SWDKTLKFWDTRSSNP------VATLQ-LPERVYAADVL--YP-MAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTR  202 (347)
T ss_pred             ccccceeecccCCCCe------eeeee-ccceeeehhcc--Cc-eeEEEecCCcEEEEEcCCCcchhhhhc-Ccccceee
Confidence            9999999999986643      22222 34566666543  23 566888899999999987543111111 12344688


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCCCC---------CEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHKE---------EVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~~---------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      ||+..++... .|.|+-.|.+.|..+... ...-.+|+.|..         +|++|+|+|... .|+|++.||++.+||-
T Consensus       203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK  280 (347)
T ss_pred             EEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence            9999988884 799999999999988762 134456666652         589999999875 6999999999999998


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      ...              ..+.....|..+|++.+|+.+|..+....|.|
T Consensus       281 dar--------------~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  281 DAR--------------TKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             hhh--------------hhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            764              33555677889999999999999655555544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.7e-22  Score=166.67  Aligned_cols=272  Identities=15%  Similarity=0.216  Sum_probs=185.6

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ...+|.+.|++++|+.+|+ .|||++.|+.|+||++..-.....     +.+ ...-.-+-.+.+.|.|+-...++++-.
T Consensus        81 ~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~-R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEH-----RCI-RQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhh-----hHh-hccccCCCceEEEECCCcceEEEEEcc
Confidence            3457999999999999997 799999999999999986222111     000 011111235789999998877888888


Q ss_pred             CCcEEEEeCCCCCCCC-cc-----cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          200 DAQICLWDINAAPKNK-SL-----EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~-~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      ..++++|.+....... ++     .....-+.|...+..+-....+ .++++++.|..|.+|+++ ++.   +..+....
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~---L~~idtnq  228 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL---LQSIDTNQ  228 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce---eeeecccc
Confidence            8899999876543221 11     1111123355566666655544 467799999999999999 443   55555556


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--C-----CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--S-----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~-----~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      ..-+..+.+|+|+ ++|+++..-.|++|.+--.  +     ..+..+.+|++.|..++|+++.. .+++.+.||+++|||
T Consensus       229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWD  306 (420)
T ss_pred             ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEee
Confidence            6677788999998 5788888888999986321  1     34667889999999999999996 589999999999999


Q ss_pred             CCCCCc----ccCC-------CCcCCCCCee--------eE--------EE------------cCCCCCcceEEeCCCCC
Q 014433          347 LSRIDE----EQTP-------EDAEDGPPEL--------LF--------IH------------GGHTSKISDFSWNPCED  387 (424)
Q Consensus       347 ~~~~~~----~~~~-------~~~~~~~~~~--------~~--------~~------------~~h~~~v~~~~~~~~~~  387 (424)
                      +...-.    +..+       ......|.++        +.        .+            ..|...|.+++|+++|+
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK  386 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence            864311    1000       0000001000        00        00            13777899999999999


Q ss_pred             cEEEEEeCCCcEEEEecCCc
Q 014433          388 WVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~~~  407 (424)
                       .++|+| |..+++..-..+
T Consensus       387 -~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  387 -YIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             -EEeeec-ceeeeeecCCCc
Confidence             478876 778888764433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7e-23  Score=172.54  Aligned_cols=248  Identities=21%  Similarity=0.356  Sum_probs=185.4

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC-CCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSL  217 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  217 (424)
                      ..+|++.++|.|++||..+          ......++++...+..+.|... +++.+.+|+.||+|++||++......  
T Consensus        41 ~~vav~lSngsv~lyd~~t----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a--  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA--  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--
Confidence            4799999999999999987          5567788999999999999875 66679999999999999999875532  


Q ss_pred             cceeeeecCC-ccEeeEEEecCCCcEEEEEe----CCCeEEEEEcCCCCCCCCeee-eeccCCCeeEEEecCCCCeEEEE
Q 014433          218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCLAFNPFNEWILAT  291 (424)
Q Consensus       218 ~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~----~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~t  291 (424)
                        ...+..++ .+..+++.+..+ +++++|.    .+-.|.+||+|..+.  ++.. ...|...|+++.|+|..+.+|++
T Consensus       109 --~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlS  183 (376)
T KOG1188|consen  109 --RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLS  183 (376)
T ss_pred             --heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEe
Confidence              22344444 456666665444 5777764    467899999998764  2332 35799999999999999999999


Q ss_pred             EeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC---------
Q 014433          292 GSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE---------  360 (424)
Q Consensus       292 g~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------  360 (424)
                      |+.||.|.|||+....  ..+.....|...|.++.|...+-.-+.+-+......+|+++.+.+......+.         
T Consensus       184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~  263 (376)
T KOG1188|consen  184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE  263 (376)
T ss_pred             ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence            9999999999998642  23444455788899999998873347778888899999999876543222110         


Q ss_pred             ----------------------C-CCCeee---------------EEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433          361 ----------------------D-GPPELL---------------FIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQI  401 (424)
Q Consensus       361 ----------------------~-~~~~~~---------------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v  401 (424)
                                            . .....+               ..+ .+|...|.++.|...+. ++.|||+||.+++
T Consensus       264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~  342 (376)
T KOG1188|consen  264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQA  342 (376)
T ss_pred             hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEE
Confidence                                  0 000011               111 23666788888887777 8999999999999


Q ss_pred             Eec
Q 014433          402 WQM  404 (424)
Q Consensus       402 w~~  404 (424)
                      |..
T Consensus       343 Wk~  345 (376)
T KOG1188|consen  343 WKV  345 (376)
T ss_pred             Eec
Confidence            996

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=180.46  Aligned_cols=221  Identities=16%  Similarity=0.250  Sum_probs=179.5

Q ss_pred             CcEEEecCCCceeEEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          170 PDLRLRGHSTEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .....+-+...|++++|+|... .++++|+.-|.|-+||+.+...  ....+..+..|..+|.+|.|+|.+...+.+.+.
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecCCChhheeeecc
Confidence            3445667889999999999876 6899999999999999964322  223456678899999999999998888889999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      ||+|++-|+..... ..+.........+..+.|+..... ++.|..=|...+||+|..+.....+..|...|.+++++|.
T Consensus       256 DGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  256 DGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             Cceeeeeeecchhh-HHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            99999999987542 223333334556778889887775 5566666799999999987778888889999999999999


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .+++|||++.|++++|||++......+          .+...-.|...|.++.|+|.+-. |+|.+.|+.|+|||.+
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence            999999999999999999998654321          13344578889999999999884 8888999999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1e-21  Score=173.44  Aligned_cols=240  Identities=16%  Similarity=0.262  Sum_probs=187.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..|.|++|.+++.  ++||.++|.|.||+...          .+.......|.+.|.+|+...+|.  |++|+.|+.|..
T Consensus       247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~----------~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~  312 (626)
T KOG2106|consen  247 KFVLCVTFLENGD--VITGDSGGNILIWSKGT----------NRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIIL  312 (626)
T ss_pred             eEEEEEEEcCCCC--EEeecCCceEEEEeCCC----------ceEEeEeeecCCceEEEEEecCcc--EeecCccceEEe
Confidence            6899999999886  88999999999999876          344455559999999999998776  888999999999


Q ss_pred             EeCCCCCCCCcc-----------------------------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          206 WDINAAPKNKSL-----------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       206 wd~~~~~~~~~~-----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      ||-+-.+. ...                                   .......+|....+.++.+|+.+ ++++++.|+
T Consensus       313 Wd~~y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk  390 (626)
T KOG2106|consen  313 WDDNYRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDK  390 (626)
T ss_pred             cccccccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcc
Confidence            99332211 000                                   11223456888999999999876 456999999


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                      .+++|+  ..+   +.- .+.-..++.|++|+|.|  .+|.|+..|...+.|..+ ...+..... +.+++.++|+|+|.
T Consensus       391 ~v~lW~--~~k---~~w-t~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~  460 (626)
T KOG2106|consen  391 HVRLWN--DHK---LEW-TKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA  460 (626)
T ss_pred             eEEEcc--CCc---eeE-EEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC
Confidence            999999  222   122 22346789999999988  699999999999999998 455544444 89999999999996


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                       +||.|+.|+.|+||.+.....            .....-..|.++|+.+.|++|++ ++.+-+.|-.|..|...
T Consensus       461 -~lAvgs~d~~iyiy~Vs~~g~------------~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  461 -FLAVGSHDNHIYIYRVSANGR------------KYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWKPS  521 (626)
T ss_pred             -EEEEecCCCeEEEEEECCCCc------------EEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEccc
Confidence             899999999999999987543            22222223348899999999999 58888999999999443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=6.5e-22  Score=165.52  Aligned_cols=250  Identities=18%  Similarity=0.248  Sum_probs=185.0

Q ss_pred             EEEEEEeccCCceeEEEecC------CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc---eeEEEe
Q 014433          116 VQIIQQINHDGEVNRARYMP------QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE---GYGLSW  186 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p------~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~  186 (424)
                      .+..-+....+.|...+|-+      -...++|+.+.+.-|++||.-+        +..+.......|..+   ..+|+|
T Consensus        95 ~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft--------G~lraSy~~ydh~de~taAhsL~F  166 (406)
T KOG2919|consen   95 KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT--------GKLRASYRAYDHQDEYTAAHSLQF  166 (406)
T ss_pred             cceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc--------cccccchhhhhhHHhhhhheeEEe
Confidence            33444556677888888863      1345899999999999999988        333333333345543   468999


Q ss_pred             cCCCCceEEEEeCCCcEEEEeCCCCCCCC-cccceee-eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          187 SKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      +|+|. .|++| ....|+++|+....+.. ....+.. -.+..+-+.+++|+|....+++.|+....+-||.-....   
T Consensus       167 s~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---  241 (406)
T KOG2919|consen  167 SPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---  241 (406)
T ss_pred             cCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---
Confidence            99999 46655 45899999995433322 1111111 223467899999999998889999988888888766644   


Q ss_pred             CeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCCCCcceEecCCCC-CEEEEEE--cCCCCcEEEEEECCC
Q 014433          265 PVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKISTALHTFDSHKE-EVFQVGW--NPKNETILASCCLGR  340 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~--sp~~~~~l~s~~~dg  340 (424)
                      ++..+.+|.+.|+.+.|+++|.. |.+|. .|-.|..||+|....++..+..|.. .=..|-|  .|.++ +|++|+.||
T Consensus       242 pl~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG  319 (406)
T KOG2919|consen  242 PLQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDG  319 (406)
T ss_pred             ceeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCc
Confidence            68888899999999999999996 55555 5779999999998889888888765 3344444  57785 899999999


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      .|++||+....             .....+..|...++.++++|--+ ++++++
T Consensus       320 ~V~vwdlk~~g-------------n~~sv~~~~sd~vNgvslnP~mp-ilatss  359 (406)
T KOG2919|consen  320 SVRVWDLKDLG-------------NEVSVTGNYSDTVNGVSLNPIMP-ILATSS  359 (406)
T ss_pred             cEEEEecCCCC-------------CcccccccccccccceecCcccc-eeeecc
Confidence            99999998743             22344567788899999999988 777765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=4.4e-23  Score=181.54  Aligned_cols=214  Identities=16%  Similarity=0.264  Sum_probs=180.2

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      .++++|+..+.|+|||+..          ......+++|...|+++.++-... +||+++..|.|.|..+.++.....+.
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~----------kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRA----------KLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             eeeeccCcCceeeehhhHH----------HHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcccccee
Confidence            4899999999999999986          345567889999999999998777 89999999999999998876543332


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                           ......|.-+.|++..++++.+++.+|.|.+||+.....  .......|..+...|+|+|.++.+|++.+.|..|
T Consensus       161 -----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki  233 (673)
T KOG4378|consen  161 -----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI  233 (673)
T ss_pred             -----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCccceEEEecccceE
Confidence                 122456779999999999999999999999999987553  2334467999999999999999999999999999


Q ss_pred             EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      .+||.+. ......+.. ..+.+.++|+++| .+|++|...|.|..||++...             ..+.+...|...|+
T Consensus       234 ~~yD~~s-~~s~~~l~y-~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-------------~Pv~v~sah~~sVt  297 (673)
T KOG4378|consen  234 NIYDIRS-QASTDRLTY-SHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-------------APVAVRSAHDASVT  297 (673)
T ss_pred             EEeeccc-ccccceeee-cCCcceeeecCCc-eEEEeecCCceEEEEecccCC-------------CCceEeeeccccee
Confidence            9999997 455545443 6789999999999 589999999999999999753             56777888999999


Q ss_pred             eEEeCCCC
Q 014433          379 DFSWNPCE  386 (424)
Q Consensus       379 ~~~~~~~~  386 (424)
                      +++|.|..
T Consensus       298 ~vafq~s~  305 (673)
T KOG4378|consen  298 RVAFQPSP  305 (673)
T ss_pred             EEEeeecc
Confidence            99998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1e-21  Score=171.56  Aligned_cols=248  Identities=17%  Similarity=0.252  Sum_probs=188.8

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      -..+|.+.+|.|+|...+++++.....+.||+.+        .....+..+.++. ..+.....+++++ +|+..+..|.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--------ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~  326 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--------AKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGH  326 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccc--------cccccccCCCCcccchhheeEecCCCC-eEEEcccCce
Confidence            4568999999999987889999999999999987        3334444445554 3456677889888 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~v~~  281 (424)
                      |.+....++....+      ++ ..+.|.+++|+.++..++ +++.+|.|.+||++...+   ++.+... .-.-++++.
T Consensus       327 I~lLhakT~eli~s------~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~  395 (514)
T KOG2055|consen  327 IHLLHAKTKELITS------FK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCI  395 (514)
T ss_pred             EEeehhhhhhhhhe------ee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcce---EEEEeecCccceeeeee
Confidence            99998877644333      22 467899999999997666 566789999999999764   5555332 223467888


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCC-----CCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCeEEEeeCCCCCccc
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRK-----ISTALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~  354 (424)
                      ++++. +||+|+..|.|.|||..+     ..+|+..+..-...|++++|+|+.+ +||.+|.  +..+++-.+.+.....
T Consensus       396 S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs  473 (514)
T KOG2055|consen  396 SLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS  473 (514)
T ss_pred             cCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec
Confidence            88888 699999999999999653     2467888877788999999999995 7887775  5678888876532211


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                            ++|..     ....+.|++++|+|.+. +++.|..+|.+.+|.+.
T Consensus       474 ------NfP~~-----n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  474 ------NFPTS-----NTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ------cCCCC-----CCcccceEEEEecCCCc-eEEeecCCCceeeEeec
Confidence                  11111     12345689999999998 69999999999999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=8.4e-23  Score=184.82  Aligned_cols=121  Identities=24%  Similarity=0.435  Sum_probs=105.5

Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      ..|+.+.|+|.....||+++.||.|++|.+...+      .+-..+..|...|+++.|+|-...+|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            3478888998877779999999999999987533      4567788999999999999987779999999999999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ++.              .....+.||...|.+++|+|+|+ .+++.+.||+|+||+...+.-
T Consensus       708 ~~~--------------~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  708 ANA--------------KLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hhh--------------hhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCC
Confidence            986              34556789999999999999999 799999999999999987643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=5.4e-22  Score=166.01  Aligned_cols=259  Identities=18%  Similarity=0.350  Sum_probs=185.5

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC--CCCCCCCcEEEe-cCCCceeEEEecCC------CCceEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--LDGACSPDLRLR-GHSTEGYGLSWSKF------KEGHLLS  196 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~-~h~~~v~~l~~~~~------~~~~l~s  196 (424)
                      .-...+.|+|+|. .|.+-+.|..+++|++........  ..........++ .....|+..+|-+.      ...++++
T Consensus        50 nf~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~  128 (406)
T KOG2919|consen   50 NFLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV  128 (406)
T ss_pred             hhhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence            3455789999998 566678899999999875321111  000111111222 13456888888532      2347999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCc---cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee---
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---  270 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~---  270 (424)
                      .+.+.-|++||.-+++...+....    .|..   ...+++|+|+|.++|  ++....|++||+..+....+.....   
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~y----dh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAY----DHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             ccccCceeeeeccccccccchhhh----hhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcc
Confidence            999999999999988654443321    1322   356899999999876  4578999999994433223333322   


Q ss_pred             --ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          271 --AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       271 --~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                        +..+.+.|++|+|....++|.|+...++-||.-.. ..|+..+.+|.+.|+.+.|.++|..++.-+-.|..|..||++
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence              23678999999999888999999999999998776 788999999999999999999998644444448889999999


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCC-C--cceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTS-K--ISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ...             ..+..+..|.. .  -.-+...|+++ +|++|+.||.|++||+++
T Consensus       282 ~~~-------------~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  282 YSR-------------DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hcc-------------chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence            854             44555556654 2  22355678899 799999999999999987

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.2e-22  Score=180.99  Aligned_cols=261  Identities=18%  Similarity=0.291  Sum_probs=181.0

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .-..+|.+.|.+|...|.|. .||+|+.||+|+||.+.+          ..++.++. ..+.|.+|+|+|.+...+++++
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~T----------gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIAT----------GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             eeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeec----------ceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence            34458999999999999876 899999999999999998          45555554 4568999999998765555555


Q ss_pred             CCCcEEEEeCCCCCCC----------------C------cc---------cceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          199 DDAQICLWDINAAPKN----------------K------SL---------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~----------------~------~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      ....+.|-+..-+...                .      .+         ..+...-.|...|..+.||..|.++..+..
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            5555666554322100                0      00         001222235555666666665554322211


Q ss_pred             -------------------------------------------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          248 -------------------------------------------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       248 -------------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                                                                 ....|+|||+.....   +..+......|.+++.+|.
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhcCCeeeeeeeecCC
Confidence                                                       123344444443222   1222233456889999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP  364 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  364 (424)
                      |.+ |+.|+.|+.+..||+.-..++.+++..|...+++++|++.-+ +|++|+.||++.||.-..-....     .+.-.
T Consensus       619 GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~-----qnpli  691 (733)
T KOG0650|consen  619 GDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLL-----QNPLI  691 (733)
T ss_pred             CCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhh-----cCCce
Confidence            997 778999999999999987789999999999999999999986 89999999999998654322110     01112


Q ss_pred             eeeEEEcCCCCC----cceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          365 ELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       365 ~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      ..+..+.||...    |.++.|||..+| |+++|.||+|++|
T Consensus       692 VPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  692 VPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            345677888765    889999999996 6777889999998

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.4e-21  Score=176.83  Aligned_cols=246  Identities=18%  Similarity=0.269  Sum_probs=195.1

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .+.+|.++||+.+.. .||.+-.+|.|.||++..         .+.....+.++. ..|-+|+|++.+  .|++.+.+|.
T Consensus        24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~---------~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~   91 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSN---------NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGS   91 (691)
T ss_pred             eccceEEEEEeccCC-ceeeeccCCcEEEEccCC---------CceeeEEEecCCCCceeeEEEccCC--eEEeecCCce
Confidence            578999999999775 699999999999999986         245555666654 579999999644  5999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |.-||+.+.      ++...+....+.|++++.+|.+. .++.|++||.+..++...+.. .....+...++.|.+++|+
T Consensus        92 i~EwDl~~l------k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I-~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   92 ITEWDLHTL------KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKI-TYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             EEEEecccC------ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceE-EEEeecccccceEEEEEec
Confidence            999999766      34555666789999999999886 567899999777777766542 2222334456899999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEe-----cC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTF-----DS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      |++.. +++|+.||.|++||..+ +..++..     ..   ...-|+++.|-.++  .+++|..-|+|.+||...+    
T Consensus       164 ~~~~~-i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~g----  235 (691)
T KOG2048|consen  164 PTGTK-IAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFG----  235 (691)
T ss_pred             CCccE-EEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCc----
Confidence            99974 99999999999999998 4433311     11   22347888888666  5999999999999999876    


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                                .++..+..|.+.|.+++..+++. .++++|.|+.|.-+...++.
T Consensus       236 ----------TLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  236 ----------TLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             ----------chhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCc
Confidence                      55667788899999999999988 58888999999999888773

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.7e-22  Score=178.19  Aligned_cols=241  Identities=17%  Similarity=0.277  Sum_probs=196.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .-...|.++...|+++ -|++|+.-.++.|||+...        .......+....-.+++|+.+|+.+ +.+++..||.
T Consensus       463 ~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAap--------TprikaeltssapaCyALa~spDak-vcFsccsdGn  532 (705)
T KOG0639|consen  463 NRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAP--------TPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGN  532 (705)
T ss_pred             CcccceeeeEecCCCc-eEEeccccceeeeeeccCC--------CcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCc
Confidence            3456788999999997 5777888999999999872        1222233444445678999999887 7899999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |.|||+...      ..++.+++|.+.+.||..+++|..+. +|+-|.+|+.||+|.+..   +.. ....+.|.++.++
T Consensus       533 I~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrq---lqq-hdF~SQIfSLg~c  601 (705)
T KOG0639|consen  533 IAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQ---LQQ-HDFSSQIFSLGYC  601 (705)
T ss_pred             EEEEEcccc------eeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhh---hhh-hhhhhhheecccC
Confidence            999999865      35778899999999999999998776 999999999999999764   222 1246789999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      |.+.+ +|.|-.++.+-|...+.  .....+..|.+-|.++.|.+.|+ ++++.+.|+.+..|....+.           
T Consensus       602 P~~dW-lavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGa-----------  666 (705)
T KOG0639|consen  602 PTGDW-LAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA-----------  666 (705)
T ss_pred             CCccc-eeeecccCcEEEEecCC--ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcccc-----------
Confidence            99995 99999999998888774  45567778999999999999997 68899999999999987753           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                         .+|... ..+.|.++..+.+.+ +|+||+.|....||.+
T Consensus       667 ---siFqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  667 ---SIFQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---ceeecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence               344433 356799999999999 6999999999998875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.5e-22  Score=164.83  Aligned_cols=228  Identities=17%  Similarity=0.265  Sum_probs=173.2

Q ss_pred             EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (424)
Q Consensus       173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  252 (424)
                      .+++|...|++++|+.+|+ .|++++.|++|++|+++.-... .-++++.-- .-+..+.+.|.|+-+.+++++....++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENK-EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhh-hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence            4889999999999999998 7999999999999999864221 111111111 123567899999999888888888899


Q ss_pred             EEEEcCCCCCCC-C--------eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE
Q 014433          253 LIWDLRTPSVSK-P--------VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV  323 (424)
Q Consensus       253 ~i~d~~~~~~~~-~--------~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~  323 (424)
                      ++|.+...+... +        ......|...+..+-....+. +|++++.|..|.+|+++  ++.+..+......-+..
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeeccccccccce
Confidence            999875432211 1        111134566777777766555 79999999999999999  68888888888888899


Q ss_pred             EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +.||+|+ ++++++.---|++|.+-..+.-...      .....+.+.||.+.|..++|+++.+ .++|.+.||.++|||
T Consensus       235 avSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  235 AVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWD  306 (420)
T ss_pred             eeCCCCc-EEEEecCCCCceEEEEEeccCcchh------hhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEee
Confidence            9999996 7888888888999998554321111      1245678899999999999999999 699999999999999


Q ss_pred             cCCccCCCCCC
Q 014433          404 MAENIYHDEDD  414 (424)
Q Consensus       404 ~~~~~~~~~~~  414 (424)
                      ..-.+-..++.
T Consensus       307 tdVrY~~~qDp  317 (420)
T KOG2096|consen  307 TDVRYEAGQDP  317 (420)
T ss_pred             ccceEecCCCc
Confidence            98765544443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.8e-21  Score=158.96  Aligned_cols=207  Identities=17%  Similarity=0.264  Sum_probs=163.2

Q ss_pred             EEEEEeccCCceeEEEecCCCC-cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~-~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ++-..+.|.+.|+++.|.+.-. ..|++|+.||.|.+|+...          +.....+++|.+.|+.|+.+|.++ +-+
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS~K-LAL  143 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHPSGK-LAL  143 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----------eEEeeeecccccccceeEecCCCc-eEE
Confidence            3344567999999999998542 3588899999999999987          888899999999999999999988 788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +.+.|+.+++||+-.++....+.       -....+.+.|+|.|.+++ .++. ..|-+|.+........+    .....
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~-------L~~~at~v~w~~~Gd~F~-v~~~-~~i~i~q~d~A~v~~~i----~~~~r  210 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLN-------LKNKATLVSWSPQGDHFV-VSGR-NKIDIYQLDNASVFREI----ENPKR  210 (362)
T ss_pred             EEcCCceeeeehhhcCccceeec-------cCCcceeeEEcCCCCEEE-EEec-cEEEEEecccHhHhhhh----hcccc
Confidence            89999999999998875432221       122334499999998654 4443 56889998876542222    22355


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN--PKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +.|+.|... . .|++|+.|+.|.+||... ..+...+.+|..+|-.+.+-  |.+ .+|++++.||.|+|||++...
T Consensus       211 ~l~~~~l~~-~-~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  211 ILCATFLDG-S-ELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             ceeeeecCC-c-eEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence            777877653 3 588999999999999998 78999999999999999853  445 589999999999999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-21  Score=166.50  Aligned_cols=273  Identities=15%  Similarity=0.193  Sum_probs=197.3

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEE
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ....+|.+.|++|.|+.+++ +||+|+.|..++||++...-..    ...+|+.... .|...|.||+|...+. .+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~----k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG  123 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVR----KTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSG  123 (609)
T ss_pred             hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhh----cCCCCceeccCccccceEEEEEccCCe-eEecC
Confidence            34568999999999999875 9999999999999998752110    1124443333 3568999999998555 79999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      ..+++|...|+++.+.      +..+.  ...+.|..+..+|.. ++|++.+.++.|.+||.|.......+.........
T Consensus       124 ~~~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~  196 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN  196 (609)
T ss_pred             CCcceeEeeeccccee------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence            9999999999987643      22222  234589999999995 57789999999999999986532223333345667


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-------------------------------------cC---
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------------------------------------DS---  315 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------------------------------------~~---  315 (424)
                      ..++.|+|..+.+|++.+..+-+.+||.|....++...                                     ..   
T Consensus       197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~  276 (609)
T KOG4227|consen  197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ  276 (609)
T ss_pred             ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence            88999999999999999999999999998754321111                                     00   


Q ss_pred             --------CC-------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC----CcCCCC-----CeeeEEEc
Q 014433          316 --------HK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE----DAEDGP-----PELLFIHG  371 (424)
Q Consensus       316 --------h~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~-----~~~~~~~~  371 (424)
                              |+       ..+.+++|..+.  -+++|+.+-.|++|.+........+.    +.+.-|     ...+.+++
T Consensus       277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr  354 (609)
T KOG4227|consen  277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR  354 (609)
T ss_pred             cceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence                    11       134455555443  37899999999999987654332211    111111     23467789


Q ss_pred             CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ||.+.++.+.|+|... +|++.+..+.++||..-..
T Consensus       355 GHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r~  389 (609)
T KOG4227|consen  355 GHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHRL  389 (609)
T ss_pred             cccccccceeecCCcc-eEeccchhhheeccccccC
Confidence            9999999999999877 8999999999999987554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=6e-21  Score=174.59  Aligned_cols=260  Identities=18%  Similarity=0.344  Sum_probs=198.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCceeEEEecCCCCceEEEEe
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ++|.+-|+++.|+|.+. .|.+++.|.++.+|...+.      .+.+.....+.   +.....++..|+|++. .+++-+
T Consensus       264 ~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g  335 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDEN------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHG  335 (764)
T ss_pred             cCcccceEEEEEccchh-hheecccCcceEEEecCCc------cceEEEEEEeecccccccceeeEEEcCCCC-EEEEec
Confidence            37999999999999885 5777899999999998761      11222223332   3345578999999886 788889


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---------------
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------------  263 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---------------  263 (424)
                      ..|..++|.....   ..........+|...|.+++|+|.|.+++ +.+.|.+-|+|-.-..+..               
T Consensus       336 ~~Gg~hlWkt~d~---~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~  411 (764)
T KOG1063|consen  336 RTGGFHLWKTKDK---TFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT  411 (764)
T ss_pred             ccCcEEEEeccCc---cceeeccccccccccceeeeecCCCCEEE-Eeccccceeeecccccccceeeecccccccccce
Confidence            9999999983221   23334455778999999999999998665 7888888887633200000               


Q ss_pred             --------------------------------------------------------------------------------
Q 014433          264 --------------------------------------------------------------------------------  263 (424)
Q Consensus       264 --------------------------------------------------------------------------------  263 (424)
                                                                                                      
T Consensus       412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et  491 (764)
T KOG1063|consen  412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET  491 (764)
T ss_pred             eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence                                                                                            


Q ss_pred             ------------------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceEec
Q 014433          264 ------------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHTFD  314 (424)
Q Consensus       264 ------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~  314 (424)
                                              ..++.+.+|.-.|++++.+|++. ++|+++...     .|++|+..+ ...++.+.
T Consensus       492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~-W~~~~~L~  569 (764)
T KOG1063|consen  492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTAN-WLQVQELE  569 (764)
T ss_pred             ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccc-hhhhheec
Confidence                                    11233457888899999999887 799987643     699999988 56677899


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      .|.-.|+.++|||+++ +|++.+.|.++.+|.........          .-....+.|+.-|++..|+|++.+ ++|+|
T Consensus       570 ~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e----------~~fa~~k~HtRIIWdcsW~pde~~-FaTaS  637 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDE----------FRFACLKAHTRIIWDCSWSPDEKY-FATAS  637 (764)
T ss_pred             ccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchh----------hhhccccccceEEEEcccCcccce-eEEec
Confidence            9999999999999996 79999999999999985432110          112336789999999999999996 99999


Q ss_pred             CCCcEEEEecCCc
Q 014433          395 EDNILQIWQMAEN  407 (424)
Q Consensus       395 ~dg~i~vw~~~~~  407 (424)
                      .|.+|+||.....
T Consensus       638 RDK~VkVW~~~~~  650 (764)
T KOG1063|consen  638 RDKKVKVWEEPDL  650 (764)
T ss_pred             CCceEEEEeccCc
Confidence            9999999999887

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-20  Score=156.94  Aligned_cols=235  Identities=17%  Similarity=0.258  Sum_probs=174.9

Q ss_pred             CCcEEEEEEe-ccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433          113 NGKVQIIQQI-NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (424)
Q Consensus       113 ~~~~~~~~~~-~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  190 (424)
                      +++..+.... .|.+.|..+.|.+. -..++|+++.|+++.||.-.....+. ....+....++......|+.+.|.|..
T Consensus        46 s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   46 SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc-ccceeEEEEEeecCCcceeEEEecchh
Confidence            3455555443 59999999999763 23499999999999999975322221 123456667788888999999999975


Q ss_pred             Cc-eEEEEeCCCcEEEEeCCCCCCCCcccceeeee-------cCCccEeeEEEecC--CCcEEEEEeCC-----CeEEEE
Q 014433          191 EG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLR--HEYLFGSVGDD-----QYLLIW  255 (424)
Q Consensus       191 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~~~~s~~~d-----g~i~i~  255 (424)
                      .+ .|++++.||.++||+.-.............++       .+..+..|+.|+|.  ...+||+|+.+     +.++||
T Consensus       125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy  204 (361)
T KOG2445|consen  125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY  204 (361)
T ss_pred             cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence            44 48999999999999876554333332222222       46678899999874  34477777765     478888


Q ss_pred             EcCCCC-CCCCeeeeeccCCCeeEEEecCCCC---eEEEEEeCCCcEEEEECCCCC-------------------CcceE
Q 014433          256 DLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNE---WILATGSTDKTVKLFDLRKIS-------------------TALHT  312 (424)
Q Consensus       256 d~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~---~~l~tg~~dg~i~iwd~~~~~-------------------~~~~~  312 (424)
                      ...... ....+..+..|+.+|+.|+|.|.-.   ++||+++.|| |+||.++...                   +.+..
T Consensus       205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence            776543 3445667778999999999999633   5899999999 9999987311                   12555


Q ss_pred             ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          313 FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       313 ~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +..|++.|.++.|+-.| .+|++.+.||+|++|.....
T Consensus       284 ~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             ccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence            77899999999999999 58999999999999987654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.6e-21  Score=161.41  Aligned_cols=253  Identities=19%  Similarity=0.303  Sum_probs=187.4

Q ss_pred             cCCceeEEEecCC---CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          124 HDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       124 h~~~v~~~~~~p~---~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      |......++|+-+   +.-++|+|+.-|.|+|.|+.+          .+....+.+|..+|+.|.++|..++++++||.|
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence            4555566677542   223788888999999999987          566778999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-----------------
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-----------------  263 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-----------------  263 (424)
                      .+|++|++++..+..   ...-+.+|.+.|.++.|++++. .|++++.|.+|++|++..++..                 
T Consensus       158 ~svRlwnI~~~~Cv~---VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p  233 (385)
T KOG1034|consen  158 HSVRLWNIQTDVCVA---VFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP  233 (385)
T ss_pred             ceEEEEeccCCeEEE---EecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence            999999998874322   2233568999999999999998 5679999999999999843211                 


Q ss_pred             -------CCe-eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceEecCCCCCEEE
Q 014433          264 -------KPV-QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHKEEVFQ  322 (424)
Q Consensus       264 -------~~~-~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------~~~~~~~h~~~v~~  322 (424)
                             -+. .+...|...|-|+.|-  |. ++++-+-++.|..|-.-...+             .+..+......|.-
T Consensus       234 fpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf  310 (385)
T KOG1034|consen  234 FPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF  310 (385)
T ss_pred             CCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence                   001 0223477778888886  45 677888889999998732222             23444444556665


Q ss_pred             EEE--cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          323 VGW--NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       323 ~~~--sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      +.|  .|.++ +||.|...|.|.+||++......          .....+.-....|...+|+.++. +|+...+|++|.
T Consensus       311 irf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~~----------~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  311 IRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPPK----------CTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW  378 (385)
T ss_pred             EEEeecHHHH-HHhhccCCCcEEEEECCCCCCcc----------CceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Confidence            554  56664 79999999999999999864321          11222333356799999999999 677778899999


Q ss_pred             EEecC
Q 014433          401 IWQMA  405 (424)
Q Consensus       401 vw~~~  405 (424)
                      -||..
T Consensus       379 rwdrv  383 (385)
T KOG1034|consen  379 RWDRV  383 (385)
T ss_pred             EEEee
Confidence            99853

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=3.5e-21  Score=165.21  Aligned_cols=217  Identities=20%  Similarity=0.346  Sum_probs=175.0

Q ss_pred             EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCc-ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe
Q 014433          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS-LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (424)
Q Consensus       173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  251 (424)
                      .+.+|+++|..++|+|.+.+.||+||.|.+|.||.+-.+..... ..++..+.+|...|.-++|+|...++|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            46789999999999999998999999999999999976544332 25677789999999999999999999999999999


Q ss_pred             EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC-CEEEEEEcCCCC
Q 014433          252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-EVFQVGWNPKNE  330 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~sp~~~  330 (424)
                      |.+|++.++..   +..+. |...|.++.|+.+|. +|+|++.|..|+|||.|+ +..+..-.+|.+ .-..+.|-.++.
T Consensus       156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             EEEEeccCCce---eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCc
Confidence            99999999875   44554 999999999999998 799999999999999998 777777777765 456777888885


Q ss_pred             cEEEEEE---CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          331 TILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       331 ~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       ++.||-   .+..+.+||..+..+.           ..+..+.. .+.|.---|.++...+.++|-.|+.|+-|.+...
T Consensus       230 -i~tTGfsr~seRq~aLwdp~nl~eP-----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  230 -IFTTGFSRMSERQIALWDPNNLEEP-----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -eeeeccccccccceeccCcccccCc-----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence             555553   3678999998876542           33334433 3345555678888855567778999999999876


Q ss_pred             c
Q 014433          408 I  408 (424)
Q Consensus       408 ~  408 (424)
                      .
T Consensus       297 ~  297 (472)
T KOG0303|consen  297 P  297 (472)
T ss_pred             C
Confidence            4

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=4.8e-21  Score=175.74  Aligned_cols=258  Identities=16%  Similarity=0.238  Sum_probs=191.9

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----------CCceEEEEeC
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----------KEGHLLSGSD  199 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----------~~~~l~s~~~  199 (424)
                      ++.|.|... .+.+--.|..++|||+.....       ......+.-|...|+++.--|-          .+..|++|+.
T Consensus       329 A~~Fdet~~-klscVYndhSlYvWDvrD~~k-------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  329 ACQFDETTD-KLSCVYNDHSLYVWDVRDVNK-------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EEEecCCCc-eEEEEEcCceEEEEecccccc-------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence            577888776 566668899999999987321       2223445568888888876551          1225999999


Q ss_pred             CCcEEEEeCCCCCCCCcc-------------------------------cceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          200 DAQICLWDINAAPKNKSL-------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      |++|++|++........+                               +.....-.....+.+++.+|++.+| |+|..
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL-AsGDr  479 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL-ASGDR  479 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee-cccCc
Confidence            999999999863221110                               0000111123468999999999865 79999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC--CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF--NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s  326 (424)
                      -|.++|||+...+.   ...+.+|...|.|+.|+.-  +..+||+++.|+.|+|||+.....+++++.+|...|+++.|.
T Consensus       480 ~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa  556 (1080)
T KOG1408|consen  480 GGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA  556 (1080)
T ss_pred             cCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence            99999999988553   5667899999999999742  345899999999999999987678888899998888888886


Q ss_pred             CCCC------------------------------------------------cEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          327 PKNE------------------------------------------------TILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       327 p~~~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      ..|-                                                .++++++.|..|+||++.+++..+.   
T Consensus       557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~---  633 (1080)
T KOG1408|consen  557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS---  633 (1080)
T ss_pred             ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee---
Confidence            5541                                                3567888888888888887654322   


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                              ..--++|.+....+...|.|-| |++...|.++.++|+.++.+..
T Consensus       634 --------FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  634 --------FKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             --------ecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhh
Confidence                    2223456677888999999995 7888889999999999987653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-21  Score=171.42  Aligned_cols=246  Identities=17%  Similarity=0.312  Sum_probs=185.7

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      +..+.|+..+...+|+.+.|..|++|.-.....+      ......+.+.  .-.|++...... ++++|+..+.|+|||
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~------Vp~~~k~~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwd  107 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE------VPRVRKLTGD--NAFCVACASQSL-YEISGGQSGCVKIWD  107 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCc------cceeeccccc--hHHHHhhhhcce-eeeccCcCceeeehh
Confidence            7889998766444555567789999987653111      1112222222  334444444344 899999999999999


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                      ++..      .+.+.++.|.+.|+++.++..+. .||+++..|.|.|..+.++....++.  ......|.-+.|+|..++
T Consensus       108 l~~k------l~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~--~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  108 LRAK------LIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFT--IDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             hHHH------HHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcccccee--cCCCCeEEEeecccccce
Confidence            9843      24566788999999999998876 46899999999999999876422222  122445678999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +|.+++++|.|.+||+............|..+...|+|+|..+.+|++.+.|..|.+||++......          .+.
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~  248 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLT  248 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eee
Confidence            9999999999999999985555566678999999999999999999999999999999998642111          111


Q ss_pred             EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                           ...+...++|.++|. .|+.|...|.|..||+...
T Consensus       249 -----y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  249 -----YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             -----ecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence                 234689999999999 5888999999999999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=2.8e-21  Score=159.33  Aligned_cols=213  Identities=23%  Similarity=0.427  Sum_probs=167.3

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +-+.|.|+.|.|++.. +|+- .+..|.+|++........    ..+...-.+|....++-+|+|.....-+....|+++
T Consensus       122 avg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl  195 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL  195 (370)
T ss_pred             HhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEEeCCCcE
Confidence            5579999999998764 5543 388999999987433110    000111122566788899999544445555678999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ..||+++..+...+     -..|...|.++.|+|+-.+++++|++||.|+|||+|..+.  ++..+.+|...|.++.|+|
T Consensus       196 ~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~  268 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSI-----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNP  268 (370)
T ss_pred             EEEEccchhhhcch-----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecC
Confidence            99999977543333     3468889999999999999999999999999999998764  7888999999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCC----------------------------CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          284 FNEWILATGSTDKTVKLFDLRKIS----------------------------TALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~----------------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      ....++++|+.|..|.+|......                            ..+.++..|...|.+++||.-.+.+||+
T Consensus       269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence            888899999999999999754311                            1255778899999999999999999999


Q ss_pred             EECCCeEEEeeCCC
Q 014433          336 CCLGRRLMVWDLSR  349 (424)
Q Consensus       336 ~~~dg~i~iwd~~~  349 (424)
                      -+.||++.|=.+..
T Consensus       349 LSYDGRviIs~V~r  362 (370)
T KOG1007|consen  349 LSYDGRVIISSVPR  362 (370)
T ss_pred             eccCceEEeecCCh
Confidence            99999999876643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=4.7e-21  Score=164.38  Aligned_cols=215  Identities=17%  Similarity=0.295  Sum_probs=171.1

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -+|.++|..++|+|.+.+.||+|+.|.+|.||.+.......   ....+...|.+|...|.-++|+|...+.|++++.|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCccccc---CcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            48999999999999988999999999999999998743333   224678899999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC-CeeEEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~v~  280 (424)
                      +|.+||+.++..      +..+. |.+.|.++.|+.+|. ++++++.|..|+|||.|++..   +....+|.+ .-..+.
T Consensus       155 ~v~iWnv~tgea------li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  155 TVSIWNVGTGEA------LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARAI  223 (472)
T ss_pred             eEEEEeccCCce------eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE---eeecccccCCCcceeE
Confidence            999999998853      22333 999999999999987 667999999999999999875   444456654 344556


Q ss_pred             ecCCCCeEEEEEeC---CCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          281 FNPFNEWILATGST---DKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       281 ~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |-.++. ++.||..   +..+.+||..+..+++..... .++.|.---|.++..-+.++|-.|+.|+-|.+....
T Consensus       224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            767776 5666553   678999999987777543332 245676667788886555666779999999997643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=4.1e-20  Score=159.31  Aligned_cols=292  Identities=22%  Similarity=0.325  Sum_probs=205.3

Q ss_pred             CCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEE
Q 014433           74 ENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYV  152 (424)
Q Consensus        74 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~i  152 (424)
                      ++.++.|++|.+.......                   ...+++....+ .|..+|++++|+|+|. ++|+|+.+|.|.+
T Consensus        32 ~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~l   91 (434)
T KOG1009|consen   32 AGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFL   91 (434)
T ss_pred             ccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEE
Confidence            5577889999985321100                   11456666655 5899999999999997 9999999999999


Q ss_pred             EeCCCCCC------CCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433          153 FDYSKHPS------KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       153 w~~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      |.......      .......+.....+.+|...|+.++|+|++. ++++++.|..+++||+..+.      ....+..|
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~------l~~~~~dh  164 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ------LLAILDDH  164 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce------eEeecccc
Confidence            99773111      0011233555677889999999999999888 79999999999999998874      45667789


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----------------eee---ccCCCeeEEEecCCCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-----------------SVV---AHQSEVNCLAFNPFNE  286 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-----------------~~~---~~~~~v~~v~~~~~~~  286 (424)
                      ...+..++|.|.+.+ +++-+.|...+++.+........+.                 .+.   .-..-...++|+|+|.
T Consensus       165 ~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             ccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            999999999999875 4677888877777665433211111                 000   0112345678999998


Q ss_pred             eEEEEEeC----C-----CcEEEEECCCCCCcceEecCCCCCEEEEEEcCC-----------------CCcEEEEEECCC
Q 014433          287 WILATGST----D-----KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----------------NETILASCCLGR  340 (424)
Q Consensus       287 ~~l~tg~~----d-----g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~-----------------~~~~l~s~~~dg  340 (424)
                       +|++...    .     .+.++|+-....+|+..+.....++..+.|+|-                 .+.++|.++.+ 
T Consensus       244 -llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-  321 (434)
T KOG1009|consen  244 -LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-  321 (434)
T ss_pred             -EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence             6766542    2     345777777777888888887778878777762                 11245555555 


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .|.|||.....             .+...-.-|-..|++++|+++|.. ++..+.||..-+-.+....+
T Consensus       322 svyvydtq~~~-------------P~~~v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  322 SVYVYDTQTLE-------------PLAVVDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eEEEecccccc-------------ceEEEeeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchhc
Confidence            59999987642             223334457788999999999995 55558899888777666544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.4e-19  Score=163.67  Aligned_cols=236  Identities=14%  Similarity=0.115  Sum_probs=163.7

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      .++++++.|+.|++||+.+          ......+..+. .+.+++|+|++..++++++.++.|++||+.++..     
T Consensus         2 ~~~~s~~~d~~v~~~d~~t----------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----   65 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT----------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----   65 (300)
T ss_pred             cEEEEecCCCEEEEEECCC----------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----
Confidence            3788999999999999876          34455565544 4678999999874446778899999999987632     


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-c
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-T  297 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-~  297 (424)
                       ...+..+. .+..++|+|+++.++++++.++.|++||+++...   +..+. +...+.+++|+|++. ++++++.++ .
T Consensus        66 -~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~---~~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~  138 (300)
T TIGR03866        66 -IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV---LAEIP-VGVEPEGMAVSPDGK-IVVNTSETTNM  138 (300)
T ss_pred             -EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE---EeEee-CCCCcceEEECCCCC-EEEEEecCCCe
Confidence             22233232 3567899999987777777899999999987543   33333 234578899999998 466666654 5


Q ss_pred             EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE-cCC--C
Q 014433          298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH-GGH--T  374 (424)
Q Consensus       298 i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h--~  374 (424)
                      +.+||.++ ...+..... ...+..++|+|++..+++++..++.|++||+.+........          ... ..+  .
T Consensus       139 ~~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~----------~~~~~~~~~~  206 (300)
T TIGR03866       139 AHFIDTKT-YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT----------FEIPGVHPEA  206 (300)
T ss_pred             EEEEeCCC-CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee----------eccccccccc
Confidence            77889886 444433332 34567899999997555666679999999998754321110          000 001  1


Q ss_pred             CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .....++|+|++++++++.+.++.+.+||+.++.+
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            12356889999996566666678899999987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.4e-21  Score=172.47  Aligned_cols=269  Identities=16%  Similarity=0.184  Sum_probs=195.5

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ....|...|+.++|.|..+ .|++++.||.+.+|+++.  ..........++.++.+|.++|.|++..+++. .+++|+.
T Consensus       289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence            4556899999999999877 799999999999999954  22223355788999999999999999999888 7999999


Q ss_pred             CCcEEEEeCCCCCCC----CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       200 dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      ||+|+.|++-.....    ........+.+|.+.|+.+++++...++ ++++.||++++|+......  .......-.+.
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L-lscs~DgTvr~w~~~~~~~--~~f~~~~e~g~  441 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL-LSCSSDGTVRLWEPTEESP--CTFGEPKEHGY  441 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccce-eeecCCceEEeeccCCcCc--cccCCccccCC
Confidence            999999977532211    1112345678999999999999987665 5999999999999876542  11111122334


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      ..++++-.....+.++...-+.-.++++.. ...+..+..       -...+..+.++|..+ +.+++..|+.|+++|..
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceeccccc
Confidence            456666543322222222233333333332 222222221       124578899999986 78899999999999998


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                      ++              .+++....|...++++++.|+|. .|++++.|+.+++|++....+..+
T Consensus       520 ~~--------------~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  520 TG--------------KILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             cc--------------ccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeec
Confidence            86              56777778899999999999999 589999999999999976655443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=6.4e-21  Score=159.95  Aligned_cols=269  Identities=17%  Similarity=0.269  Sum_probs=194.8

Q ss_pred             EeccCCceeEEEecC----CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceeEEEecCC---CC
Q 014433          121 QINHDGEVNRARYMP----QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKF---KE  191 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p----~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~---~~  191 (424)
                      +..|..+|..++|++    +.+.++|+.+. ..+.+|......       ........  ..|....+.++|+-+   +.
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~-------~ir~lq~y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG-------GIRLLQSYADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc-------ceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence            446889999999985    45567888764 578999987621       01111111  136677888898754   23


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      -++|+|+.-|.|+|.|+.+++      ....+.+|...|+.|.++|..++++++++.|..|++|++++..+...+.-+.+
T Consensus       106 p~la~~G~~GvIrVid~~~~~------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg  179 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQ------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG  179 (385)
T ss_pred             eeEEeecceeEEEEEecchhh------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence            378999999999999998774      45567789999999999999999999999999999999999876444444578


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--C------------------------cc-eEecCCCCCEEEEE
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--T------------------------AL-HTFDSHKEEVFQVG  324 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~------------------------~~-~~~~~h~~~v~~~~  324 (424)
                      |...|.++.|++++. .|++++.|.+|++|++....  .                        |. .+-..|...|-|+.
T Consensus       180 HrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  180 HRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             ccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            999999999999999 59999999999999998311  0                        00 12234777788888


Q ss_pred             EcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE--eCCCCCcEEEEEeCCCcEEEE
Q 014433          325 WNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS--WNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       325 ~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      |--   .++++-+-++.|..|......+......+.......+..+.-....|+-+.  |.|-.+ +||.|...|.|.+|
T Consensus       259 w~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  259 WFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW  334 (385)
T ss_pred             HHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Confidence            864   367888888999999884333221111111222234444444455566554  456677 69999999999999


Q ss_pred             ecCCcc
Q 014433          403 QMAENI  408 (424)
Q Consensus       403 ~~~~~~  408 (424)
                      |+....
T Consensus       335 dL~~~e  340 (385)
T KOG1034|consen  335 DLDNNE  340 (385)
T ss_pred             ECCCCC
Confidence            998763

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=3.8e-19  Score=157.29  Aligned_cols=244  Identities=19%  Similarity=0.273  Sum_probs=188.0

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .++.|....|+|.+++++++++ .|.+..|+......       .+....+..+ +.-|.|++|.+++.  +++|..+|.
T Consensus       199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l-------~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~  268 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSL-------VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGN  268 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCce-------EEEeeccccccceEEEEEEEcCCCC--EEeecCCce
Confidence            4567889999999999999876 58999999876211       1112223322 25699999999887  999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-------------------
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------------  263 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------------  263 (424)
                      |.||+..+..      ..+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+..                   
T Consensus       269 i~Iw~~~~~~------~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~  340 (626)
T KOG2106|consen  269 ILIWSKGTNR------ISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG  340 (626)
T ss_pred             EEEEeCCCce------EEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence            9999996553      2333348999999999999885 54 7999999999983211100                   


Q ss_pred             ------------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433          264 ------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW  325 (424)
Q Consensus       264 ------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  325 (424)
                                        .......+|......++.+|+.. +++|++.|+.+++|+  . .++..+... ..++.++.|
T Consensus       341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~-~k~~wt~~~-~d~~~~~~f  415 (626)
T KOG2106|consen  341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D-HKLEWTKII-EDPAECADF  415 (626)
T ss_pred             cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C-CceeEEEEe-cCceeEeec
Confidence                              00112346777888899999877 799999999999999  2 345544443 578899999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      +|.|  .+|.|...|...+.|..+.              .++..+.. ..+++.++|+|+|. +||.|+.|+.|+||.++
T Consensus       416 hpsg--~va~Gt~~G~w~V~d~e~~--------------~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  416 HPSG--VVAVGTATGRWFVLDTETQ--------------DLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             cCcc--eEEEeeccceEEEEecccc--------------eeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence            9998  6999999999999999873              45555555 78899999999999 79999999999999998


Q ss_pred             Ccc
Q 014433          406 ENI  408 (424)
Q Consensus       406 ~~~  408 (424)
                      .+.
T Consensus       478 ~~g  480 (626)
T KOG2106|consen  478 ANG  480 (626)
T ss_pred             CCC
Confidence            763

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4e-20  Score=161.75  Aligned_cols=250  Identities=12%  Similarity=0.172  Sum_probs=192.3

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      +.|+++.|+|..+ ++.+++.||+++||.++...        ...+..+.--..+|.+.+|.|+|...+++++....++.
T Consensus       214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~--------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV--------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             CCceEEEecCCCc-eEEEecCCCcEEEEEecCcc--------ChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            7899999999877 88899999999999998732        23345555567899999999999878999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      ||+.+.+..    .+....++. ..+.....+++++ +++..+..|.|.+....++..   +..++ -.+.|..++|+.+
T Consensus       285 yDle~ak~~----k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el---i~s~K-ieG~v~~~~fsSd  355 (514)
T KOG2055|consen  285 YDLETAKVT----KLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL---ITSFK-IEGVVSDFTFSSD  355 (514)
T ss_pred             eeccccccc----cccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh---hheee-eccEEeeEEEecC
Confidence            999876542    223333333 4577788899987 567889999999999988775   43333 3678999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +.. |++.+.+|.|.+||++. ..+++.+.. .+.  -++++.++++. +||+|+..|.|.|||..+...        ..
T Consensus       356 sk~-l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~--------s~  423 (514)
T KOG2055|consen  356 SKE-LLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFA--------ST  423 (514)
T ss_pred             CcE-EEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCc-eEEeccCcceEEEeccchhhc--------cC
Confidence            985 55555688999999998 477777765 333  36777789986 899999999999999876432        22


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAE  406 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~~  406 (424)
                      .++.+..+..-...|+++.|+++.. +|+-+|  ..+.+++-.+..
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccc
Confidence            3466666666677899999999998 666554  566777766544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=2e-19  Score=168.76  Aligned_cols=241  Identities=20%  Similarity=0.302  Sum_probs=180.5

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (424)
                      +.+.||++...         ..+...+. -...|.++.|+|..+++++.|..+|.|.+||++.+........-.....|.
T Consensus       222 ~~~~vW~~~~p---------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~  291 (555)
T KOG1587|consen  222 GVLLVWSLKNP---------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS  291 (555)
T ss_pred             ceEEEEecCCC---------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence            47999999872         34444444 567899999999999999999999999999999876532222223344689


Q ss_pred             ccEeeEEEecCCCc-EEEEEeCCCeEEEEEcCCCCCCCCeeee---e------ccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014433          228 GVVEDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSV---V------AHQSEVNCLAFNPFNEWILATGSTDKT  297 (424)
Q Consensus       228 ~~v~~~~~~~~~~~-~~~s~~~dg~i~i~d~~~~~~~~~~~~~---~------~~~~~v~~v~~~~~~~~~l~tg~~dg~  297 (424)
                      .+++.+.|..+..+ -|++++.||.|..|+++.-.........   .      .....+++++|.+...+.|+.|+.+|.
T Consensus       292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~  371 (555)
T KOG1587|consen  292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK  371 (555)
T ss_pred             cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence            99999999765433 2458889999999998864331111111   1      123468999999999999999999999


Q ss_pred             EEEEECC---CCC----CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE
Q 014433          298 VKLFDLR---KIS----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH  370 (424)
Q Consensus       298 i~iwd~~---~~~----~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      |.--+..   ...    +....+..|.++|.++.++|.+..++++++ |.+++||......             ..++.+
T Consensus       372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-------------~Pl~~~  437 (555)
T KOG1587|consen  372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-------------SPLLSL  437 (555)
T ss_pred             EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-------------Ccchhh
Confidence            8874332   212    234466778999999999999987777777 8899999876321             345555


Q ss_pred             cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       371 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                      ..+...|++++|||..+.+++++..||.|.+||+.....++.
T Consensus       438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            666777999999999998999999999999999988766543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.4e-18  Score=158.99  Aligned_cols=249  Identities=13%  Similarity=0.193  Sum_probs=193.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +-.+.|.+++|++.++  |.+.+.+|.|.-||+.+          .++...+....+.|++++.+|.+. .++.|+.||.
T Consensus        67 ~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~----------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv  133 (691)
T KOG2048|consen   67 PEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHT----------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV  133 (691)
T ss_pred             CCCCceeeEEEccCCe--EEeecCCceEEEEeccc----------CceeEEecCCCcceeEEEeCCccc-eEEeecCCce
Confidence            4557899999997553  66677899999999998          677778888889999999999887 6999999997


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC----eeeee-ccCCCee
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQSVV-AHQSEVN  277 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~----~~~~~-~~~~~v~  277 (424)
                      +..++...+    .+.....+...++.|.+++|+|++..+ ++|+.||.|++||...+.....    +..+. .....|.
T Consensus       134 l~~~s~~p~----~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  134 LYDFSIGPD----KITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             EEEEecCCc----eEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence            777777544    223344455567899999999998654 6999999999999998765220    00111 1234578


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      ++.|-.++  .|++|...|+|.+||... +..++.+..|...|.+++..+++. .+++++.|+.|.-|.......+    
T Consensus       209 Sv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~----  280 (691)
T KOG2048|consen  209 SVLFLRDS--TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSE----  280 (691)
T ss_pred             EEEEeecC--cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccc----
Confidence            88888665  599999999999999998 789999999999999999999986 6889999999888877664321    


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                            .........|...|.+++..++   .+++||.|..+.+=....
T Consensus       281 ------wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  281 ------WVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ------eeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence                  1122233567777888888766   788999999888766655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=7.8e-19  Score=167.85  Aligned_cols=267  Identities=19%  Similarity=0.243  Sum_probs=182.4

Q ss_pred             CceeEEEecC-CCCcEEEEEeCCCeEEEEeCCCCC-CCCCCCCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          126 GEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHP-SKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       126 ~~v~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ..|+.+.+-. ++..++.+|+.||.|+||+-.... ..++....+..+.. +.+..+.-.-++|..... +|++++.-..
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence            4566666644 445589999999999999865422 12111111111111 111222234567887665 5777776889


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC--eeEEE
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--VNCLA  280 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~v~  280 (424)
                      |+|||.........+     ..+....|+++.-+-.+.+++++|..||.|++||.|.......+...+.|...  |..+.
T Consensus      1189 IRIWDa~~E~~~~di-----P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADI-----PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred             EEEEecccceeEeec-----ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence            999999866443222     12345567777766556678999999999999999987665567777888887  99999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCC-CCcceEecCCC---CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHK---EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~h~---~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      +.+.|-.-|++|+.+|.|++||+|.. .....++..|.   +.++++..+++.+ ++|+|+. +.|+||++.........
T Consensus      1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence            99877656999999999999999983 22233333333   3599999999986 7888888 89999999753221110


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .     .+..+   ....+.+.+++|||..- ++++|+.|.+|.||....+..
T Consensus      1342 ~-----n~~F~---~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1342 Y-----NPGFM---GQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             c-----Ccccc---cCcCCCcceeeecchhH-hhhhccCCceEEEeecCCcCC
Confidence            0     00111   11234579999999987 799999999999999877643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.6e-19  Score=167.35  Aligned_cols=222  Identities=18%  Similarity=0.297  Sum_probs=173.0

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +...|.+++...   ..|++|+.+++|.+|.+..          ......+....-++.+++++-+|. +++.||.|-.|
T Consensus        55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps----------~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~v  120 (933)
T KOG1274|consen   55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPS----------GEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAV  120 (933)
T ss_pred             cCceeEEEeecc---cceEEeeccceEEEeeCCC----------CCccceeeeeeccceEEEEecCCc-EEEeecCceeE
Confidence            677788887654   3789999999999999987          333334555677899999999888 79999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-----cCCCeeE
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----HQSEVNC  278 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~  278 (424)
                      ++-++....      ....+.+|.++|.++.|+|.+. ++|+.+.||.|++||+.++.....+..+..     ....+..
T Consensus       121 K~~~~~D~s------~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~  193 (933)
T KOG1274|consen  121 KLLNLDDSS------QEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR  193 (933)
T ss_pred             EEEeccccc------hheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence            999997763      3566788999999999999986 778999999999999998765333222211     1456778


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      ++|+|++.. |+....|+.|++|+... ......+.  .+...+..++|+|+|. +||+++.||.|.|||..+...    
T Consensus       194 ~aW~Pk~g~-la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~----  266 (933)
T KOG1274|consen  194 LAWHPKGGT-LAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER----  266 (933)
T ss_pred             eeecCCCCe-EEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh----
Confidence            899999885 66777899999999887 55555554  3444599999999996 799999999999999986211    


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                                    ......|.+++|.|+.+
T Consensus       267 --------------~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  267 --------------HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             --------------ccccceeEEEecCCCCC
Confidence                          11234688889988876

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=3.3e-20  Score=151.23  Aligned_cols=251  Identities=17%  Similarity=0.217  Sum_probs=184.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      +|.+.|+++.|..++.  |.+|...|.|++|.+++          ......+. .|...|+.+.--|++  .|.+-+.|+
T Consensus        12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt----------~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~   77 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQT----------ERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDP   77 (323)
T ss_pred             cccchheehhhccchh--hhcccccceEEEEEeec----------CccchhhhhhccceeeceeecCCc--chhhcCCCc
Confidence            9999999999988764  88899999999999998          34444555 467788999888864  389999999


Q ss_pred             cEEEEeCCCCCCC--------------Ccc----c---c----------------------eee----eecCCccEeeEE
Q 014433          202 QICLWDINAAPKN--------------KSL----E---A----------------------MQI----FKVHEGVVEDVA  234 (424)
Q Consensus       202 ~i~iwd~~~~~~~--------------~~~----~---~----------------------~~~----~~~~~~~v~~~~  234 (424)
                      .+.+|++......              ..+    +   .                      +..    -.+..+.+.+..
T Consensus        78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~  157 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD  157 (323)
T ss_pred             eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence            9999998762110              000    0   0                      000    001123344444


Q ss_pred             Eec--CCCcEEEEEeCCCeEEEEEcCCCCC-------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433          235 WHL--RHEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       235 ~~~--~~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~  305 (424)
                      +..  ....++++|..+|.+.+||+.++..       .+.......|..+|.++.+.+.-.. =++|+.+..+..|.+..
T Consensus       158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNH  236 (323)
T ss_pred             ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeecc
Confidence            322  1234667888999999999998621       1223334568999999999875442 45677778899998875


Q ss_pred             CCC---cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433          306 IST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW  382 (424)
Q Consensus       306 ~~~---~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  382 (424)
                      ...   ....+...+-.|..+..-|+++ ++|+++.|++|+||..++.              +.+..+.-|...|++++|
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl--------------~pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL--------------NPLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC--------------CchhhhhhhhcceeEEEe
Confidence            211   1223333456789999999996 9999999999999999986              557777889999999999


Q ss_pred             CCCCCcEEEEEeCCCcEEEEec
Q 014433          383 NPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       383 ~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      +|+.+ ++++++.|++|.+|++
T Consensus       302 spd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCc-hhhhccCCceEEeeec
Confidence            99988 8999999999999986

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=2.4e-19  Score=164.20  Aligned_cols=277  Identities=16%  Similarity=0.259  Sum_probs=199.4

Q ss_pred             cEEEEE-EeccCCceeEEEecCCC--CcEEEEEeCCCeEEEEeCCCCCCCC----C------CC-CCCCCc---------
Q 014433          115 KVQIIQ-QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKP----P------LD-GACSPD---------  171 (424)
Q Consensus       115 ~~~~~~-~~~h~~~v~~~~~~p~~--~~~latg~~dg~v~iw~~~~~~~~~----~------~~-~~~~~~---------  171 (424)
                      ++.... .-+|.+-|.+|+|...+  ..+||+++.|..||||.+.-.....    .      .. ......         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            444443 34799999999998754  4689999999999999986432111    0      00 000001         


Q ss_pred             -EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          172 -LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       172 -~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                       ..+.||.+-|+++.|+|.+. .|++++.|.++.+|......-...- -.+....+.........|+|++. .+++-+..
T Consensus       260 eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~  337 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRT  337 (764)
T ss_pred             hhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEeccc
Confidence             12348999999999999886 5999999999999988655322111 01112223345688999999986 45577889


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC----------CC------------
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK----------IS------------  307 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~----------~~------------  307 (424)
                      |..++|...............+|...|..|+|+|.|++ |++.+.|-+-++|-.-.          ++            
T Consensus       338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             CcEEEEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            99999995554433444556789999999999999994 66777888877763210          00            


Q ss_pred             --------------------------------------------------------------------------------
Q 014433          308 --------------------------------------------------------------------------------  307 (424)
Q Consensus       308 --------------------------------------------------------------------------------  307 (424)
                                                                                                      
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence                                                                                            


Q ss_pred             -------------------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCC-----eEEEeeCCCCCcccCCCCcCCCC
Q 014433          308 -------------------TALHTFDSHKEEVFQVGWNPKNETILASCCLGR-----RLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       308 -------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                                         ..++.+-+|...|.+++.+|++. ++|+++...     .|++|+..+..            
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~------------  563 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWL------------  563 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchh------------
Confidence                               00334457888999999999995 899988643     59999998753            


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                        ....+.+|.-.|+.++|+|+++ +|++.+.|.++.+|........
T Consensus       564 --~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~  607 (764)
T KOG1063|consen  564 --QVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKD  607 (764)
T ss_pred             --hhheecccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccch
Confidence              2446789999999999999999 5888899999999999766543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.8e-17  Score=151.75  Aligned_cols=268  Identities=10%  Similarity=0.140  Sum_probs=173.5

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ++++.++.+.+.+....++++|+++.+++++..++.|.+|++...       +......... .......++++|+++. 
T Consensus        23 g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-------g~l~~~~~~~-~~~~p~~i~~~~~g~~-   93 (330)
T PRK11028         23 GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-------GALTFAAESP-LPGSPTHISTDHQGRF-   93 (330)
T ss_pred             CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-------CceEEeeeec-CCCCceEEEECCCCCE-
Confidence            456667777777888899999999865566567899999998731       1111111111 2335678999999984 


Q ss_pred             EEEE-eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC----eee
Q 014433          194 LLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQS  268 (424)
Q Consensus       194 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~----~~~  268 (424)
                      |+++ ..++.|.+|+++......  ..+..+. +......++++|+++.++++...++.|.+||+.+.....+    ...
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            5554 458999999997432211  1122222 2344677889999998888888889999999986432211    011


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C--CcceEecCC------CCCEEEEEEcCCCCcEEEEEECC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S--TALHTFDSH------KEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~--~~~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      . ........++|+|++++++++...++.|.+||+... +  ..+..+..+      ......+.++|+++.++++...+
T Consensus       171 ~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~  249 (330)
T PRK11028        171 T-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA  249 (330)
T ss_pred             c-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence            1 123456789999999965555555899999999742 1  223333221      12334689999997544444557


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      +.|.+|++......          ..++..... ......++++|++++++++...++.|.+|++.
T Consensus       250 ~~I~v~~i~~~~~~----------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        250 SLISVFSVSEDGSV----------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CeEEEEEEeCCCCe----------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            89999999653211          011222111 12456899999999766666669999999885

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-19  Score=152.46  Aligned_cols=197  Identities=21%  Similarity=0.313  Sum_probs=156.1

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      .+|++...|.|++||..+++      .+..+++++..++.+.|... +.+.+.+|+.||+|++||+|..... +......
T Consensus        42 ~vav~lSngsv~lyd~~tg~------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~  114 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQ------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQ  114 (376)
T ss_pred             eEEEEecCCeEEEEeccchh------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccC
Confidence            68889999999999998763      45667788999999999875 7778889999999999999987643 3334444


Q ss_pred             cC-CCeeEEEecCCCCeEEEEEeC----CCcEEEEECCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          272 HQ-SEVNCLAFNPFNEWILATGST----DKTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       272 ~~-~~v~~v~~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      +. .+..|++.+-.+. ++++|..    +-.|.+||+|+..+++.. ...|...|+++.|+|..+.+|++|+.||.|.||
T Consensus       115 ~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  115 QSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             CCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence            44 5778888776555 7888864    568999999997775555 457999999999999999999999999999999


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |+....+.           ..+.....|.+.|..+.|...+-..|.+-+......+|+++.+.
T Consensus       194 D~~~d~Ee-----------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  194 DTKKDNEE-----------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             ecCCCcch-----------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            99875332           12222335667799999998873347777889999999999886

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=2.1e-18  Score=161.20  Aligned_cols=267  Identities=18%  Similarity=0.248  Sum_probs=204.4

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ++........|.+.|.-+.  |-|. .++++..++.+.||+......+.     ......++...+.|+++.--+.--+.
T Consensus       103 gk~i~~~~~~~~a~v~~l~--~fGe-~lia~d~~~~l~vw~~s~~~~e~-----~l~~~~~~~~~~~Ital~HP~TYLNK  174 (910)
T KOG1539|consen  103 GKHIRHTTLLHGAKVHLLL--PFGE-HLIAVDISNILFVWKTSSIQEEL-----YLQSTFLKVEGDFITALLHPSTYLNK  174 (910)
T ss_pred             cceEEEEeccccceEEEEe--eecc-eEEEEEccCcEEEEEeccccccc-----cccceeeeccCCceeeEecchhheee
Confidence            3344444456776776654  3465 45556889999999988731110     11122233333337777643333345


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      ++.|+.+|.+.+|+++++      +.+..++++...|+++.-+|-=. ++|.|..+|+|.+++++.++.   +..++...
T Consensus       175 IvvGs~~G~lql~Nvrt~------K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dki---l~sFk~d~  244 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTG------KVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKI---LMSFKQDW  244 (910)
T ss_pred             EEEeecCCcEEEEEeccC------cEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcE---EEEEEccc
Confidence            999999999999999988      45778888999999999888754 788999999999999999775   66766556


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      +.|++++|.-+|..++|+|+..|.+.+||+............|.+.|..+.|.|..+ ++++++.|..+++|-..++   
T Consensus       245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~---  320 (910)
T KOG1539|consen  245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSG---  320 (910)
T ss_pred             cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCC---
Confidence            999999999999999999999999999999984333444558999999999999886 8999999999999877654   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                             ++.+++++.-.||..+..+++|.-...+.+.+++.|++++.+++.....
T Consensus       321 -------dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~  369 (910)
T KOG1539|consen  321 -------DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ  369 (910)
T ss_pred             -------CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence                   3446888999999999999999844334799999999999988865543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.8e-18  Score=137.73  Aligned_cols=248  Identities=16%  Similarity=0.205  Sum_probs=175.1

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .|.+-+++|.++ ++++|..+|.|.++.+....+.........++...++|.++++.++|..  . +|++|+ ||.|+-|
T Consensus        12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence            566678999876 7999999999999999875443332233445566789999999999983  3 577766 4999998


Q ss_pred             eCCCCCCCCccc-------ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          207 DINAAPKNKSLE-------AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       207 d~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      .-+........+       +.+.-...--.|+++...|..+.+| .++.|+.++-||+.+++.   ...+++|+..|.++
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---QREYRGHTDYVHSV  162 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE---EEEEcCCcceeeee
Confidence            765433211111       1111011123689999999888777 455899999999999875   67889999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---------C-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---------h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .--..+. .+++|+.||++++||.++ .+.+..+..         | ...|.+++-+.  . .|++| ....+.+|.++.
T Consensus       163 v~R~~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCG-gGp~lslwhLrs  236 (325)
T KOG0649|consen  163 VGRNANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCG-GGPKLSLWHLRS  236 (325)
T ss_pred             eecccCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC--c-eEEec-CCCceeEEeccC
Confidence            9844344 488999999999999998 666665542         1 23466666554  3 45444 455699999998


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ...            .+++.+.+|   +..+.|..+   ++++++..+.|.-|.+..-
T Consensus       237 se~------------t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  237 SES------------TCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             CCc------------eEEEecccc---eeEeeeecc---eEEEeccccceeeeeeccE
Confidence            643            556666554   566777644   6778888888999988643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=1.1e-18  Score=158.44  Aligned_cols=241  Identities=15%  Similarity=0.264  Sum_probs=176.5

Q ss_pred             EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-Ccccceee
Q 014433          144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI  222 (424)
Q Consensus       144 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~  222 (424)
                      .+.-|.|-||+++.....+.     ...-.+ .....|+.+.|.|.....|++++.||.|++|.+..+... ....+...
T Consensus       599 ~g~gG~iai~el~~PGrLPD-----gv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~  672 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPD-----GVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI  672 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCc-----cccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence            45578999999987433321     001112 245679999999998889999999999999999876543 34456677


Q ss_pred             eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014433          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD  302 (424)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd  302 (424)
                      +..|...|+++.|+|-...++++++.|.+|++||+++...   ...+.+|.+.|..++|+|+|+ .+|+.+.||+|++|.
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYE  748 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeC
Confidence            8899999999999998888999999999999999999764   567789999999999999998 699999999999999


Q ss_pred             CCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECC----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCc
Q 014433          303 LRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLG----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI  377 (424)
Q Consensus       303 ~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  377 (424)
                      .|+..++++.-.+.. ..-..+.|.-+|..++ +.+.|    ..|.+||.......          +.....+..-. .+
T Consensus       749 Prs~e~pv~Eg~gpvgtRgARi~wacdgr~vi-v~Gfdk~SeRQv~~Y~Aq~l~~~----------pl~t~~lDvap-s~  816 (1012)
T KOG1445|consen  749 PRSREQPVYEGKGPVGTRGARILWACDGRIVI-VVGFDKSSERQVQMYDAQTLDLR----------PLYTQVLDVAP-SP  816 (1012)
T ss_pred             CCCCCCccccCCCCccCcceeEEEEecCcEEE-EecccccchhhhhhhhhhhccCC----------cceeeeecccC-cc
Confidence            998777777655432 3446788999997544 44444    45778877654210          01111111111 11


Q ss_pred             ceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          378 SDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .--.+.+|...++++|-.|..|.+|.+-.
T Consensus       817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             ccccccCCCceEEEecCCCceEEEEEecC
Confidence            12235566776888888899999998754

>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3

Probab=99.81  E-value=7.6e-21  Score=129.75  Aligned_cols=71  Identities=54%  Similarity=0.943  Sum_probs=54.1

Q ss_pred             HHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCC-CCCCCCCceEEEEEeecCCCCCCCeEEEEEEECC
Q 014433           18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRE-EPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLP   88 (424)
Q Consensus        18 ~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~   88 (424)
                      +|+|++||+|+|++||+++++.++||||||||+|+.. +..+..+..+++++||+|+++++|+|.|+++.+|
T Consensus         1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p   72 (74)
T PF12265_consen    1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP   72 (74)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred             CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence            5789999999999999999999999999999999988 5544345689999999999999999999999887

1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=155.52  Aligned_cols=230  Identities=20%  Similarity=0.247  Sum_probs=169.5

Q ss_pred             EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCC
Q 014433          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQ  250 (424)
Q Consensus       172 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg  250 (424)
                      ..+.||.+.|++|+|+.+|. +|++||.|-.+.|||.-..+..     ...-.+|...|.++.|-|. +..++++|..|.
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kll-----hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLL-----HSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhccccceecceeecCCCC-EEeecCCcceEEeecchhccee-----eeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            46889999999999999998 8999999999999999754322     2224589999999999994 456788999999


Q ss_pred             eEEEEEcCCCCC-------CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---------
Q 014433          251 YLLIWDLRTPSV-------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---------  314 (424)
Q Consensus       251 ~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---------  314 (424)
                      .|++||+...+.       ..+...+..|...|..|+-.|.+++.+.+++.||+|+-+|+|.+..+.....         
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            999999985221       2244555678999999999999989999999999999999997543322221         


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-CCCCC---eeeE-EEcCCC-----------CCcc
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA-EDGPP---ELLF-IHGGHT-----------SKIS  378 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~---~~~~-~~~~h~-----------~~v~  378 (424)
                      ..--...++..+|..+.+||.|+.|-..++||.+........... ...|+   .++. -..+|.           ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            112356889999999999999999999999996544322211111 11111   1111 112222           1256


Q ss_pred             eEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          379 DFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      -+.|+|+|.-+|++-+.+ .|+++++..+.
T Consensus       278 ~vtfnpNGtElLvs~~gE-hVYlfdvn~~~  306 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGE-HVYLFDVNEDK  306 (758)
T ss_pred             EEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence            789999999888887754 59999998763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=1.6e-17  Score=139.37  Aligned_cols=213  Identities=16%  Similarity=0.191  Sum_probs=169.6

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ..++|+|.+|+++.. .+|++..+..|.||.....       ..+.+..++..|...|++++|+|..+ .|++|+.|..-
T Consensus         9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~-------~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drna   79 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGA-------DLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNA   79 (361)
T ss_pred             ccCceeeeeecCCCc-eEEeccCCceEEEEEecCC-------CCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCc
Confidence            357999999999887 7999999999999998872       22777889999999999999999887 69999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-CCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~v~~~  282 (424)
                      ++|....+   ...++...+..+...++++.|+|.++ .||+|+.-..|.||-....... ...+.-+.+.+.|++++|+
T Consensus        80 yVw~~~~~---~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh  155 (361)
T KOG1523|consen   80 YVWTQPSG---GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH  155 (361)
T ss_pred             cccccCCC---CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence            99998543   34445555666889999999999875 7889999999999988775532 1112223567889999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCC-----C------------CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          283 PFNEWILATGSTDKTVKLFDLRK-----I------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~-----~------------~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      |++- +|++|+.|+..++|..--     .            ++.+..+....+.|..+.|+|.|. .|+-.+.|+.+.+-
T Consensus       156 pnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  156 PNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFV  233 (361)
T ss_pred             CCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEe
Confidence            9876 899999999999986421     0            122344445568899999999996 69999999999999


Q ss_pred             eCCCCC
Q 014433          346 DLSRID  351 (424)
Q Consensus       346 d~~~~~  351 (424)
                      |.....
T Consensus       234 da~~p~  239 (361)
T KOG1523|consen  234 DAAGPS  239 (361)
T ss_pred             ecCCCc
Confidence            877643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=154.76  Aligned_cols=220  Identities=22%  Similarity=0.362  Sum_probs=166.1

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceeEEEecCCC-CceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFK-EGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~~l~s~~  198 (424)
                      ..+|++.|+|+.|+.+|. +||+|+.|-.+.|||.-.          .++... -.+|...|.++.|-|.. ..++++|+
T Consensus        46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             hccccceecceeecCCCC-EEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            348999999999999997 999999999999999875          344443 35899999999999963 33688999


Q ss_pred             CCCcEEEEeCCCCCCC----CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-------
Q 014433          199 DDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-------  267 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-------  267 (424)
                      .|..|+++|+...+..    ........+..|...|..|+..|.+++.|-+++.||+|+-+|+|.+....+-.       
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            9999999999853321    12234556778999999999999999999999999999999999854322211       


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-----------------cceEec-CCC-----------C
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-----------------ALHTFD-SHK-----------E  318 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-----------------~~~~~~-~h~-----------~  318 (424)
                      .+...--...|+..+|..+++||+|+.|-..++||.|...+                 ++.-+. +|-           .
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~  274 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT  274 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence            11122235679999999999999999999999999653211                 122221 121           1


Q ss_pred             CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      .++-+.|+|+|.-+|++-+.+ .|+++|+.....
T Consensus       275 ~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  275 CCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             eeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence            256788999998777776655 599999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=1.1e-17  Score=152.85  Aligned_cols=248  Identities=15%  Similarity=0.186  Sum_probs=183.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .|+.++|-|+|..+++++  +..+.|||.+.          .....++++|...|++++|+.+|+ ++++|+.|..|.+|
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~nd----------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSD----------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW   80 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCC----------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence            899999999998777654  45899999987          566788999999999999999998 79999999999999


Q ss_pred             eCCCCCCC-----Ccccce------------------------eeeec--CCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433          207 DINAAPKN-----KSLEAM------------------------QIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (424)
Q Consensus       207 d~~~~~~~-----~~~~~~------------------------~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~  255 (424)
                      +..-....     ..+++.                        +....  ....+.+++|..+|. +++.|-.+|+|.+-
T Consensus        81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIR  159 (1081)
T ss_pred             cccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEee
Confidence            86543211     111000                        00001  234677888888886 55688899999887


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEecCCCC----eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE----WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      +-.. +....+....+..++|.+++|+|...    .++++.....++.+|.+..  +.+..-..-+-...|+.+.++|+ 
T Consensus       160 Nk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGE-  235 (1081)
T KOG1538|consen  160 NKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGE-  235 (1081)
T ss_pred             cCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCc-
Confidence            5433 22233444455778999999999632    2677777788888888763  33333333344567899999997 


Q ss_pred             EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      ++..|+.|+.+++|.-..               ..+.+.......|+.++..|+++ .++.|+.||+|.-|++....
T Consensus       236 y~LiGGsdk~L~~fTR~G---------------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFTRDG---------------VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             EEEEccCCCceEEEeecC---------------eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHhH
Confidence            677888899999997543               45666666778999999999999 58889999999999886553

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=2.6e-16  Score=148.92  Aligned_cols=254  Identities=24%  Similarity=0.453  Sum_probs=195.2

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEe-cCCCCceEEEE
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSW-SKFKEGHLLSG  197 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~  197 (424)
                      ....|...+.++.+.+.+. .++.++.++.+.+|+.....         .....+.++. ..+..+.+ ++++..+++..
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLALSSPDGNSILLAS  129 (466)
T ss_pred             eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCc---------eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence            3567899999999999886 67777889999999998721         1344555533 36777777 67666345554


Q ss_pred             eC-CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          198 SD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       198 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +. |+.+.+|++...     ......+..|...|..++|+|++. .+++++. |+.+++|++....   .+..+..|...
T Consensus       130 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  200 (466)
T COG2319         130 SSLDGTVKLWDLSTP-----GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK---PLSTLAGHTDP  200 (466)
T ss_pred             CCCCccEEEEEecCC-----CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc---eEEeeccCCCc
Confidence            44 999999999761     134566778999999999999998 4456664 9999999999844   36667779999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      +.+++|+|++..++++++.|+.|++||.+. +..+. .+..|...+ -..|+|++ .++++++.|+.+++|++.....  
T Consensus       201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~--  275 (466)
T COG2319         201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS--  275 (466)
T ss_pred             eEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc--
Confidence            999999998874555568999999999885 56666 688888775 44899998 4788999999999999987532  


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                 .+....+|...|..+.|+|++. .+++++.|+.+++|+......
T Consensus       276 -----------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         276 -----------LLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             -----------EEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce
Confidence                       1222367888999999999888 455588889999998877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=1e-16  Score=137.06  Aligned_cols=244  Identities=13%  Similarity=0.202  Sum_probs=171.5

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QIC  204 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~  204 (424)
                      .++.+.|+.+.. +|..|+.|| -++|+....          ............|..+-|+.   .++|..+.+.  .++
T Consensus         7 ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~----------~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lk   71 (391)
T KOG2110|consen    7 TINFIGFNQDST-LLSVGSKDG-YKIFSCSPF----------EKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLK   71 (391)
T ss_pred             ceeeeeecccee-EEEccCCCc-eeEEecCch----------HHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEE
Confidence            455566887664 888999887 678887751          11111111223455556654   2566555543  488


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      +.+++....      +..+. ...+|.++.++.+  .++ ++-. ..|+|||+++.+....+.....+...+.++++++.
T Consensus        72 v~~~Kk~~~------ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~  140 (391)
T KOG2110|consen   72 VVHFKKKTT------ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA  140 (391)
T ss_pred             EEEcccCce------EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCC
Confidence            888875532      22222 4678999998854  344 4433 45999999997765555555556677888888887


Q ss_pred             CCeEEEEEeC-CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCCCcCCC
Q 014433          285 NEWILATGST-DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       285 ~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +.++..-++. .|.|.|||+.+ -+++..+..|++++.+++|+++|. +|||++..|+ ||||.+..+            
T Consensus       141 n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G------------  206 (391)
T KOG2110|consen  141 NCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG------------  206 (391)
T ss_pred             CceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc------------
Confidence            7653333443 58999999998 688999999999999999999995 8999999987 789999876            


Q ss_pred             CCeeeEEEcCC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          363 PPELLFIHGGH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       363 ~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                        +.++.++..  ...|.+++|+|+++ +|++.|..++|+||++.+...+..+
T Consensus       207 --~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~~  256 (391)
T KOG2110|consen  207 --QKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPPE  256 (391)
T ss_pred             --cEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCCC
Confidence              344444432  23588999999999 6888889999999999988744433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.4e-18  Score=140.33  Aligned_cols=199  Identities=12%  Similarity=0.214  Sum_probs=151.2

Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      ..|+.|++.|. +||+|..||.|.|||+.+..      ..+.+.+|..+|.+++|+++|+.+ ++++.|..|.+||+..+
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDGRKL-LTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCCCEe-eeecCCceeEEEeccCC
Confidence            78999999998 89999999999999998764      345567899999999999999865 59999999999999998


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC---CCCEEEEEEcCCCCcEEEEEE
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH---KEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h---~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      ..   ++.+. ..++|....|+|...+..++.-.+..-.+-++..+...+......   +..-.+..|.+.|+ ++++|.
T Consensus        98 s~---l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGt  172 (405)
T KOG1273|consen   98 SP---LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGT  172 (405)
T ss_pred             Cc---eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEec
Confidence            85   44443 478999999999887766666666666666666422211111111   11223346888886 789999


Q ss_pred             CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ..|.+.++|..+.              +++..++-.. ..|..+.++..|+ +|+.-+.|..|+.|+++.-
T Consensus       173 sKGkllv~~a~t~--------------e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  173 SKGKLLVYDAETL--------------ECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             CcceEEEEecchh--------------eeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence            9999999999886              3344433333 5688899999999 5777788999999999743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=2.3e-19  Score=167.51  Aligned_cols=248  Identities=22%  Similarity=0.315  Sum_probs=192.6

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      +.++|..+|+|+.|...|. ++++|+.|..|+||...+          ......+.||.+.|+.++.+.++. ++++++.
T Consensus       185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~  252 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNT-MIAAASN  252 (1113)
T ss_pred             HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhh-hhhhccc
Confidence            3457999999999999885 899999999999999877          566778999999999999998666 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC-CCCCCCCeeeeeccCCCeeE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR-TPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~v~~  278 (424)
                      |..|++|.+..+      .++..+.+|++.|++|+|+|-.     +.+.||++++||.+ ......+...-......+.+
T Consensus       253 D~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  253 DKVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             CceEEEEecCCC------chHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence            999999999877      4567788999999999999853     77899999999998 21110000000122456777


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +.|...+. -++||+.|+.-..|.+...       ..+...+.-+.++.+...+.+++-.+-.+++|++..+        
T Consensus       322 ~~~~~~~~-~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g--------  385 (1113)
T KOG0644|consen  322 ILFENNGD-RFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG--------  385 (1113)
T ss_pred             eecccccc-ccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccc--------
Confidence            88888777 4889999998888765431       1223333333343344356777778888999999886        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                            .+.....+|...++.+.++|-.+.+..+++.||...|||+..+.-...
T Consensus       386 ------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~  433 (1113)
T KOG0644|consen  386 ------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH  433 (1113)
T ss_pred             ------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence                  556777899999999999999887778999999999999998865443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.9e-16  Score=149.41  Aligned_cols=268  Identities=15%  Similarity=0.202  Sum_probs=183.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.-.+++.+++|.+. ++|+|..||.|.+|.--...      ........+.-|..+|.+++|+++|. +|++|+..|.
T Consensus       203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~V  274 (792)
T KOG1963|consen  203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGV  274 (792)
T ss_pred             hhcccceeEEeccccc-eEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCc-eEeecccceE
Confidence            4677799999999885 89999999999999854411      12233456777999999999999998 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--------cCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--------HQS  274 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~  274 (424)
                      +.+|.+.++++  .     .+..-.++|..+.++|++. +.+....|..|.+....+......+..+..        ..+
T Consensus       275 Lv~Wq~~T~~k--q-----fLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  275 LVLWQLETGKK--Q-----FLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             EEEEeecCCCc--c-----cccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            99999998752  1     2334578999999999987 556778899999987754332211221111        233


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---------------------------------------------
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA---------------------------------------------  309 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---------------------------------------------  309 (424)
                      -.+.++++|.-+ .++-.+..|.|.+||+-+....                                             
T Consensus       347 l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~  425 (792)
T KOG1963|consen  347 LTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF  425 (792)
T ss_pred             cceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence            455667777333 3555566677777776432100                                             


Q ss_pred             ----------------------ceEecCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433          310 ----------------------LHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       310 ----------------------~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                                            ......|...+...++.+..+. .+++++.||.++||-+..........    ....+
T Consensus       426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----s~W~c  501 (792)
T KOG1963|consen  426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----SNWTC  501 (792)
T ss_pred             cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc----cceEE
Confidence                                  0111246665556655544333 78899999999999996544332221    12244


Q ss_pred             eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC-ccCCCCC
Q 014433          367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE-NIYHDED  413 (424)
Q Consensus       367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~  413 (424)
                      .....-|..+++.++|+.||.  +++.+.|++|.+||..+ ..+....
T Consensus       502 ~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~~~  547 (792)
T KOG1963|consen  502 KAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLCTE  547 (792)
T ss_pred             eeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhccc
Confidence            444445888999999999998  44557799999999998 5544433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.6e-17  Score=141.52  Aligned_cols=198  Identities=16%  Similarity=0.276  Sum_probs=147.1

Q ss_pred             eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      ..++|+.+|. .+++|+.||++|+|+....      ..+.....|...|.++.|+|++. ++++.+.| ..+||+++++.
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~------~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSM------LTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcc------hhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc
Confidence            6799999888 7999999999999996433      23334456899999999999997 55688888 99999999985


Q ss_pred             CCCCeeeee--ccCCCeeEEEecCCC---Ce-EEEEEeCCCcEEEEECCCCCC----cceEecCCCCCEEEEEEcCCCCc
Q 014433          262 VSKPVQSVV--AHQSEVNCLAFNPFN---EW-ILATGSTDKTVKLFDLRKIST----ALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       262 ~~~~~~~~~--~~~~~v~~v~~~~~~---~~-~l~tg~~dg~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      .   +....  ..+.....+.|..++   .. +++.-..-+.|+.||+.....    +..+...-...|++++.+++|+ 
T Consensus       219 ~---~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-  294 (398)
T KOG0771|consen  219 A---LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-  294 (398)
T ss_pred             h---hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-
Confidence            3   32221  223345566676655   22 233333456777777654322    2222223345899999999996 


Q ss_pred             EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ++|.|+.||.|.|++....+             .+.+..+.|...|+.+.|+|+.++ +++.+.|....|..+.-
T Consensus       295 f~AlGT~dGsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  295 FLALGTMDGSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeccCCcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence            89999999999999998764             455666789999999999999995 77788899999988876

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=1e-17  Score=149.49  Aligned_cols=209  Identities=17%  Similarity=0.215  Sum_probs=162.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .++.++.||.+.|.+-..           +....+.+|.+.+.+-.|+|+|.+ |++++.||.|++|.-...-       
T Consensus        77 ~~~i~s~DGkf~il~k~~-----------rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsGML-------  137 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA-----------RVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSGML-------  137 (737)
T ss_pred             eEEEEcCCceEEEecccc-----------hhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccchH-------
Confidence            577778999999988654           444567889999999999999995 9999999999999864321       


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                      ...+.....+|.|++|.|+...++.+.  .+.+.|=-+....   .+...++|.+-|.++.|++... ++++|+.|-..+
T Consensus       138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc---ceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            111223567899999999998877553  4566666665533   3667889999999999999887 899999999999


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      +||-.  +.++..-..|..+|++++|.|+.  +++.++.. ++++   .                      ....+.|..
T Consensus       212 vWD~~--G~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~---~----------------------~p~~GSifn  261 (737)
T KOG1524|consen  212 IWDAQ--GANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARF---S----------------------SPRVGSIFN  261 (737)
T ss_pred             eeccc--CcccccCChhccceeeeeecccc--ceeeeeee-eeee---c----------------------CCCccceEE
Confidence            99976  68888888999999999999993  46565543 3431   1                      123456999


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      ++|++||. .+++|...|.+.+=-.
T Consensus       262 lsWS~DGT-Q~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  262 LSWSADGT-QATCGTSTGQLIVAYA  285 (737)
T ss_pred             EEEcCCCc-eeeccccCceEEEeee
Confidence            99999999 5888888887765433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=7.2e-18  Score=148.79  Aligned_cols=271  Identities=20%  Similarity=0.315  Sum_probs=195.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceeEEEecCCC-CceEEEEeC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFK-EGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~~l~s~~~  199 (424)
                      -.|.+.|+.|.|+..|. .+++|+.|..|.+||...          ..+.. -..+|...|..-.|.|.. ..-+++++.
T Consensus       139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~----------~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVS----------GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             cCCCCccceeeecccCc-eeeccCccceEEeehhhc----------cCcccccccccccchhhhhccCCCCCcCceeccc
Confidence            36999999999999886 899999999999999987          23333 345798889888898863 335999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC---Ce
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS---EV  276 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v  276 (424)
                      ||.+++=.+-......   ....+..|.++|..++.-|+.++-|.+++.|+.+.-+|+++......+..-..+..   ..
T Consensus       208 dgqvr~s~i~~t~~~e---~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVE---NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             cCceeeeeecccccee---cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence            9999987765443322   22335569999999999999999999999999999999998764333333333344   57


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-----ceEecCC------CCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-----LHTFDSH------KEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      .+++.+|.+.+.+|+|+.|-.+++||.|...+.     +..+..|      .-.|++++++.++.-+|++-. |-.|++|
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF  363 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLF  363 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEe
Confidence            899999999999999999999999999864322     3333322      347999999987766676655 4458888


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCC--CcceEEe-CCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSW-NPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .-..+ ....+.......+.....++||.+  .|..+-| -|... ++++|++-|.|.||+-.++.+
T Consensus       364 ~~~~~-~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  364 NKSMG-DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             ccccc-cCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHH
Confidence            43322 111111101011222334788864  4666665 57777 699999999999999988743

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=7.3e-17  Score=156.84  Aligned_cols=284  Identities=12%  Similarity=0.189  Sum_probs=188.6

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ..+.....|...|..++.++....++++|+.||+|++|+..+.....   +..+...++..-...+.++...+.+. .+|
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~-~~A 1114 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGD-QFA 1114 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCC-eEE
Confidence            34455667999999999999775699999999999999998743332   12233344444567888999988787 699


Q ss_pred             EEeCCCcEEEEeCCCCCCC-CcccceeeeecC-CccEee-EEEecCCC-cEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433          196 SGSDDAQICLWDINAAPKN-KSLEAMQIFKVH-EGVVED-VAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~v~~-~~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      .++.||.|++.+++..... ......+....+ .+.+.+ -++..... .+++.+...+.|..||++.......++. ..
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QL 1193 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Cc
Confidence            9999999999999873211 111112222222 233333 34433333 3777888999999999998664322322 22


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCC--cEEEEEE--CCCeEEEee
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNE--TILASCC--LGRRLMVWD  346 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~--~~l~s~~--~dg~i~iwd  346 (424)
                      ..+.|++++.+|.+. .+++|+..|.+.+||+|- +.++..+. .+..++..+..+|-.+  ...++++  ..+.|.+|+
T Consensus      1194 ~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             cccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence            347899999999888 699999999999999996 66766655 4557888888887554  4444444  467899999


Q ss_pred             CCCCCcccCCCCcCCCCCeeeEEEc------CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          347 LSRIDEEQTPEDAEDGPPELLFIHG------GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +.++.+.+........+ .+-....      .+.-......+..-+. ++.+|+.|..|+.||.....
T Consensus      1272 ~~~g~~~~vl~~s~~~p-~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAP-ILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cccCcceEEEEcCCCCc-chhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcc
Confidence            99987655443331111 1111000      1121222233333334 78999999999999997653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=9.8e-17  Score=153.77  Aligned_cols=258  Identities=19%  Similarity=0.284  Sum_probs=179.1

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCceeEEEecC-CCCceEEEEeCCC
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSK-FKEGHLLSGSDDA  201 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~l~s~~~dg  201 (424)
                      .+...+.|+|-.+ .++++...-.|+|||.+..          .....+..   ....|+.+.+-. +...++++|+.||
T Consensus      1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~----------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEKG----------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred             CCCceeeecCCCc-eeEEcCCcceEEEEecccC----------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence            3567788999877 6777776779999999872          22222222   234678887643 3445899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeee---cC----CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccC
Q 014433          202 QICLWDINAAPKNKSLEAMQIFK---VH----EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ  273 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~---~~----~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~  273 (424)
                      .|+||+--.... ...+.+..+.   ++    .+.-.-+.|.....+++ ++|.-..|+|||......   +..+ .+..
T Consensus      1134 vIRIwk~y~~~~-~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~---~~diP~~s~ 1208 (1387)
T KOG1517|consen 1134 VIRIWKDYADKW-KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQV---VADIPYGSS 1208 (1387)
T ss_pred             eEEEeccccccc-CCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEeccccee---EeecccCCC
Confidence            999997544321 1111111111   11    11113456777777777 445578999999987654   2222 2345


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCC--EEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ..|+++.-+..+.+++++|..||.|++||.|....  .+.....|+..  |..+.+.+.|-.-|++|+.||.|++||++.
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            67888877666656999999999999999997543  67788888887  999999997755599999999999999998


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                      ....            .......|   .+.++++..|++.+ ++|||+. +.|+||++....++...
T Consensus      1289 ~~~e------------~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1289 SSKE------------TFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             Cccc------------ccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence            4211            11111222   22589999999999 8999887 99999999988765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=3.3e-15  Score=141.37  Aligned_cols=247  Identities=27%  Similarity=0.468  Sum_probs=186.0

Q ss_pred             CceeEEEe-cCCCCcEEEE-EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-CCc
Q 014433          126 GEVNRARY-MPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQ  202 (424)
Q Consensus       126 ~~v~~~~~-~p~~~~~lat-g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~  202 (424)
                      ..+..+.+ ++++..+++. +..++.+.+|+...         .......+..|...|..++|+|++. .+++++. |+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~  179 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST---------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGT  179 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecC---------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCc
Confidence            36777777 7777634444 34499999999875         1244667888999999999999988 6888875 999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~  281 (424)
                      +++|++...      ..+..+..|...|.+++|+|++..++++++.|+.|++||.+.+..   +. .+..|.... ...|
T Consensus       180 ~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~~~~  249 (466)
T COG2319         180 IKLWDLRTG------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-VSSF  249 (466)
T ss_pred             eEEEEcCCC------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-eEeE
Confidence            999999863      245556669999999999998875665668999999998885442   33 466677665 4489


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|++. ++++++.|+.+++||++.....+..+..|...|.++.|+|++. .+++++.|+.+.+|++.....         
T Consensus       250 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~---------  318 (466)
T COG2319         250 SPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL---------  318 (466)
T ss_pred             CCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce---------
Confidence            99885 6789999999999999975443445567889999999999776 466688888899998876432         


Q ss_pred             CCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          362 GPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       362 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                           ...  ...|...+..+.|.+++..+..++..|+.+.+|++....
T Consensus       319 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         319 -----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             -----EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence                 222  246777789999943324344444688999999998876

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.76  E-value=1.5e-17  Score=143.68  Aligned_cols=213  Identities=21%  Similarity=0.318  Sum_probs=161.2

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC---cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK---SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  253 (424)
                      ...++..+.|.++..+.|++|+.|..|++|.++......   .+..+..+..|...|+.+.|+|++. ++|+|+++|.|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~   90 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF   90 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence            346799999999887789999999999999998765543   5566677888999999999999996 789999999999


Q ss_pred             EEEcC--------C-----CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCE
Q 014433          254 IWDLR--------T-----PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV  320 (424)
Q Consensus       254 i~d~~--------~-----~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v  320 (424)
                      +|-..        +     .+.......+.+|...|..++|+|++. ++++|+.|.++++||++. +.....+..|...|
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yv  168 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYV  168 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc-ceeEeecccccccc
Confidence            99776        2     111222345567999999999999998 699999999999999998 88999999999999


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC------C-cCCCCCeeeEEEcC--CCCCcceEEeCCCCCcEEE
Q 014433          321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE------D-AEDGPPELLFIHGG--HTSKISDFSWNPCEDWVIS  391 (424)
Q Consensus       321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~-~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~  391 (424)
                      ..++|.|.++ ++++-+.|...+++.+......+...      . ...........+..  -......++|+|+|. +++
T Consensus       169 qgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llv  246 (434)
T KOG1009|consen  169 QGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLV  246 (434)
T ss_pred             ceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEE
Confidence            9999999985 68888888877777765443222111      0 01111122222211  123456789999998 666


Q ss_pred             EEe
Q 014433          392 SVA  394 (424)
Q Consensus       392 s~~  394 (424)
                      +.+
T Consensus       247 tPa  249 (434)
T KOG1009|consen  247 TPA  249 (434)
T ss_pred             ccc
Confidence            643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8e-16  Score=124.43  Aligned_cols=251  Identities=17%  Similarity=0.220  Sum_probs=170.4

Q ss_pred             CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cC-----CCceeEE
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GH-----STEGYGL  184 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l  184 (424)
                      +.++..++....|.++|+.++|..   .+|.+|+ ||.|+=|......+...    .++...++  -|     --+|+++
T Consensus        49 ~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~----~K~lwe~~~P~~~~~~evPeINam  120 (325)
T KOG0649|consen   49 PPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLA----TKRLWEVKIPMQVDAVEVPEINAM  120 (325)
T ss_pred             CCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhcc----chhhhhhcCccccCcccCCcccee
Confidence            456777788889999999999983   3566665 59999999876322111    11111111  12     2368899


Q ss_pred             EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      ...|.... ++.++.|+.++-||++++      +..+.+++|++.|.++.--.....+| +|+.||++++||+++.+..+
T Consensus       121 ~ldP~enS-i~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~  192 (325)
T KOG0649|consen  121 WLDPSENS-ILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVS  192 (325)
T ss_pred             EeccCCCc-EEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeE
Confidence            99998775 666668999999999988      45677899999999999855555565 99999999999999987633


Q ss_pred             Ceeeee------cc-CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE
Q 014433          265 PVQSVV------AH-QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       265 ~~~~~~------~~-~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      .+...+      .| ...|.+++-+  .. .|++|+ ...+.+|.+|. .++...+.. ..+|..+.|..+   .+++++
T Consensus       193 ~ie~yk~~~~lRp~~g~wigala~~--ed-WlvCGg-Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d---~vl~~G  263 (325)
T KOG0649|consen  193 MIEPYKNPNLLRPDWGKWIGALAVN--ED-WLVCGG-GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD---CVLIGG  263 (325)
T ss_pred             EeccccChhhcCcccCceeEEEecc--Cc-eEEecC-CCceeEEeccC-CCceEEEec-ccceeEeeeecc---eEEEec
Confidence            222221      11 2346666655  34 365554 56799999998 677777764 678888889764   477788


Q ss_pred             CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      ..+.|.-|.+..               .+...........++..|+-+--.+|..++..+.+.|+
T Consensus       264 ~g~~v~~~~l~G---------------vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  264 EGNHVQSYTLNG---------------VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cccceeeeeecc---------------EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            888899998864               33333333333345555654433356666666667665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=2.3e-15  Score=137.89  Aligned_cols=242  Identities=14%  Similarity=0.154  Sum_probs=155.8

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE-EeCCCcEEEEeCCCCCCCCccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS-GSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      ++++...++.|++|++...       +.......+. +.+....++++|+++ +|++ +..++.|.+|+++....   +.
T Consensus         4 ~y~~~~~~~~I~~~~~~~~-------g~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~---l~   71 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHE-------GALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGA---LT   71 (330)
T ss_pred             EEEEcCCCCCEEEEEECCC-------CceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCc---eE
Confidence            4555577899999999641       1122333443 345677899999988 4554 45688999999973211   11


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT  297 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~  297 (424)
                      ...... .......++++|+++.++++...++.|.+|++..... ...+... .+.....+++++|++++++++...++.
T Consensus        72 ~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~  149 (330)
T PRK11028         72 FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDR  149 (330)
T ss_pred             Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCE
Confidence            122111 2335678999999998887776799999999975332 1222222 233456788999999987777778899


Q ss_pred             EEEEECCCCCCcc------eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433          298 VKLFDLRKISTAL------HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG  371 (424)
Q Consensus       298 i~iwd~~~~~~~~------~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      |.+||+.+.+...      .... .......++|+|+++.++++...++.|.+|++......          ...+....
T Consensus       150 v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~----------~~~~~~~~  218 (330)
T PRK11028        150 IRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE----------IECVQTLD  218 (330)
T ss_pred             EEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC----------EEEEEEEe
Confidence            9999998633221      1111 23456789999999754455455899999999742110          01111111


Q ss_pred             C------CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          372 G------HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       372 ~------h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .      +......+.++|++++++++...++.|.+|++..
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            1      1122346889999996555545688999999964

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.74  E-value=1.6e-16  Score=131.86  Aligned_cols=260  Identities=18%  Similarity=0.204  Sum_probs=185.3

Q ss_pred             CceeEEEecC---CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          126 GEVNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       126 ~~v~~~~~~p---~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ..++.+.|.-   ++...++-+..+|.|.+|..........    ..++....-......++.|++.+.. ++++..+|.
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~  144 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGS  144 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhhhhheeeeEEEeeccCce-EEEEcCCCc
Confidence            3556666653   3433667778889999999876221111    1111111111113568899998884 888889999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +.+-+...    ..++..+.++.|.-+++...|+...++++.+|++|+.+..||+|.++. ......+.|...|.+|.-+
T Consensus       145 ~~~v~~t~----~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss  219 (339)
T KOG0280|consen  145 ISGVYETE----MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSS  219 (339)
T ss_pred             EEEEecce----eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecC
Confidence            98555433    233445578889999999999999999999999999999999996552 2233356789999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      |..++.++||+.|-.|++||.|+.++|+..-.. .+.|+.+.++|.-.. +|+++-..| .+|-+.+....+.       
T Consensus       220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~-------  290 (339)
T KOG0280|consen  220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF-------  290 (339)
T ss_pred             CCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch-------
Confidence            988889999999999999999998999877664 589999999996543 355555555 8888887654321       


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEE-EEecCCc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQ-IWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~-vw~~~~~  407 (424)
                        ...+..+..|.+-.+.-.|..... +|+|++ .|+.++ +|-.-++
T Consensus       291 --~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  291 --QIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             --heeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccC
Confidence              135666778888888888855544 677765 677755 8865443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.8e-17  Score=140.93  Aligned_cols=202  Identities=17%  Similarity=0.185  Sum_probs=153.2

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  208 (424)
                      .+++|+++|. .+|+|+.||++|||+...          .........|..+|.+|.|+|+++ +|++-+.| ..+||++
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps----------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~  214 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS----------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSV  214 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCc----------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEe
Confidence            6789999886 899999999999999876          455667778999999999999998 79999999 9999999


Q ss_pred             CCCCCCCcccceeeeecCCccEeeEEEecCC---C-cEEEEEeCCCeEEEEEcCCCCCCC--CeeeeeccCCCeeEEEec
Q 014433          209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---E-YLFGSVGDDQYLLIWDLRTPSVSK--PVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~~~~s~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~v~~v~~~  282 (424)
                      +++.......+    ..-......+.|+.++   . .+++....-+.|+.||+.......  +......-...|++++.+
T Consensus       215 ~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  215 NTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             ccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            98844332221    1123345667777654   2 233334456678888776433211  111222234579999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ++|+ ++|.|+.||.|.|++..+.......-+.|...|+.+.|+|+.+ .+++.+.|..+.|..+..
T Consensus       291 ~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  291 DDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEee
Confidence            9998 7999999999999999986666666678999999999999986 688899999999888765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=6.5e-17  Score=146.13  Aligned_cols=204  Identities=18%  Similarity=0.282  Sum_probs=162.5

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      +...+.|...|+.+.|+..|. +||+...   ...|.|+++..          ...+..++...+.|.++.|+|... +|
T Consensus       514 v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK----------~~sQ~PF~kskG~vq~v~FHPs~p-~l  581 (733)
T KOG0650|consen  514 VCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSK----------RKSQSPFRKSKGLVQRVKFHPSKP-YL  581 (733)
T ss_pred             eEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccc----------ccccCchhhcCCceeEEEecCCCc-eE
Confidence            556789999999999999997 6776554   35899999987          222334555667799999999887 56


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ++++. ..|+|||+....      .++.+......|..++.+|.|.++| .|+.|+.+..||+.-..  ++.+++..|..
T Consensus       582 fVaTq-~~vRiYdL~kqe------lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--kPyk~lr~H~~  651 (733)
T KOG0650|consen  582 FVATQ-RSVRIYDLSKQE------LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--KPYKTLRLHEK  651 (733)
T ss_pred             EEEec-cceEEEehhHHH------HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--chhHHhhhhhh
Confidence            66654 689999997642      2333444567899999999999887 78999999999998654  47888889999


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--------CCCcceEecCCCCC----EEEEEEcCCCCcEEEEEECCCeE
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--------ISTALHTFDSHKEE----VFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--------~~~~~~~~~~h~~~----v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      .+++|+||+.-+ +|++|+.||++.||--+-        .-.|+..+.+|...    |..+.|+|..+ .|++++.||+|
T Consensus       652 avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~ti  729 (733)
T KOG0650|consen  652 AVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTI  729 (733)
T ss_pred             hhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceE
Confidence            999999999877 899999999999985331        12367788888765    99999999998 58899999999


Q ss_pred             EEe
Q 014433          343 MVW  345 (424)
Q Consensus       343 ~iw  345 (424)
                      ++|
T Consensus       730 rlf  732 (733)
T KOG0650|consen  730 RLF  732 (733)
T ss_pred             Eee
Confidence            998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=4.3e-16  Score=139.28  Aligned_cols=254  Identities=20%  Similarity=0.288  Sum_probs=176.2

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEec-----CCCCceEEEEeCCCcEE
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-----KFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~dg~i~  204 (424)
                      ...++-.+..++.-  ....+++|+.....      ....++....-......|-+|+     +.+- -|+.|-.-|.|+
T Consensus       128 ~~~~~~~gd~lcFn--vg~~lyv~~~~g~~------~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq  198 (636)
T KOG2394|consen  128 NTNQSGKGDRLCFN--VGRELYVYSYRGAA------DLSKPIDKREYKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQ  198 (636)
T ss_pred             eccccCCCCEEEEe--cCCeEEEEEccCcc------hhccchhhhcccCCCCceecccccccCCCCc-ceEEeeccCceE
Confidence            33444455543332  23468888887411      1122222211122223334442     3333 377888889999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC-----------------------
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-----------------------  261 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~-----------------------  261 (424)
                      +.|.......+-+.  ......+..|+++.|-|.++.+|+++-.+|.+++||.....                       
T Consensus       199 ~idp~~~~~sklfn--e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  199 LIDPINFEVSKLFN--EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             EecchhhHHHHhhh--hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence            99876522111010  00111347899999999999999999999999999864210                       


Q ss_pred             --CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          262 --VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       262 --~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                        ...|+..+....+.|+.++|+|+|+ +||+.+.||.++|||..+ .+.+..++.-=+...|++|||||+ ++++|+.|
T Consensus       277 k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGED  353 (636)
T KOG2394|consen  277 KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGED  353 (636)
T ss_pred             cccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence              0023333333456889999999998 599999999999999997 566666665567899999999997 79999999


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-----------------------------------
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-----------------------------------  384 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------------------------------  384 (424)
                      ..|.||.+...              +++..-+||.++|+.|+|.|                                   
T Consensus       354 DLVtVwSf~er--------------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~  419 (636)
T KOG2394|consen  354 DLVTVWSFEER--------------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA  419 (636)
T ss_pred             ceEEEEEeccc--------------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence            99999999764              67888899999999999983                                   


Q ss_pred             C------------CCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          385 C------------EDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       385 ~------------~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                      .            -.|.|.+.+.|-.+.+||+....+..
T Consensus       420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             CCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence            0            14668899999999999999887766

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=141.96  Aligned_cols=266  Identities=18%  Similarity=0.286  Sum_probs=183.6

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC------------CCCCCCc------EEEe
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL------------DGACSPD------LRLR  175 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~------------~~~~~~~------~~~~  175 (424)
                      .++++++.+.|+...+.|..+|+|++++|||...-.|++||+.........            .......      ..+.
T Consensus        40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            467788889999999999999999999999999999999999864332210            0001111      1111


Q ss_pred             cCC-----------CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEE
Q 014433          176 GHS-----------TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG  244 (424)
Q Consensus       176 ~h~-----------~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  244 (424)
                      -|.           .....++++.-... |++++....|+=++++.+..      +..+....+.++++..++.+. ||+
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrf------L~P~~~~~~~lN~v~in~~hg-Lla  191 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRF------LNPFETDSGELNVVSINEEHG-LLA  191 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccc------ccccccccccceeeeecCccc-eEE
Confidence            121           12345555554443 55555566788889988743      333444568999999999875 888


Q ss_pred             EEeCCCeEEEEEcCCCCCCCCeee---eeccCC-----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC
Q 014433          245 SVGDDQYLLIWDLRTPSVSKPVQS---VVAHQS-----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH  316 (424)
Q Consensus       245 s~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~-----~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h  316 (424)
                      +|+.+|.|-.||.|.......+..   +..|..     .|+++.|+.+|- .+++|+.+|.|.|||+|.....+..-...
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~  270 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGY  270 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCC
Confidence            999999999999998664222211   122333     499999998876 69999999999999999843333333444


Q ss_pred             CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      .-+|..+.|.+.+..--+.......++|||-.++..              .... .....++++++-|++. ++.++.++
T Consensus       271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--------------~asi-Ept~~lND~C~~p~sG-m~f~Ane~  334 (703)
T KOG2321|consen  271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--------------MASI-EPTSDLNDFCFVPGSG-MFFTANES  334 (703)
T ss_pred             ccceeeecccccCCCceEEecchHHhhhcccccCCc--------------eeec-cccCCcCceeeecCCc-eEEEecCC
Confidence            568999999876433233344456799999887642              2222 2244599999999888 78888888


Q ss_pred             CcEEEEec
Q 014433          397 NILQIWQM  404 (424)
Q Consensus       397 g~i~vw~~  404 (424)
                      +.+..|=+
T Consensus       335 ~~m~~yyi  342 (703)
T KOG2321|consen  335 SKMHTYYI  342 (703)
T ss_pred             CcceeEEc
Confidence            87766544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.73  E-value=6.2e-16  Score=129.89  Aligned_cols=226  Identities=13%  Similarity=0.256  Sum_probs=175.6

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  253 (424)
                      +.--..+|+|.+|++++. .+|.+-....|.||.....+   ..+....+..|...|+.|.|+|..+.+ ++|+.|..-+
T Consensus         6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~---~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnay   80 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD---LWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAY   80 (361)
T ss_pred             eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC---CceeceehhhhCcceeEEeecCCCCce-eEccCCCCcc
Confidence            334457899999999988 59999999999999987653   235667788899999999999998765 5999999999


Q ss_pred             EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCCC
Q 014433          254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                      ||....+...++...+..+...+++|.|+|... .||+|+....|.||-+.....   ..+.-+.+.+.|+++.|+|++-
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence            999977666778778888999999999999776 699999999999998765211   2233445688999999999984


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCC----CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTP----EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                       +|++|+.|+.++||..--.......    ......-.+++..+....+.|.++.|+|+|. .|+=.+.|..+.+=|...
T Consensus       160 -LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  160 -LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             -eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCC
Confidence             8999999999999976432211111    1111111244555555677899999999999 688889999999988766


Q ss_pred             c
Q 014433          407 N  407 (424)
Q Consensus       407 ~  407 (424)
                      .
T Consensus       238 p  238 (361)
T KOG1523|consen  238 P  238 (361)
T ss_pred             C
Confidence            5

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=2.1e-15  Score=129.95  Aligned_cols=256  Identities=15%  Similarity=0.169  Sum_probs=185.4

Q ss_pred             cCCceeEEEecCCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      -...|..++|.-++..-+..+. .+..+..+.+....-..    .............+|.++....   ..|++|-.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s----~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~  126 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS----SLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGN  126 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCcccc----ccccccccccccccccchhhcC---CEEEEEecCCc
Confidence            3446667777765543344443 56667766666521111    0111123445566777777642   35999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC--CeEEEEEcCCCCCCCCeeeeec---------
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVA---------  271 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~---------  271 (424)
                      +.+|....+....  ..+..+.. ...+..+.-++..++++|+|+..  ..+.|||+.+...   +..-+.         
T Consensus       127 l~~~~~k~~d~hs--s~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---iw~aKNvpnD~L~Lr  200 (412)
T KOG3881|consen  127 LQVRHDKSGDLHS--SKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---IWSAKNVPNDRLGLR  200 (412)
T ss_pred             EEEEeccCCcccc--ccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee---eeeccCCCCccccce
Confidence            9999998654221  12222332 35677888888889999999998  8899999988632   222111         


Q ss_pred             cCCCeeEEEecCC-CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          272 HQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       272 ~~~~v~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      -.-.++.+.|-+. -.+.||+++.-+.+++||.+...+|+..+..-..+|+++...|.+. ++++|..-|.+..||++.+
T Consensus       201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccCc
Confidence            1224567788764 1457999999999999999998899999999999999999999995 7899999999999999986


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .             .+...+.+-.+.|+++..+|.++ +++++|-|..|||+|+.+.
T Consensus       280 k-------------l~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  280 K-------------LLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             e-------------eeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence            3             22233778889999999999999 7999999999999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=2.8e-16  Score=140.43  Aligned_cols=248  Identities=17%  Similarity=0.270  Sum_probs=167.7

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEe-CCCCCCCC-CCCCCCCCcEEEecCCCceeEEEec-CCCCceE
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFD-YSKHPSKP-PLDGACSPDLRLRGHSTEGYGLSWS-KFKEGHL  194 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~-~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l  194 (424)
                      +.++-.|..-|.|+.|+.... ++.+ +.|..+.+|. +.....+. .......+.   .-|..   ...-- ..+...|
T Consensus         7 ~~~k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt---~~h~~---~rs~~~g~~~d~~   78 (737)
T KOG1524|consen    7 ICKKNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPT---DMHLG---GRSSGGGKGSDTL   78 (737)
T ss_pred             hhhccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCCcccCCc---ccccc---ccccCCCCCcceE
Confidence            334446777778999998665 4444 4566666655 43311110 000000000   00110   00000 0122368


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      +.++.||.+.+.+-...       .......|.+.+.+-.|+|+|.-++ +++.||.|++|.-...-    ..++.....
T Consensus        79 ~i~s~DGkf~il~k~~r-------VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGML----RStl~Q~~~  146 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSAR-------VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGML----RSTVVQNEE  146 (737)
T ss_pred             EEEcCCceEEEecccch-------hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchH----HHHHhhcCc
Confidence            99999999999875432       2344567999999999999998665 99999999999854321    122234577


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      +|+|++|.|+.+.++.+.+  +.+.|=.+.. ...+..+++|.+-|.++.|++... ++++|+.|-..+|||-..     
T Consensus       147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G-----  217 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG-----  217 (737)
T ss_pred             eeEEEEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC-----
Confidence            8999999999988776654  5677777765 455667889999999999999985 899999999999999764     


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                ..++....|..+|++++|+|+ . +++.++. +++++=.++.|
T Consensus       218 ----------~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~G  257 (737)
T KOG1524|consen  218 ----------ANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVG  257 (737)
T ss_pred             ----------cccccCChhccceeeeeeccc-c-ceeeeee-eeeeecCCCcc
Confidence                      667888899999999999999 4 4666553 45665444444

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=4.4e-16  Score=140.03  Aligned_cols=221  Identities=19%  Similarity=0.217  Sum_probs=155.8

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      .+...-+|.++|.|+++.+.+. .+.+|+.||+|+.|++..................+.||.+.|+.+++++... .|++
T Consensus       336 pi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Lls  413 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLS  413 (577)
T ss_pred             eeEEEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceee
Confidence            3455568999999999999886 7999999999999988732111111222344567889999999999999777 6999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-----
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----  271 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----  271 (424)
                      ++.||++++|+...... ..+.   ... -.+...++.+-.....+.++...-+.-.++++....   .+..+..     
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~---~~~-e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s---~~~~~~s~~~~~  485 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFG---EPK-EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS---DLLIFESSASPG  485 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccC---Ccc-ccCCcceEeeccchhHhhhhhcccccccchhhhhhh---heeeccccCCCc
Confidence            99999999999865532 1111   111 122334455443332222222223333333333322   2222211     


Q ss_pred             --cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          272 --HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       272 --~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                        ....++-+.++|.+. +.+++..|+.|+++|..+ +.+++....|...++++++.|+|. +|++++.|+.+++|.+..
T Consensus       486 ~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  486 PRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ccccCccceEEecCCCC-eeEecccCCceecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence              124577889999887 788999999999999998 899999999999999999999997 799999999999999865


Q ss_pred             C
Q 014433          350 I  350 (424)
Q Consensus       350 ~  350 (424)
                      .
T Consensus       563 k  563 (577)
T KOG0642|consen  563 K  563 (577)
T ss_pred             h
Confidence            3

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=3.2e-15  Score=141.30  Aligned_cols=213  Identities=15%  Similarity=0.131  Sum_probs=143.2

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeee
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIF  223 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~  223 (424)
                      +..|++||...           .....+..|...+.+.+|+|++. .|+.++.+   ..|++||+.++..    ..+..+
T Consensus       183 ~~~i~i~d~dg-----------~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~----~~l~~~  246 (429)
T PRK01742        183 PYEVRVADYDG-----------FNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR----KVVASF  246 (429)
T ss_pred             eEEEEEECCCC-----------CCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce----EEEecC
Confidence            46899999876           12345677888899999999998 56665543   4699999976532    112222


Q ss_pred             ecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014433          224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF  301 (424)
Q Consensus       224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw  301 (424)
                      .+   ....++|+|+++.++.+.+.+|.+.||  |+.++.    ...+..+...+....|+|+|+.+++++..+|...||
T Consensus       247 ~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        247 RG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             CC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence            22   344689999998777666678876655  555433    344555667788999999999766666678888999


Q ss_pred             ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433          302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS  381 (424)
Q Consensus       302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  381 (424)
                      ++...+.....+ .+..  ....|+|+++ .|+..+.++ +.+||+..+..            ..+  ...+  ....+.
T Consensus       320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~------------~~l--t~~~--~~~~~~  378 (429)
T PRK01742        320 RMSASGGGASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGST------------EVL--SSTF--LDESPS  378 (429)
T ss_pred             EEECCCCCeEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCe------------EEe--cCCC--CCCCce
Confidence            876533333333 3333  4678999997 465666565 66699876532            111  1111  235678


Q ss_pred             eCCCCCcEEEEEeCCCcEEEEec
Q 014433          382 WNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       382 ~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      |+|+++ +|+.++.++...+|.+
T Consensus       379 ~sPdG~-~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        379 ISPNGI-MIIYSSTQGLGKVLQL  400 (429)
T ss_pred             ECCCCC-EEEEEEcCCCceEEEE
Confidence            999999 5777777888887775

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=1.4e-13  Score=126.24  Aligned_cols=304  Identities=12%  Similarity=0.174  Sum_probs=198.4

Q ss_pred             EEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEe
Q 014433           66 MILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT  145 (424)
Q Consensus        66 ~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~  145 (424)
                      +++|+++. +..+.|++.+++-                        ..+++.......-......++++|++..+.++..
T Consensus         2 ~~vgsy~~-~~~~gI~~~~~d~------------------------~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e   56 (345)
T PF10282_consen    2 LYVGSYTN-GKGGGIYVFRFDE------------------------ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNE   56 (345)
T ss_dssp             EEEEECCS-SSSTEEEEEEEET------------------------TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEET
T ss_pred             EEEEcCCC-CCCCcEEEEEEcC------------------------CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEc
Confidence            67899887 4557788887731                        2456777777777778888999999886555544


Q ss_pred             ---CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014433          146 ---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI  222 (424)
Q Consensus       146 ---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  222 (424)
                         ..|.|..|.+....      +....+............++.+|++..++++...+|.|.++++..............
T Consensus        57 ~~~~~g~v~~~~i~~~~------g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~  130 (345)
T PF10282_consen   57 GSGDSGGVSSYRIDPDT------GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR  130 (345)
T ss_dssp             TSSTTTEEEEEEEETTT------TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred             cccCCCCEEEEEECCCc------ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence               36899999988621      122333344434455678999999985444445699999999987522211111111


Q ss_pred             ee--------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeee-eccCCCeeEEEecCCCCeEEEEE
Q 014433          223 FK--------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV-VAHQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       223 ~~--------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg  292 (424)
                      ..        .......++.++|+++.++++.-....|.+|++..... ..+...+ .......+.++|+|++++++++.
T Consensus       131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence            10        12345788999999998887776777899999987552 1111222 23456788999999999878888


Q ss_pred             eCCCcEEEEECCCC-CC--cceEecC------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          293 STDKTVKLFDLRKI-ST--ALHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       293 ~~dg~i~iwd~~~~-~~--~~~~~~~------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      -.++.|.+|++... +.  .+..+..      .......|+++|+++.++++....+.|.+|++....          +.
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----------g~  280 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----------GT  280 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----------TT
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----------Cc
Confidence            88999999999831 21  1222211      122678999999998777777778899999994321          11


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC--CccCC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA--ENIYH  410 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~--~~~~~  410 (424)
                      ...+............++++|++++++++...++.|.+|++.  ++.+.
T Consensus       281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            133333333334478999999999877777788899999874  55443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=8.7e-15  Score=125.01  Aligned_cols=248  Identities=16%  Similarity=0.245  Sum_probs=161.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      .-.+..++|++. -..+|++..|-.|++|+-..           .....++ .....|++++|-|.+...|+.|+. +-|
T Consensus        98 ~~dlr~~aWhqH-~~~fava~nddvVriy~kss-----------t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gI  164 (445)
T KOG2139|consen   98 EIDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-----------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGI  164 (445)
T ss_pred             hcceeeEeechh-hhhhhhhccCcEEEEeccCC-----------CCCceecchhhcceeEEEeccCCcceeeeeec-cee
Confidence            456788999984 34688899999999999765           1112233 244679999999998877888776 558


Q ss_pred             EEEeCCCCCCCCc------ccc--eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          204 CLWDINAAPKNKS------LEA--MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       204 ~iwd~~~~~~~~~------~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      ++|..........      ...  +....+| .+|++++|++++..++-+.-.|..|.|||..++.. .++.  ....+.
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg  240 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGG  240 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCc
Confidence            8998754322111      011  1122334 68999999999986654445788899999999874 2333  234567


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      +.-+.|+|++.+ |.++.-|+..++|.............+ .+.|...+|+|.|+.+|.+++..-  ++|.+....+...
T Consensus       241 ~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~  316 (445)
T KOG2139|consen  241 FSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSV  316 (445)
T ss_pred             eeeEEEcCCCCE-EEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCcc
Confidence            889999999996 666778999999966553443333333 559999999999998888877654  4455443332221


Q ss_pred             CCCcCCC-CCeeeEEE------cC---CCCCcceEEeCCCCCcEEEEE
Q 014433          356 PEDAEDG-PPELLFIH------GG---HTSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       356 ~~~~~~~-~~~~~~~~------~~---h~~~v~~~~~~~~~~~~l~s~  393 (424)
                      ....... ...++..+      .+   -.+.+.+++|.|.|.|+.++-
T Consensus       317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            1111100 00111111      11   135678899999999754443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=6.7e-15  Score=139.08  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=144.1

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..|...+...+|+|+++. ||..+.+   ..|++||+.+        +....+..+.+|   ...++|+|++..++++.+
T Consensus       200 t~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~t--------g~~~~l~~~~g~---~~~~~wSPDG~~La~~~~  267 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRS--------GARKVVASFRGH---NGAPAFSPDGSRLAFASS  267 (429)
T ss_pred             ccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCC--------CceEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence            356778999999999985 5554432   4799999876        111222223333   346899999984344445


Q ss_pred             CCCcEEEE--eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          199 DDAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       199 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      .+|.+.||  |+.++.       ...+..+...+....|+|+++.++.++..+|...||++......  ...+ .+..  
T Consensus       268 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~~~--  335 (429)
T PRK01742        268 KDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GGRG--  335 (429)
T ss_pred             cCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cCCC--
Confidence            78876666  554331       23344466678899999999877766667888899987653321  2222 3333  


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      .+.+|+|+++. |+.++.++ +.+||+.+ +........  ....++.|+|+++ +|+.++.++.+.+|++....     
T Consensus       336 ~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~-g~~~~lt~~--~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~-----  404 (429)
T PRK01742        336 YSAQISADGKT-LVMINGDN-VVKQDLTS-GSTEVLSST--FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSAD-----  404 (429)
T ss_pred             CCccCCCCCCE-EEEEcCCC-EEEEECCC-CCeEEecCC--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECC-----
Confidence            46789999995 55555554 66699987 333222122  2335688999997 67777788888888764311     


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                             ......+.+|.+.+...+|+|-
T Consensus       405 -------G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        405 -------GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             -------CCceEEccCCCCCCCCcccCCC
Confidence                   1345556677888899999985

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=2.7e-16  Score=138.15  Aligned_cols=231  Identities=16%  Similarity=0.270  Sum_probs=176.5

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      ....+.|..+|. .++.|+..|.|..+|..+          ......+. -...|.++.|..+.. +||++ ....+.||
T Consensus       131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t----------~~L~~Ei~-v~Etv~Dv~~LHneq-~~AVA-QK~y~yvY  196 (545)
T KOG1272|consen  131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVT----------KKLHFEIN-VMETVRDVTFLHNEQ-FFAVA-QKKYVYVY  196 (545)
T ss_pred             CCeeeeecCCcc-EEEecCCccceeeeeccc----------ceeeeeee-hhhhhhhhhhhcchH-HHHhh-hhceEEEe
Confidence            345688999887 566788899999999987          23222332 345788999987655 56555 55789999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE  286 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~  286 (424)
                      |-...    .   +..+.. ...|..+.|.|.. +||++++..|.++.-|+.+++.   +..+....+.+..++-+|.+.
T Consensus       197 D~~Gt----E---lHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~Na  264 (545)
T KOG1272|consen  197 DNNGT----E---LHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNA  264 (545)
T ss_pred             cCCCc----E---Eeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccc
Confidence            96532    1   222332 3578999999986 6889999999999999999886   555555678889999999887


Q ss_pred             eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433          287 WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                       ++-+|...|+|.+|.... ..|+..+..|.++|.+|++.+.|. ++||++.|..++|||++....             +
T Consensus       265 -Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~q-------------l  328 (545)
T KOG1272|consen  265 -VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQ-------------L  328 (545)
T ss_pred             -eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccc-------------c
Confidence             799999999999999987 788888999999999999999995 899999999999999998642             2


Q ss_pred             eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      .....  ..+...+++|..|  +||. |....|.||.=
T Consensus       329 ~t~~t--p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d  361 (545)
T KOG1272|consen  329 HTYRT--PHPASNLSLSQKG--LLAL-SYGDHVQIWKD  361 (545)
T ss_pred             ceeec--CCCcccccccccc--ceee-ecCCeeeeehh
Confidence            22222  2346778888665  4554 45567999964

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1.7e-15  Score=123.91  Aligned_cols=165  Identities=19%  Similarity=0.310  Sum_probs=124.2

Q ss_pred             CceeEEEecCC-CCc-eEEEEeCCCcEEEEeCCCCCCCCc----ccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433          179 TEGYGLSWSKF-KEG-HLLSGSDDAQICLWDINAAPKNKS----LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (424)
Q Consensus       179 ~~v~~l~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  252 (424)
                      +.+.+..|... +.. +|++|..+|.+.+||+.++...-.    .+.......|..+|.++.+.+.-..= ++|+.+..+
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgga~dkl  229 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGGADDKL  229 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCCccccc
Confidence            45666664332 222 467788999999999988633211    12233455699999999998754433 378888889


Q ss_pred             EEEEcCCCCCCCCee-eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          253 LIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      ..|.+......-++. ......-.|..+..-|+++ ++||++.|+.|+||..|+ ..++..+..|+..|++++|+|+.+ 
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~-  306 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCE-  306 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCc-
Confidence            999987643211221 1222344688889999998 899999999999999999 689999999999999999999975 


Q ss_pred             EEEEEECCCeEEEeeC
Q 014433          332 ILASCCLGRRLMVWDL  347 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~  347 (424)
                      ++|+++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            8999999999999986

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.5e-12  Score=112.10  Aligned_cols=299  Identities=12%  Similarity=0.168  Sum_probs=196.4

Q ss_pred             EEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEE
Q 014433           64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT  143 (424)
Q Consensus        64 ~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lat  143 (424)
                      +.+++||+|... ..-|+++.+.-+                        .+++...++..+.+.++-|+|+|+++.+.+.
T Consensus         3 ~~~YiGtyT~~~-s~gI~v~~ld~~------------------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v   57 (346)
T COG2706           3 QTVYIGTYTKRE-SQGIYVFNLDTK------------------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVV   57 (346)
T ss_pred             eEEEEeeecccC-CCceEEEEEeCc------------------------ccccchhhhccccCCCceEEECCCCCEEEEE
Confidence            678899998553 456787777422                        3456666777888899999999988755554


Q ss_pred             EeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE-eCCCcEEEEeCCCCCCCCcccce
Q 014433          144 KTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-SDDAQICLWDINAAPKNKSLEAM  220 (424)
Q Consensus       144 g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  220 (424)
                      ...  .|.|..|.++....      ....+........+.+.++.+++++ +++++ ...|.|.++-++......   ..
T Consensus        58 ~~~~~~ggvaay~iD~~~G------~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~---~~  127 (346)
T COG2706          58 NEPGEEGGVAAYRIDPDDG------RLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQ---PV  127 (346)
T ss_pred             EecCCcCcEEEEEEcCCCC------eEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccc---cc
Confidence            444  68888888876211      1111111122223347899999998 45555 457899999997753322   12


Q ss_pred             eeeecCCcc----------EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEE
Q 014433          221 QIFKVHEGV----------VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA  290 (424)
Q Consensus       221 ~~~~~~~~~----------v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  290 (424)
                      .....|.+.          +....+.|++++++++.-.--.|.+|++..+.........-......+.|.|+|+++...+
T Consensus       128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~  207 (346)
T COG2706         128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL  207 (346)
T ss_pred             eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE
Confidence            122234444          8889999999887766555567999999966532111111234567899999999997666


Q ss_pred             EEeCCCcEEEEECCCCCCcceEecC---------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          291 TGSTDKTVKLFDLRKISTALHTFDS---------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       291 tg~~dg~i~iwd~~~~~~~~~~~~~---------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +.--+++|.+|........+..++.         .......|..+|+|+.+.|+--....|.+|.+.....         
T Consensus       208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g---------  278 (346)
T COG2706         208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG---------  278 (346)
T ss_pred             EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---------
Confidence            6777999999998874333333332         2456788999999985444444455788888865321         


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       ...++.....+...-.++.+++.+++|+++.-.+..|.+|.....
T Consensus       279 -~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         279 -KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             -EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             113333344445557899999999976666666677999987643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.4e-15  Score=128.63  Aligned_cols=175  Identities=15%  Similarity=0.227  Sum_probs=137.6

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                      ...+.+|.+.|.+|.|+.++. +|++|+.|..+++|++...-..+.-+++.... .|.+.|.|++|...+..+ .+|+.+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~-~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL-YSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE-ecCCCc
Confidence            345778999999999999876 89999999999999997654433334555444 355899999999877655 599999


Q ss_pred             CeEEEEEcCCCCCCCCeeee--eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEE
Q 014433          250 QYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGW  325 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~  325 (424)
                      ++|.+.|+.+.+.   +..+  ....+.|+.+..+|... +|++.+.++.|.+||.|....++..+.  ........+.|
T Consensus       127 ~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  127 GTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             ceeEeeeccccee---eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            9999999998664   3332  22345899999999865 799999999999999997443444433  23456788999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +|..+.+|++.+..+-+.+||++...
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             cCCCceeEEeccccCCCCceeecccc
Confidence            99999999999999999999998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=3.9e-13  Score=115.42  Aligned_cols=188  Identities=17%  Similarity=0.301  Sum_probs=138.2

Q ss_pred             EEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014433          140 LIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (424)
Q Consensus       140 ~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  217 (424)
                      ++|..+.+  ..+++++..+          ...+..+. ...+|.++.++.+   .|+++-.+ .|+|||++..+...++
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk----------~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKK----------KTTICEIF-FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTI  122 (391)
T ss_pred             eeEEEecCCCceEEEEEccc----------CceEEEEe-cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhh
Confidence            55554443  3588888876          22233333 5678999998752   57777665 4999999876443332


Q ss_pred             cceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC
Q 014433          218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK  296 (424)
Q Consensus       218 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg  296 (424)
                         .....+...+.++++++.+.++..-++ ..|.|.+||+.+   .+++..+.+|++.+-|++|+++|. +|||++..|
T Consensus       123 ---~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~-llATASeKG  195 (391)
T KOG2110|consen  123 ---ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGT-LLATASEKG  195 (391)
T ss_pred             ---hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCC-EEEEeccCc
Confidence               223345566777777766655543333 468999999988   446888889999999999999998 899999999


Q ss_pred             c-EEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          297 T-VKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       297 ~-i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      + ||||.+.+ ++.+..|.-.  ...|.+++|+|+++ +|++.+..++|+||.+....
T Consensus       196 TVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  196 TVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence            6 89999988 6777777632  34689999999996 89999999999999997654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.1e-13  Score=116.47  Aligned_cols=238  Identities=13%  Similarity=0.213  Sum_probs=155.4

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE-EEeCC------Cc
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL-SGSDD------AQ  202 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~d------g~  202 (424)
                      .++|+.|.. .+++|..+| .+||+++....        ........-.-.+..+-|-   .++|+ +|+.+      ..
T Consensus        10 svs~NQD~S-cFava~~~G-friyn~~P~ke--------~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNk   76 (346)
T KOG2111|consen   10 SVSFNQDHS-CFAVATDTG-FRIYNCDPFKE--------SASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNK   76 (346)
T ss_pred             EEEEccCCc-eEEEEecCc-eEEEecCchhh--------hhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCce
Confidence            489998775 788877666 89999876111        0011111111122222232   12333 33332      46


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCeeEEE
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLA  280 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~  280 (424)
                      |.|||=...      .++..+. ...+|.++.+.++.  ++ +. ..+.|+||...+.-  +.++.+  ......+.+++
T Consensus        77 viIWDD~k~------~~i~el~-f~~~I~~V~l~r~r--iV-vv-l~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   77 VIIWDDLKE------RCIIELS-FNSEIKAVKLRRDR--IV-VV-LENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             EEEEecccC------cEEEEEE-eccceeeEEEcCCe--EE-EE-ecCeEEEEEcCCCh--hheeeeecccCCCceEeec
Confidence            999993222      2233333 56789999998752  43 33 46889999987322  123332  22234466665


Q ss_pred             ecCCCCeEEEE-EeCCCcEEEEECCCCCC-cceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCC
Q 014433          281 FNPFNEWILAT-GSTDKTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPE  357 (424)
Q Consensus       281 ~~~~~~~~l~t-g~~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~  357 (424)
                      -+.... +||. |..-|.|.|-|+..... +...+.+|.+.|.+++.+.+| .++||+|..|+ |||||..++..     
T Consensus       144 ~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~-----  216 (346)
T KOG2111|consen  144 PTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL-----  216 (346)
T ss_pred             CCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE-----
Confidence            554444 4544 55679999999987433 467889999999999999999 58999999997 89999998743     


Q ss_pred             CcCCCCCeeeEEEc-C-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          358 DAEDGPPELLFIHG-G-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       358 ~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                               +..++ | ....|.+++|+|+.. +|+++|+-|+|+|+.+......
T Consensus       217 ---------l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  217 ---------LQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             ---------eeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCC
Confidence                     33322 2 245699999999999 6888899999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.7e-13  Score=116.06  Aligned_cols=210  Identities=16%  Similarity=0.269  Sum_probs=140.1

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC----CCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP----LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      -+..|+|++|-|.+..-||.|+.. -|.||..+...+...    .......+..-.+| ..|+++.|+++|. .+++++.
T Consensus       139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~  215 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASF  215 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeeccc
Confidence            457899999999887789998865 599999876332221    01111223333455 6899999999998 5777664


Q ss_pred             -CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       200 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                       |..|.|||+.++....    +.  ....+.++-+.|+|++..+| ++..|+..++|........   .......+.|..
T Consensus       216 gsssi~iWdpdtg~~~p----L~--~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~---erw~lgsgrvqt  285 (445)
T KOG2139|consen  216 GSSSIMIWDPDTGQKIP----LI--PKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTK---ERWILGSGRVQT  285 (445)
T ss_pred             CcceEEEEcCCCCCccc----cc--ccCCCceeeEEEcCCCCEEE-Eecccceeeeehhccccee---cceeccCCceee
Confidence             7789999999885532    11  12356788999999998777 6778999999976554321   122223558999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------ceEe-----cC----CCCCEEEEEEcCCCCcEEEE
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------LHTF-----DS----HKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------------~~~~-----~~----h~~~v~~~~~sp~~~~~l~s  335 (424)
                      .+|+|.|+++|.+.+..-  ++|.+.-.+++              +..+     ..    -.+.+.+++|.|.|. +||+
T Consensus       286 acWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav  362 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAV  362 (445)
T ss_pred             eeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEE
Confidence            999999998888876544  44444321111              0000     11    146789999999997 5666


Q ss_pred             EECCC--------eEEEeeCCC
Q 014433          336 CCLGR--------RLMVWDLSR  349 (424)
Q Consensus       336 ~~~dg--------~i~iwd~~~  349 (424)
                      .-..+        .|.+||.+.
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEcCCchhhhhhhhhhhhcccc
Confidence            54433        256677765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.9e-13  Score=128.44  Aligned_cols=221  Identities=11%  Similarity=0.111  Sum_probs=145.7

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ..|.++|...           .....+..|...+.+.+|+|+|+ .|+..+.   +..|.+||+.++..       ..+.
T Consensus       182 ~~l~~~d~dg-----------~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-------~~l~  242 (435)
T PRK05137        182 KRLAIMDQDG-----------ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-------ELVG  242 (435)
T ss_pred             eEEEEECCCC-----------CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-------EEee
Confidence            4788888765           33455677888999999999998 4655542   46899999977632       2233


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL  300 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~i  300 (424)
                      .+.+.+...+|+|+++.++++.+.++.  |++||+.++.    ...+..+........|+|+++.++++...+|  .|++
T Consensus       243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~  318 (435)
T PRK05137        243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV  318 (435)
T ss_pred             cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence            455677889999999988777776665  7777887754    3344455666778999999996554443444  5778


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      +|+..  .....+..+...+....|+|+|+.++++....  ..|.+||+.....            ..+ . .+  ..+.
T Consensus       319 ~d~~g--~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~------------~~l-t-~~--~~~~  380 (435)
T PRK05137        319 MNADG--SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE------------RIL-T-SG--FLVE  380 (435)
T ss_pred             EECCC--CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce------------Eec-c-CC--CCCC
Confidence            88764  23344444455677889999997544444333  3577788754221            111 1 11  2367


Q ss_pred             eEEeCCCCCcEEEEEeCC-----CcEEEEecCCccC
Q 014433          379 DFSWNPCEDWVISSVAED-----NILQIWQMAENIY  409 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~  409 (424)
                      ...|+|+|+.+++++...     ..|.+.++..+..
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            889999999655555433     2577778766543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=3.1e-14  Score=118.59  Aligned_cols=160  Identities=19%  Similarity=0.450  Sum_probs=112.1

Q ss_pred             eeEEEecCCCcEEEEEeC---------CCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEecCCCCeEEEE-EeCCCcEE
Q 014433          231 EDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILAT-GSTDKTVK  299 (424)
Q Consensus       231 ~~~~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~t-g~~dg~i~  299 (424)
                      ..+.|++.|..+++....         -|...+|.++....  +...+.. ..++|.+++|+|++..++++ |..++.|.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            467899999888766652         24466666655443  2333322 34579999999999865433 45678999


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC---CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK  376 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  376 (424)
                      +||++  ..++..+.  ...++.+.|+|+|+ +|++++.   .|.|.+||++..              ..+.... | ..
T Consensus        87 lyd~~--~~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~--------------~~i~~~~-~-~~  145 (194)
T PF08662_consen   87 LYDVK--GKKIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK--------------KKISTFE-H-SD  145 (194)
T ss_pred             EEcCc--ccEeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC--------------EEeeccc-c-Cc
Confidence            99997  46666664  56788999999997 5666654   467999999864              3333332 3 34


Q ss_pred             cceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCCCCC
Q 014433          377 ISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHDED  413 (424)
Q Consensus       377 v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~  413 (424)
                      ++.++|+|+|++++.+++     .|+.++||++....+....
T Consensus       146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~  187 (194)
T PF08662_consen  146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP  187 (194)
T ss_pred             EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence            789999999997665554     3899999999877665544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=4.1e-15  Score=137.79  Aligned_cols=271  Identities=21%  Similarity=0.386  Sum_probs=199.7

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--ceeEEEecCCC--CceEEE
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFK--EGHLLS  196 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~--~~~l~s  196 (424)
                      .+.-.+.+.++..+|.|+. +|.++.-| +++-|+...         ..+-.-+. |..  .|-.+.|+|..  +..+++
T Consensus        20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p---------~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVs   87 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP---------FTPPRWLH-HITPWQVADVQWSPHPAKPYWIVS   87 (1081)
T ss_pred             EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCC---------CCCceeee-ccCcchhcceecccCCCCceeEEe
Confidence            4456788999999998875 66666655 666787762         22222232 333  46678888763  323444


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      .+ ...-.+|++..... ..  .-..+.+|...|+++.|+|+.+.++++++.|..+..||++++..  ++.....-....
T Consensus        88 ts-~qkaiiwnlA~ss~-~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   88 TS-NQKAIIWNLAKSSS-NA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAA  161 (1081)
T ss_pred             cC-cchhhhhhhhcCCc-cc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccC
Confidence            44 44556899875433 11  22346689999999999999999999999999999999999764  666666666778


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      ..|+|+...+.++| .+....|.+||+|..+.++..+++|-..|+.++|...-...+.+++.|++|++||......+...
T Consensus       162 sqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             ceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence            89999988887554 45667899999999899999999999999999998766567889999999999998764322100


Q ss_pred             CCc--------------------------------------C---CCCCeeeEEEcCCCCCcceEEeCCCC---------
Q 014433          357 EDA--------------------------------------E---DGPPELLFIHGGHTSKISDFSWNPCE---------  386 (424)
Q Consensus       357 ~~~--------------------------------------~---~~~~~~~~~~~~h~~~v~~~~~~~~~---------  386 (424)
                      ...                                      +   -..+..+..+.||...|..+.|-..+         
T Consensus       241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r  320 (1081)
T KOG0309|consen  241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR  320 (1081)
T ss_pred             eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence            000                                      0   01245678888999999888885432         


Q ss_pred             CcEEEEEeCCCcEEEEecCCccCC
Q 014433          387 DWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       387 ~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      .+.|+|-+.|..+++|-+...+++
T Consensus       321 dfQLVTWSkD~~lrlWpI~~~i~~  344 (1081)
T KOG0309|consen  321 DFQLVTWSKDQTLRLWPIDSQIQR  344 (1081)
T ss_pred             ceeEEEeecCCceEeeeccHHHHH
Confidence            357999999999999999988664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=7.1e-13  Score=125.06  Aligned_cols=219  Identities=11%  Similarity=0.074  Sum_probs=138.8

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe---CCCcEEEEeCCCCCCCCcccceeeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---DDAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ..|.++|.+.           .....+..+...+.+.+|+|+|+. |+..+   .+..|.+|++.++..    ..+..  
T Consensus       179 ~~l~~~d~dg-----------~~~~~lt~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~----~~l~~--  240 (429)
T PRK03629        179 YELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAV----RQVAS--  240 (429)
T ss_pred             eeEEEEcCCC-----------CCCEEeecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCe----EEccC--
Confidence            3788888875           223445556778999999999984 55433   245799999976532    11122  


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE-
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF-  301 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw-  301 (424)
                       ..+.+...+|+|+++.++.+.+.+|  .|++||+.++.    +..+..+...+....|+|+|+.++++...++...|| 
T Consensus       241 -~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        241 -FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             -CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence             2334557899999998876656555  48889998765    333444455678899999999655555445555555 


Q ss_pred             -ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          302 -DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       302 -d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                       |+.. + ....+..+........|+|+|+.+++++..++  .|.+||+..+..            .   .+... ....
T Consensus       316 ~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------~---~Lt~~-~~~~  377 (429)
T PRK03629        316 VNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------Q---VLTDT-FLDE  377 (429)
T ss_pred             EECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------E---EeCCC-CCCC
Confidence             5554 2 33444444455678999999986544444443  478888876431            1   11111 1235


Q ss_pred             eEEeCCCCCcEEEEEeCCCc---EEEEecCCcc
Q 014433          379 DFSWNPCEDWVISSVAEDNI---LQIWQMAENI  408 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~dg~---i~vw~~~~~~  408 (424)
                      ...|+|+|+. |+.++.++.   +.++++....
T Consensus       378 ~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        378 TPSIAPNGTM-VIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CceECCCCCE-EEEEEcCCCceEEEEEECCCCC
Confidence            6789999995 555554543   6777876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=2.5e-13  Score=128.31  Aligned_cols=219  Identities=13%  Similarity=0.106  Sum_probs=135.7

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-C--CcEEEEeCCCCCCCCcccceeeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-D--AQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ..|.++|...           .....+..+...+.+.+|+|++. .|+..+. +  ..|.+||+.++..       ..+.
T Consensus       176 ~~L~~~D~dG-----------~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~-------~~l~  236 (427)
T PRK02889        176 YQLQISDADG-----------QNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR-------RVVA  236 (427)
T ss_pred             cEEEEECCCC-----------CCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE-------EEee
Confidence            4577777644           22344556778899999999998 4665543 2  3599999987632       1122


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR  304 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~  304 (424)
                      ...+.+...+|+|+++.++++.+.+|...||.+.....  ....+..+........|+|+|+.+++++..+|...||.+.
T Consensus       237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence            23445678999999988876778888766665542211  1334444555567789999999765555555666777654


Q ss_pred             CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-C--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433          305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-R--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS  381 (424)
Q Consensus       305 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  381 (424)
                      ..+.....+..+.......+|+|+|+. ++..+.+ +  .|.+||+..+..            ..+   .. ........
T Consensus       315 ~~~g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~------------~~l---t~-~~~~~~p~  377 (427)
T PRK02889        315 ASGGAAQRVTFTGSYNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQV------------TAL---TD-TTRDESPS  377 (427)
T ss_pred             CCCCceEEEecCCCCcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCe------------EEc---cC-CCCccCce
Confidence            322222333223334456899999975 5444443 3  699999876432            111   11 12346789


Q ss_pred             eCCCCCcEEEEEeCCCc--EEEEec
Q 014433          382 WNPCEDWVISSVAEDNI--LQIWQM  404 (424)
Q Consensus       382 ~~~~~~~~l~s~~~dg~--i~vw~~  404 (424)
                      |+|+++.++++....|.  +.+-++
T Consensus       378 ~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        378 FAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             ECCCCCEEEEEEecCCCEEEEEEEC
Confidence            99999976666655554  444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.62  E-value=1.1e-14  Score=133.58  Aligned_cols=204  Identities=17%  Similarity=0.327  Sum_probs=156.9

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .|..++|-|+|..++++++  ..+.+||.+.+.      .+..+++|.+.|.+++|+.+|. .||+|+.|..|.+|..+-
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~------llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGT------LLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcc------cccccccccceEEEEEEccCCc-eeccCCCceeEEEecccc
Confidence            7899999999997555543  579999999884      4566789999999999999997 789999999999998765


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      ...   +.  ..|...|.|+.|+|-.. .|++++-. ..-+|....  +.+...+ ....+.+++|..+|. +|+.|-.+
T Consensus        85 EG~---Lk--YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~n  153 (1081)
T KOG1538|consen   85 EGI---LK--YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFN  153 (1081)
T ss_pred             cce---ee--eccCCeeeEeecCchHH-Hhhhcchh-hccccChhh--hhHHhhh-hheeEEEeeecCCCc-EEEEeccC
Confidence            442   22  26899999999999876 58787653 467887664  3333333 256889999999995 89999999


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC----CcEEEEEeCCCcEEEEecCCccCCCCCCC
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE----DWVISSVAEDNILQIWQMAENIYHDEDDL  415 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~  415 (424)
                      |+|.|-+-...            +...+....|.+++|++++|+|..    ..+++......++.++.++......+...
T Consensus       154 GTIsiRNk~gE------------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L  221 (1081)
T KOG1538|consen  154 GTISIRNKNGE------------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL  221 (1081)
T ss_pred             ceEEeecCCCC------------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC
Confidence            99998743321            113344456778899999999963    23788889999999999988877654443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=7.4e-15  Score=130.02  Aligned_cols=259  Identities=19%  Similarity=0.243  Sum_probs=190.6

Q ss_pred             eccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          122 INHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      -+|...|....|.|. +..-+++++.||.|++=.+...       +.......+..|.+.|.-++.-|..+.-|.+++.|
T Consensus       182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD  254 (559)
T KOG1334|consen  182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED  254 (559)
T ss_pred             cccccchhhhhccCCCCCcCceeccccCceeeeeeccc-------cceecceecccccCccceeeecCCCCCcccccccc
Confidence            368888888889884 3346889999999999777651       23343556778999999999999988889999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCc---cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---CCeeee-----
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---KPVQSV-----  269 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---~~~~~~-----  269 (424)
                      +.+.-+|++.......+.   .-..+..   ...+++.+|.+.+.|++++.|..+++||.+.-...   ..+..+     
T Consensus       255 ~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl  331 (559)
T KOG1334|consen  255 AVVFHIDLRQDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL  331 (559)
T ss_pred             cceeeeeeccCCccceee---eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc
Confidence            999999998775433332   1222333   67899999999999999999999999999863211   111111     


Q ss_pred             -eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C----------Ccce-EecCCCC--CEEEEEEc-CCCCcEE
Q 014433          270 -VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S----------TALH-TFDSHKE--EVFQVGWN-PKNETIL  333 (424)
Q Consensus       270 -~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~----------~~~~-~~~~h~~--~v~~~~~s-p~~~~~l  333 (424)
                       ......|++++|+.++.-+||+ -.|-.|++|.-... +          ..+. .+++|..  .|..+-|- |... ++
T Consensus       332 ~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yV  409 (559)
T KOG1334|consen  332 VEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YV  409 (559)
T ss_pred             cccCcccceeEEecCCccceeee-ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eE
Confidence             1234569999999777755554 55778999943221 1          1122 3677764  57777664 5554 79


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++|+.=|.|.||+-.++              +++..+.+-...|+++.=+|.-+ +|||+|-|..|+||...+.
T Consensus       410 vSGSDCGhIFiW~K~t~--------------eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  410 VSGSDCGHIFIWDKKTG--------------EIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             EecCccceEEEEecchh--------------HHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcc
Confidence            99999999999998875              45555566566899999999999 8999999999999998543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.7e-13  Score=128.51  Aligned_cols=220  Identities=14%  Similarity=0.104  Sum_probs=141.5

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ..|.+||...           .....+..+...+.+.+|+|++. .|+.++.   +..|.+||+.++..       ..+.
T Consensus       184 ~~l~i~D~~g-----------~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~-------~~l~  244 (433)
T PRK04922        184 YALQVADSDG-----------YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR-------ELVA  244 (433)
T ss_pred             EEEEEECCCC-----------CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE-------EEec
Confidence            4688898765           22345666777899999999998 5666553   34699999976532       1122


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc--EEE
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKL  300 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~--i~i  300 (424)
                      ...+.....+|+|+++.++++.+.+|  .|++||+.++.    +..+..+.......+|+|+++.++++...+|.  |++
T Consensus       245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~  320 (433)
T PRK04922        245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR  320 (433)
T ss_pred             cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            23444567899999998876766666  59999998765    33344455556788999999965555545555  666


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      +|+.. +. ...+..+.......+|+|+|+.++++...++  .|.+||+..+..            .   .+. +.....
T Consensus       321 ~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------~---~Lt-~~~~~~  382 (433)
T PRK04922        321 VAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------R---TLT-PGSLDE  382 (433)
T ss_pred             EECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------E---ECC-CCCCCC
Confidence            66655 22 3333333344557899999985444443333  589999876421            1   111 122345


Q ss_pred             eEEeCCCCCcEEEEEeCC--CcEEEEecCCcc
Q 014433          379 DFSWNPCEDWVISSVAED--NILQIWQMAENI  408 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~~  408 (424)
                      ...|+|+|+.++++....  +.|.++++..+.
T Consensus       383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            679999999655555433  357777776543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=1.7e-14  Score=129.28  Aligned_cols=196  Identities=17%  Similarity=0.306  Sum_probs=146.0

Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE--EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC----
Q 014433          141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDL--RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN----  214 (424)
Q Consensus       141 latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----  214 (424)
                      +..|-..|.|++.|.....        ...+.  ...-.+..|+++.|-|.+...++++-.+|.+.++|.......    
T Consensus       188 llIGf~tGqvq~idp~~~~--------~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFE--------VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             eEEeeccCceEEecchhhH--------HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence            5557778888888865410        00000  011134789999999988888899999999999976432100    


Q ss_pred             ------------------CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          215 ------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       215 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                                        ..-.++..+..-.+.|+.++|+|++++ +|+.+.||.++|||..+...   +..++..-+..
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eL---lg~mkSYFGGL  335 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQEL---LGVMKSYFGGL  335 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHH---HHHHHhhccce
Confidence                              000222333334568999999999874 57999999999999998664   44444556789


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC----------------------------
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK----------------------------  328 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~----------------------------  328 (424)
                      .|++|+|||+ +|++|+.|--|.||.+.. ++.+..-++|++.|+.++|.|-                            
T Consensus       336 LCvcWSPDGK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~  413 (636)
T KOG2394|consen  336 LCVCWSPDGK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA  413 (636)
T ss_pred             EEEEEcCCcc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence            9999999999 599999999999999997 7889999999999999999831                            


Q ss_pred             -------C------------CcEEEEEECCCeEEEeeCCCC
Q 014433          329 -------N------------ETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       329 -------~------------~~~l~s~~~dg~i~iwd~~~~  350 (424)
                             +            .+.|.+.+.|-.+.+||+...
T Consensus       414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             CCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence                   0            135788889999999999643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3e-13  Score=128.14  Aligned_cols=259  Identities=15%  Similarity=0.177  Sum_probs=187.0

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC--ceEEEEeCCCcEEEE
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLSGSDDAQICLW  206 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~iw  206 (424)
                      ..-.|+++++.+++.  ....|.||...+          ...+..+.+|..++..+.+.|...  .++.+++.+|.|++|
T Consensus        20 ~~avfSnD~k~l~~~--~~~~V~VyS~~T----------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLC--TGNFVKVYSTAT----------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             cccccccCCcEEEEe--eCCEEEEEecch----------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            345788888755554  356899999988          555678999999999999998766  467799999999999


Q ss_pred             eCCCCCCCCcc---------------------------------------------------------------------
Q 014433          207 DINAAPKNKSL---------------------------------------------------------------------  217 (424)
Q Consensus       207 d~~~~~~~~~~---------------------------------------------------------------------  217 (424)
                      |-..+...+.+                                                                     
T Consensus        88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence            97764221100                                                                     


Q ss_pred             --------------------cce--ee------eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC-CCCCCCeee
Q 014433          218 --------------------EAM--QI------FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQS  268 (424)
Q Consensus       218 --------------------~~~--~~------~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~  268 (424)
                                          ...  +.      -..|.-.+++.+++|.++ .+|++..||.|.+|.--. .........
T Consensus       168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~  246 (792)
T KOG1963|consen  168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTL  246 (792)
T ss_pred             EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceE
Confidence                                000  00      012444578899999986 567999999999995433 222334556


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      +.-|...|++++|+++|.+ |.+|+..|.+.+|.+.+.+  .+-+.--.++|..+.++|++. +.+....|+.|.+-...
T Consensus       247 lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             EEecccccceeEEecCCce-EeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence            6778999999999999995 8899999999999999844  334444578999999999996 67788889999999887


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +..............+..   ..+..+-.+.++++|.-+ .++-.+..|.|++||+-+..
T Consensus       323 dl~~k~tIsgi~~~~~~~---k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  323 DLEIKSTISGIKPPTPST---KTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             chhhhhhccCccCCCccc---cccccccceeEEEcCCCC-ceeecCCCceEEEEeccccc
Confidence            765444433222111111   122344567889999555 56677889999999997763

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1e-13  Score=119.77  Aligned_cols=212  Identities=16%  Similarity=0.218  Sum_probs=158.6

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--Cc
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--AQ  202 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~  202 (424)
                      .+.|..++... +  .|++|-.+|.+.+|........      ..+...+..+ ..+..+.-++..++++++|+..  ..
T Consensus       105 ~~~I~gl~~~d-g--~Litc~~sG~l~~~~~k~~d~h------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  105 TKSIKGLKLAD-G--TLITCVSSGNLQVRHDKSGDLH------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             cccccchhhcC-C--EEEEEecCCcEEEEeccCCccc------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence            34555555442 3  5777889999999998852211      2334444434 4567788888888778889998  88


Q ss_pred             EEEEeCCCCCCCCcccceee-eec--CCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          203 ICLWDINAAPKNKSLEAMQI-FKV--HEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      +.+||+++.......+.+.. .-+  -.-.++++.|.+. -.+.||+++.-+.+++||.+.+.  +|+..+.-...++++
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~  252 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISS  252 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCccee
Confidence            99999987643222111110 001  1234677888775 13567899999999999999665  578888778899999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +...|.+. ++++|..-|.+..||+|........+.+-.+.|+++..+|.++ ++|+|+-|..++|+|+.+.
T Consensus       253 ~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  253 TGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             eeecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence            99999887 6999999999999999985555556888899999999999986 8999999999999999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=4.8e-12  Score=106.77  Aligned_cols=179  Identities=18%  Similarity=0.290  Sum_probs=127.8

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec--
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV--  225 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--  225 (424)
                      ..|.|||-..          ..++..+. ...+|.++.+.++   .|++.- .+.|.||......+     .+..+..  
T Consensus        75 NkviIWDD~k----------~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k-----~l~~~et~~  134 (346)
T KOG2111|consen   75 NKVIIWDDLK----------ERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPK-----LLHVIETRS  134 (346)
T ss_pred             ceEEEEeccc----------CcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChh-----heeeeeccc
Confidence            5899999433          34455554 6788999999863   455554 47899999874421     2222221  


Q ss_pred             CCccEeeEEEecCCCcEEEE-EeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc-EEEEEC
Q 014433          226 HEGVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-VKLFDL  303 (424)
Q Consensus       226 ~~~~v~~~~~~~~~~~~~~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~-i~iwd~  303 (424)
                      ....+.+++-+ .+..++|. |-.-|.|+|-|+...... +...+.+|.+.|.|++.+.+|. ++||++..|+ |+|||.
T Consensus       135 NPkGlC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  135 NPKGLCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDT  211 (346)
T ss_pred             CCCceEeecCC-CCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEc
Confidence            12223333222 22334433 445799999999876532 3456789999999999999998 7999999996 899999


Q ss_pred             CCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          304 RKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       304 ~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .+ +.++..+.-  ....|.+++|||+.. +||++|..|+++||.++...
T Consensus       212 ~~-g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  212 ED-GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CC-CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCC
Confidence            98 677777653  345799999999995 89999999999999998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.1e-13  Score=126.58  Aligned_cols=221  Identities=13%  Similarity=0.130  Sum_probs=138.5

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      .|...+...+|+|++.. ||..+.   ...|++|++..        +.   ...+..+.+...+.+|+|++..++++.+.
T Consensus       201 ~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~--------g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        201 RSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLAT--------GQ---RELVASFRGINGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             cCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCC--------CC---EEEeccCCCCccCceECCCCCEEEEEEeC
Confidence            46678889999999984 554442   34699999876        11   12333344455678999999865566666


Q ss_pred             CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCC
Q 014433          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +|  .|.+||+.++..       ..+..+.......+|+|+++.++.+...+|.  |+++|+.++.    ...+..+...
T Consensus       269 ~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~lt~~g~~  337 (433)
T PRK04922        269 DGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERLTFQGNY  337 (433)
T ss_pred             CCCceEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEeecCCCC
Confidence            66  589999976532       2233344455678999999877655545555  6666766544    2222223344


Q ss_pred             eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCC
Q 014433          276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRID  351 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~  351 (424)
                      ...++|+|+|+.++++...++  .|.+||+.+ +... .+. +........|+|+|+.++++....+  .|.++++... 
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-  413 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-  413 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence            557899999996544443333  699999976 3332 333 2334567899999986555554433  4666666432 


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                                    ....+..+.+.+...+|+|
T Consensus       414 --------------~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 --------------VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             --------------ceEEcccCCCCCCCCccCC
Confidence                          2233333445577778876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.60  E-value=4.2e-15  Score=139.42  Aligned_cols=242  Identities=19%  Similarity=0.267  Sum_probs=177.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -+|.+.|+.++.+..+. ++|+++.|..|++|.+..          +.++..+.+|++.|++|+|+|-     .+.+.||
T Consensus       229 rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~----------~~pvsvLrghtgavtaiafsP~-----~sss~dg  292 (1113)
T KOG0644|consen  229 RGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPD----------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDG  292 (1113)
T ss_pred             CCCccccchhccchhhh-hhhhcccCceEEEEecCC----------CchHHHHhccccceeeeccCcc-----ccCCCCC
Confidence            37999999999998665 899999999999999988          7888889999999999999993     3778999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ++++||.+-......-.+.. +. ....+.++.|...+. -+++++.|+.-..|.+..-..         +...+.-+.+
T Consensus       293 t~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~---------~~~~lif~t~  360 (1113)
T KOG0644|consen  293 TCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGD-RFLTGSRDGEARNHEFEQLAW---------RSNLLIFVTR  360 (1113)
T ss_pred             ceEeccccccccccCCCCCC-cc-cccceeeeecccccc-ccccccCCcccccchhhHhhh---------hccceEEEec
Confidence            99999987221111111111 11 234566677776665 456999999988887654221         1222222222


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +.+-..+.+++-.+-.+.+|++.. +...+.+.+|...+..+.++|..+.+..+++.||...|||+-.+..         
T Consensus       361 ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---------  430 (1113)
T KOG0644|consen  361 SSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---------  430 (1113)
T ss_pred             cccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---------
Confidence            222233566777788899999998 7888899999999999999999988888999999999999987542         


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                         ...+. .+|. .+.+-+|+++|. -++....-|.++|.....+
T Consensus       431 ---ik~y~-~gh~-kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  431 ---IKHYF-IGHG-KLVDGKFSQDGT-SIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             ---ceeee-cccc-eeeccccCCCCc-eEecCCCCCceEEeccCCC
Confidence               22222 4444 577889999999 4666677788888766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=9.2e-13  Score=124.31  Aligned_cols=222  Identities=8%  Similarity=0.065  Sum_probs=138.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.+.+...+|+|+|+.++.+..  .+..|++|++..        +...   .+......+..+.|+|+|..++++.+.+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--------G~~~---~l~~~~~~~~~~~~SPDG~~La~~~~~~  264 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--------GAVR---QVASFPRHNGAPAFSPDGSKLAFALSKT  264 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--------CCeE---EccCCCCCcCCeEECCCCCEEEEEEcCC
Confidence            45668899999999985444432  245799999876        2122   2222333345689999998544455555


Q ss_pred             C--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCe
Q 014433          201 A--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       201 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      |  .|.+||+.++..       ..+..+...+....|+|+++.++.+...++...||  |+.++.    ...+.......
T Consensus       265 g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~~  333 (429)
T PRK03629        265 GSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQN  333 (429)
T ss_pred             CCcEEEEEECCCCCE-------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCCc
Confidence            5  488899876532       22233445678899999998776555445554555  665543    23333344456


Q ss_pred             eEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe---EEEeeCCCCC
Q 014433          277 NCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR---LMVWDLSRID  351 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~  351 (424)
                      .+..|+|+|+.+++++..++  .|.+||+.+ +. ...+.. ........|+|+|.. |+.++.++.   +.++++..  
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G--  407 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG--  407 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCC-CCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC--
Confidence            67899999996555554443  588899876 33 233332 223456889999975 555555543   66677643  


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                                   .....+.+|.+.+...+|+|-
T Consensus       408 -------------~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 -------------RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             -------------CCeEECccCCCCcCCcccCCC
Confidence                         223445567778889999873

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=8.2e-14  Score=115.99  Aligned_cols=239  Identities=14%  Similarity=0.151  Sum_probs=162.4

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecC---CCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI  222 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  222 (424)
                      .|.+.+|++...        ...+...++ .....+..+.|.-   ++.-.++-+...|.|.++..........+..+..
T Consensus        45 ~Gkl~Lys~~d~--------~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~  116 (339)
T KOG0280|consen   45 SGKLHLYSLEDM--------KLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS  116 (339)
T ss_pred             ccceEEEeeccc--------ccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence            456777777652        122222222 1334456666653   1222466777789999998765433333333222


Q ss_pred             eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014433          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD  302 (424)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd  302 (424)
                      .........++.|++.+..++ ++-.+|.+.+.+..... .+.++..+.|.-.+....|+...++++.+|+.|+.+..||
T Consensus       117 ~ki~~~~~lslD~~~~~~~i~-vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D  194 (339)
T KOG0280|consen  117 KKISVVEALSLDISTSGTKIF-VSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD  194 (339)
T ss_pred             hhhhheeeeEEEeeccCceEE-EEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence            222222356788888887655 77788998866665544 3456678899999999999998888999999999999999


Q ss_pred             CCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEE
Q 014433          303 LRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS  381 (424)
Q Consensus       303 ~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  381 (424)
                      +|.++..+.. .+.|...|.+|.-+|..+.++++|+.|..|++||.++..++.             +.-. -.+.|+.+.
T Consensus       195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-------------~~~~-v~GGVWRi~  260 (339)
T KOG0280|consen  195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-------------FKAK-VGGGVWRIK  260 (339)
T ss_pred             ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-------------ccCc-cccceEEEE
Confidence            9965655544 567899999999999888899999999999999999875432             2111 126799999


Q ss_pred             eCCCCCc-EEEEEeCCCcEEEEecCCccCC
Q 014433          382 WNPCEDW-VISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       382 ~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ++|.... +++++-..| .+|-+++.+..+
T Consensus       261 ~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNG-AKILDSSDKVLE  289 (339)
T ss_pred             ecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence            9996443 344444444 777777776555

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.8e-12  Score=120.14  Aligned_cols=203  Identities=12%  Similarity=0.110  Sum_probs=132.8

Q ss_pred             eccCCceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..|.+.+...+|+|+++.++.+..  .+..|++||+.+        +   ....+..+.+.+.+.+|+|+|..++++.+.
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~--------g---~~~~l~~~~g~~~~~~~SPDG~~la~~~~~  266 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET--------G---QRELVGNFPGMTFAPRFSPDGRKVVMSLSQ  266 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC--------C---cEEEeecCCCcccCcEECCCCCEEEEEEec
Confidence            367789999999999985444332  246899999976        1   123455566677889999999865567776


Q ss_pred             CCc--EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          200 DAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       200 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      ++.  |.+||+.++..       ..+..+........|+|++..++.+...+|  .|+++|+..+.    ...+..+...
T Consensus       267 ~g~~~Iy~~d~~~~~~-------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~  335 (435)
T PRK05137        267 GGNTDIYTMDLRSGTT-------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR  335 (435)
T ss_pred             CCCceEEEEECCCCce-------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence            665  66778766522       223345556678999999987765544444  57888876644    2333334556


Q ss_pred             eeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCC
Q 014433          276 VNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLS  348 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~  348 (424)
                      +....|+|+|+.++++....  ..|.+||+.. + ....+. ....+....|+|+|+.+++++...     ..+.++|+.
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            67789999999654444333  3688888754 2 223332 233577899999998655555433     257777775


Q ss_pred             C
Q 014433          349 R  349 (424)
Q Consensus       349 ~  349 (424)
                      .
T Consensus       413 g  413 (435)
T PRK05137        413 G  413 (435)
T ss_pred             C
Confidence            4

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.1e-13  Score=125.66  Aligned_cols=227  Identities=14%  Similarity=0.166  Sum_probs=137.7

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeC-C--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTV-S--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~-d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+.+.+.+.+|+|+++. ||..+. +  ..|++||+..        +  . ...+....+.+.+.+|+|++..++++.+
T Consensus       192 ~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~--------g--~-~~~l~~~~g~~~~~~~SPDG~~la~~~~  259 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLAT--------G--R-RRVVANFKGSNSAPAWSPDGRTLAVALS  259 (427)
T ss_pred             ccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCC--------C--C-EEEeecCCCCccceEECCCCCEEEEEEc
Confidence            356788999999999975 544442 2  4699999976        1  1 2233334455678999999986555677


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .+|...||.++....     ....+..+........|+|+++.++.+...+|...||.+.....  ....+.........
T Consensus       260 ~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~~~~  332 (427)
T PRK02889        260 RDGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSYNTS  332 (427)
T ss_pred             cCCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCCcCc
Confidence            888877776543211     12223334455667899999987765555566667776543211  12222222334456


Q ss_pred             EEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCCccc
Q 014433          279 LAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDEEQ  354 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~~~  354 (424)
                      .+|+|+|+++++++...+  .|.+||+.. +.. ..+.. ........|+|+++.++++....|.  +.+.++..     
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-----  404 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-----  404 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----
Confidence            789999996444433333  699999986 332 23332 2344678999999866666655554  33444422     


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                                .....+..+.+.+...+|+|-
T Consensus       405 ----------~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        405 ----------RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ----------CceEEeecCCCCCCCCccCCC
Confidence                      222333345566777888874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=2.6e-13  Score=132.69  Aligned_cols=226  Identities=18%  Similarity=0.181  Sum_probs=156.2

Q ss_pred             CCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEE
Q 014433          168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV  246 (424)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  246 (424)
                      +..+..+..|...+..++.++....+|++||.||+|++|+++.-... ...+...++..-...+.++...+.+. -+|.+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVS 1116 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEE
Confidence            34455677788899999998877569999999999999999765433 33444444554567888888888776 45788


Q ss_pred             eCCCeEEEEEcCCCCCCCCe----eeeecc-CCCeeE-EEecCCCC-eEEEEEeCCCcEEEEECCCCCCcceEe--cCCC
Q 014433          247 GDDQYLLIWDLRTPSVSKPV----QSVVAH-QSEVNC-LAFNPFNE-WILATGSTDKTVKLFDLRKISTALHTF--DSHK  317 (424)
Q Consensus       247 ~~dg~i~i~d~~~~~~~~~~----~~~~~~-~~~v~~-v~~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~  317 (424)
                      +.||.|++.++......+..    .....+ .+.+.+ -+|..... ..++.+...+.|..||+|+. ..+.++  ....
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRLKNQLRH 1195 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhhhcCccc
Confidence            99999999999873221111    111111 223333 34443333 37888888999999999983 333333  2345


Q ss_pred             CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC---cEEEEEe
Q 014433          318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED---WVISSVA  394 (424)
Q Consensus       318 ~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~  394 (424)
                      +.|++++.+|.+. .++.|+..|.+.+||++.....            .-.. .++..+|..+..+|-.+   +.+++++
T Consensus      1196 G~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i------------~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPI------------LSWE-HPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             cceeEEEecCCce-EEEEecCCceEEEEEeecCcee------------eccc-CcccCCcceEEeeccCCCCceEEEecc
Confidence            7899999999996 7999999999999999975321            1122 23446788888777543   3444444


Q ss_pred             -CCCcEEEEecCCccC
Q 014433          395 -EDNILQIWQMAENIY  409 (424)
Q Consensus       395 -~dg~i~vw~~~~~~~  409 (424)
                       ..+.|.+|++.++..
T Consensus      1262 ~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             cCCCceeeeecccCcc
Confidence             678899999999843

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.2e-13  Score=112.50  Aligned_cols=153  Identities=17%  Similarity=0.344  Sum_probs=103.8

Q ss_pred             eEEEecCCCCceEEEEeC---------CCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEE-EeCCC
Q 014433          182 YGLSWSKFKEGHLLSGSD---------DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGS-VGDDQ  250 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s-~~~dg  250 (424)
                      ..+.|+|.|..+++....         -|...+|.++....     +...+. ...++|.+++|+|++..++++ |..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-----ccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence            468899999866555542         23456666644322     112222 134579999999999876433 44678


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      .|.+||++.    .++..+  +...++.|.|+|+|++ |++|+.   .|.|.+||.++ .+.+.....  ..++.++|+|
T Consensus        84 ~v~lyd~~~----~~i~~~--~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~-~~~i~~~~~--~~~t~~~WsP  153 (194)
T PF08662_consen   84 KVTLYDVKG----KKIFSF--GTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRK-KKKISTFEH--SDATDVEWSP  153 (194)
T ss_pred             ccEEEcCcc----cEeEee--cCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCC-CEEeecccc--CcEEEEEEcC
Confidence            999999973    234443  3567899999999995 555543   46799999997 566666543  3578999999


Q ss_pred             CCCcEEEEEEC-----CCeEEEeeCCC
Q 014433          328 KNETILASCCL-----GRRLMVWDLSR  349 (424)
Q Consensus       328 ~~~~~l~s~~~-----dg~i~iwd~~~  349 (424)
                      +|+.++.+.+.     |+.++||++..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEecC
Confidence            99854444432     78899999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=9.9e-15  Score=128.46  Aligned_cols=242  Identities=17%  Similarity=0.281  Sum_probs=175.0

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      .++...+.-...|..++|..+.. ++|++ ....++|||-..           ..+..++.| ..|..|.|.|..- +|+
T Consensus       161 ~~L~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~G-----------tElHClk~~-~~v~rLeFLPyHf-LL~  225 (545)
T KOG1272|consen  161 KKLHFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNNG-----------TELHCLKRH-IRVARLEFLPYHF-LLV  225 (545)
T ss_pred             ceeeeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCCC-----------cEEeehhhc-Cchhhhcccchhh-eee
Confidence            34555666778899999988664 77775 467899999765           344555544 4688999999765 789


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +++..|.++.-|+..++..      ..+....+.+..++-+|-+. ++-+|...|+|.+|......   ++..+..|.++
T Consensus       226 ~~~~~G~L~Y~DVS~GklV------a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske---PLvKiLcH~g~  295 (545)
T KOG1272|consen  226 AASEAGFLKYQDVSTGKLV------ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE---PLVKILCHRGP  295 (545)
T ss_pred             ecccCCceEEEeechhhhh------HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc---hHHHHHhcCCC
Confidence            9999999999999988543      33444567888888889875 77799999999999988755   57777889999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |.+|++++.|. ++||.+.|..++|||+|+.. .+.++.. ..+...+++|..|  +| +++....|.||.=......  
T Consensus       296 V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~--  367 (545)
T KOG1272|consen  296 VSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSG--  367 (545)
T ss_pred             cceEEECCCCc-EEeecccccceeEeeecccc-ccceeec-CCCcccccccccc--ce-eeecCCeeeeehhhhcCCC--
Confidence            99999999998 69999999999999999965 4444443 4577889999876  35 4555667999953321100  


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI  398 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  398 (424)
                            ........+. ..+.|.++.|.|-.. +|..|-..|.
T Consensus       368 ------~~~~pYm~H~-~~~~V~~l~FcP~ED-vLGIGH~~G~  402 (545)
T KOG1272|consen  368 ------HGETPYMNHR-CGGPVEDLRFCPYED-VLGIGHAGGI  402 (545)
T ss_pred             ------CCCcchhhhc-cCcccccceeccHHH-eeeccccCCc
Confidence                  0001111111 134799999999766 5555554443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=2.6e-14  Score=120.65  Aligned_cols=220  Identities=16%  Similarity=0.252  Sum_probs=151.2

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      .+|+|+|+ ++|+.+.- .+.|-|..+          .+ +..+...-..|.-+.|..+....|.....++.|.+|++..
T Consensus        14 c~fSp~g~-yiAs~~~y-rlviRd~~t----------lq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q   80 (447)
T KOG4497|consen   14 CSFSPCGN-YIASLSRY-RLVIRDSET----------LQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ   80 (447)
T ss_pred             eeECCCCC-eeeeeeee-EEEEeccch----------hh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec
Confidence            57999886 89987754 777878766          11 1122223457888999988876677788899999999976


Q ss_pred             CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEE
Q 014433          211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA  290 (424)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~  290 (424)
                      ..-      ...+.....++..++|+|+|++++.+..-+-.|.+|.+.+.+.    ..++-.+..+..++|+|+|++ .+
T Consensus        81 pew------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f-~a  149 (447)
T KOG4497|consen   81 PEW------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF-CA  149 (447)
T ss_pred             cee------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce-ee
Confidence            532      2334556788999999999999999999999999999998653    222333456788999999985 55


Q ss_pred             EEeC-CC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          291 TGST-DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       291 tg~~-dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      ..+. |.  .+.|..-.. ...+..+....-..+.+.|+|+|. .|         .+||---.-             . +
T Consensus       150 i~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Ley-------------k-v  204 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLEY-------------K-V  204 (447)
T ss_pred             eeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCCc-EE---------EEecchhhh-------------e-e
Confidence            5443 22  122221111 234555666666788999999996 34         356542210             1 1


Q ss_pred             EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433          368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI  401 (424)
Q Consensus       368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v  401 (424)
                      ..+. -.-.+..++|+|.++ +|+.|+.|+.+||
T Consensus       205 ~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrv  236 (447)
T KOG4497|consen  205 YAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRV  236 (447)
T ss_pred             eeee-eccceeEEEeccccc-eEEeeccchhhhh
Confidence            1111 123488899999999 8999999999987

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=1.3e-12  Score=110.51  Aligned_cols=246  Identities=16%  Similarity=0.240  Sum_probs=160.9

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      --..|..|.|..+..++|.....++.|.+|++..          ..-...+......+.+++|+|+|..+|.+...+-.|
T Consensus        47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lri  116 (447)
T KOG4497|consen   47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRI  116 (447)
T ss_pred             HHHHhhheeeeccceeeeeeeeccceEEEEEeec----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEE
Confidence            3456777889988888888889999999999987          222345666778899999999998888888899999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-----------------------------------eC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-----------------------------------GD  248 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------------------------~~  248 (424)
                      .+|.+.+.+.       ..+.-.+..+..++|+|+++...+..                                   -+
T Consensus       117 TVWSL~t~~~-------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  117 TVWSLNTQKG-------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             EEEEecccee-------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            9999987532       11222234556777888776432111                                   11


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---------------------
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---------------------  307 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---------------------  307 (424)
                      +..+.+||---.-   .+..+ ...-.+..++|+|.++ +|+.|+.|+.+++.+--+.+                     
T Consensus       190 g~~laVwd~~Ley---kv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k  264 (447)
T KOG4497|consen  190 GNWLAVWDNVLEY---KVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK  264 (447)
T ss_pred             CcEEEEecchhhh---eeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence            2234445432111   11111 1235788999999888 79999999998885421100                     


Q ss_pred             --------------------------------------------CcceEecCCCCCEEEEEEcCCCCcEEEEEEC--CCe
Q 014433          308 --------------------------------------------TALHTFDSHKEEVFQVGWNPKNETILASCCL--GRR  341 (424)
Q Consensus       308 --------------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~--dg~  341 (424)
                                                                  +|...+......+.-++|+++. ++++|-..  -+.
T Consensus       265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~Pna  343 (447)
T KOG4497|consen  265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNA  343 (447)
T ss_pred             hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCce
Confidence                                                        0001111223467889999998 46666543  246


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +-+||++..+.               +..--...+|..+.|+|..+.++++.+ ...+++|.++.-.
T Consensus       344 lW~Wdlq~l~l---------------~avLiQk~piraf~WdP~~prL~vctg-~srLY~W~psg~~  394 (447)
T KOG4497|consen  344 LWLWDLQNLKL---------------HAVLIQKHPIRAFEWDPGRPRLVVCTG-KSRLYFWAPSGPR  394 (447)
T ss_pred             EEEEechhhhh---------------hhhhhhccceeEEEeCCCCceEEEEcC-CceEEEEcCCCce
Confidence            89999987432               111223557999999999886555544 5569999987643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=7.6e-13  Score=112.59  Aligned_cols=267  Identities=16%  Similarity=0.282  Sum_probs=180.4

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CceeEEEecCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKF  189 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~  189 (424)
                      +.-.+-|.++.|...|. +||||..+|.|.+|.-......     .......++.|.            ..|..+.|.++
T Consensus        22 vteadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~-----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG-----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             echhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc-----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            34456788999999887 8999999999999987653220     111223344443            36889999887


Q ss_pred             CC-ceEEEEeCCCcEEEEeCCCCCCCC---------------cc--------------cceeee-ecCCccEeeEEEecC
Q 014433          190 KE-GHLLSGSDDAQICLWDINAAPKNK---------------SL--------------EAMQIF-KVHEGVVEDVAWHLR  238 (424)
Q Consensus       190 ~~-~~l~s~~~dg~i~iwd~~~~~~~~---------------~~--------------~~~~~~-~~~~~~v~~~~~~~~  238 (424)
                      +. ..++....|.+|++|.+.......               .+              .+.+.+ ..|.-.|++|.++.+
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence            54 357778899999999987543221               00              111222 357888999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc---
Q 014433          239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL---  310 (424)
Q Consensus       239 ~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---  310 (424)
                      ...++ + .+|=.|.+|.+.-....-.+.-++.+     ..-|++..|+|..-++|+-.+..|+|++-|+|...-+-   
T Consensus       176 ~Et~l-S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  176 KETFL-S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             cceEe-e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence            87654 4 47888999998765433233333333     24588999999888889999999999999999522110   


Q ss_pred             eEe------------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC----
Q 014433          311 HTF------------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT----  374 (424)
Q Consensus       311 ~~~------------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~----  374 (424)
                      ..+            ..--..|..+.|++.|+ ++++-.. -+|++||+....             ..+.+.+-|.    
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~-------------~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEA-------------KPVETYPVHEYLRS  318 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccC-------------CcceEEeehHhHHH
Confidence            111            11124688999999996 5555433 579999996542             2222222221    


Q ss_pred             --------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          375 --------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       375 --------~~v---~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                              ..|   ..++|+-++. .++||+..+.++++++..+..++.
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~  366 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDF  366 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceee
Confidence                    123   3578998888 699999999999999888766544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.54  E-value=8.1e-12  Score=114.53  Aligned_cols=264  Identities=11%  Similarity=0.125  Sum_probs=155.5

Q ss_pred             EEEEEEeccCCce-eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          116 VQIIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       116 ~~~~~~~~h~~~v-~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      .+++.++...+.+ ..+.|+|+++. +.+++.||.|.++|+.+          .+.+.++.. .....+++++++|+.++
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~-~yv~~rdg~vsviD~~~----------~~~v~~i~~-G~~~~~i~~s~DG~~~~   93 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRY-LYVANRDGTVSVIDLAT----------GKVVATIKV-GGNPRGIAVSPDGKYVY   93 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSE-EEEEETTSEEEEEETTS----------SSEEEEEE--SSEEEEEEE--TTTEEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCE-EEEEcCCCeEEEEECCc----------ccEEEEEec-CCCcceEEEcCCCCEEE
Confidence            3445566655554 44779999984 55567899999999988          455566654 44578899999999544


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      ++....+.+.++|.++.+....+.. ....  .....+..+..+|..+.++++.-..+.|.+.|....+.  ........
T Consensus        94 v~n~~~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~~  170 (369)
T PF02239_consen   94 VANYEPGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTTIKV  170 (369)
T ss_dssp             EEEEETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEEEE-
T ss_pred             EEecCCCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceeeecc
Confidence            5556799999999977643222211 0011  12356778888888776665666668898889877542  12222334


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--------------------------------------------
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--------------------------------------------  308 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--------------------------------------------  308 (424)
                      ........|+|++++++++...+..|.++|..+...                                            
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            566788999999998777766677888888765210                                            


Q ss_pred             ----------cceEecCCCCCEEEEEEcCCCCcEEEE---EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-CC
Q 014433          309 ----------ALHTFDSHKEEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-HT  374 (424)
Q Consensus       309 ----------~~~~~~~h~~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~  374 (424)
                                .++++.....+ .-+.-+|+++++.+.   +...+.|.++|.++.              +....+.. ..
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------------~~~~~i~~~~~  315 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------------KVVKTITPGPG  315 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------EEEE-HHHHHT
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------ceeEEEeccCC
Confidence                      01122222223 567778998754444   345678999999875              22333221 12


Q ss_pred             CCcceEEeCCCCCcEEEEEeCCC-cEEEEecCCccC
Q 014433          375 SKISDFSWNPCEDWVISSVAEDN-ILQIWQMAENIY  409 (424)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~  409 (424)
                      ..+..+.|+++|+++.+|.-..+ .|.|+|..+..+
T Consensus       316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            24889999999998888777666 899999988654

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.54  E-value=1.1e-12  Score=111.62  Aligned_cols=215  Identities=18%  Similarity=0.357  Sum_probs=154.0

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|+....-|..+ -+.+.+.|.+++||--...       ++.-+.. ...-..+++++.+.+... .|+.|-..|
T Consensus        21 eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds-------~q~wpsI-~~~mP~~~~~~~y~~e~~-~L~vg~~ng   90 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDS-------GQYWPSI-YHYMPSPCSAMEYVSESR-RLYVGQDNG   90 (404)
T ss_pred             cCchhhhhhheeccCCC-CeEEccccceeeeEEeccc-------cccCchh-hhhCCCCceEeeeeccce-EEEEEEecc
Confidence            36888899888888666 4777899999999976541       1122211 122456788999988665 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE---------------------------
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI---------------------------  254 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i---------------------------  254 (424)
                      ++.-+.+...-  .....++.+..|...+..+-|+-....++ +.+.|..+.-                           
T Consensus        91 tvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~~~e~V~-s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~  167 (404)
T KOG1409|consen   91 TVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSLTHEWVL-STGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY  167 (404)
T ss_pred             eEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecCCceeEE-EeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence            99988775431  12233455666777777777765554333 4444443322                           


Q ss_pred             ------------EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEE
Q 014433          255 ------------WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ  322 (424)
Q Consensus       255 ------------~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~  322 (424)
                                  ..+.... ..++..+.+|...+++++|.+... +|.+|..|..+.+||+--.........+|...|..
T Consensus       168 ~fvGd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA  245 (404)
T ss_pred             EEecccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence                        1111111 245677789999999999999766 79999999999999998756677788899999999


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          323 VGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +...+.-. .|.+++.||.|.+|+++....
T Consensus       246 l~~~~~t~-~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  246 LSYAQHTR-QLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence            98888775 588999999999999986543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=2.9e-13  Score=115.08  Aligned_cols=289  Identities=19%  Similarity=0.316  Sum_probs=184.8

Q ss_pred             CCCCCCCCcEEEEEEeccCCceeEEEecCCC-CcEEEEEeCCCeEEEEeCCCCCCCCCC---------------------
Q 014433          107 GGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPL---------------------  164 (424)
Q Consensus       107 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~latg~~dg~v~iw~~~~~~~~~~~---------------------  164 (424)
                      ..+.+..+.+..++.+.-...|+.++|.+++ ...+...+.|.+|++|.+.........                     
T Consensus        66 t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~  145 (433)
T KOG1354|consen   66 TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEG  145 (433)
T ss_pred             eeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeec
Confidence            3444556677777888888999999999864 335566688999999998764332200                     


Q ss_pred             ----CCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--eeecCCccEeeEEEec
Q 014433          165 ----DGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWHL  237 (424)
Q Consensus       165 ----~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~  237 (424)
                          .-...+.+. ..+|.--|.+++++.+.. .++++ .|-.|.+|+++-......+.-++  .+..-..-|++..|+|
T Consensus       146 ~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp  223 (433)
T KOG1354|consen  146 RHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP  223 (433)
T ss_pred             cccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence                000011111 124777899999999887 45554 57899999997553322221111  0111234688999999


Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCCCCC---Cee----------eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433          238 RHEYLFGSVGDDQYLLIWDLRTPSVSK---PVQ----------SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR  304 (424)
Q Consensus       238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~---~~~----------~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~  304 (424)
                      ...++|+-.+..|+|++.|+|......   .+.          -+..--..|..+.|++.|++ +++-+ --+|++||+.
T Consensus       224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~n  301 (433)
T KOG1354|consen  224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLN  301 (433)
T ss_pred             hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEecc
Confidence            999999999999999999999543110   010          01112245788999999985 55543 2589999997


Q ss_pred             CCCCcceEecCCCC------------C---EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC-C-CcCCCCC---
Q 014433          305 KISTALHTFDSHKE------------E---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP-E-DAEDGPP---  364 (424)
Q Consensus       305 ~~~~~~~~~~~h~~------------~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~---  364 (424)
                      ...+|+.+++.|..            .   -..++|+-++. .++||+.....++|++..+...... . .....++   
T Consensus       302 me~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~  380 (433)
T KOG1354|consen  302 MEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV  380 (433)
T ss_pred             ccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence            77889888887742            2   25689998885 7899999999999997665432211 0 0001001   


Q ss_pred             -eeeEEEc-C-------------CCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          365 -ELLFIHG-G-------------HTSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       365 -~~~~~~~-~-------------h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                       .+-.+.. |             ....+...+|+|... .||.+.. +.+.||
T Consensus       381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en-~ia~aat-nnlyif  431 (433)
T KOG1354|consen  381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN-SIAVAAT-NNLYIF  431 (433)
T ss_pred             ccceeeecCCCccccccccchhhhhhHHHhhccCCccc-eeeeeec-CceEEe
Confidence             1111111 1             123467789999988 6777664 446665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.5e-11  Score=112.46  Aligned_cols=229  Identities=13%  Similarity=0.183  Sum_probs=135.8

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce--EEEEeCCC--cEEEEeCCCCCCCCcccceeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH--LLSGSDDA--QICLWDINAAPKNKSLEAMQIF  223 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~  223 (424)
                      +.|.+.|.+.           .....+........+-.|+|+|..+  +++...+|  .|.+.++.++..    ..+.  
T Consensus       165 ~~l~~~d~dG-----------~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt--  227 (428)
T PRK01029        165 GELWSVDYDG-----------QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG----KKIL--  227 (428)
T ss_pred             ceEEEEcCCC-----------CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc----eEee--
Confidence            3566666654           1123344455566778999998752  23454444  477778876532    1122  


Q ss_pred             ecCCccEeeEEEecCCCcEEEEEeCCC----eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          224 KVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                       ...+.....+|+|+|+.++.+...+|    .+.+|++..+....+..............+|+|+|+.++.+...+|...
T Consensus       228 -~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~  306 (428)
T PRK01029        228 -ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPR  306 (428)
T ss_pred             -cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence             23344556899999988776654433    3444677653211122222222234567899999997665555667555


Q ss_pred             EE--ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433          300 LF--DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS  375 (424)
Q Consensus       300 iw--d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  375 (424)
                      +|  ++...+.....+..+...+....|+|+|+.+++++..+  ..|.+||+..+..            .   .+.....
T Consensus       307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------~---~Lt~~~~  371 (428)
T PRK01029        307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------Y---QLTTSPE  371 (428)
T ss_pred             EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------E---EccCCCC
Confidence            55  44322233444544556778899999998655454443  3688999876532            1   1122223


Q ss_pred             CcceEEeCCCCCcEEEEEeC--CCcEEEEecCCccC
Q 014433          376 KISDFSWNPCEDWVISSVAE--DNILQIWQMAENIY  409 (424)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~  409 (424)
                      .+....|+|+|+++++++..  ...|.+|++..+..
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            46778999999976666543  34688888877644

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.6e-11  Score=116.43  Aligned_cols=223  Identities=13%  Similarity=0.126  Sum_probs=133.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+...+...+|+|+|+.++.+...++  .|++||+.+        +..   ..+....+.....+|+|++..++++.+.+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--------g~~---~~lt~~~g~~~~~~wSPDG~~La~~~~~~  283 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--------QVR---EKVTSFPGINGAPRFSPDGKKLALVLSKD  283 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC--------CCe---EEecCCCCCcCCeeECCCCCEEEEEEeCC
Confidence            34567788999999986555544443  588888865        111   12222233345789999999655566777


Q ss_pred             Cc--EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          201 AQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       201 g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      |.  |.++|+.++..       ..+..+.......+|+|+++.++.+...++.  |.++|+.+++.    ..+.......
T Consensus       284 g~~~Iy~~dl~tg~~-------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~Lt~~g~~~  352 (448)
T PRK04792        284 GQPEIYVVDIATKAL-------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRLTFEGEQN  352 (448)
T ss_pred             CCeEEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEEecCCCCC
Confidence            75  77778765421       2233344556778999999887766655554  66667766542    2222222334


Q ss_pred             eEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCCc
Q 014433          277 NCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDE  352 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~  352 (424)
                      ...+|+|+|+.+++++..++  .|.++|+.+ +. ...+... .......|+|+++.++++...++.  +.+++...   
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G---  426 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG---  426 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC---
Confidence            45789999997666655555  455567765 33 2233221 122345899999876666666665  55566532   


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                                  .....+..+.+.+...+|+|-
T Consensus       427 ------------~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        427 ------------RFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ------------CceEECcCCCCCcCCCccCCC
Confidence                        222333344455677788873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=3.7e-11  Score=113.98  Aligned_cols=217  Identities=15%  Similarity=0.159  Sum_probs=138.9

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeee
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ..|.++|...           .....+..+...+...+|+|+++ +|+.++..   ..|++||+.++..       ..+.
T Consensus       170 ~~l~~~d~~g-----------~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~-------~~~~  230 (417)
T TIGR02800       170 YELQVADYDG-----------ANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQR-------EKVA  230 (417)
T ss_pred             ceEEEEcCCC-----------CCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCE-------EEee
Confidence            3677777654           22345566777788999999998 46655433   4799999976532       1223


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL  300 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~i  300 (424)
                      .+...+.+++|+|+++.++++.+.++  .|++||+.++.    ...+..+........|+|+++.++++....+  .|++
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~  306 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYM  306 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence            34556677899999987776666555  58888988754    2333344455567899999987555554444  5777


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC---eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCc
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI  377 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  377 (424)
                      +|+.. +. ...+..+...+....|+|++.. ++.++.++   .|.+||+.....            ..+   ... ...
T Consensus       307 ~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~-~~~  367 (417)
T TIGR02800       307 MDADG-GE-VRRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE------------RVL---TDT-GLD  367 (417)
T ss_pred             EECCC-CC-EEEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe------------EEc---cCC-CCC
Confidence            78775 22 3444445567788999999974 55555554   688888875321            111   111 123


Q ss_pred             ceEEeCCCCCcEEEEEeCCC--cEEEEecCC
Q 014433          378 SDFSWNPCEDWVISSVAEDN--ILQIWQMAE  406 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~  406 (424)
                      ....|+|++++++++...++  .+.+.+...
T Consensus       368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            45689999996666555444  355555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=6.7e-11  Score=112.22  Aligned_cols=219  Identities=13%  Similarity=0.129  Sum_probs=133.7

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cEEEEeCCCCCCCCcccceeeeecC
Q 014433          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      .|.++|...           .....+..+...+.+..|+|+|..++++...++  .|.+||+.++..    ..+..   .
T Consensus       199 ~l~i~d~dG-----------~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~---~  260 (448)
T PRK04792        199 QLMIADYDG-----------YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----EKVTS---F  260 (448)
T ss_pred             EEEEEeCCC-----------CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----EEecC---C
Confidence            566677654           112345566778889999999985334433343  588889876532    11111   2


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc--EEEEE
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKLFD  302 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~--i~iwd  302 (424)
                      .+.....+|+|+++.++++.+.+|.  |+++|+.++.    ...+..+.......+|+|+++.++++...++.  |.++|
T Consensus       261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d  336 (448)
T PRK04792        261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN  336 (448)
T ss_pred             CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            2334578999999988777777775  7777887654    33444455566788999999976666655554  66667


Q ss_pred             CCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE--EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE
Q 014433          303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL--MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF  380 (424)
Q Consensus       303 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  380 (424)
                      +.. ++ ...+..........+|+|+|+.++++...++..  .++|+..+..            ..+   ... ......
T Consensus       337 l~~-g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------~~l---t~~-~~d~~p  398 (448)
T PRK04792        337 LAS-GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------QVL---TST-RLDESP  398 (448)
T ss_pred             CCC-CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------EEc---cCC-CCCCCc
Confidence            765 33 233322233345679999998665655555544  4456654321            111   111 112345


Q ss_pred             EeCCCCCcEEEEEeCCCc--EEEEecCCc
Q 014433          381 SWNPCEDWVISSVAEDNI--LQIWQMAEN  407 (424)
Q Consensus       381 ~~~~~~~~~l~s~~~dg~--i~vw~~~~~  407 (424)
                      .|+|+|+.++++...++.  +.+++....
T Consensus       399 s~spdG~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        399 SVAPNGTMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            899999977776666664  666676543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=5.3e-13  Score=134.82  Aligned_cols=193  Identities=19%  Similarity=0.386  Sum_probs=152.2

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+-..|.++.-+|..+ +.+||+.||.|++|....          ...+..++ .....|+.+.|+.+|. .+..+..||
T Consensus      2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~----------~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGH----------GQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDG 2273 (2439)
T ss_pred             cccCceeeecCCCCCc-eEEecCCCceEEEEeccC----------CCeEEEeeccCcchhhhhhhcccCC-ceeeeccCC
Confidence            3457788888899887 788999999999999876          23333332 2337899999999988 589999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .+.+|.+..       ++....+.|.....++.|-.   .++++++   .++.+.+||..-+.....+.  .+|.+.+++
T Consensus      2274 ~l~l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2274 DLSLWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred             ceeecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence            999999862       34566778999999999876   3555654   57889999987655433444  689999999


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +++-|..+ +|++|+.+|.|++||+|. .+.+++++.         +.  .+.++++|+..|.++||++.....
T Consensus      2342 l~~~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2342 LAYAPKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             EEEcCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh--hhheeeccCcccceEEEEccccch
Confidence            99999887 899999999999999998 677777665         44  234799999999999999987543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=3.5e-11  Score=110.39  Aligned_cols=246  Identities=13%  Similarity=0.096  Sum_probs=153.2

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      ++++-..+|.|.|.|..+          .+.+..+......-..+.++|++. ++++++.||.|.++|+.+.+      .
T Consensus         8 ~~V~~~~~~~v~viD~~t----------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~------~   70 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGAT----------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK------V   70 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS------E
T ss_pred             EEEEecCCCEEEEEECCC----------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc------E
Confidence            335556789999999887          455666765544445678999988 68888899999999998774      3


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-------cCCCeeEEEecCCCCeEEEEE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-------HQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~tg  292 (424)
                      +..+.. ......++++++|++++++....+.+.++|.++.+.   +..+..       ....+..|..+|....++++-
T Consensus        71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~---v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP---VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E---EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc---eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            333432 445788999999999988888999999999998654   444432       234677888888777545454


Q ss_pred             eCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc-------------
Q 014433          293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA-------------  359 (424)
Q Consensus       293 ~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------  359 (424)
                      -..+.|-+.|......+...............|+|++++++++...++.|.++|.............             
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph  226 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH  226 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred             ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence            4558898999887544433333345678889999999877777777788989988765432110000             


Q ss_pred             ----------------------------CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCc
Q 014433          360 ----------------------------EDGPPELLFIHGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN  407 (424)
Q Consensus       360 ----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~  407 (424)
                                                  .....+.+......... ..+..+|+++++.+.   +...+.|.|+|..+.
T Consensus       227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence                                        00111233333333333 567789999976665   466789999999876

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=5.7e-11  Score=112.94  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=135.3

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-CC--CcEEEEeCCCCCCCCcccceeeeec
Q 014433          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD--AQICLWDINAAPKNKSLEAMQIFKV  225 (424)
Q Consensus       149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~  225 (424)
                      .|.++|.+.           .....+..+...+....|+|+++. |+..+ .+  ..|.+|++.++..       ..+..
T Consensus       180 ~l~~~d~~g-----------~~~~~l~~~~~~~~~p~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~~-------~~l~~  240 (430)
T PRK00178        180 TLQRSDYDG-----------ARAVTLLQSREPILSPRWSPDGKR-IAYVSFEQKRPRIFVQNLDTGRR-------EQITN  240 (430)
T ss_pred             EEEEECCCC-----------CCceEEecCCCceeeeeECCCCCE-EEEEEcCCCCCEEEEEECCCCCE-------EEccC
Confidence            477777665           223445567778899999999984 55444 33  3688999976632       11222


Q ss_pred             CCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEEE
Q 014433          226 HEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLF  301 (424)
Q Consensus       226 ~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iw  301 (424)
                      ..+.+...+|+|+++.++.+...+|  .|+++|+.++.    ...+..+........|+|+++.++++...+|  .|+++
T Consensus       241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            2344557899999987776666555  58888998765    2334445555677899999997666655454  57777


Q ss_pred             ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      |+.. ++ ...+...........|+|+++.++++...++  .|.++|+..+..            ..+.  .  ......
T Consensus       317 d~~~-g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------~~lt--~--~~~~~~  378 (430)
T PRK00178        317 NVNG-GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------RILT--D--TSLDES  378 (430)
T ss_pred             ECCC-CC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------EEcc--C--CCCCCC
Confidence            7765 33 2222222233456789999986555544444  477888876431            1111  1  112235


Q ss_pred             EEeCCCCCcEEEEEeCCCc--EEEEecCCc
Q 014433          380 FSWNPCEDWVISSVAEDNI--LQIWQMAEN  407 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~--i~vw~~~~~  407 (424)
                      ..|+|+|+.++++...++.  |.++++..+
T Consensus       379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        379 PSVAPNGTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            6899999976666655544  566666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.8e-11  Score=113.48  Aligned_cols=224  Identities=11%  Similarity=0.133  Sum_probs=134.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..+...+...+|+|+++.++.+...+  ..|++|++.+        +..   ..+....+.+....|+|+|..++++.+.
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--------g~~---~~l~~~~g~~~~~~~SpDG~~la~~~~~  263 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--------GRR---EQITNFEGLNGAPAWSPDGSKLAFVLSK  263 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--------CCE---EEccCCCCCcCCeEECCCCCEEEEEEcc
Confidence            35667889999999998554444333  3688999876        111   2233333445578999999854456665


Q ss_pred             CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +|  .|.+||+.++..       ..+..+........|+|+++.++.+...+|  .|+++|+.+++.    ..+......
T Consensus       264 ~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~~~~  332 (430)
T PRK00178        264 DGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFVGNY  332 (430)
T ss_pred             CCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCC
Confidence            65  578888876532       222334445667899999987776655444  477777766542    222212223


Q ss_pred             eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCCCCC
Q 014433          276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRID  351 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~  351 (424)
                      .....|+|++..++++...++  .|.++|+.+ +.. ..+.. ........|+|+|+.++++...+|.  +.++++... 
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-  408 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-  408 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCC-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence            445789999997555554444  588889886 332 22322 2223356899999876666655554  555555321 


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                                    ....+..+.+.+...+|+|-
T Consensus       409 --------------~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        409 --------------VRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             --------------ceEECcCCCCCcCCCccCCC
Confidence                          11222233445677778763

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.44  E-value=8e-12  Score=113.80  Aligned_cols=195  Identities=15%  Similarity=0.251  Sum_probs=153.5

Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe-------------------cCCCcEEEEEeCC
Q 014433          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-------------------LRHEYLFGSVGDD  249 (424)
Q Consensus       189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~~~~~~s~~~d  249 (424)
                      .+..++|....||.+++|+...++....+.+....   ++..++..|.                   ..+..+++-|...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            34448999999999999999887655444443322   2344444441                   1123466778889


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      |.|.+|++..++. ........|.+.|+++.++.+-. .|.+++.|+.+..|+... ...++.+...+..+.+++.+|++
T Consensus        80 g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   80 GSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             ccEEEEEecCCeE-EEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC
Confidence            9999999998874 11222256999999999998776 799999999999999998 78888888888999999999998


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC-----CCcEEEEEeCCCcEEEEec
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC-----EDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~dg~i~vw~~  404 (424)
                      . +|++++  +.|++||+++.              +.+..+.||.++|+.+.|...     |.++|.+...+..+.+|-+
T Consensus       157 ~-~l~~as--~~ik~~~~~~k--------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  157 K-ILLTAS--RQIKVLDIETK--------------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             C-EEEecc--ceEEEEEccCc--------------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            6 677665  56999999985              788999999999999999877     7778888888888999988


Q ss_pred             CC
Q 014433          405 AE  406 (424)
Q Consensus       405 ~~  406 (424)
                      ..
T Consensus       220 ~~  221 (541)
T KOG4547|consen  220 EK  221 (541)
T ss_pred             Ec
Confidence            66

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.43  E-value=5.7e-11  Score=108.35  Aligned_cols=199  Identities=20%  Similarity=0.284  Sum_probs=147.7

Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEec------C-------------CCCceEE
Q 014433          135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS------K-------------FKEGHLL  195 (424)
Q Consensus       135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-------------~~~~~l~  195 (424)
                      |....++|....||.++||+........    ...|...+   .+..++..|.      |             .+..+++
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~----e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQ----EFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeee----eeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence            3344589999999999999987622111    01122111   2223333331      1             1233688


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      -|...|.|.+|++..++...    ...-..|.+.|+++.++.+-. .|.+++.|+.+..|+......   +.........
T Consensus        75 lgt~~g~v~~ys~~~g~it~----~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~---~~~~~~~~~~  146 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITA----KLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI---IRIWKEQKPL  146 (541)
T ss_pred             eecCCccEEEEEecCCeEEE----EEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee---eeeeccCCCc
Confidence            89999999999998774321    222346899999999988765 556999999999999998664   6666777888


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC-----CCcEEEEEECCCeEEEeeCCCC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~-----~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +.+++.+|++. ++++++  +.|++||+.+ ++.+.+|.+|.++|++++|-..     |.++|.+...+.-+.+|-+...
T Consensus       147 ~~sl~is~D~~-~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  147 VSSLCISPDGK-ILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             cceEEEcCCCC-EEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            99999999987 687775  7899999998 8999999999999999999877     6677777777778999988764


Q ss_pred             Cc
Q 014433          351 DE  352 (424)
Q Consensus       351 ~~  352 (424)
                      ..
T Consensus       223 ~k  224 (541)
T KOG4547|consen  223 DK  224 (541)
T ss_pred             cc
Confidence            43

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=1.1e-10  Score=110.90  Aligned_cols=198  Identities=14%  Similarity=0.161  Sum_probs=125.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      .+...+...+|+|+++. ||.....   ..|++|++.+        +   ....+..+...+.+++|+|++..++++.+.
T Consensus       187 ~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~--------g---~~~~~~~~~~~~~~~~~spDg~~l~~~~~~  254 (417)
T TIGR02800       187 RSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLAT--------G---QREKVASFPGMNGAPAFSPDGSKLAVSLSK  254 (417)
T ss_pred             cCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCC--------C---CEEEeecCCCCccceEECCCCCEEEEEECC
Confidence            45567888999999985 5544432   4799999876        1   122344455667789999999865556655


Q ss_pred             CC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       200 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      ++  .|.+|++.++..       ..+..+........|+|+++.++.+....+  .|+++|+.+++    ...+..+...
T Consensus       255 ~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~  323 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY  323 (417)
T ss_pred             CCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence            55  588888876532       222234444557789999987765554444  57777877644    2334445566


Q ss_pred             eeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeC
Q 014433          276 VNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDL  347 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~  347 (424)
                      +..+.|+|++.. ++.++.++   .|.+||+.+ +. ...+.. ........|+|++..++++...++.  +.+.+.
T Consensus       324 ~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       324 NASPSWSPDGDL-IAFVHREGGGFNIAVMDLDG-GG-ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             ccCeEECCCCCE-EEEEEccCCceEEEEEeCCC-CC-eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            778899999985 55555554   788899876 32 233332 2234567899999865555554443  444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=1e-11  Score=120.03  Aligned_cols=203  Identities=11%  Similarity=0.124  Sum_probs=149.1

Q ss_pred             EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~  263 (424)
                      ..+.-... .++.+..+..+.+||.........+..-....  -....-+.+++. ...+++|+.-+.|.+|+.....  
T Consensus        93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~--l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn--  166 (967)
T KOG0974|consen   93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCT--LYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDN--  166 (967)
T ss_pred             cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEE--EEeEEEEeccCc-EEEEEeccccccEEEEeccccC--
Confidence            33333344 58888888999999997653322221100000  001112223333 3456789999999999998333  


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      ++. .+.+|.+.|.++.|+-+|. ++++.++|+++++|++.+......+.-+|...|..+.|.|+   .+++++.|.+.+
T Consensus       167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr  241 (967)
T KOG0974|consen  167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR  241 (967)
T ss_pred             Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence            233 5789999999999999998 69999999999999999855555577789999999999998   599999999999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                      +|+...               ..+..+.+|. ..|..++..+... +++|++.|+.+++|++....++...
T Consensus       242 vW~~~~---------------~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e~~~  296 (967)
T KOG0974|consen  242 VWGVNG---------------TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLEGHV  296 (967)
T ss_pred             EEeccc---------------ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccccce
Confidence            996654               2333566664 4589999998887 7999999999999999887766443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.4e-10  Score=107.57  Aligned_cols=209  Identities=10%  Similarity=0.088  Sum_probs=123.2

Q ss_pred             cCCceeEEEecCCCCc--EEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          124 HDGEVNRARYMPQNPF--LIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~--~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ....+..-+|+|+|+.  ++.+...+|  .|++.++..        +..   ..+....+.....+|+|+|..++++...
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~--------g~~---~~lt~~~g~~~~p~wSPDG~~Laf~s~~  251 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN--------PAG---KKILALQGNQLMPTFSPRKKLLAFISDR  251 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC--------CCc---eEeecCCCCccceEECCCCCEEEEEECC
Confidence            3455667799999875  323444444  577777765        222   2333344445678999999854444433


Q ss_pred             CC----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccC
Q 014433          200 DA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       200 dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~  273 (424)
                      +|    .+.+|++..+....   ...............+|+|+|+.++.+...+|...+|  ++....  .....+..+.
T Consensus       252 ~g~~di~~~~~~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~  326 (428)
T PRK01029        252 YGNPDLFIQSFSLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKY  326 (428)
T ss_pred             CCCcceeEEEeecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCC
Confidence            33    34446765431111   1111222223446789999998776565566755555  443211  1133333444


Q ss_pred             CCeeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSR  349 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~  349 (424)
                      ..+....|+|+|+.+++++..+  ..|.+||+.+ ++. ..+......+....|+|+++.+++++...  ..|.++|+..
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            5677899999999755555443  3699999986 333 33333344677899999998665555443  4577788765


Q ss_pred             C
Q 014433          350 I  350 (424)
Q Consensus       350 ~  350 (424)
                      +
T Consensus       405 g  405 (428)
T PRK01029        405 K  405 (428)
T ss_pred             C
Confidence            4

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=3.9e-11  Score=108.86  Aligned_cols=206  Identities=13%  Similarity=0.175  Sum_probs=151.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..-..++++.-...++++|+ ...|+-+++..          ..-+..+....+.++++..++... +|++|+.+|.|..
T Consensus       134 ~~GRDm~y~~~scDly~~gs-g~evYRlNLEq----------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEf  201 (703)
T KOG2321|consen  134 KFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQ----------GRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEF  201 (703)
T ss_pred             cCCccccccCCCccEEEeec-CcceEEEEccc----------cccccccccccccceeeeecCccc-eEEecccCceEEE
Confidence            34445666665555555544 45677778876          344555666678899999999766 8999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCcc-----EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee-eeccCCCeeEE
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGV-----VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCL  279 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~v  279 (424)
                      ||.+.......+........|.+.     |+++.|+.++- -+++|..+|.+.|||+|+.+.   +.. -....-+|..+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKL  277 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCc---eeecccCCccceeee
Confidence            999988766665554444455544     99999998864 568999999999999999663   332 23345689999


Q ss_pred             EecCCCC-eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          280 AFNPFNE-WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       280 ~~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .|.+.+. ..+++ .....++|||-.+ +++...+.. ...++.+++-|++. ++.++-.++.+..|=+....
T Consensus       278 ~~~~~~~q~~v~S-~Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  278 DWQDTDQQNKVVS-MDKRILKIWDECT-GKPMASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             cccccCCCceEEe-cchHHhhhccccc-CCceeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence            9977632 23444 3467899999887 777777765 56699999999986 78899988888888776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=1.3e-09  Score=112.87  Aligned_cols=261  Identities=10%  Similarity=0.111  Sum_probs=161.6

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--------------cCCCceeEEEecCCCCceE
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--------------GHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l  194 (424)
                      ..+++.+.+..++++-+.++.|++||.....           ...+.              ++-....+|++.+++. .|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~L  638 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LL  638 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EE
Confidence            4578887655578887888999999976521           11111              1112357899998776 45


Q ss_pred             EEE-eCCCcEEEEeCCCCCCCCcccce----eeeec-------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433          195 LSG-SDDAQICLWDINAAPKNKSLEAM----QIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       195 ~s~-~~dg~i~iwd~~~~~~~~~~~~~----~~~~~-------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      +++ ...+.|+++|+.++.. ..+...    ..+.+       .-....+++++|++..++++.+.++.|++||..++..
T Consensus       639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence            554 4467899999865421 000000    00000       0113468999997777888888899999999876542


Q ss_pred             CCCeeeeec---------------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce------------EecC
Q 014433          263 SKPVQSVVA---------------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH------------TFDS  315 (424)
Q Consensus       263 ~~~~~~~~~---------------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~------------~~~~  315 (424)
                          ..+.+               .-.....|+++|++..++++-+.++.|++||+.+....+.            .+..
T Consensus       718 ----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        718 ----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             ----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence                11110               1124567999999987777878889999999886321110            0100


Q ss_pred             C--------CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          316 H--------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       316 h--------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      +        -.....++++++|. ++++-..+++|++||...+...........+... -....+.-....+++++++|+
T Consensus       794 ~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d-G~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        794 HDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD-GKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             CCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC-CcccccccCCceEEEEeCCCC
Confidence            0        11346899999985 7888888999999998764321100000000000 000112223567899999998


Q ss_pred             cEEEEEeCCCcEEEEecCCccC
Q 014433          388 WVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                       ++++-+.+++|++|++.++..
T Consensus       872 -lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        872 -LFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -EEEEECCCCEEEEEECCCCcc
Confidence             788888999999999988754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1.4e-10  Score=105.21  Aligned_cols=244  Identities=17%  Similarity=0.285  Sum_probs=157.7

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce-EEE-----EeCCCc
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH-LLS-----GSDDAQ  202 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~s-----~~~dg~  202 (424)
                      .++.|+++..  +++=-..+.+++|+....          . ...-.-|...|..+.++|.+... +|+     .+.-+.
T Consensus       129 W~~qfs~dEs--l~arlv~nev~f~~~~~f----------~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~  195 (566)
T KOG2315|consen  129 WVPQFSIDES--LAARLVSNEVQFYDLGSF----------K-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS  195 (566)
T ss_pred             cccccccchh--hhhhhhcceEEEEecCCc----------c-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence            5888888764  443345678999998861          1 11223367789999999963433 333     345568


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-----------CCeEEEEEcCCCCCCCCeeeeec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-----------DQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----------dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      |+||..........+.. +.+  ....-..+.|++-+.-+|+.++.           ..+++++++.....   ... -.
T Consensus       196 vri~~~~~~~~~~~~a~-ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~---~V~-L~  268 (566)
T KOG2315|consen  196 VRIYKYPEEGQHQPVAN-KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV---SVP-LL  268 (566)
T ss_pred             EEEeccccccccchhhh-ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE---EEe-cC
Confidence            99998863322211111 111  22333467788877666554432           34688888874332   111 22


Q ss_pred             cCCCeeEEEecCCCCeEEE-EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC---CCeEEEeeC
Q 014433          272 HQSEVNCLAFNPFNEWILA-TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDL  347 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~  347 (424)
                      ..++|.++.|+|.+.-+.+ -|-.-..+.|||++  +.++..+.  .++=+++-|+|.|. +++.++.   -|.|-|||+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCC-EEEEeecCCCCCceEEEec
Confidence            4789999999999874333 35556789999999  46666654  67888999999996 5555554   478999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCCCCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHDED  413 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~  413 (424)
                      .+..              ++..+..-  .-+-+.|+|+|.+++.+..     .|+.++||+.....+...+
T Consensus       344 ~n~K--------------~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~  398 (566)
T KOG2315|consen  344 PNRK--------------LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM  398 (566)
T ss_pred             cchh--------------hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence            8743              33333322  2456899999997555444     3888999999888765443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.36  E-value=3.2e-10  Score=93.71  Aligned_cols=248  Identities=13%  Similarity=0.047  Sum_probs=157.2

Q ss_pred             EEEecCC----CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          130 RARYMPQ----NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       130 ~~~~~p~----~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      .+.|-|.    ...+||.|+..|...+|...+..         ........|...|+-+.=.-+...-+..++.|.++++
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~---------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~  142 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND---------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKT  142 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc---------cceeeecccccchhhhhhhcccccceeeccCCcceeE
Confidence            3555551    23479999999999999998621         1112222343333222111112224777889999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCc--cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEEec
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFN  282 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~  282 (424)
                      .++..+....        ..|..  .+++++++++++ +.++.++...|..|.+..... ..+. ........-.+..|+
T Consensus       143 ~~~~~~s~~~--------~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se-y~~~~~~a~t~D~gF~~S~s  212 (344)
T KOG4532|consen  143 MVVSGDSNKF--------AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE-YIENIYEAPTSDHGFYNSFS  212 (344)
T ss_pred             EEEecCcccc--------eeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccc-eeeeeEecccCCCceeeeec
Confidence            9987653321        12333  388999999987 556888889999999987553 1122 233445667889999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEe----cCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTF----DSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      .... .+|+++.||++.|||+|..+.|....    ..|++++..+.|++.|.. +|...-.-+.+.+-|+++....+...
T Consensus       213 ~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  213 ENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            8777 79999999999999999877665433    468999999999986642 34444445679999999876433221


Q ss_pred             CcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          358 DAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      -.+    ..   ...|. ..|....|+.++.- +.+.+++ .+.=|++..
T Consensus       292 i~~----d~---~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  292 IPD----DV---ERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS  332 (344)
T ss_pred             cCc----cc---cccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence            111    00   12233 33778888877763 4443433 345565544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=2.1e-09  Score=98.70  Aligned_cols=244  Identities=11%  Similarity=0.171  Sum_probs=156.3

Q ss_pred             EEEeCC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC----CCcEEEEeCCCCCC
Q 014433          142 ATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD----DAQICLWDINAAPK  213 (424)
Q Consensus       142 atg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~  213 (424)
                      .+|+..    +.|++|+++...      +........ .-......|+++|++. +|+++..    +|.|..|++.... 
T Consensus         3 ~vgsy~~~~~~gI~~~~~d~~~------g~l~~~~~~-~~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~-   73 (345)
T PF10282_consen    3 YVGSYTNGKGGGIYVFRFDEET------GTLTLVQTV-AEGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT-   73 (345)
T ss_dssp             EEEECCSSSSTEEEEEEEETTT------TEEEEEEEE-EESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT-
T ss_pred             EEEcCCCCCCCcEEEEEEcCCC------CCceEeeee-cCCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc-
Confidence            344554    789999995411      112222222 2344567799999887 6777665    5799999987642 


Q ss_pred             CCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-----------ccCCCeeEEEec
Q 014433          214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-----------AHQSEVNCLAFN  282 (424)
Q Consensus       214 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~v~~v~~~  282 (424)
                       ..+..+............++++|+++.++++...+|.|.++++.............           .......++.++
T Consensus        74 -g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   74 -GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             -TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             -ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence             23333444443445667899999999998877789999999998743221111111           123457899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcc---eEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTAL---HTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      |++++++++.-....|.+|++......+   ..+. ........++|+|+++.++++.-.++.|.++++......     
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-----  227 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-----  227 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----
Confidence            9999776666556789999998643222   1222 345678999999999877777777899999998822110     


Q ss_pred             cCCCCCeeeEEEc----CC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          359 AEDGPPELLFIHG----GH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       359 ~~~~~~~~~~~~~----~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                           ...+....    +.  ......++++|++++++++....+.|.+|++.
T Consensus       228 -----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  228 -----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             -----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             -----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence                 01111111    11  12467899999999888888788999999994

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.31  E-value=1.6e-10  Score=95.11  Aligned_cols=261  Identities=14%  Similarity=0.168  Sum_probs=147.8

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC--CCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP--PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      |+.+.+..+  ..|+++..++.+..+.........  +......+...+..|..+-.+-+.+-.+. .++++..||.+.+
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence            444445432  356666666555555443211000  00112233444554554433333333344 4999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-----eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-----GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ++.+.....     ..........-.+.+....+. ++.++     ..-+..+.|+++..+.   +.........|++++
T Consensus       116 ~s~~~~~~~-----~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~~~~~~~v~~l~  186 (319)
T KOG4714|consen  116 FSTDKDLAL-----MSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKT---LIPSKKALDAVTALC  186 (319)
T ss_pred             EechHHHhh-----hhhcccccccccccceeeccc-EEecCCcceEeeccceeeeccccccc---ccccccccccchhhh
Confidence            998752111     111111111111222223333 22222     1234456677665432   111112234499999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC-----
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT-----  355 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----  355 (424)
                      -+|..++++++|+.||.+.+||.|+...++..+..|+.+|+.+-|+|..+.-|.+++.||.+.-||....-..-.     
T Consensus       187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~  266 (319)
T KOG4714|consen  187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASV  266 (319)
T ss_pred             CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCcccc
Confidence            999999999999999999999999988888899999999999999998877899999999999999874211100     


Q ss_pred             --CCCcCCCCCeee---EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          356 --PEDAEDGPPELL---FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       356 --~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                        .....+.-...+   -.+......|+++..  .|+ .|++|+.-+.|++.+
T Consensus       267 ~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~-~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  267 ISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGP-CLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccccccCCcccceEeeeccccccceeeeeeec--cCc-eEEeccccceEEEec
Confidence              000000000101   111111223444444  467 588988888888865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=3.5e-11  Score=112.21  Aligned_cols=213  Identities=18%  Similarity=0.312  Sum_probs=156.0

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      -..+|...|+.+.|+|+.+.++|+++.|..|..||+...         ..+......-......+.|+-..++ +++.+.
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------~~p~ys~~~w~s~asqVkwnyk~p~-vlassh  178 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------HRPFYSTSSWRSAASQVKWNYKDPN-VLASSH  178 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCC---------CcceeeeecccccCceeeecccCcc-hhhhcc
Confidence            356899999999999999999999999999999999872         3445555555556778999988885 556667


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      ...|++||++.+..     ++..+++|...|+.+.|+..-...+.+++.||+|+.||......  ..........+|..-
T Consensus       179 g~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~  251 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRG  251 (1081)
T ss_pred             CCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceec
Confidence            78899999987753     56677789999999999876555667999999999999876432  111222335566666


Q ss_pred             EecCCCCeEEEEEeC-CCcEEE---------EECCCCCCcceEecCCCCCEEEEEEcCCC---------CcEEEEEECCC
Q 014433          280 AFNPFNEWILATGST-DKTVKL---------FDLRKISTALHTFDSHKEEVFQVGWNPKN---------ETILASCCLGR  340 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~-dg~i~i---------wd~~~~~~~~~~~~~h~~~v~~~~~sp~~---------~~~l~s~~~dg  340 (424)
                      .+-|.|+-..+--.. +..+.+         |+..+..+++++|.+|...|....|-..+         +.-|+|=+.|.
T Consensus       252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~  331 (1081)
T KOG0309|consen  252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ  331 (1081)
T ss_pred             cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence            777766532222111 113333         44444567899999999999888776433         24588999999


Q ss_pred             eEEEeeCCC
Q 014433          341 RLMVWDLSR  349 (424)
Q Consensus       341 ~i~iwd~~~  349 (424)
                      .+++|-+..
T Consensus       332 ~lrlWpI~~  340 (1081)
T KOG0309|consen  332 TLRLWPIDS  340 (1081)
T ss_pred             ceEeeeccH
Confidence            999999865

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=1e-10  Score=98.53  Aligned_cols=262  Identities=17%  Similarity=0.268  Sum_probs=169.5

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CceeEEEecCC-C
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKF-K  190 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~-~  190 (424)
                      ....|+++.|...|. ++|+|...|.|.+|.......     -..+-...+++|.            ..|..+.|..+ +
T Consensus        25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~-----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~   98 (460)
T COG5170          25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYG-----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG   98 (460)
T ss_pred             ccceeeEEEeccccc-eEeecCCCceEEEeecccccc-----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence            456788999988775 899999999999998765210     0112223345554            35788888754 4


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCC----------------------Ccc--------------cceeee-ecCCccEeeE
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKN----------------------KSL--------------EAMQIF-KVHEGVVEDV  233 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~----------------------~~~--------------~~~~~~-~~~~~~v~~~  233 (424)
                      ...++..+.|.+|++|.+......                      ..+              .+.+.+ ..|.-.|+++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence            456888889999999988654110                      000              111222 4577789999


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-----CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014433          234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-----SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST  308 (424)
Q Consensus       234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~  308 (424)
                      .++.+...++ + +.|-.|.+|++......-.+.-++.|.     .-|++..|+|..-.++.-.+..|.|++-|+|...-
T Consensus       179 S~NsD~et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         179 SFNSDKETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             eecCchheee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence            9998877554 3 467889999988655433333344443     35889999998877888888999999999995221


Q ss_pred             c-----ce----------EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC
Q 014433          309 A-----LH----------TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH  373 (424)
Q Consensus       309 ~-----~~----------~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h  373 (424)
                      +     +.          -+..-...|..+.|+++|+ ++++-+ =-+|+|||++....             ++++..-|
T Consensus       257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm~k~-------------pikTi~~h  321 (460)
T COG5170         257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNMAKN-------------PIKTIPMH  321 (460)
T ss_pred             ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecccccC-------------CceeechH
Confidence            1     11          1112235788999999996 555544 34799999987542             23332222


Q ss_pred             C------------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          374 T------------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       374 ~------------~~v---~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .            ..|   ..+.|+-+.. -+.+|+..+..-++-..+...
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ssg~  371 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTDSSGF  371 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeeccccCCC
Confidence            1            122   2366777776 467777777777776544433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=9.5e-10  Score=99.90  Aligned_cols=207  Identities=19%  Similarity=0.322  Sum_probs=137.8

Q ss_pred             EEEeccCCceeEEEecCC-CCcEEEE-----EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433          119 IQQINHDGEVNRARYMPQ-NPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~-~~~~lat-----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      ....-|...|+.+.++|. ....+|+     ++.-+.|+||.+.......     .....++  ....=..+.|++-+..
T Consensus       159 ~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-----~~a~ksF--Fkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  159 IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-----PVANKSF--FKADKVQMKWNKLGTA  231 (566)
T ss_pred             eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-----hhhhccc--cccceeEEEeccCCce
Confidence            333446788999999996 3445554     4556799999987411111     1111112  2223346889998887


Q ss_pred             eEEEEeC--C---------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcE-EEEEeCCCeEEEEEcCCC
Q 014433          193 HLLSGSD--D---------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       193 ~l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~~~dg~i~i~d~~~~  260 (424)
                      +|+.++.  |         .++++.+++....      ...+ ...++|.++.|+|++..+ ++.|-.-..+.|||++..
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~  304 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGESV------SVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK  304 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCceE------EEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence            7665543  2         3577777763211      1111 247899999999998644 334556788999999863


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                          ++..  -..++=+++-|+|.|..++++|..  -|.+-|||+.+ .+.+..+....  -+-+.|+|+|++ |+|++.
T Consensus       305 ----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~-flTATT  374 (566)
T KOG2315|consen  305 ----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEY-FLTATT  374 (566)
T ss_pred             ----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcE-EEEEec
Confidence                2333  346788999999999865555543  48999999998 77888877644  456899999985 545543


Q ss_pred             ------CCeEEEeeCCC
Q 014433          339 ------GRRLMVWDLSR  349 (424)
Q Consensus       339 ------dg~i~iwd~~~  349 (424)
                            |+.++||+...
T Consensus       375 aPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  375 APRLRVDNGIKIWHYTG  391 (566)
T ss_pred             cccEEecCCeEEEEecC
Confidence                  77899999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=4.9e-10  Score=95.80  Aligned_cols=226  Identities=19%  Similarity=0.309  Sum_probs=161.6

Q ss_pred             CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ....+.||.+.+++...-|..++ +++.+.|.+++||--+.. +.-+.+     ......+++++.+.+....| ++|-.
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L-~vg~~   88 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRL-YVGQD   88 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEE-EEEEe
Confidence            34567899999999998887775 999999999999965433 221111     22346789999999987654 58889


Q ss_pred             CCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEE---------------------------
Q 014433          249 DQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL---------------------------  300 (424)
Q Consensus       249 dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~i---------------------------  300 (424)
                      .|++.-+.+...-. ...++....|...+..+-|+-.-+. +++.+.|..+.-                           
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~  167 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY  167 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence            99998887653211 2234445567777777777655442 444444432221                           


Q ss_pred             ------------EECC-CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          301 ------------FDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       301 ------------wd~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                                  -.+. +.-.++.++.+|...+.+++|.|... +|.+|..|..+.+||+-...             ...
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~-------------g~~  233 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK-------------GTA  233 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc-------------cee
Confidence                        1111 01245778889999999999999874 89999999999999997543             456


Q ss_pred             EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCCCCC
Q 014433          368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGD  418 (424)
Q Consensus       368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  418 (424)
                      ..+.+|...|..+..-+.-+ .+.+++.||.|.+|+++....+..+-++.+
T Consensus       234 ~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl~s~  283 (404)
T KOG1409|consen  234 YELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWLDSD  283 (404)
T ss_pred             eeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCccccccc
Confidence            67789999999988887777 688899999999999998877666554443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=4.7e-10  Score=108.77  Aligned_cols=192  Identities=20%  Similarity=0.274  Sum_probs=143.0

Q ss_pred             EecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-----eeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       132 ~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .+.-.+. .++.++.+..+.+||.....          ....+. +...     ..-+..+++. -++++|+.-+.|.+|
T Consensus        94 ~l~~e~k-~i~l~~~~ns~~i~d~~~~~----------~~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW  160 (967)
T KOG0974|consen   94 KLFEENK-KIALVTSRNSLLIRDSKNSS----------VLSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVW  160 (967)
T ss_pred             chhhhcc-eEEEEEcCceEEEEecccCc----------eehhcC-CCceEEEEeEEEEeccCcE-EEEEeccccccEEEE
Confidence            3333344 67778888999999987621          111111 2211     1122234433 379999999999999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE  286 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~  286 (424)
                      +....+.     +. .+.+|.+.|.++.|+.++. .+++.++|.++++|++.+.+...  ....+|...|..+.|.|.  
T Consensus       161 ~~~~dn~-----p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--  229 (967)
T KOG0974|consen  161 KPHEDNK-----PI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--  229 (967)
T ss_pred             eccccCC-----cc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence            9973322     11 4678999999999999987 55799999999999999987632  355689999999999996  


Q ss_pred             eEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          287 WILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                       .++|++.|.+.++|+..  ...+..+..|. ..|..++..+... +++|++.|+.+++|++....
T Consensus       230 -~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             -eeEEeccceEEEEEecc--cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence             48999999999999766  35556777775 4789999998874 79999999999999987643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=6.7e-08  Score=83.87  Aligned_cols=244  Identities=14%  Similarity=0.173  Sum_probs=155.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeee
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIF  223 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~  223 (424)
                      +.-|++|++.+....      .. ...+..+.+.++-|+|+|+.+ +|+++-.   +|.|..|.++...  ..+..+...
T Consensus        15 s~gI~v~~ld~~~g~------l~-~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~   84 (346)
T COG2706          15 SQGIYVFNLDTKTGE------LS-LLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQ   84 (346)
T ss_pred             CCceEEEEEeCcccc------cc-hhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCC--CeEEEeecc
Confidence            467999999863222      11 223445677889999999887 5777654   5778888776431  111222222


Q ss_pred             ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC----------eeEEEecCCCCeEEEEEe
Q 014433          224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------VNCLAFNPFNEWILATGS  293 (424)
Q Consensus       224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~v~~~~~~~~~l~tg~  293 (424)
                      .....+...++++++++.+|++....|.|.++-++.............|.+.          +.+..+.|++++++++--
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            2223444889999999999888888899999999875444444344445555          888999999996555544


Q ss_pred             CCCcEEEEECCCCCCcc----eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc-CCCCcCCCCCeeeE
Q 014433          294 TDKTVKLFDLRKISTAL----HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-TPEDAEDGPPELLF  368 (424)
Q Consensus       294 ~dg~i~iwd~~~~~~~~----~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~  368 (424)
                      .--.|.+|++.. +...    ..+ .....-..|.|+|+++...+.+=.+++|.+|......... .....    ..+-.
T Consensus       165 G~Dri~~y~~~d-g~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i----~tlP~  238 (346)
T COG2706         165 GTDRIFLYDLDD-GKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI----DTLPE  238 (346)
T ss_pred             CCceEEEEEccc-Ccccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee----ccCcc
Confidence            445799999985 3321    112 3356788999999998545555569999999998742110 00000    00011


Q ss_pred             EEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       369 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .+.+ .....++..+++|++|.+|--....|.++.+...
T Consensus       239 dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         239 DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            1122 2346778899999965555444557888877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=1.4e-08  Score=95.03  Aligned_cols=257  Identities=13%  Similarity=0.203  Sum_probs=161.3

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC-----CCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL-----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      +......|+.|+.... +||+|+.||.++|..+.+.....+.     ........++.||+..|.-+.|+.+.+ .|-+.
T Consensus        12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence            3455678999998664 9999999999999998874333221     122333457889999999999998777 59999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC--------------
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------  263 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~--------------  263 (424)
                      ..+|.|.+|-+-.++-...+    .-....+.|.+++|+.+|..+ +....||.|.|=.+......              
T Consensus        90 Dt~GlIiVWmlykgsW~EEM----iNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w  164 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEM----INNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW  164 (1189)
T ss_pred             CCCceEEEEeeecccHHHHH----hhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceee
Confidence            99999999988765321111    112245678899999888644 46666776665444332110              


Q ss_pred             -------------------------------CCeee----eeccCCCeeEEEec--------CCCCeEEEEEeCCCcEEE
Q 014433          264 -------------------------------KPVQS----VVAHQSEVNCLAFN--------PFNEWILATGSTDKTVKL  300 (424)
Q Consensus       264 -------------------------------~~~~~----~~~~~~~v~~v~~~--------~~~~~~l~tg~~dg~i~i  300 (424)
                                                     .....    +......|..+.|.        |+.+ .||.+-..|.+.|
T Consensus       165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQI  243 (1189)
T ss_pred             cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehh
Confidence                                           00000    01111224445553        3455 5888888888887


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC---------eEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG  371 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      -.-.+...|+..-.  .-.+..+.|+++|. +||.++.+.         .|.+|..-               ...+.+++
T Consensus       244 MR~eND~~Pvv~dt--gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~---------------G~i~gtlk  305 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDT--GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY---------------GHIVGTLK  305 (1189)
T ss_pred             hhhcCCCCCeEEec--ccEeecceecCCCc-EEEEccCcccccCccccceEEEeccc---------------hhheEEEe
Confidence            65554334433322  36789999999995 888887653         23333221               14455555


Q ss_pred             CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .....|++++|-..|-  =+.-..|+.|.+=++...
T Consensus       306 vpg~~It~lsWEg~gL--riA~AvdsfiyfanIRP~  339 (1189)
T KOG2041|consen  306 VPGSCITGLSWEGTGL--RIAIAVDSFIYFANIRPE  339 (1189)
T ss_pred             cCCceeeeeEEcCCce--EEEEEecceEEEEeeccc
Confidence            5667788899876553  233345677766555543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=1.8e-10  Score=117.15  Aligned_cols=192  Identities=17%  Similarity=0.264  Sum_probs=144.7

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d  256 (424)
                      +-..|.++.=+|..+ +.++|+.||.|++|.-..++...   +.+.  .....|+.+.|+.+|+ -+..+..||.+.+|.
T Consensus      2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~---~~rt--~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVV---CFRT--AGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEE---Eeec--cCcchhhhhhhcccCC-ceeeeccCCceeecc
Confidence            345677777788777 68999999999999887664321   1111  2237899999999886 456888999999999


Q ss_pred             cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEE
Q 014433          257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                      +.    .++....+.|......+.|-.  . ++++++   .++.+.+||.-.+...-..-..|.+.++++++.|..+ +|
T Consensus      2280 ~~----pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-ll 2351 (2439)
T KOG1064|consen 2280 AS----PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LL 2351 (2439)
T ss_pred             cC----CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EE
Confidence            87    346777788999888888875  3 577765   3679999997654433333378999999999999984 89


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      ++|+.+|.|++||++...              +...++     .    ++ ... .+++++..|.++||+++.-.
T Consensus      2352 isggr~G~v~l~D~rqrq--------------l~h~~~-----~----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQ--------------LRHTFQ-----A----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             EecCCcCcEEEeehHHHH--------------HHHHhh-----h----hh-hhh-eeeccCcccceEEEEccccc
Confidence            999999999999998742              222221     1    44 333 68999999999999998753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=4e-10  Score=102.06  Aligned_cols=222  Identities=12%  Similarity=0.195  Sum_probs=150.0

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ..+.+....+|+..|.+++-..+. +-+++++.|.+|++|.+.......   +......+++.|+.+|.++.|..+.. +
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr-~  798 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLR-S  798 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeeccc-e
Confidence            456677777899999998876544 468889999999999998633222   23445678889999999999987654 4


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcE-EEEEeCCCeEEEEEcCCCCCCCCeeee--
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYL-FGSVGDDQYLLIWDLRTPSVSKPVQSV--  269 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~-~~s~~~dg~i~i~d~~~~~~~~~~~~~--  269 (424)
                      ++  +.||-|.+||.--+.....+   .. ....+.+..+..-+. .+.+ ++.++...+|+++|.|.......+...  
T Consensus       799 i~--ScD~giHlWDPFigr~Laq~---~d-apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna  872 (1034)
T KOG4190|consen  799 IA--SCDGGIHLWDPFIGRLLAQM---ED-APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA  872 (1034)
T ss_pred             ee--eccCcceeecccccchhHhh---hc-CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence            55  45799999998655322111   11 111222333333332 3344 444478899999999987643333322  


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE-eeCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV-WDLS  348 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i-wd~~  348 (424)
                      .+....+.+++..+.|.+ +|+|-.+|.|.+.|.|+ +..+..+..-......++- |.. +.|+....|.++.+ |...
T Consensus       873 ~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~-G~vINswrpmecdllqlaa-psd-q~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  873 PGPNALTRAIAVADKGNK-LAAALSNGCIAILDARN-GKVINSWRPMECDLLQLAA-PSD-QALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             CCCchheeEEEeccCcch-hhHHhcCCcEEEEecCC-CceeccCCcccchhhhhcC-chh-HHHHhhcccceeEeeehhc
Confidence            334466899999999985 89999999999999998 6777666654444444443 333 36777777888888 7655


Q ss_pred             CC
Q 014433          349 RI  350 (424)
Q Consensus       349 ~~  350 (424)
                      .+
T Consensus       949 dg  950 (1034)
T KOG4190|consen  949 DG  950 (1034)
T ss_pred             CC
Confidence            43

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=1.5e-08  Score=95.70  Aligned_cols=245  Identities=18%  Similarity=0.191  Sum_probs=168.8

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-----------Cce
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-----------EGH  193 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~  193 (424)
                      ...-.++.|+|.|  +||-|+. ..|.|-|..+          .+.+..+.-|...|+.+.|.|..           .-+
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ll   81 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLL   81 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhh----------hhhhhccccCccceeEEEeccCCCchhccCcccccee
Confidence            3345678999977  7888764 5788888776          56677788899999999998742           115


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec---CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      |+++...|.|.+||......      +..+..|..++.+++|-+   +.+.++++-....++.+|+..++..   +-...
T Consensus        82 iAsaD~~GrIil~d~~~~s~------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~  152 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLASV------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYD  152 (1062)
T ss_pred             EEeccccCcEEEEEehhhhh------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccc
Confidence            78888899999999987643      233455778899999865   3446777888889999999999874   44444


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---CcceEe---cCCCC------------C-------------
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---TALHTF---DSHKE------------E-------------  319 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~---~~h~~------------~-------------  319 (424)
                      .......|+.++|.....+..-+..|.+.+-+.-...   .+.+.+   ..|..            .             
T Consensus       153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity  232 (1062)
T KOG1912|consen  153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY  232 (1062)
T ss_pred             cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence            4556788899999877667777777877777653212   122222   12211            0             


Q ss_pred             EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCCc
Q 014433          320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDNI  398 (424)
Q Consensus       320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~  398 (424)
                      ...++|+|.-++++... .-..+.|+|+...              .++....-..+.+.-+.|-|+.+ ..|.+.-.||.
T Consensus       233 ~a~faf~p~~rn~lfi~-~prellv~dle~~--------------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~  297 (1062)
T KOG1912|consen  233 CAQFAFSPHWRNILFIT-FPRELLVFDLEYE--------------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR  297 (1062)
T ss_pred             HHhhhcChhhhceEEEE-eccceEEEcchhh--------------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence            13467788776655443 4556999999864              33444433445566677777653 26888889999


Q ss_pred             EEEEecCC
Q 014433          399 LQIWQMAE  406 (424)
Q Consensus       399 i~vw~~~~  406 (424)
                      +.+|.-+.
T Consensus       298 ltirvrk~  305 (1062)
T KOG1912|consen  298 LTIRVRKE  305 (1062)
T ss_pred             EEEEEeec
Confidence            99997654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.13  E-value=5.2e-11  Score=109.59  Aligned_cols=211  Identities=18%  Similarity=0.308  Sum_probs=143.7

Q ss_pred             CceeEEEecCCC-CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe----CC
Q 014433          126 GEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----DD  200 (424)
Q Consensus       126 ~~v~~~~~~p~~-~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~d  200 (424)
                      ..+.|+++.-+. +-++++|..+|.|-+-.+....        -.......+|...+++++|++-..+.||+|-    .|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd  128 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND  128 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------cccceecccccccccccccccccHHHHHhhhhhhccc
Confidence            355666665533 3589999999999999887621        1123345678889999999998777777774    36


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ..+.|||+.+.-..+.-... ...+......+++|..+.+ ++.+|.....++++|+|.....  ...  -.+..+..+.
T Consensus       129 s~~~Iwdi~s~ltvPke~~~-fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~--~~s--vnTk~vqG~t  202 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPL-FSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDS--VSS--VNTKYVQGIT  202 (783)
T ss_pred             CCccceecccccCCCccccc-cccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhh--hhh--hhhhhcccce
Confidence            78999999876332111111 1112344566899997765 5568888899999999954321  111  1234556677


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEE-CCCCCCcceEecCCCC----CEEEEEEcCCCCcEEEEEECC-CeEEEeeCCCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFD-LRKISTALHTFDSHKE----EVFQVGWNPKNETILASCCLG-RRLMVWDLSRID  351 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd-~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~l~s~~~d-g~i~iwd~~~~~  351 (424)
                      .+|....++++- .||.|.+|| .++...++..+...+.    .+..++|+|....++++.+.| ++|+++|+....
T Consensus       203 Vdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  203 VDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             ecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            777555556554 599999999 7776666666554333    499999999877778888775 679999987644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1.9e-07  Score=87.50  Aligned_cols=197  Identities=10%  Similarity=0.018  Sum_probs=119.2

Q ss_pred             ceeEEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC--CeEEE
Q 014433          180 EGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLI  254 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i  254 (424)
                      ....-.|+|++...++..+.   +..|.++|+.++..       ..+....+......|+|+++.++++.+.+  ..|.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  261 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL  261 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence            67789999999853544333   35688889876632       11222345566778999998887666544  46778


Q ss_pred             EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcE
Q 014433          255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  332 (424)
                      +|+..+.    ...+..+........|+|+|+.++++....+  .|.+.|+.. +.. ..+......  ...|+|+|+.+
T Consensus       262 ~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g~~--~~~~SPDG~~I  333 (419)
T PRK04043        262 YDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHGKN--NSSVSTYKNYI  333 (419)
T ss_pred             EECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCCCc--CceECCCCCEE
Confidence            8887654    2333333333445689999997766665544  577778775 332 222211111  24899999866


Q ss_pred             EEEEECC--------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc--EEEE
Q 014433          333 LASCCLG--------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI--LQIW  402 (424)
Q Consensus       333 l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--i~vw  402 (424)
                      +++....        ..|.+.|+..+..            ..+   ... .......|+|+|+.++++....+.  +.+.
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~------------~~L---T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDYI------------RRL---TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCCe------------EEC---CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            6555443        3577777765431            111   111 123358899999966665544444  5566


Q ss_pred             ecCCc
Q 014433          403 QMAEN  407 (424)
Q Consensus       403 ~~~~~  407 (424)
                      ++..+
T Consensus       398 ~l~g~  402 (419)
T PRK04043        398 RLNYN  402 (419)
T ss_pred             ecCCC
Confidence            66554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=1e-07  Score=89.39  Aligned_cols=196  Identities=13%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             CceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433          126 GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--  200 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--  200 (424)
                      +.+...+|+|+++.+++..+.   ...|+++|+.+        +   ....+....+......|+|+|..++++.+.+  
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--------g---~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~  256 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--------G---KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--------C---cEEEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence            466789999999754443332   35788888876        1   1223333455566788999998666666555  


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      ..|.++|+.++..       ..+..+........|+|+++.++.+....+  .|.++|+.++..    ..+.....  ..
T Consensus       257 ~~Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~g~--~~  323 (419)
T PRK04043        257 PDIYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFHGK--NN  323 (419)
T ss_pred             cEEEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccCCC--cC
Confidence            4577778765521       122223333345689999988776665444  577778876553    11111111  12


Q ss_pred             EEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe--EEEeeCC
Q 014433          279 LAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLS  348 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~  348 (424)
                      ..|+|+|+.++++....        ..|.+.|+.. +. ...+... .......|+|+|+.++++....+.  +.+.++.
T Consensus       324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            48999999766665543        3688888876 33 3334332 233468999999866666554444  4444553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.11  E-value=1e-07  Score=85.77  Aligned_cols=254  Identities=14%  Similarity=0.057  Sum_probs=140.6

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCc
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE  180 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~  180 (424)
                      +++..+.-......+ ++|+++.+.++.+         .+..|.+||..+          .+....+.--       ...
T Consensus        38 ~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t----------~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        38 RVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT----------HLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             EEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc----------CcEEeEEccCCCchhhccCc
Confidence            334444433333344 9999987777777         789999999988          3444333321       222


Q ss_pred             eeEEEecCCCCceEEEEe-C-CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          181 GYGLSWSKFKEGHLLSGS-D-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ...++++|+|+ +|+... . +..|.+.|+.+++....+      .. .+...-...++. .++  +-+.||......+.
T Consensus       107 ~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei------~v-p~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d  175 (352)
T TIGR02658       107 PWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMM------DV-PDCYHIFPTAND-TFF--MHCRDGSLAKVGYG  175 (352)
T ss_pred             cceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEE------eC-CCCcEEEEecCC-ccE--EEeecCceEEEEec
Confidence            34789999998 455444 4 789999999887543222      11 111111112111 111  22344444443333


Q ss_pred             CCCCCC--CeeeeeccCCCeeE-EEecC-CCCeEEEEEeCCCcEEEEECCCC----CCcceEecC-------CCCCEEEE
Q 014433          259 TPSVSK--PVQSVVAHQSEVNC-LAFNP-FNEWILATGSTDKTVKLFDLRKI----STALHTFDS-------HKEEVFQV  323 (424)
Q Consensus       259 ~~~~~~--~~~~~~~~~~~v~~-v~~~~-~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~-------h~~~v~~~  323 (424)
                      ......  ....+..-..++.. -.|.+ ++.. +.+... |+|.+.|+...    ..++..+..       ..+.+.-+
T Consensus       176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             CCCceEEeeeeeecCCccccccCCceEcCCCcE-EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence            221100  00001010011100 03445 6764 444443 99999997542    122222221       23344559


Q ss_pred             EEcCCCCcEEEEEE---------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEE
Q 014433          324 GWNPKNETILASCC---------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSV  393 (424)
Q Consensus       324 ~~sp~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~  393 (424)
                      +++|+++.+++...         ..+.|.++|..+.              +.+..+.. ...+..++++|+++ .++++.
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--------------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--------------KRLRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--------------eEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            99999986665442         1257999998875              33333332 23689999999999 555565


Q ss_pred             eCCCcEEEEecCCccC
Q 014433          394 AEDNILQIWQMAENIY  409 (424)
Q Consensus       394 ~~dg~i~vw~~~~~~~  409 (424)
                      ..++.|.+.|..++..
T Consensus       319 ~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       319 TGDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCCcEEEEECcCCeE
Confidence            5789999999988854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.05  E-value=1.2e-09  Score=89.90  Aligned_cols=151  Identities=12%  Similarity=0.147  Sum_probs=100.3

Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-----CCcEEEEECCCCCCcceEecCC
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-----DKTVKLFDLRKISTALHTFDSH  316 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~h  316 (424)
                      -+++++.||.+.+++.+.-..  .......-...-.+.+....+. ++.++..     -+..+.|+++..+..+..... 
T Consensus       103 ~V~~~~~dg~~~v~s~~~~~~--~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-  178 (319)
T KOG4714|consen  103 RVCIGYADGSLAVFSTDKDLA--LMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-  178 (319)
T ss_pred             ceEecCCCceEEEEechHHHh--hhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc-
Confidence            357999999999999876221  1111111111222233333344 3333321     234566776653333222222 


Q ss_pred             CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      ...|++++-+|..+.++++|+.||.+.+||.++..             .....+..|...|+.+.|+|..+--|.++++|
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            23499999999998899999999999999999863             22334578999999999999877678899999


Q ss_pred             CcEEEEecCCccC
Q 014433          397 NILQIWQMAENIY  409 (424)
Q Consensus       397 g~i~vw~~~~~~~  409 (424)
                      |.+-.||-++..+
T Consensus       246 Gslw~wdas~~~l  258 (319)
T KOG4714|consen  246 GSLWHWDASTTFL  258 (319)
T ss_pred             CcEEEEcCCCceE
Confidence            9999999986544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=8.1e-08  Score=87.50  Aligned_cols=122  Identities=19%  Similarity=0.363  Sum_probs=78.3

Q ss_pred             CCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCC-CCCc--ceEecCCCCCEEEEEEcCCCCcEEEEE--ECCCeEEEe
Q 014433          273 QSEVNCLAFNPFNEWILATGST--DKTVKLFDLRK-ISTA--LHTFDSHKEEVFQVGWNPKNETILASC--CLGRRLMVW  345 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~-~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~--~~dg~i~iw  345 (424)
                      ...|...+|.|.|..+.+..+.  ..++.+|-+.+ ...+  +..+.  ....+.+.|+|.|+.+++++  |..|.+.++
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence            4567888999999864444333  35789998873 2332  33333  46678899999997544433  347889999


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-----CCCcEEEEecCCccCC
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYH  410 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~dg~i~vw~~~~~~~~  410 (424)
                      |+......             ......|. ..+.+.|.|.|+|+..+.+     .|.--++|++....+.
T Consensus       523 D~~~a~~k-------------~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~  578 (698)
T KOG2314|consen  523 DTDYADLK-------------DTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK  578 (698)
T ss_pred             ecchhhhh-------------hccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence            98752211             11112233 3678999999997444433     3666788998877553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.03  E-value=8.1e-09  Score=87.33  Aligned_cols=223  Identities=18%  Similarity=0.283  Sum_probs=144.8

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC------------ccEeeEEEecC-CCcEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE------------GVVEDVAWHLR-HEYLF  243 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~-~~~~~  243 (424)
                      ....|+++.|...|. +|++|...|.|.++.-+... ....+....+++|.            ..|+.+.|..+ ++.-|
T Consensus        25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEeccccc-eEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            345689999988777 89999999999999765432 22222333344443            35778888654 44456


Q ss_pred             EEEeCCCeEEEEEcCCCCCC---------------------------------------CCeeee-eccCCCeeEEEecC
Q 014433          244 GSVGDDQYLLIWDLRTPSVS---------------------------------------KPVQSV-VAHQSEVNCLAFNP  283 (424)
Q Consensus       244 ~s~~~dg~i~i~d~~~~~~~---------------------------------------~~~~~~-~~~~~~v~~v~~~~  283 (424)
                      ...+.|.+|++|.+......                                       ++.+.. .+|.-.++++.|+.
T Consensus       103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            67789999999988654100                                       011111 45677789999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcce--EecCCC-----CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc--
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALH--TFDSHK-----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ--  354 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~~h~-----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~--  354 (424)
                      +.+. +++ ..|-.|.+|.+........  .++.|+     .-|++..|+|..-.++.-.+..|.|++-|++....-.  
T Consensus       183 D~et-~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         183 DKET-LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             chhe-eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            8874 444 4577899999886544433  233443     3589999999877788888889999999998532110  


Q ss_pred             --CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          355 --TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       355 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                        ......++  .-.--+.+-.+.|.++.|+++|+| |++-+ =.+|+|||+.-.
T Consensus       261 ~klfe~~~D~--v~~~ff~eivsSISD~kFs~ngry-IlsRd-yltvkiwDvnm~  311 (460)
T COG5170         261 KKLFELTIDG--VDVDFFEEIVSSISDFKFSDNGRY-ILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhccCc--ccchhHHHHhhhhcceEEcCCCcE-EEEec-cceEEEEecccc
Confidence              00000000  000111222456899999999994 66644 467999998643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.8e-07  Score=97.29  Aligned_cols=209  Identities=11%  Similarity=0.098  Sum_probs=135.0

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----------------CCceeEEEecCC
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----------------STEGYGLSWSKF  189 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~~~  189 (424)
                      ....|++.+++..++++-..++.|+++|..+.           .+.++.+-                 -....+++++|+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~  693 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV  693 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC
Confidence            35778898877645555555678999997651           11111110                 113468999996


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeeec------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFKV------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      +..++++.+.++.|++||..++... .+..   .....+      .-...+.|+++|++..++++-+.++.|++||+.++
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg  772 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG  772 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            5556777778899999998765210 0000   000000      11345679999999888888888999999999865


Q ss_pred             CCCC----------Ceeeeec--------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------
Q 014433          261 SVSK----------PVQSVVA--------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------  315 (424)
Q Consensus       261 ~~~~----------~~~~~~~--------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------  315 (424)
                      ....          ....+..        .-.....++++++|. ++++-..++.|++||..+ +.. .++.+       
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g~v-~tiaG~G~~G~~  849 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-KRV-TTLAGTGKAGFK  849 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-CeE-EEEeccCCcCCC
Confidence            4200          0000000        011246889999887 788888899999999876 322 22221       


Q ss_pred             -------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          316 -------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       316 -------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                             .-.....++++++|. ++++.+.++.|++||+.+..
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence                   113567899999995 88888889999999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=2.8e-06  Score=74.32  Aligned_cols=224  Identities=14%  Similarity=0.102  Sum_probs=143.0

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  209 (424)
                      ++.|.+....++.+-...+.|+.|+...           .....+... . ..++++...+. .|+.+...+ +.++|+.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~~~~~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~   68 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GEVEVIDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPD   68 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT-----------TEEEEEESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCC-----------CeEEEEecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecC
Confidence            5788885556888877889999999876           112222222 2 67788873333 466666654 4555887


Q ss_pred             CCCCCCcccceeeee--c-CCccEeeEEEecCCCcEEEEEeCC--------CeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          210 AAPKNKSLEAMQIFK--V-HEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       210 ~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~s~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      +++.    ..+....  . .....+++++.++|. ++++....        |.|..++.. ++    +......-...+.
T Consensus        69 ~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNG  138 (246)
T PF08450_consen   69 TGKV----TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNG  138 (246)
T ss_dssp             TTEE----EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEE
T ss_pred             CCcE----EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccc
Confidence            6522    2222221  1 346789999999987 55565433        557777766 33    2333333456789


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCC------cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKIST------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      |+|+|+++.++++-+..+.|..|++.....      .+..+....+..-.+++..+|. +.++....+.|.+++.. +  
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G--  214 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G--  214 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S--
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c--
Confidence            999999997777888889999999975333      1122222223478899999995 77777788899999987 3  


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEe-CCCCCcEEEEEe
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSW-NPCEDWVISSVA  394 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~  394 (424)
                                  .++....-....+++++| .++...|++|.+
T Consensus       215 ------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  215 ------------KLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             ------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence                        344444433447899999 466665777754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=2e-06  Score=72.62  Aligned_cols=240  Identities=10%  Similarity=0.075  Sum_probs=133.6

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      ++.+++|+ +||. -.|..|.|-.....        -...+.+..-.+   -.-..++|+|++. +||.+...|+|+++|
T Consensus         3 ~~~~~~Gk-~lAi-~qd~~iEiRsa~Dd--------f~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfd   71 (282)
T PF15492_consen    3 LALSSDGK-LLAI-LQDQCIEIRSAKDD--------FSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFD   71 (282)
T ss_pred             eeecCCCc-EEEE-EeccEEEEEeccCC--------chheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEe
Confidence            45667776 5665 45777777665541        112222222222   2457899999888 899999999999999


Q ss_pred             CCCCCCCCcccceeeee-cCCccEeeEEEecCC-----CcEEEEEeCCCeEEEEEcCCC--CCCCCeeeee---ccCCCe
Q 014433          208 INAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTP--SVSKPVQSVV---AHQSEV  276 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~i~d~~~~--~~~~~~~~~~---~~~~~v  276 (424)
                      +.... ...+.+..... .....|..+.|.+..     ...|.+....|.++-|-+..+  +.-+....+.   .+...|
T Consensus        72 l~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   72 LMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             cccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence            97532 12222211111 123466677675432     224446677888887776432  2112222222   246789


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE-EEECCCe------EEEeeCCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA-SCCLGRR------LMVWDLSR  349 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~-s~~~dg~------i~iwd~~~  349 (424)
                      +++.++|..+ +|++|+....      ..  .   .-.+....+++-..-.+.+++.. +...|+.      -.+|.+-+
T Consensus       151 ~~~vy~p~h~-LLlVgG~~~~------~~--~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  151 NSAVYHPKHR-LLLVGGCEQN------QD--G---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             eEEEEcCCCC-EEEEeccCCC------CC--c---cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence            9999999877 5555553221      00  0   01122334444444333333222 2222221      12232221


Q ss_pred             CCcccCCCCcCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          350 IDEEQTPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                                     ..++.. ......|..+..+|+|. +||+...+|.|.+|++..-.+.
T Consensus       219 ---------------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  219 ---------------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             ---------------eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhh
Confidence                           111221 22356799999999999 8999999999999999775443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.01  E-value=1.5e-07  Score=78.24  Aligned_cols=196  Identities=10%  Similarity=0.050  Sum_probs=126.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      +|+.|+.-|...+|...+...     .+.....|...|+-+.=..+...-+..++.|.+++++++..+.....++.  . 
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~--~-  157 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN--Q-  157 (344)
T ss_pred             EEEeccccceeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec--c-
Confidence            699999999999999986532     12222223332222111111122233677888888888876554222221  1 


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      .-.+++++++++++ ++++.+....|..|.+...+..+..  .......-.+..|+.... .+|++..||++.|||++..
T Consensus       158 ~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             ccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence            12388999999998 5888888889999999875544333  223345567889999885 7999999999999999986


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcEEEEecCCc
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~  407 (424)
                      ...-..         ....-..|.+.+..+.|++-|.. ||.-.-.=+.+.|-|+.+.
T Consensus       236 ~tpm~~---------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  236 ATPMAE---------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             ccchhh---------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            532211         11122357889999999986642 2333233467888888776

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.99  E-value=2.1e-07  Score=78.42  Aligned_cols=201  Identities=14%  Similarity=0.213  Sum_probs=110.8

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCC-----CceEEEEeCCCc
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-----EGHLLSGSDDAQ  202 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-----~~~l~s~~~dg~  202 (424)
                      ..++|+||+. +||.+...|+|++||+.......     ..+..... .-...|.++.|.+..     ...|++-..+|.
T Consensus        47 Rkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~-----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~  120 (282)
T PF15492_consen   47 RKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFV-----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ  120 (282)
T ss_pred             eEEEECCCCc-EEEEEcCCCeEEEEecccceeEE-----cCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence            4689999987 89999999999999997521110     00000011 123456677675533     224677778888


Q ss_pred             EEEEeCCCCCCCCcccceeee---ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          203 ICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      ++-|-+..+.. ........+   ..+...|+++.++|..+.+++.|+....-...              .+....+++-
T Consensus       121 L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s--------------~a~~~GLtaW  185 (282)
T PF15492_consen  121 LRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS--------------KASSCGLTAW  185 (282)
T ss_pred             eeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc--------------cccccCceEE
Confidence            88887633211 111112222   23467899999999987666555444310000              0112223332


Q ss_pred             EecCCCCeEEE-EEeCCCc------EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          280 AFNPFNEWILA-TGSTDKT------VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       280 ~~~~~~~~~l~-tg~~dg~------i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ..-.+.+++.- +...|+.      ..+|.+-+ .............|..+..||+|. +||+...+|.|.+|++.....
T Consensus       186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEcCCCCcEEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence            22222222221 1111211      12222221 000111122467899999999995 899999999999999987654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.99  E-value=3.1e-07  Score=93.78  Aligned_cols=278  Identities=17%  Similarity=0.224  Sum_probs=162.4

Q ss_pred             CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC-----------CC--C----------C--CC-C
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP-----------SK--P----------P--LD-G  166 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~-----------~~--~----------~--~~-~  166 (424)
                      ...++++-.  -...|.+++||||+. +||..+.++++.+-..+-..           ..  .          +  +. +
T Consensus       110 ~~~~E~VG~--vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~g  186 (928)
T PF04762_consen  110 EDEIEIVGS--VDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAG  186 (928)
T ss_pred             CceeEEEEE--EcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchh
Confidence            344454443  367899999999987 77777888888886643100           00  0          0  00 0


Q ss_pred             C------CCCc------EEEecCCCceeEEEecCCCCceEEEEeC---C---CcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433          167 A------CSPD------LRLRGHSTEGYGLSWSKFKEGHLLSGSD---D---AQICLWDINAAPKNKSLEAMQIFKVHEG  228 (424)
Q Consensus       167 ~------~~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  228 (424)
                      +      ..+.      ..+. +...-..|+|-.+|. +||+.+.   .   ..++||+-+ +..      ......-.+
T Consensus       187 K~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L------~stSE~v~g  257 (928)
T PF04762_consen  187 KAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GEL------QSTSEPVDG  257 (928)
T ss_pred             hhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceE------EeccccCCC
Confidence            0      0000      1122 334556899999998 7877664   2   579999875 211      111112233


Q ss_pred             cEeeEEEecCCCcEEEEEeC---CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433          229 VVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~  305 (424)
                      --.+++|.|.|. ++|+...   ...|.+|.-+.-+.......+......|..++|++++. +||.-..|. |.+|-..+
T Consensus       258 Le~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  258 LEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             ccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeC
Confidence            345789999996 6666543   34466665433221111111123456799999999998 788876554 99998877


Q ss_pred             CCC-cceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC----CCccc------------------CCCCcCC
Q 014433          306 IST-ALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR----IDEEQ------------------TPEDAED  361 (424)
Q Consensus       306 ~~~-~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~----~~~~~------------------~~~~~~~  361 (424)
                      ..= ..+.+.. ....+..+.|+|..+..|...+.+|.+..+++.-    .....                  .+....-
T Consensus       335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V  414 (928)
T PF04762_consen  335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV  414 (928)
T ss_pred             CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence            321 2222222 2334556999998877788888777776655432    11100                  0000111


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .||-..+.+. -...|.+++|++++. .+++-..||.|.+|.....
T Consensus       415 PPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  415 PPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence            2222233332 346799999999987 4777788999999996554

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=2.7e-09  Score=96.83  Aligned_cols=217  Identities=16%  Similarity=0.237  Sum_probs=140.2

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                      ...+.||...|..++-..+.. -+++++.|.+|++|.++..... .+..+..+++.|+.+|.++-|..+.+.+   ++.|
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i---~ScD  803 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI---ASCD  803 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee---eecc
Confidence            346778999998887666555 5999999999999999754322 2333566778899999999999876533   4568


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCCCcceEec-----CCCCCEEE
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKISTALHTFD-----SHKEEVFQ  322 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~  322 (424)
                      |.|++||.--+.....+.--.. .+.+..+..-++ .+.++.+| +...+|+++|.|. ..-...++     +.+..+.+
T Consensus       804 ~giHlWDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             CcceeecccccchhHhhhcCcc-cCCCceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeE
Confidence            9999999876553211111111 223333333333 33355555 6788999999997 44333332     44567899


Q ss_pred             EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE-
Q 014433          323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI-  401 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v-  401 (424)
                      ++..+.|. .++++-..|+|.+.|.+++...              ...+.-.-....++ .|..+ .++....|.++.| 
T Consensus       882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~vI--------------Nswrpmecdllqla-apsdq-~L~~saldHslaVn  944 (1034)
T KOG4190|consen  882 IAVADKGN-KLAAALSNGCIAILDARNGKVI--------------NSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVN  944 (1034)
T ss_pred             EEeccCcc-hhhHHhcCCcEEEEecCCCcee--------------ccCCcccchhhhhc-CchhH-HHHhhcccceeEee
Confidence            99999996 6889999999999999987422              11111111122222 23344 4566666777777 


Q ss_pred             EecCCccCC
Q 014433          402 WQMAENIYH  410 (424)
Q Consensus       402 w~~~~~~~~  410 (424)
                      |.-..++..
T Consensus       945 Whaldgimh  953 (1034)
T KOG4190|consen  945 WHALDGIMH  953 (1034)
T ss_pred             ehhcCCeee
Confidence            766666543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=4.7e-08  Score=85.63  Aligned_cols=221  Identities=14%  Similarity=0.134  Sum_probs=131.3

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ++..-+.+|...|.+++|+|...+++..++.+..|.|.|+++...      ...+..+ ..+++++|.-+..+.+.+|-.
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEecc
Confidence            334456778889999999999888899999999999999987643      3334445 789999999999999999999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeec--cCCCeeEEEec------CCCCeEEEEEeCCCcEEEEECCCCC-C--cceEecCCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFN------PFNEWILATGSTDKTVKLFDLRKIS-T--ALHTFDSHK  317 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~v~~~------~~~~~~l~tg~~dg~i~iwd~~~~~-~--~~~~~~~h~  317 (424)
                      .|.|.|||+|..+.  ++..+.+  ...+|..++.-      +.+. +|+....+  +..|.+.... .  ++..+. ..
T Consensus       257 nG~VlvyD~R~~~~--~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele-~p  330 (463)
T KOG1645|consen  257 NGMVLVYDMRQPEG--PLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELE-PP  330 (463)
T ss_pred             CceEEEEEccCCCc--hHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence            99999999998764  2222222  23455554432      2343 34443332  4556554311 1  222222 24


Q ss_pred             CCEEEEEEcCCCCcEEEEEECCCe---EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC----CCC---cceEEeCCCCC
Q 014433          318 EEVFQVGWNPKNETILASCCLGRR---LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH----TSK---ISDFSWNPCED  387 (424)
Q Consensus       318 ~~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~~  387 (424)
                      +...+++..+..+.+|++.-.+-+   ++.-=.+.        +..++.+.+. .-.++    ...   -..+.-.++.+
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~--------d~~dG~pVc~-~r~~~~Gs~~~kl~t~~ai~~~~~nn  401 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRI--------DFRDGFPVCG-KRRTYFGSKQTKLSTTQAIRAVEDNN  401 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeee--------ccccCceeee-ecccccCCcccccccccceecccccc
Confidence            566777777766667776655311   11000000        0000100100 00111    000   11122234557


Q ss_pred             cEEEEEeCCCcEEEEecCCccCCC
Q 014433          388 WVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                      +++..++..+.+.+||+.+..+..
T Consensus       402 ~iv~~gd~tn~lil~D~~s~evvQ  425 (463)
T KOG1645|consen  402 YIVVVGDSTNELILQDPHSFEVVQ  425 (463)
T ss_pred             EEEEecCCcceeEEeccchhheee
Confidence            677777888999999999876543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=4.6e-09  Score=90.03  Aligned_cols=146  Identities=21%  Similarity=0.261  Sum_probs=110.4

Q ss_pred             EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----CCcceEecCCCCCE
Q 014433          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----STALHTFDSHKEEV  320 (424)
Q Consensus       245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~h~~~v  320 (424)
                      +.+.+..+-+-|+.++-.    +.+ ...+.|.++.|...++ ++..|..+|.|..+|+|..    +.+.+.+ .|.+.|
T Consensus       229 s~G~sqqv~L~nvetg~~----qsf-~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv  301 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQ----QSF-QSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV  301 (425)
T ss_pred             cccccceeEEEEeecccc----ccc-ccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence            566778899999988653    222 2578899999998776 8999999999999999974    3344444 478999


Q ss_pred             EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE--EeCCCCCcEEEEEeCCCc
Q 014433          321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF--SWNPCEDWVISSVAEDNI  398 (424)
Q Consensus       321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~~~dg~  398 (424)
                      +++..-...+++|++.+.+|+|++||++..++.           .-+..+.||.+.-.-+  ..++... +++++|.|..
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----------~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcy  369 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----------KSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCY  369 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcc-----------cceeeeecccccccccccccccccc-eEEEccCeeE
Confidence            999887744467889999999999999976432           2366778886543333  3345555 7888999999


Q ss_pred             EEEEecCCccC
Q 014433          399 LQIWQMAENIY  409 (424)
Q Consensus       399 i~vw~~~~~~~  409 (424)
                      .+||.+..+-+
T Consensus       370 tRiWsl~~ghL  380 (425)
T KOG2695|consen  370 TRIWSLDSGHL  380 (425)
T ss_pred             EEEEecccCce
Confidence            99999997744

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=2.3e-07  Score=87.88  Aligned_cols=269  Identities=17%  Similarity=0.167  Sum_probs=171.7

Q ss_pred             ccCCceeEEEecCC-----------CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--
Q 014433          123 NHDGEVNRARYMPQ-----------NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--  189 (424)
Q Consensus       123 ~h~~~v~~~~~~p~-----------~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--  189 (424)
                      .|+..|+.++|.|-           ...+||++...|.|.+||...          ...+..+..|..++..++|-+.  
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------ASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------hhhhhhhcCCCcchhheeeeeccC
Confidence            36788999999772           234788899999999999987          4556678889999999999764  


Q ss_pred             -CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-C---C
Q 014433          190 -KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-S---K  264 (424)
Q Consensus       190 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~---~  264 (424)
                       ...+|++-....++.+|+..++.....      .........|+.+.|.+..-|..-+..|.+.+.+.-..+. .   +
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk  196 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK  196 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeec------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence             224677777778999999998854322      2223456677999997766666666778777776543211 1   1


Q ss_pred             CeeeeeccCC----------------C---------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC
Q 014433          265 PVQSVVAHQS----------------E---------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE  319 (424)
Q Consensus       265 ~~~~~~~~~~----------------~---------v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~  319 (424)
                      .++....|..                .         .-.++|+|.-++++... ....+.++|+.- ..++.......+.
T Consensus       197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~-~~~l~vvpier~~  274 (1062)
T KOG1912|consen  197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEY-ECCLAVVPIERGG  274 (1062)
T ss_pred             eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchh-hceeEEEEeccCC
Confidence            1111111111                0         12346788777655443 567899999987 5777777777777


Q ss_pred             EEEEEEcCCCC-cEEEEEECCCeEEEeeCCCCCcccCCCCc-----CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE
Q 014433          320 VFQVGWNPKNE-TILASCCLGRRLMVWDLSRIDEEQTPEDA-----EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       320 v~~~~~sp~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  393 (424)
                      +.-+.|-|+++ ..|.+...||.+.||-.+....+......     ......++....  .-.+......|..+..++.-
T Consensus       275 akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl  352 (1062)
T KOG1912|consen  275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSALAVL  352 (1062)
T ss_pred             cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChhhhhhh
Confidence            77788887653 36888999999999987664333222110     011112222222  12233444556543344444


Q ss_pred             eCCCcEEEEecCCccCCC
Q 014433          394 AEDNILQIWQMAENIYHD  411 (424)
Q Consensus       394 ~~dg~i~vw~~~~~~~~~  411 (424)
                      -.+|.+.+|.+..+....
T Consensus       353 ~s~g~~~~w~l~~~ri~~  370 (1062)
T KOG1912|consen  353 YSSGDSTFWQLSNGRIHL  370 (1062)
T ss_pred             hhcchhHHHhhhcCCcCc
Confidence            457889999999776544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=3.9e-08  Score=86.17  Aligned_cols=159  Identities=15%  Similarity=0.198  Sum_probs=104.6

Q ss_pred             EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEE--EeCCCeEEEEEcCCCC
Q 014433          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS--VGDDQYLLIWDLRTPS  261 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s--~~~dg~i~i~d~~~~~  261 (424)
                      +..++.+. +||++..+....++++......  .+...... ....-+++.+..+....+++  .++...+.+|....+.
T Consensus        68 ~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   68 VLTSDSGR-LVAVATSSKQRAVFDYRENPKG--AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccCCCce-EEEEEeCCCceEEEEEecCCCc--ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34455454 6777777777667776655431  11222111 22233444444444444322  2333444445444322


Q ss_pred             CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                          ....-+|-+.++.|+|+|+++ +++++..|..|++-..... ..+..+. +|+.-|..++.-++.  .|++++.|+
T Consensus       144 ----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~  215 (390)
T KOG3914|consen  144 ----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK  215 (390)
T ss_pred             ----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence                334458999999999999998 6889999999999887763 3444444 699999999999875  589999999


Q ss_pred             eEEEeeCCCCCccc
Q 014433          341 RLMVWDLSRIDEEQ  354 (424)
Q Consensus       341 ~i~iwd~~~~~~~~  354 (424)
                      ++++||+.+++...
T Consensus       216 tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  216 TLRLWDITSGKLLD  229 (390)
T ss_pred             cEEEEecccCCccc
Confidence            99999999987654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.90  E-value=1.6e-06  Score=77.81  Aligned_cols=195  Identities=11%  Similarity=0.067  Sum_probs=126.9

Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE---EEecCCCceeEEE-ecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL---RLRGHSTEGYGLS-WSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~-~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      .+|+.++.  +..|.|++||..+...+.-..  ..+..   .......+..-+. |++....+++..|. |...+.+...
T Consensus       276 sDGkrIvF--q~~GdIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         276 SDGKRIVF--QNAGDIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             CCCcEEEE--ecCCcEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence            45665444  456889999987632211000  00000   0000111111222 44444447777776 6777777654


Q ss_pred             CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEE
Q 014433          211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL  289 (424)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  289 (424)
                      +..        .--++.+.|.-..+..+.. -++.|..|| .+-|+|.++++    +..+...-+.|.++..+|+|++ +
T Consensus       351 ~~~--------iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~-~  416 (668)
T COG4946         351 GYS--------IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKK-V  416 (668)
T ss_pred             Cee--------EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcE-E
Confidence            411        1224677788888877766 456888888 89999999876    3455566788999999999984 7


Q ss_pred             EEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC----eEEEeeCCCC
Q 014433          290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----RLMVWDLSRI  350 (424)
Q Consensus       290 ~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg----~i~iwd~~~~  350 (424)
                      +++.....|-+.|+.+ +.+...-+...+-|+.+.|||+++ ++|-+--+|    .|+++|+..+
T Consensus       417 vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         417 VVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCC
Confidence            7777788999999998 554444445567899999999996 677766555    5899999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=5e-08  Score=85.51  Aligned_cols=158  Identities=12%  Similarity=0.137  Sum_probs=101.5

Q ss_pred             eEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCC
Q 014433          232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKIS  307 (424)
Q Consensus       232 ~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~  307 (424)
                      .+..++.+ .++|++..+....+++.+.... .+.+.. ..-...-+++.|..+....+ .+..-|   .+.+|....  
T Consensus        67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~-v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVL-VADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEE-EEeecCCceeeeeecccc--
Confidence            33444544 4667777777766777765442 122222 12233344455544444322 333334   444554443  


Q ss_pred             CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      .+...+-+|-+-++.++|+||++ +++++..|..|+|-......             ..-.-.-||...|..++.-++. 
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-------------~IesfclGH~eFVS~isl~~~~-  206 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-------------VIESFCLGHKEFVSTISLTDNY-  206 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-------------chhhhccccHhheeeeeeccCc-
Confidence            34455668999999999999995 79999999999997765421             1112235899999999998765 


Q ss_pred             cEEEEEeCCCcEEEEecCCccCC
Q 014433          388 WVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                       +|+|+|.|++|++||+.++..-
T Consensus       207 -~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  207 -LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             -eeeecCCCCcEEEEecccCCcc
Confidence             5889999999999999998643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=1.4e-06  Score=78.29  Aligned_cols=261  Identities=13%  Similarity=0.155  Sum_probs=158.4

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      -.++|.+.|.-.++.-++. -++.|..|| .+-|+|...           .....+...-+.|.++..+++|+ .++.+.
T Consensus       354 iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-----------~e~kr~e~~lg~I~av~vs~dGK-~~vvaN  420 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-----------GEVKRIEKDLGNIEAVKVSPDGK-KVVVAN  420 (668)
T ss_pred             EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-----------ceEEEeeCCccceEEEEEcCCCc-EEEEEc
Confidence            3567888899988888776 688889999 999999987           23455666778899999999998 688888


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ....+.+.|+.++..      ...-+...+-|+.+.|||+++ .+|-+--+    ..|+++|+..++.    .......+
T Consensus       421 dr~el~vididngnv------~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Ki----y~vTT~ta  489 (668)
T COG4946         421 DRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKI----YDVTTPTA  489 (668)
T ss_pred             CceEEEEEEecCCCe------eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeE----EEecCCcc
Confidence            888999999988743      111223457899999999987 45555444    4689999988663    33333344


Q ss_pred             CeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcc----------------eEecCCCCC--EEEEE--EcC-
Q 014433          275 EVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTAL----------------HTFDSHKEE--VFQVG--WNP-  327 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~------~dg~i~iwd~~~~~~~~----------------~~~~~h~~~--v~~~~--~sp-  327 (424)
                      .=.+-+|.|+++++...+.      .|..+.=+......+|.                .......+.  +..+.  ..| 
T Consensus       490 ~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~  569 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPF  569 (668)
T ss_pred             cccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhccccccc
Confidence            4566788898886433322      23333222222111110                011100000  00000  001 


Q ss_pred             ---CCCcEEEEEECCCeEEEeeCCCCCcccCC-CCcCCCCCeeeEEEcC-----CCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433          328 ---KNETILASCCLGRRLMVWDLSRIDEEQTP-EDAEDGPPELLFIHGG-----HTSKISDFSWNPCEDWVISSVAEDNI  398 (424)
Q Consensus       328 ---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~dg~  398 (424)
                         .+.+..+++-.+|.|.++...-..+.... ..+........+.+..     -...+.++..|+++..+++  -.||.
T Consensus       570 pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv--k~d~k  647 (668)
T COG4946         570 PVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV--KLDGK  647 (668)
T ss_pred             ccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE--EeCCe
Confidence               12344556666777777766543322211 1110000111222221     1346899999999997665  68999


Q ss_pred             EEEEecCC
Q 014433          399 LQIWQMAE  406 (424)
Q Consensus       399 i~vw~~~~  406 (424)
                      +++++++.
T Consensus       648 l~~f~vek  655 (668)
T COG4946         648 LRLFDVEK  655 (668)
T ss_pred             EEEEeccc
Confidence            99999976

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.2e-08  Score=87.54  Aligned_cols=155  Identities=13%  Similarity=0.176  Sum_probs=111.7

Q ss_pred             eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433          145 TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       145 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      +.+-.|.+-++.+           .....+. .++.|.++.|...++ ++..|..+|.|..+|++......... ...+ 
T Consensus       231 G~sqqv~L~nvet-----------g~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~-a~rl-  295 (425)
T KOG2695|consen  231 GLSQQVLLTNVET-----------GHQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC-AQRL-  295 (425)
T ss_pred             cccceeEEEEeec-----------ccccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc-eEEE-
Confidence            4456677778776           1222333 667899999998776 89999999999999999875543332 2222 


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE--ecCCCCeEEEEEeCCCcEEEEE
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA--FNPFNEWILATGSTDKTVKLFD  302 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~--~~~~~~~~l~tg~~dg~i~iwd  302 (424)
                      .|.+.|+++.........+.+.+.+|+|++||+|.-+..+.+..+.+|-..-.-+-  .++... .++++++|...+||.
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWS  374 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEe
Confidence            38999999988773334555778999999999998776666888888755433333  344444 677899999999999


Q ss_pred             CCCCCCcceEecCC
Q 014433          303 LRKISTALHTFDSH  316 (424)
Q Consensus       303 ~~~~~~~~~~~~~h  316 (424)
                      ++. +..+.++...
T Consensus       375 l~~-ghLl~tipf~  387 (425)
T KOG2695|consen  375 LDS-GHLLCTIPFP  387 (425)
T ss_pred             ccc-CceeeccCCC
Confidence            998 6777666543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.2e-07  Score=80.56  Aligned_cols=248  Identities=10%  Similarity=0.102  Sum_probs=144.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|...|..++|+|.+..++..++.+..|.|.|+.+          ......+..+ ..+++++|.-+..++|+.|...|.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            46678999999998877899999999999999988          3344455556 789999999999989999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeec--CCccEeeEEE------ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAW------HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~------~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      |.+||++.....     +..+.+  ...+|..++.      .+.+. +++....  .+..|.+.......+...-....+
T Consensus       260 VlvyD~R~~~~~-----~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG  331 (463)
T KOG1645|consen  260 VLVYDMRQPEGP-----LMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPG  331 (463)
T ss_pred             EEEEEccCCCch-----HhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence            999999876432     111111  1223433332      22333 3323222  355666654332222211123356


Q ss_pred             CeeEEEecCCCCeEEEEEeCCC------cEEE-EECCCCCCcceE-ecCC-CCC-----EEEEEE-cCCCCcEEEEEECC
Q 014433          275 EVNCLAFNPFNEWILATGSTDK------TVKL-FDLRKISTALHT-FDSH-KEE-----VFQVGW-NPKNETILASCCLG  339 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg------~i~i-wd~~~~~~~~~~-~~~h-~~~-----v~~~~~-sp~~~~~l~s~~~d  339 (424)
                      ...++++++...++|++.-.+.      .|-. -|.+. +.++.. ...+ .+.     -+...+ .++...++..+...
T Consensus       332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t  410 (463)
T KOG1645|consen  332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST  410 (463)
T ss_pred             ceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence            7777888887777777765531      1111 11111 111111 1111 000     011222 34444455566667


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEeCCCcEEEEecCC
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +.+.+||..+....+              .+. -..+|.+++... ++..+|+.- .|..++|++.+.
T Consensus       411 n~lil~D~~s~evvQ--------------~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  411 NELILQDPHSFEVVQ--------------TLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             ceeEEeccchhheee--------------ecc-cCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            889999999864333              222 124677666543 333345443 467799987653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=4.1e-06  Score=85.83  Aligned_cols=251  Identities=15%  Similarity=0.264  Sum_probs=151.4

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ..+.|.++.|.++.. -++.+..+|.|.+........       .........-...|.+++|||++. +|+....++++
T Consensus        74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~-------~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l  144 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPD-------EDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNL  144 (928)
T ss_pred             CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCC-------CceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEE
Confidence            346788999999776 566678899999993332100       122233334567899999999988 78888888888


Q ss_pred             EEEeCCC-----------------------CCCCCcc-----c--------ce------eeeecCCccEeeEEEecCCCc
Q 014433          204 CLWDINA-----------------------APKNKSL-----E--------AM------QIFKVHEGVVEDVAWHLRHEY  241 (424)
Q Consensus       204 ~iwd~~~-----------------------~~~~~~~-----~--------~~------~~~~~~~~~v~~~~~~~~~~~  241 (424)
                      .+-.-.-                       |++..++     +        +.      ..+. +...-..|+|-.||.+
T Consensus       145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence            7754211                       0000000     0        00      0111 3345667899999975


Q ss_pred             EEEEEeC---C---CeEEEEEcCCCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcce
Q 014433          242 LFGSVGD---D---QYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALH  311 (424)
Q Consensus       242 ~~~s~~~---d---g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~  311 (424)
                      + |+.+.   .   ..++||+-. +.    +... ..-.+--.+++|.|.|. +||+.-.   ...|.+|.-.....--.
T Consensus       224 F-AVss~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF  296 (928)
T PF04762_consen  224 F-AVSSVEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEF  296 (928)
T ss_pred             E-EEEEEEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence            4 45442   2   578999875 22    2221 12233345789999997 6777654   34677776443221112


Q ss_pred             Ee--cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCc
Q 014433          312 TF--DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDW  388 (424)
Q Consensus       312 ~~--~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  388 (424)
                      .+  ......|..++|++++. +||....|. |.+|-..+..-            -+...+. .....+..+.|+|..+.
T Consensus       297 ~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHW------------YLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  297 TLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHW------------YLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             ecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEE------------EEEEEEEccCCCCCCceEECCCCCC
Confidence            22  23456899999999995 788877665 99999877531            1111111 12233555899998876


Q ss_pred             EEEEEeCCCcEEEEecC
Q 014433          389 VISSVAEDNILQIWQMA  405 (424)
Q Consensus       389 ~l~s~~~dg~i~vw~~~  405 (424)
                      .|.....+|.+..+++.
T Consensus       363 ~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  363 RLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEEEecCCcEEEEEEE
Confidence            67776766777655443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.81  E-value=1.1e-06  Score=79.61  Aligned_cols=198  Identities=17%  Similarity=0.214  Sum_probs=127.8

Q ss_pred             CceeEEEecCCCC-cEEEE-----EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-
Q 014433          126 GEVNRARYMPQNP-FLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-  198 (424)
Q Consensus       126 ~~v~~~~~~p~~~-~~lat-----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-  198 (424)
                      ..|....|+|.+. .-||.     .+..+.++||.+..          ...+.+-.-....-..+.|++.|..+|+-.- 
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~----------~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t  243 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK----------NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT  243 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC----------CCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence            5677778888522 23443     34678899999875          1222222212233457889998885443221 


Q ss_pred             ---------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcE-EEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          199 ---------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       199 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                               ....+.|+++.....       .......++|.+.+|.|.++.+ +++|..+..+.++|++..-      .
T Consensus       244 ~~ksnKsyfgesnLyl~~~~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------~  310 (561)
T COG5354         244 HTKSNKSYFGESNLYLLRITERSI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------R  310 (561)
T ss_pred             eeecccceeccceEEEEeeccccc-------ceeccccccceeeeecccCCceeEEecccccceeecccccce------E
Confidence                     124577888864321       1122457899999999987654 3344688899999998742      2


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE------CCC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC------LGR  340 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~------~dg  340 (424)
                      +......=+.+.|+|.++++|+.|..  -|.|-+||.......+..+.+.  ..+-+.|+|+++. +.+..      .|.
T Consensus       311 ~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF-~~~~~ts~k~~~Dn  387 (561)
T COG5354         311 FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQF-YDTDTTSEKLRVDN  387 (561)
T ss_pred             EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceE-EEecCCCcccccCc
Confidence            23445666788999999976655443  3789999988744555566653  3456889999974 44432      277


Q ss_pred             eEEEeeCCC
Q 014433          341 RLMVWDLSR  349 (424)
Q Consensus       341 ~i~iwd~~~  349 (424)
                      .|+|||+..
T Consensus       388 ~i~l~~v~g  396 (561)
T COG5354         388 SIKLWDVYG  396 (561)
T ss_pred             ceEEEEecC
Confidence            899999975

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.6e-07  Score=83.50  Aligned_cols=271  Identities=12%  Similarity=0.061  Sum_probs=176.0

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      +...|++.|+.+....  ..++.+++.||.++.|.-...       .-..-+..+..|...+.+++.+-++- ++.|.+.
T Consensus         4 ksymhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~i-------sGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d   73 (558)
T KOG0882|consen    4 KSYMHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRI-------SGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVED   73 (558)
T ss_pred             hhhcccceeeeEeeeh--hheEEeeecchhhhhcCCCCc-------cceeehhhhHHHHHHHHhhhccccce-eEeeccC
Confidence            3467888888877654  348999999999999986541       11222344567888899999988776 6888777


Q ss_pred             -CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC--cEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       200 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                       |..++++|+..-.....++    +..-.+.+..+ .++...  .+-++.-.+|.+.++|-+...+ .....-.-|..+|
T Consensus        74 ~Dhs~KvfDvEn~DminmiK----L~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV  147 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIK----LVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPV  147 (558)
T ss_pred             cccceeEEEeeccchhhhcc----cccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCce
Confidence             9999999998654322111    11122222222 122211  2333445789999999887664 2334446699999


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCC-CCCc-------------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRK-ISTA-------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~-------------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      .++.+++.+. .+++....|.|.-|.... ...|             +..+...+....++.|+|++. .+.+-+.|..|
T Consensus       148 ~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkV  225 (558)
T KOG0882|consen  148 KKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKV  225 (558)
T ss_pred             EEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEE
Confidence            9999999988 588888889999998772 1111             111222346778999999997 58888899999


Q ss_pred             EEeeCCCCCcccCCCCcC-------CCCCeeeE-----------EEcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          343 MVWDLSRIDEEQTPEDAE-------DGPPELLF-----------IHGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~-------~~~~~~~~-----------~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +++++.++...+..+...       ..+..+..           .+..|.. .-+.+.|...+.++| -++-=| |+|.+
T Consensus       226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll-y~t~~g-ikvin  303 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL-YGTILG-IKVIN  303 (558)
T ss_pred             EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE-eeccee-EEEEE
Confidence            999999987655433211       00111110           0111222 345678998999544 444444 89999


Q ss_pred             cCCccCC
Q 014433          404 MAENIYH  410 (424)
Q Consensus       404 ~~~~~~~  410 (424)
                      +.++.+.
T Consensus       304 ~~tn~v~  310 (558)
T KOG0882|consen  304 LDTNTVV  310 (558)
T ss_pred             eecCeEE
Confidence            9888654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=2.7e-06  Score=81.89  Aligned_cols=202  Identities=13%  Similarity=0.132  Sum_probs=132.3

Q ss_pred             EecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC-----cEEEE
Q 014433          132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QICLW  206 (424)
Q Consensus       132 ~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iw  206 (424)
                      +|++.+. .+|.|+.+|.|.+.+-.-           +....++.+...+...-|.-++..+|++.+.|+     .+++|
T Consensus        30 c~~s~~~-~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   30 CCSSSTG-SVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             EEcCCCc-eEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence            3556554 899999999999888553           334556667666444445555655788877665     48999


Q ss_pred             eCCCCCCCCcccce---eeee----cCCccEeeEEEecCCCcEEEEEeCCCeEEEEE--cCCCCCCCCeeeeeccCCCee
Q 014433          207 DINAAPKNKSLEAM---QIFK----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD--LRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       207 d~~~~~~~~~~~~~---~~~~----~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +++......+-.++   +.+.    ....++.+++.+.+- ..+|+|-.+|.|..+.  +...... ...-......+|+
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pIT  175 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPIT  175 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCce
Confidence            99876433322222   1111    135678889998875 4677999999999884  2222211 1222223467999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      .+++..++...+.++. -..|.+|.+.........+..|+.++.|..+++....++ +++ +..+.+|+....
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence            9999988886333333 357999999863323455788889999999998775444 333 345999998753

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.76  E-value=3.4e-07  Score=88.32  Aligned_cols=182  Identities=16%  Similarity=0.237  Sum_probs=130.1

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      ..++.|+-...+..+|+.+          .+......-....|+-+..+  +. ++.+|...|+|.+-|.++.      +
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~----------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~  208 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNT----------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------E  208 (1118)
T ss_pred             cceeecchhhheeeeeccc----------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------c
Confidence            3456666666777788876          22222222222235555543  44 7999999999999999765      5


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEe---------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEE
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVG---------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL  289 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  289 (424)
                      .++.+..|++.|.++..+  |+ +++++|         .|..|+|||+|..+...|+...   .+ ..-+.|+|.-...+
T Consensus       209 ~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf~Psl~t~~  281 (1118)
T KOG1275|consen  209 TIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRFHPSLTTRL  281 (1118)
T ss_pred             eeeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhhcccccceE
Confidence            678888999999988765  44 555665         3667899999998776666542   22 25677888777779


Q ss_pred             EEEeCCCcEEEEECCCCCCc---ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          290 ATGSTDKTVKLFDLRKISTA---LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       290 ~tg~~dg~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      ++.+..|...+-|......+   +..+......+..+.++++++ .+|.|..+|.|.+|--
T Consensus       282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence            99999999999994433333   444555566799999999995 8999999999999973

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.76  E-value=5.2e-07  Score=87.06  Aligned_cols=190  Identities=17%  Similarity=0.228  Sum_probs=133.4

Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      ++..++.|+....+..+|+++.+..      +......+.|.-++.+  ++ ++.+|...|+|.+-|.++-+   .++++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~------r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~---~iht~  213 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET------RTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFE---TIHTF  213 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee------eeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcCc---eeeee
Confidence            3345788888888889999876432      1122223345555543  44 45589999999999999855   58999


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeC---------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGST---------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      .+|.+.|..+...  |. +|++++.         |..|+|||+|+. +.+.-+..+.++ .-+.|+|.-...++.++..|
T Consensus       214 ~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  214 DAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             eccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEeccc
Confidence            9999999877765  55 5777664         557899999984 444444444333 56888998777899999999


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ...+-|......          |+.-++....-.+.+..+++++++. .++.|..+|.|.+|.-..+
T Consensus       289 q~q~vd~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~~~  344 (1118)
T KOG1275|consen  289 QFQFVDTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADRPQ  344 (1118)
T ss_pred             ceeeccccccCC----------CccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCCCC
Confidence            999998544322          1122333333345599999999999 7999999999999985443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.73  E-value=3e-05  Score=67.66  Aligned_cols=233  Identities=16%  Similarity=0.106  Sum_probs=143.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE-----eC
Q 014433          126 GEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-----SD  199 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-----~~  199 (424)
                      .....++.+|.....+|.+-.-| ...+||..+......  ....+-..+.+|      -.|+++|. +|++.     ..
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~--~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g   75 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR--LWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETG   75 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE--EcCCCCCEEecC------EEEcCCCC-EEEEeccccCCC
Confidence            34556888887777888887776 466788876322111  011223345556      57999998 56664     33


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------------CCCeEEEEEcCCCCC
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLRTPSV  262 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~i~d~~~~~~  262 (424)
                      .|.|-|||...     .+..+..+..|.-.-..+.+.|+++.|+++-+                 .+-.+.+.|.+++..
T Consensus        76 ~G~IgVyd~~~-----~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l  150 (305)
T PF07433_consen   76 RGVIGVYDAAR-----GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL  150 (305)
T ss_pred             cEEEEEEECcC-----CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence            68899999972     22445666677777788999999977764422                 233455566666654


Q ss_pred             CCCeeee--eccCCCeeEEEecCCCCeEEEEEeCCC-------cEEEEECCCCCCcceEec-------CCCCCEEEEEEc
Q 014433          263 SKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDK-------TVKLFDLRKISTALHTFD-------SHKEEVFQVGWN  326 (424)
Q Consensus       263 ~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg-------~i~iwd~~~~~~~~~~~~-------~h~~~v~~~~~s  326 (424)
                      ... ..+  .-|...|..++++++|. +++..-..|       .|.+++..   ..+..+.       .-.+.+-+|+++
T Consensus       151 l~q-~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~  225 (305)
T PF07433_consen  151 LEQ-VELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAAD  225 (305)
T ss_pred             eee-eecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEe
Confidence            211 123  33677899999999886 333332222       23344332   2222222       234679999999


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE  395 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  395 (424)
                      +++..+.+|+=..+.+.+||..++.              ++....  -..+..++-.+++  +++|.+.
T Consensus       226 ~~g~~ia~tsPrGg~~~~~d~~tg~--------------~~~~~~--l~D~cGva~~~~~--f~~ssG~  276 (305)
T PF07433_consen  226 RDGRLIAVTSPRGGRVAVWDAATGR--------------LLGSVP--LPDACGVAPTDDG--FLVSSGQ  276 (305)
T ss_pred             CCCCEEEEECCCCCEEEEEECCCCC--------------Eeeccc--cCceeeeeecCCc--eEEeCCC
Confidence            9997666777789999999998863              222221  2235667766665  5666553

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=2.2e-07  Score=82.63  Aligned_cols=225  Identities=16%  Similarity=0.146  Sum_probs=149.5

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIW  255 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~  255 (424)
                      |...|+.+.-..  ..++.+++.||.++.|.-..-   .-...+..+..|-..|.+++.+-++ .++++++. |..++++
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~i---sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRI---SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCc---cceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEE
Confidence            777777766443  348999999999999976431   1223345566788899999988877 47778777 9999999


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcE
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~tg-~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~  332 (424)
                      |+.+-....-+ .+.-..+.+.++. ++. -..++|++ ..+|.+.++|-+... +....-..|..+|..+.++|-+. .
T Consensus        82 DvEn~Dminmi-KL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s  158 (558)
T KOG0882|consen   82 DVENFDMINMI-KLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S  158 (558)
T ss_pred             Eeeccchhhhc-ccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence            99875431111 1111222222222 221 11234443 457899999988754 44555567999999999999997 5


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcCCCCC---eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP---ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +++....|.|.-|....  ..+.+....+...   .-++.+.-......++.|+|++. .+.+-+.|..|+++.+.++.+
T Consensus       159 ~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eeeccccceeEeecCCC--cccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchh
Confidence            77888889999998873  1111111111110   11222223345678999999999 688889999999999999987


Q ss_pred             CCCC
Q 014433          410 HDED  413 (424)
Q Consensus       410 ~~~~  413 (424)
                      ..+-
T Consensus       236 vqei  239 (558)
T KOG0882|consen  236 VQEI  239 (558)
T ss_pred             hhhh
Confidence            6653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=8e-07  Score=84.76  Aligned_cols=187  Identities=15%  Similarity=0.206  Sum_probs=127.3

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....+.|++++.   .++|-|+-+|.|++++...           .+ .+...|...      .-.|. ++++|+.||.|
T Consensus        38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-----------~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv   95 (846)
T KOG2066|consen   38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-----------NP-KTNFDHSSS------ILEGE-YVASCSDDGKV   95 (846)
T ss_pred             hhhHHHHHHhhc---ceeeeccccceEEEEecCC-----------cc-ccccccccc------ccCCc-eEEEecCCCcE
Confidence            456788888864   4899999999999999876           22 233345443      44466 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecC----CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      .|-.+-+.....+      + ....++.+++++|+    ....|++|+.-| +.++.-+=-.....+ .+....++|.++
T Consensus        96 ~I~sl~~~~~~~~------~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i  166 (846)
T KOG2066|consen   96 VIGSLFTDDEITQ------Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSI  166 (846)
T ss_pred             EEeeccCCcccee------E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEE
Confidence            9998877643211      1 24578999999998    223466898888 777754432222222 345667899999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC------CEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE------EVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .|.  |. ++|=++.+| |++||+.. ++.+..+.....      --..+.|.+...  |+.|= ..+|+|..++.
T Consensus       167 ~W~--g~-lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  167 KWR--GN-LIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIKK  234 (846)
T ss_pred             Eec--Cc-EEEEecCCC-cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe--EEEec-CCeEEEEEEec
Confidence            997  44 788887776 89999987 444444443222      235678887763  55554 44699998883

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.71  E-value=5.5e-09  Score=96.62  Aligned_cols=212  Identities=14%  Similarity=0.204  Sum_probs=136.7

Q ss_pred             CceeEEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe----CCCeEE
Q 014433          179 TEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG----DDQYLL  253 (424)
Q Consensus       179 ~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~  253 (424)
                      .-+.|+++.-+.. .++++|..+|.|.+-.++..-..    ......+|..++++++|++-+...+|+|-    .|..+.
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            3456676654433 47889999999999988754221    12334567889999999998777776663    467899


Q ss_pred             EEEcCCCCC-CCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          254 IWDLRTPSV-SKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       254 i~d~~~~~~-~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      |||+.+.-. .+.-..+. +......+++|..+.+ ++.+|...+.++++|+|...  .......+..+..+...|-...
T Consensus       133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCC
Confidence            999987621 11111112 2345667899997665 78899999999999999522  2222223456777888885545


Q ss_pred             EEEEEECCCeEEEee-CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC-CCcEEEEecCCc
Q 014433          332 ILASCCLGRRLMVWD-LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE-DNILQIWQMAEN  407 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~  407 (424)
                      ++++.. ||.|.+|| .++......         ..+..-......+..++|+|..+.++++... .++|+++++...
T Consensus       210 Y~cs~~-dg~iAiwD~~rnienpl~---------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRNIENPLQ---------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             ceeccc-cCceeeccchhhhccHHH---------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            665554 99999999 443321110         0000000111248889999988777777664 568889888653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.68  E-value=9.4e-06  Score=73.70  Aligned_cols=206  Identities=14%  Similarity=0.206  Sum_probs=126.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCC---------------eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--ee-
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSA---------------EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GY-  182 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-  182 (424)
                      ++.|+ .|.-+.|+|.+. +|.+-+..+               .+.+||+.+          ...+..+..-..+  .+ 
T Consensus        68 ~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----------g~iv~sf~~~~q~~~~Wp  135 (561)
T COG5354          68 RFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----------GMIVFSFNGISQPYLGWP  135 (561)
T ss_pred             eeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCceeEEeccC----------ceeEeeccccCCcccccc
Confidence            44444 567788888775 777765433               488999887          3334444443333  44 


Q ss_pred             EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCc-EEEE-----EeCCCeEEEEE
Q 014433          183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY-LFGS-----VGDDQYLLIWD  256 (424)
Q Consensus       183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~s-----~~~dg~i~i~d  256 (424)
                      -+.|+-++. ++|-- ....+.|+++ +....  ..+...+.  ...|....|+|.+.+ .||.     .+..+++++|.
T Consensus       136 ~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~--~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s  208 (561)
T COG5354         136 VLKFSIDDK-YVARV-VGSSLYIHEI-TDNIE--EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS  208 (561)
T ss_pred             eeeeeecch-hhhhh-ccCeEEEEec-CCccc--cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence            577887665 44433 3457999997 32211  01111121  357888999997433 2332     35678899999


Q ss_pred             cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC----------CCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433          257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST----------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s  326 (424)
                      +..+..   +....-....-..+.|++.|.++++-.-.          ...++|++++.  ..+.....-.++|...+|.
T Consensus       209 Ip~~s~---l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~  283 (561)
T COG5354         209 IPKNSV---LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWE  283 (561)
T ss_pred             ccCCCe---eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeec
Confidence            985543   33222233444678899999876554321          24688888885  2233332557899999999


Q ss_pred             CCCCcEEEEE-ECCCeEEEeeCCCC
Q 014433          327 PKNETILASC-CLGRRLMVWDLSRI  350 (424)
Q Consensus       327 p~~~~~l~s~-~~dg~i~iwd~~~~  350 (424)
                      |.++.+.+.. -.+..+.++|++..
T Consensus       284 p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         284 PLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ccCCceeEEecccccceeecccccc
Confidence            9987643333 46778999998763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=3.4e-07  Score=85.98  Aligned_cols=165  Identities=14%  Similarity=0.162  Sum_probs=119.7

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC---------CcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .....+++|+.... ++++|+.||.+++..+.+....         ..+..-+.+.+|...|.-+.|+.....+ .+...
T Consensus        14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL-TtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL-TTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc-cccCC
Confidence            34578999998655 8999999999999988765432         2334455688999999999999887654 57788


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      +|.|.||-+-.+.-.... .-...++-|.+++|+.+|.. ++..-.||.|.+=.+..  ..+.--.........+.|+++
T Consensus        92 ~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG--NRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG--NRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc--ceecchhcchheccceeeccc
Confidence            999999999876531111 11234677999999999985 88888899888877764  222111112234457999999


Q ss_pred             CCcEEEEEECCCeEEEeeCCC
Q 014433          329 NETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .+. +..+-..|.+.++|...
T Consensus       168 ~~~-~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  168 LEQ-ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             HHH-HHhhhcCCcEEEecccc
Confidence            874 55677789999999754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.64  E-value=2e-05  Score=71.14  Aligned_cols=200  Identities=11%  Similarity=0.108  Sum_probs=114.6

Q ss_pred             EEEecCCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433          130 RARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  208 (424)
                      .++++|+|+.++++--. +..|.+.|+..          .+.+..+.- .+...-...+. ..  +.+-+.||......+
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~----------~kvv~ei~v-p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~  174 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEG----------KAFVRMMDV-PDCYHIFPTAN-DT--FFMHCRDGSLAKVGY  174 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCC----------CcEEEEEeC-CCCcEEEEecC-Cc--cEEEeecCceEEEEe
Confidence            78999999865554424 78999999987          333333332 11111122221 11  223344555555444


Q ss_pred             CCCCCCCcccceeeeec-----CCccEeeEEEec-CCCcEEEEEeCCCeEEEEEcCCCCC--CCCeeeeec-------cC
Q 014433          209 NAAPKNKSLEAMQIFKV-----HEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSV--SKPVQSVVA-------HQ  273 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~--~~~~~~~~~-------~~  273 (424)
                      ....... ......+..     ...+    .|.+ ++..++++  ..|.|.+.|+.....  ..++..+..       ..
T Consensus       175 d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       175 GTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             cCCCceE-EeeeeeecCCccccccCC----ceEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCC
Confidence            4332211 111111111     0112    3455 77666644  339999999755332  111222111       23


Q ss_pred             CCeeEEEecCCCCeEEEEEe---------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC-cEEEEEECCCeEE
Q 014433          274 SEVNCLAFNPFNEWILATGS---------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE-TILASCCLGRRLM  343 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~~l~s~~~dg~i~  343 (424)
                      ....-++++|+++++++...         ..+.|.++|..+ .+.+..+.. ...+..++++|+++ .++++...++.|.
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLY  325 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence            34445999999997666442         124799999998 677777665 56899999999998 5454555788899


Q ss_pred             EeeCCCCCc
Q 014433          344 VWDLSRIDE  352 (424)
Q Consensus       344 iwd~~~~~~  352 (424)
                      ++|..+.+.
T Consensus       326 ViD~~t~k~  334 (352)
T TIGR02658       326 IFDAETGKE  334 (352)
T ss_pred             EEECcCCeE
Confidence            999988643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1.2e-07  Score=56.33  Aligned_cols=38  Identities=29%  Similarity=0.661  Sum_probs=35.0

Q ss_pred             CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      +++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46788999999999999999985 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=8.1e-06  Score=78.72  Aligned_cols=198  Identities=16%  Similarity=0.247  Sum_probs=124.9

Q ss_pred             EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-----eEEEEEcCC
Q 014433          185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-----YLLIWDLRT  259 (424)
Q Consensus       185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~i~d~~~  259 (424)
                      +|++.+. .++.|+.+|.|.+.+-.       +..+..++.+...+...-|.-++..++++.+.|+     .++|||+..
T Consensus        30 c~~s~~~-~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTG-SVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCc-eEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            3556555 79999999999888743       2234556666666333334444444555665554     599999976


Q ss_pred             CCCCC-C--e--eeee-----ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC---CCCCCcceEecCCCCCEEEEEEc
Q 014433          260 PSVSK-P--V--QSVV-----AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL---RKISTALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       260 ~~~~~-~--~--~~~~-----~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~h~~~v~~~~~s  326 (424)
                      ..... |  +  ..+.     ....++.+++.+.+-. .+|+|..+|.|..+-=   |..+....-....+.+|+.+++.
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            42211 1  2  1111     1356788999998866 7999999999999842   22122222222346799999999


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .++..++.++.. ..|.+|.+....             ..+..+..|...+++..+++.... +++++ +..+.+|+...
T Consensus       181 ~d~~s~lFv~Tt-~~V~~y~l~gr~-------------p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  181 SDGKSVLFVATT-EQVMLYSLSGRT-------------PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDG  244 (933)
T ss_pred             cCCceeEEEEec-ceeEEEEecCCC-------------cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCC
Confidence            988764444443 359999987421             234456677777888888876653 44444 35688988875


Q ss_pred             c
Q 014433          407 N  407 (424)
Q Consensus       407 ~  407 (424)
                      .
T Consensus       245 ~  245 (933)
T KOG2114|consen  245 R  245 (933)
T ss_pred             c
Confidence            4

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=1.7e-07  Score=55.66  Aligned_cols=38  Identities=24%  Similarity=0.637  Sum_probs=35.2

Q ss_pred             eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +++..+.+|...|++++|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46788899999999999999988 799999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=1.7e-05  Score=73.86  Aligned_cols=133  Identities=18%  Similarity=0.322  Sum_probs=94.6

Q ss_pred             CCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEe----CCCe----EEEEeCCCCCCCCCCCCCCCCc-EEEecCCCce
Q 014433          111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT----VSAE----VYVFDYSKHPSKPPLDGACSPD-LRLRGHSTEG  181 (424)
Q Consensus       111 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~----~dg~----v~iw~~~~~~~~~~~~~~~~~~-~~~~~h~~~v  181 (424)
                      ...++++++..+.-.....++.|+-..++.+.|-.    .+|.    -.+|++..        ...+.. .+-......|
T Consensus       191 ~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--------~klqrvsvtsipL~s~v  262 (545)
T PF11768_consen  191 CSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR--------NKLQRVSVTSIPLPSQV  262 (545)
T ss_pred             ecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec--------CceeEEEEEEEecCCcc
Confidence            34558888888888888899999986655555532    2343    34566654        111111 1223477889


Q ss_pred             eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      .+++++|+.. .|+.|+.||+|.+||...+.        .......-..+.++|||+|. +|++|+..|.+.+||+.-..
T Consensus       263 ~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~--------t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  263 ICCARSPSED-KLVLGCEDGSIILYDTTRGV--------TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             eEEecCcccc-eEEEEecCCeEEEEEcCCCe--------eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCc
Confidence            9999999887 79999999999999997652        11222445678999999986 66799999999999987543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.52  E-value=7.9e-05  Score=65.16  Aligned_cols=200  Identities=12%  Similarity=0.120  Sum_probs=123.9

Q ss_pred             EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe-cCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      ++.|.+....++++-...+.|..|+..++..       ..+.. . ....+++. +++ .++ .+.. +.+.++|+.+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-------~~~~~-~-~~~G~~~~~~~g-~l~-v~~~-~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-------EVIDL-P-GPNGMAFDRPDG-RLY-VADS-GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-------EEEES-S-SEEEEEEECTTS-EEE-EEET-TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-------EEEec-C-CCceEEEEccCC-EEE-EEEc-CceEEEecCCCc
Confidence            6788885554667766789999999976521       11221 2 27777887 554 455 4444 445666988865


Q ss_pred             CCCCeeeee--c-cCCCeeEEEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433          262 VSKPVQSVV--A-HQSEVNCLAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       262 ~~~~~~~~~--~-~~~~v~~v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                      . ..+....  . .....+.+++.|+|. +.++....        |.|..++..  ++ +..+...-...+.++|+|+++
T Consensus        72 ~-~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   72 V-TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             E-EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSS
T ss_pred             E-EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcch
Confidence            3 2233322  1 335678999999998 56665543        456666665  22 222222345678999999998


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .++++-+..+.|..+++........       ..+.+..+....+..-.+++..+|. +.++.-..+.|.+++....
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~  215 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELS-------NRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK  215 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEE-------EEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC
T ss_pred             heeecccccceeEEEecccccccee-------eeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc
Confidence            7777788889999999864321000       0122333333333467899999998 6777777899999998844

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.52  E-value=0.00037  Score=65.17  Aligned_cols=175  Identities=18%  Similarity=0.265  Sum_probs=106.2

Q ss_pred             cEeeEEEecCCCcEEEEE----eCCCe----EEEEEcCCCCCCCCee-eeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          229 VVEDVAWHLRHEYLFGSV----GDDQY----LLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~----~~dg~----i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                      ...++.|+...++.+.+.    +.+|.    -.+|++...+. +.+. +-...++.|.|++++|+.. .|+.|+.||+|.
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii  284 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSII  284 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence            345666766555544443    23343    34677665442 2222 2234678999999999888 589999999999


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE---EcCCCCC
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI---HGGHTSK  376 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~  376 (424)
                      +||....   +..+....-.++.++|+|+|. ++++|+.-|.+.+||+.-......... ++..+.....   +-.+...
T Consensus       285 LyD~~~~---~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls-Ed~~P~~~L~Ls~yf~~~~~  359 (545)
T PF11768_consen  285 LYDTTRG---VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS-EDATPKSTLQLSKYFRVSSS  359 (545)
T ss_pred             EEEcCCC---eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc-ccCCCccEEeeehhccCcch
Confidence            9998762   223333456789999999995 899999999999999976543222111 1222222222   2234556


Q ss_pred             cceEEeCCCCC------------cEEEEEeCCCcEEEEecCCccCC
Q 014433          377 ISDFSWNPCED------------WVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       377 v~~~~~~~~~~------------~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      +..+.|.+...            .+++-.=+.|=+-+-.+..|...
T Consensus       360 L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~  405 (545)
T PF11768_consen  360 LVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFT  405 (545)
T ss_pred             hheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeecccc
Confidence            77888884321            12333334455555555555443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=1.4e-07  Score=90.62  Aligned_cols=197  Identities=18%  Similarity=0.237  Sum_probs=131.2

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC-
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-  201 (424)
                      .|...-+|++|+-.. +.|++|+-.|.|++|++.+          ........+|..+|+-+.=+.+|..+|.+++... 
T Consensus      1099 d~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s----------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS----------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccccceeeEEeecCC-ceEEeeeccceEEEEEccC----------ccccccccccccccccccccCCcceeeeeccccCc
Confidence            377889999999865 4899999999999999988          3444567889999999999988885555554444 


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeeccCCCeeEEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~v~  280 (424)
                      -..+|++...     ..+.+.+    ..-.++.|+......+ .|+.-....+||+.+........ ...+..-.-++..
T Consensus      1168 lsaLW~~~s~-----~~~~Hsf----~ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1168 LSALWDASST-----GGPRHSF----DEDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred             hHHHhccccc-----cCccccc----cccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence            5689998642     1222222    2446778877644333 45555678899999876422111 1111222337888


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      |+|... +++   .||  .+||+|. .+.++.|..-+.. ..-.|+|+|..++ ..     --|||+++.+...
T Consensus      1238 FsP~D~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~-~~G~FHP~g~eVI-IN-----SEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRI-PEAIHRFDQFTDY-GGGGFHPSGNEVI-IN-----SEIWDMRTFKLLH 1297 (1516)
T ss_pred             cCCCcc-eEe---eCc--eeeeecc-HHHHhhhhhheec-ccccccCCCceEE-ee-----chhhhhHHHHHHh
Confidence            999887 342   455  4899998 4777777654422 2346999996544 32     3589999875443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.44  E-value=0.00015  Score=72.86  Aligned_cols=206  Identities=15%  Similarity=0.242  Sum_probs=123.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      +.|.++.|.-+.. -++.+...|.|.+-|..+           ........-...|.+++|+|+.. .++..+..+++.+
T Consensus        69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et-----------~~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN-SICVITALGDIILVDPET-----------LELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEecccc-eEEEEecCCcEEEEcccc-----------cceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEE
Confidence            5678888888665 566678889999988766           22223333556799999999988 6887777777765


Q ss_pred             EeCC----CCCCC--------C--cc---cceeeeec---------------------CCccEeeEEEecCCCcEEEEE-
Q 014433          206 WDIN----AAPKN--------K--SL---EAMQIFKV---------------------HEGVVEDVAWHLRHEYLFGSV-  246 (424)
Q Consensus       206 wd~~----~~~~~--------~--~~---~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~~s~-  246 (424)
                      -.-.    ..+..        .  ..   +....+.+                     ..+.=+.|.|--+|. +||+. 
T Consensus       136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~  214 (1265)
T KOG1920|consen  136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSF  214 (1265)
T ss_pred             EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEE
Confidence            4321    00000        0  00   00001111                     111223588988886 44442 


Q ss_pred             ---eCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCC--CcceEecCCC
Q 014433          247 ---GDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKIS--TALHTFDSHK  317 (424)
Q Consensus       247 ---~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~--~~~~~~~~h~  317 (424)
                         ..+ ..|+|||-. +.. ....  ......-.+++|-|.|. ++|+-.   .|+.|.+|.-....  .-...+....
T Consensus       215 ~~~~~~~RkirV~drE-g~L-ns~s--e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GAL-NSTS--EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EeccCCceeEEEeccc-chh-hccc--CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence               223 789999987 221 1111  11233446899999887 566643   35679999754321  1122233334


Q ss_pred             CCEEEEEEcCCCCcEEEE---EECCCeEEEeeCCCCC
Q 014433          318 EEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRID  351 (424)
Q Consensus       318 ~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~  351 (424)
                      ..|..++|+.++. +||+   ......|++|-+.+..
T Consensus       290 ~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  290 KEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence            4599999999986 7776   4445569999987653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.44  E-value=8.4e-05  Score=64.94  Aligned_cols=214  Identities=11%  Similarity=0.120  Sum_probs=132.0

Q ss_pred             eeEEEecCCCCceEEEEeCCCc-EEEEeCCCCCCCCcccc--eeeeecCCccEeeEEEecCCCcEEEEE----eCCCeEE
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLEA--MQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLL  253 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~----~~dg~i~  253 (424)
                      ..+++.+|.....++.+-.-|+ ..+||..++.....+..  -+.|.+|      -.|+++++.|+++-    ...|.|-
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence            3467888866656677766665 67889988754322211  1223333      57999999887653    3468899


Q ss_pred             EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEE-Ee----------------CCCcEEEEECCCCCCcceE--e-
Q 014433          254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT-GS----------------TDKTVKLFDLRKISTALHT--F-  313 (424)
Q Consensus       254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~t-g~----------------~dg~i~iwd~~~~~~~~~~--~-  313 (424)
                      |||.+..  ...+..+..|.-...-+.+.|+++.+++. |+                .+.++.+.|.++ +..+..  + 
T Consensus        81 Vyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp  157 (305)
T PF07433_consen   81 VYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELP  157 (305)
T ss_pred             EEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecC
Confidence            9999832  33566777777777888999999754433 21                123455556665 555555  3 


Q ss_pred             -cCCCCCEEEEEEcCCCCcEEEEEECCCe-------EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          314 -DSHKEEVFQVGWNPKNETILASCCLGRR-------LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       314 -~~h~~~v~~~~~sp~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       ..|...|..+++.++|. +++..-..|.       |.+++....  .+..    ..+....   ..-.+.+-+|+++++
T Consensus       158 ~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~----~~p~~~~---~~l~~Y~gSIa~~~~  227 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA--LRLL----PAPEEQW---RRLNGYIGSIAADRD  227 (305)
T ss_pred             ccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc--ceec----cCChHHH---HhhCCceEEEEEeCC
Confidence             33778899999999984 4444333321       222222110  0000    0000111   122456889999999


Q ss_pred             CCcEEEEEeCCCcEEEEecCCccCCCCC
Q 014433          386 EDWVISSVAEDNILQIWQMAENIYHDED  413 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~  413 (424)
                      +..+.+|+-..|++.+||..++.+....
T Consensus       228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  228 GRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CCEEEEECCCCCEEEEEECCCCCEeecc
Confidence            9966678779999999999998775443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.40  E-value=0.0004  Score=59.82  Aligned_cols=205  Identities=12%  Similarity=0.177  Sum_probs=114.5

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      -...+..|+|+|+...++|+....+.|..++.+.           ..+..+.-. -+..-+|++..++. ++++.-.++.
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~   87 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR   87 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence            3456999999998777999999999998888653           223333322 24577888876553 4444445899


Q ss_pred             EEEEeCCCCCCCCcccceeee-----ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC--CCCCCCeeee------
Q 014433          203 ICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT--PSVSKPVQSV------  269 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~--~~~~~~~~~~------  269 (424)
                      +.++++..............+     ..+...+..++|++.+..+++ +-...-..+|.++.  ..........      
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccc
Confidence            999998554322111111111     124466899999999887874 45555666776654  1110001111      


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC---------CCEEEEEEcCCCCcEEEEEECCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK---------EEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~---------~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      ......+.+++++|....+++....+..|..+|..  ++++..+....         ...-.|+|.++|.  |...+.-+
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEpN  242 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEPN  242 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTT
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCCc
Confidence            12334678999999988888888889999999944  56655554322         2467899999984  44555655


Q ss_pred             eEEEe
Q 014433          341 RLMVW  345 (424)
Q Consensus       341 ~i~iw  345 (424)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.39  E-value=7.4e-05  Score=74.00  Aligned_cols=146  Identities=21%  Similarity=0.291  Sum_probs=96.9

Q ss_pred             CCceEEEE-eCCCcEEEEeCCCCCCCCcccceeeeecCCcc-EeeEEEec-----CCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433          190 KEGHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHL-----RHEYLFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       190 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      ...+|+.. .....|+-.|++.++.      +..+..+... |.+++-..     .....| .|-.+..+..||.|-...
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKV------V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~  564 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKV------VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGN  564 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcE------EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCC
Confidence            34444443 3457788889988844      4445545433 55554321     122344 677788999999997541


Q ss_pred             CCCeee---eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          263 SKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       263 ~~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                       +.+..   .........|++-+.+|  .||+|+.+|.|++||-- ..+....+.+-..+|..|..+.+|+++||||  +
T Consensus       565 -k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~  638 (794)
T PF08553_consen  565 -KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC--K  638 (794)
T ss_pred             -ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee--c
Confidence             11210   11245568888888877  49999999999999943 2445555667789999999999999877766  4


Q ss_pred             CeEEEeeCC
Q 014433          340 RRLMVWDLS  348 (424)
Q Consensus       340 g~i~iwd~~  348 (424)
                      ..+.+++..
T Consensus       639 tyLlLi~t~  647 (794)
T PF08553_consen  639 TYLLLIDTL  647 (794)
T ss_pred             ceEEEEEEe
Confidence            568888764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=3.3e-05  Score=74.09  Aligned_cols=191  Identities=12%  Similarity=0.146  Sum_probs=126.3

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ..+.|++++  +. .|+-|..+|.|++++.....        .....|+..      .-.|. .+++|+.||+|.|..+-
T Consensus        40 D~is~~av~--~~-~~~~GtH~g~v~~~~~~~~~--------~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DK-FFALGTHRGAVYLTTCQGNP--------KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cc-eeeeccccceEEEEecCCcc--------ccccccccc------ccCCc-eEEEecCCCcEEEeecc
Confidence            456667765  33 79999999999999986542        111224333      44565 56799999999999988


Q ss_pred             CCCCCCCeeeeeccCCCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEE
Q 014433          259 TPSVSKPVQSVVAHQSEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                      +.+.   ...+ ....++.+|+++|+    ....+++|+..| +.++.-+-.+.... .+..-.++|.++.|..   .++
T Consensus       102 ~~~~---~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lI  173 (846)
T KOG2066|consen  102 TDDE---ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLI  173 (846)
T ss_pred             CCcc---ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEE
Confidence            8664   2222 34678999999997    223688999988 88876554333322 2455578999999973   478


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      |-++.+| |+|||+...........+...+        .....-..+.|.++.+ +++  |+..+|+|..++.+
T Consensus       174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~--------R~e~fpphl~W~~~~~-LVI--GW~d~v~i~~I~~~  235 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSV--------RPELFPPHLHWQDEDR-LVI--GWGDSVKICSIKKR  235 (846)
T ss_pred             EEecCCC-cEEEeccccceeeccCCCCCCC--------CcccCCCceEecCCCe-EEE--ecCCeEEEEEEecc
Confidence            8888888 9999998765433222111000        0111235678988876 443  45557999988833

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.37  E-value=7.2e-05  Score=69.99  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=103.1

Q ss_pred             EEecCCCceeEEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                      .+..-...+..-+|+|++..+....-..   ..+.+++++++......    .   ..+.-..-+|+|+++.++.+...|
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~----~---~~g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL----N---FNGNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee----c---cCCccCCccCCCCCCEEEEEECCC
Confidence            3444445667778999888644443322   35999999887553222    1   233445668999999998888888


Q ss_pred             Ce--EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          250 QY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       250 g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      |.  |.++|+.....    ..+....+.-+.-.|+|+|++++.+.+..|.-.||-....+.....+......-..-.|+|
T Consensus       260 g~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp  335 (425)
T COG0823         260 GSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP  335 (425)
T ss_pred             CCccEEEEcCCCCcc----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence            87  55557766552    2232223333366899999998888777786555544433333344443333333788999


Q ss_pred             CCCcEEEEEECCCe--EEEeeCCCC
Q 014433          328 KNETILASCCLGRR--LMVWDLSRI  350 (424)
Q Consensus       328 ~~~~~l~s~~~dg~--i~iwd~~~~  350 (424)
                      +|+.++.....+|.  |.+.|+...
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCC
Confidence            99865555544555  555555543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=1.5e-05  Score=75.40  Aligned_cols=209  Identities=14%  Similarity=0.212  Sum_probs=122.6

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      |+..|.--++...+. +++.|++.|.+++|+....        ... .....+..+.+..+..+++.. ++|.|+..|.|
T Consensus        32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~--------~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V  100 (726)
T KOG3621|consen   32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTG--------EMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRV  100 (726)
T ss_pred             CcceEEEEEeecCCc-eEEEecccceEEEEecCch--------hhh-cccccCccceEEEEEecchhH-hhhhhcCCceE
Confidence            344444445555554 8999999999999998762        111 112222344566677787665 78899999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC-CCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      .++.++.............-..|+..|++++|++++..++ +|...|+|..-.+.. .....+.+.+..-.+.|..+...
T Consensus       101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             EeehhhccCCCcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            9999987543322211111234788999999999998776 999999999988876 22222334444456777777765


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCC--EEEEEEcCC---CCcEEEEEECCCeEEEeeCCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEE--VFQVGWNPK---NETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~--v~~~~~sp~---~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .  .++|++... . -.+++... +. +..+. .....  -...+|-|.   ++.-.+.|+.-| .|+|..+..+
T Consensus       180 q--~~LLVStl~-r-~~Lc~tE~-et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G  247 (726)
T KOG3621|consen  180 Q--SYLLVSTLT-R-CILCQTEA-ET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAG  247 (726)
T ss_pred             c--ceehHhhhh-h-hheeecch-hH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecce
Confidence            3  344544433 2 23444432 11 11111 01111  234555553   122344455554 6788776543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.23  E-value=0.00075  Score=58.55  Aligned_cols=214  Identities=12%  Similarity=0.066  Sum_probs=116.7

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      +|.|..||..+          .+.+....--  .....+... +.+. .+++++.++.|..||..+++....      ..
T Consensus         2 ~g~l~~~d~~t----------G~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~------~~   63 (238)
T PF13360_consen    2 DGTLSALDPRT----------GKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWR------FD   63 (238)
T ss_dssp             TSEEEEEETTT----------TEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEE------EE
T ss_pred             CCEEEEEECCC----------CCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEE------ee
Confidence            57788888765          2333333221  111221122 2244 588888999999999988743222      22


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee-eecc--CC---CeeEEEecCCCCeEEEEEeCCCcE
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAH--QS---EVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~~--~~---~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      . ...+...... .+..++ .++.++.|+.+|.++++.   +-. ....  ..   ......+.  +. .++++..++.|
T Consensus        64 ~-~~~~~~~~~~-~~~~v~-v~~~~~~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l  134 (238)
T PF13360_consen   64 L-PGPISGAPVV-DGGRVY-VGTSDGSLYALDAKTGKV---LWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKL  134 (238)
T ss_dssp             C-SSCGGSGEEE-ETTEEE-EEETTSEEEEEETTTSCE---EEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEE
T ss_pred             c-cccccceeee-cccccc-cccceeeeEecccCCcce---eeeeccccccccccccccCceEe--cC-EEEEEeccCcE
Confidence            1 1111111122 233344 566788999999998875   332 1111  11   11223333  55 47777789999


Q ss_pred             EEEECCCCCCcceEecCCCCC----------EEEEEEcCCCCcEEEEEECCCe-EEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          299 KLFDLRKISTALHTFDSHKEE----------VFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~----------v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      ..+|+++ ++.+.........          +..-....++  .++.++.++. +.+ |+.++.              .+
T Consensus       135 ~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~--------------~~  196 (238)
T PF13360_consen  135 VALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGE--------------KL  196 (238)
T ss_dssp             EEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTE--------------EE
T ss_pred             EEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCC--------------EE
Confidence            9999998 6766666553322          1122222233  4556666664 555 888753              22


Q ss_pred             EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ....  ...+..+ ....+. .|+.++.++.|..||++++..
T Consensus       197 w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  197 WSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEE
T ss_pred             EEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCE
Confidence            3222  2223332 334556 455556899999999998753

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.17  E-value=0.00022  Score=66.81  Aligned_cols=189  Identities=14%  Similarity=0.156  Sum_probs=111.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          126 GEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ..+..-+|+|++..+....-..   ..++++++..        +....+..+.++   -..-+|+|+|+.++++...||.
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--------g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--------GKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccC--------CccceeeccCCc---cCCccCCCCCCEEEEEECCCCC
Confidence            4556678888887544432222   3588899887        223333333443   3467899999987888888887


Q ss_pred             EEEE--eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE--EcCCCCCCCCeeeeeccCCCeeE
Q 014433          203 ICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       203 i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      ..||  |+.....       ..+....+.-..=.|+|+|+.++.+.+..|.-.||  |+.....    ..+......-..
T Consensus       262 ~~iy~~dl~~~~~-------~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~  330 (425)
T COG0823         262 PDIYLMDLDGKNL-------PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSN  330 (425)
T ss_pred             ccEEEEcCCCCcc-------eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcC
Confidence            5555  5554431       11222222233667999999998888888875555  4444332    222222222237


Q ss_pred             EEecCCCCeEEEEEeCCCc--EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          279 LAFNPFNEWILATGSTDKT--VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      -.|+|+|.+++..+..+|.  |.+.|+.+... .+.+. +......-.|.|++..++.+++.
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence            7899999976666644555  67777766332 33332 34445566778888654444443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.16  E-value=0.0013  Score=61.46  Aligned_cols=217  Identities=13%  Similarity=0.028  Sum_probs=116.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-----eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-----YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN  214 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  214 (424)
                      .++.++.+|.++.||..+          .+.+..........     .+....  +. .++.+..+|.+..+|++++...
T Consensus       147 ~v~v~~~~g~l~a~d~~t----------G~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       147 LVVVRTNDGRLTALDAAT----------GERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             EEEEECCCCeEEEEEcCC----------CceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEe
Confidence            455567789999999876          22222222111110     011111  22 5778888899999999877543


Q ss_pred             CcccceeeeecCC--cc---E-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeE
Q 014433          215 KSLEAMQIFKVHE--GV---V-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI  288 (424)
Q Consensus       215 ~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  288 (424)
                      ..... ....+..  ..   + ....+.  +..++ +++.+|.++.+|.++++.   +-... .. .......  .+. .
T Consensus       214 W~~~~-~~~~g~~~~~~~~~~~~~p~~~--~~~vy-~~~~~g~l~a~d~~tG~~---~W~~~-~~-~~~~p~~--~~~-~  281 (377)
T TIGR03300       214 WEQRV-ALPKGRTELERLVDVDGDPVVD--GGQVY-AVSYQGRVAALDLRSGRV---LWKRD-AS-SYQGPAV--DDN-R  281 (377)
T ss_pred             eeecc-ccCCCCCchhhhhccCCccEEE--CCEEE-EEEcCCEEEEEECCCCcE---EEeec-cC-CccCceE--eCC-E
Confidence            22110 0000000  00   0 011111  33444 677899999999988764   22221 11 1112222  244 4


Q ss_pred             EEEEeCCCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          289 LATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       289 l~tg~~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +++++.+|.+..+|..+ ++.+..... ......+...  .+. .+++++.+|.|.++|..++              +.+
T Consensus       282 vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG--------------~~~  343 (377)
T TIGR03300       282 LYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDG--------------SFV  343 (377)
T ss_pred             EEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCC--------------CEE
Confidence            66778899999999987 555443321 1112222222  233 6788899999999998875              344


Q ss_pred             EEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          368 FIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       368 ~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      .....+...+. ...+. +++  |+.++.||.|+.|
T Consensus       344 ~~~~~~~~~~~~sp~~~-~~~--l~v~~~dG~l~~~  376 (377)
T TIGR03300       344 ARLKTDGSGIASPPVVV-GDG--LLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEcCCCccccCCEEE-CCE--EEEEeCCceEEEe
Confidence            44444433222 22232 333  5566789988776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.16  E-value=0.0015  Score=61.16  Aligned_cols=230  Identities=13%  Similarity=0.025  Sum_probs=120.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .+++++.+|.++.+|..+          .+....... ...+.+.-.. .+. .++.++.+|.|..||.++++.......
T Consensus       107 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~-~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       107 LVFVGTEKGEVIALDAED----------GKELWRAKL-SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             EEEEEcCCCEEEEEECCC----------CcEeeeecc-CceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            566778899999999876          222222221 1122111111 133 577788899999999988754332211


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC-CC---eeEEEecC--CCCeEEEEEe
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SE---VNCLAFNP--FNEWILATGS  293 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~---v~~v~~~~--~~~~~l~tg~  293 (424)
                      .......... ...... + . .++.+..+|.+..+|+++++............ ..   +..+.-+|  .+. .+.+++
T Consensus       174 ~~~~~~~~~~-~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~  248 (377)
T TIGR03300       174 VTPALTLRGS-ASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVS  248 (377)
T ss_pred             CCCceeecCC-CCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEE
Confidence            0000000000 111111 2 2 34577788999999998876421111000000 00   00010011  134 466777


Q ss_pred             CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC
Q 014433          294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH  373 (424)
Q Consensus       294 ~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h  373 (424)
                      .+|.++.||..+ ++.+..... . .......  .+. .++.++.+|.+..+|..++..              +......
T Consensus       249 ~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~--------------~W~~~~~  308 (377)
T TIGR03300       249 YQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE--------------LWKNDEL  308 (377)
T ss_pred             cCCEEEEEECCC-CcEEEeecc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE--------------EEccccc
Confidence            899999999987 555444332 1 1122222  233 466778899999999987642              2211110


Q ss_pred             -CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          374 -TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       374 -~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                       .........  .+. .+++++.+|.|++++..++.+.
T Consensus       309 ~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       309 KYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             cCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEE
Confidence             111122222  244 5777889999999999877553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.11  E-value=0.00064  Score=68.64  Aligned_cols=204  Identities=14%  Similarity=0.270  Sum_probs=123.9

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ..|.++.|..+.. -++.+..+|.|.+-|..+..       +.....-...|.+++|+|++. +++..+..+++.+-+-.
T Consensus        69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~-------~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN-SICVITALGDIILVDPETLE-------LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKD  139 (1265)
T ss_pred             cceEEEEEecccc-eEEEEecCCcEEEEcccccc-------eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEecc
Confidence            5899999998877 48888889999999876642       222334567899999999987 55566666676654321


Q ss_pred             ----CCCC--------CCCe--------eeeec---------------------cCCCeeEEEecCCCCeEEEEEe----
Q 014433          259 ----TPSV--------SKPV--------QSVVA---------------------HQSEVNCLAFNPFNEWILATGS----  293 (424)
Q Consensus       259 ----~~~~--------~~~~--------~~~~~---------------------~~~~v~~v~~~~~~~~~l~tg~----  293 (424)
                          ..+.        .+.+        ..+.+                     ..+.=++|.|--+|+ ++|+..    
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~  218 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESE  218 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEecc
Confidence                0000        0000        01110                     111234689999998 466622    


Q ss_pred             CC-CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE---CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433          294 TD-KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI  369 (424)
Q Consensus       294 ~d-g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      .+ +.|++||-.  +..-.+-....+.-.+++|-|.|. ++++-.   .|+.|.+|.-+.....           .....
T Consensus       219 ~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg-----------~f~l~  284 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHG-----------EFVLP  284 (1265)
T ss_pred             CCceeEEEeccc--chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCcccc-----------ccccC
Confidence            23 789999966  222222222233446799999885 666653   3567888886543211           11111


Q ss_pred             EcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCc
Q 014433          370 HGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN  407 (424)
Q Consensus       370 ~~~h~~~v~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~  407 (424)
                      ..-....+..++|+.++. +|+.   ......|++|-+..-
T Consensus       285 ~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            111223489999999998 6665   445555999987653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.00019  Score=66.49  Aligned_cols=258  Identities=13%  Similarity=0.131  Sum_probs=130.0

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC------CC---------------------------CCCCCCcEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP------PL---------------------------DGACSPDLR  173 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~------~~---------------------------~~~~~~~~~  173 (424)
                      .|+.+.|++... -||+|..+|.|.||.........      ..                           .....|..-
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            578899999765 68889999999999876432211      00                           001223333


Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--eeecCCccEeeEEEec---CC----CcEEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWHL---RH----EYLFG  244 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~---~~----~~~~~  244 (424)
                      +....++|++++.+.-|  +++.|..+|.+.|.|++............  ........++++.|.-   .+    .-++.
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            44557899999997543  79999999999999997653221100000  0111334677888752   11    13455


Q ss_pred             EEeCCCeEEEEEcCC-CCCC---CCeeeeeccCCCeeEEE-ecCC-C-------------------CeEEEEEeCCCcEE
Q 014433          245 SVGDDQYLLIWDLRT-PSVS---KPVQSVVAHQSEVNCLA-FNPF-N-------------------EWILATGSTDKTVK  299 (424)
Q Consensus       245 s~~~dg~i~i~d~~~-~~~~---~~~~~~~~~~~~v~~v~-~~~~-~-------------------~~~l~tg~~dg~i~  299 (424)
                      +|...|.+.+|.+.- ....   ........+.++|..|. ++.+ |                   +.++++ ..+..++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~ir  238 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIR  238 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceE
Confidence            888999999998852 1110   01111124556666554 3221 1                   113333 3467899


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcC----CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC---
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNP----KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG---  372 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---  372 (424)
                      ++...+ .+..+...........+.+-+    .+...|++-..+|.|++|.+...++.              ....-   
T Consensus       239 v~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei--------------~~~~l~~~  303 (395)
T PF08596_consen  239 VFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI--------------KSVSLPPP  303 (395)
T ss_dssp             EE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE--------------EEEE-SS-
T ss_pred             EEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh--------------hcccCCCc
Confidence            999887 344433332222334444531    23357888899999999999876432              11111   


Q ss_pred             -CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          373 -HTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       373 -h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                       +...+....++++|. +++-.+ ...+.++.+-
T Consensus       304 ~d~~~~~~ssis~~Gd-i~~~~g-psE~~l~sv~  335 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGD-IFYWTG-PSEIQLFSVW  335 (395)
T ss_dssp             --HHHHTT-EE-TTS--EEEE-S-SSEEEEEEEE
T ss_pred             cccccccccEECCCCC-EEEEeC-cccEEEEEEE
Confidence             223456778889998 454444 3345555443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.07  E-value=0.0061  Score=56.38  Aligned_cols=252  Identities=15%  Similarity=0.131  Sum_probs=126.4

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---------CceeEEEecCCCCceEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---------TEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~  195 (424)
                      ...+....|+|++. .+|.. .++.|++++........- ..... ...+.|-.         +.-.++-|||++..+++
T Consensus        42 ~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~~~l-T~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   42 PPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQETQL-TTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             ETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEEEES-ES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             ccccccceeecCCC-eeEEE-ecCceEEEECCCCCeEEe-ccccc-eeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            56788899999987 45554 467999998765211000 00000 00111111         12357889999885333


Q ss_pred             EEeCCCcEEE-----------------------------------EeCCCCCCCCcccceeeeecCCccEeeEEEecCCC
Q 014433          196 SGSDDAQICL-----------------------------------WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE  240 (424)
Q Consensus       196 s~~~dg~i~i-----------------------------------wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  240 (424)
                      .--.+..|..                                   +|+.+++.. .+........-...+..+.|.+++.
T Consensus       118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~  196 (353)
T PF00930_consen  118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGK  196 (353)
T ss_dssp             EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTE
T ss_pred             EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCc
Confidence            3333333332                                   333322211 0000001122345678899999887


Q ss_pred             cEE-EEEeCCC---eEEEEEcCCCCCCCCeeeeeccCCCe---eEEEec-CCCCeEEEEEeCCCcEEEEECCCCCCcceE
Q 014433          241 YLF-GSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEV---NCLAFN-PFNEWILATGSTDKTVKLFDLRKISTALHT  312 (424)
Q Consensus       241 ~~~-~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v---~~v~~~-~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  312 (424)
                      .++ .....+.   .+.++|..++... .+. .......|   ..+.|. +++..+|.....+|.-+||-+...+.....
T Consensus       197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~-~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~  274 (353)
T PF00930_consen  197 RLWVQWLNRDQNRLDLVLCDASTGETR-VVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ  274 (353)
T ss_dssp             EEEEEEEETTSTEEEEEEEEECTTTCE-EEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred             EEEEEEcccCCCEEEEEEEECCCCcee-EEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence            343 3333332   3667787765531 111 11222222   345554 667667777778886555544433444556


Q ss_pred             ecCCCCCEEE-EEEcCCCCcEEEEEECCC--eEEEeeCCCC-CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014433          313 FDSHKEEVFQ-VGWNPKNETILASCCLGR--RLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW  388 (424)
Q Consensus       313 ~~~h~~~v~~-~~~sp~~~~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  388 (424)
                      +....-.|.. +.|++.++.++.++..++  .-.||.+... .             ..+..+......-..+.|+|++++
T Consensus       275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-------------~~~~~LT~~~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-------------GEPKCLTCEDGDHYSASFSPDGKY  341 (353)
T ss_dssp             SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-------------TEEEESSTTSSTTEEEEE-TTSSE
T ss_pred             cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-------------CCeEeccCCCCCceEEEECCCCCE
Confidence            6655667755 778888877777777633  3444443322 1             112222322222258999999998


Q ss_pred             EEEEEeCC
Q 014433          389 VISSVAED  396 (424)
Q Consensus       389 ~l~s~~~d  396 (424)
                      ++.+++.-
T Consensus       342 ~v~~~s~~  349 (353)
T PF00930_consen  342 YVDTYSGP  349 (353)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEcCC
Confidence            88777653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00037  Score=67.60  Aligned_cols=109  Identities=16%  Similarity=0.291  Sum_probs=79.2

Q ss_pred             eEEEecCCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          129 NRARYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      +-+.|+|..+ ++|+++.    .|.|-||--...         .....+..-|   +++++|+|..- +|+.|-.-|.+.
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---------Pqr~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGE---------PQRDVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSD   84 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEecCCC---------CCccccccee---hhhhccChHHH-HHhhccccceeE
Confidence            4467999887 7777763    588988865431         1111122223   56799999665 789999999999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      +|..++...      -.....|+.+|..+.|+++|..+ +++..-|.+.+|...
T Consensus        85 v~~~~~~e~------htv~~th~a~i~~l~wS~~G~~l-~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   85 VQKTNTTET------HTVVETHPAPIQGLDWSHDGTVL-MTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEecCCcee------eeeccCCCCCceeEEecCCCCeE-EEcCCCceeEEEEee
Confidence            999876532      22344699999999999999754 599999999999776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.04  E-value=0.0066  Score=52.36  Aligned_cols=206  Identities=14%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             EEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEeCCCe
Q 014433          173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQY  251 (424)
Q Consensus       173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~  251 (424)
                      .+.+-...+.+|+|+|+...++++....+.|..++.+ ++      .++.+.-. .+....|++..++. ++++--.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~------vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~   87 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK------VLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR   87 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC------EEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence            3445556799999999877678888888898888874 32      22222222 35678889886664 3334445899


Q ss_pred             EEEEEcCCCCCCCCee---ee-----eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCcceE--------e
Q 014433          252 LLIWDLRTPSVSKPVQ---SV-----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHT--------F  313 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~---~~-----~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~--------~  313 (424)
                      +.++++..........   .+     ..+...+-.++|+|.+..++++ -...-..+|.++.  ....+..        .
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccc
Confidence            9999985433211111   11     1244568999999988865554 4555566666553  1111111        1


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-C------CCCcceEEeCCCC
Q 014433          314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-H------TSKISDFSWNPCE  386 (424)
Q Consensus       314 ~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h------~~~v~~~~~~~~~  386 (424)
                      ...-..+.+++++|....+++.+..+..|.++|... ..            .-...+.. .      -...-+++|.++|
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~------------~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RV------------VSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E------------EEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CE------------EEEEEeCCcccCcccccCCccEEEECCCC
Confidence            123346789999998888888888899999998433 21            11122221 1      1235689999999


Q ss_pred             CcEEEEEeCCCcEEEE
Q 014433          387 DWVISSVAEDNILQIW  402 (424)
Q Consensus       387 ~~~l~s~~~dg~i~vw  402 (424)
                      + +.++ ++-+..+++
T Consensus       234 ~-LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  234 N-LYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEEE-ETTTEEEEE
T ss_pred             C-EEEE-cCCceEEEe
Confidence            8 4444 677766665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.02  E-value=0.0089  Score=56.71  Aligned_cols=250  Identities=14%  Similarity=0.103  Sum_probs=131.7

Q ss_pred             eeEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433          128 VNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDD--  200 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~d--  200 (424)
                      +...+++|+++.++.+-+..|    .++++|+.+          ...+. .+..  .....+.|.+++..++++...+  
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t----------g~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET----------GKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT----------TEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTT
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC----------CcCcCCcccc--cccceEEEeCCCCEEEEEEeCccc
Confidence            335788999986555545545    599999987          22111 1111  1123499999988656665433  


Q ss_pred             --------CcEEEEeCCCCCCCCcccceeeeecCCcc--EeeEEEecCCCcEEEEEeCCC---eEEEEEcCCCC-CCCCe
Q 014433          201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPS-VSKPV  266 (424)
Q Consensus       201 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~s~~~dg---~i~i~d~~~~~-~~~~~  266 (424)
                              ..|..|.+.+....    ....+......  ...+..+++++.+++......   .+.+.|+.... .....
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~~~----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~  269 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQSE----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP  269 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred             ccccCCCCcEEEEEECCCChHh----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence                    23778888665321    12233333322  567889999998887665444   47888887741 11123


Q ss_pred             eeeeccCCCee-EEEecCCCCeEEEEEeC---CCcEEEEECCCCCC--cceEecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          267 QSVVAHQSEVN-CLAFNPFNEWILATGST---DKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       267 ~~~~~~~~~v~-~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      ..+......+. .+...  +..+++....   .+.|.-.++.....  ....+..+...+.-..+...+..+++....++
T Consensus       270 ~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  270 KLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG  347 (414)
T ss_dssp             EEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred             EEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence            33333333443 34443  3334443322   45777788887442  12245555554333333344555777777776


Q ss_pred             e--EEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCccC
Q 014433          341 R--LMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENIY  409 (424)
Q Consensus       341 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vw~~~~~~~  409 (424)
                      .  |+++++..+              ....... .-.+.|..+...++++.+.++.+   .-+++..||+.++.+
T Consensus       348 ~~~l~v~~~~~~--------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  348 SSRLRVYDLDDG--------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEEEETT-T--------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             ccEEEEEECCCC--------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4  778888711              1122211 12333566666666665555544   244677788877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=1.2e-05  Score=77.84  Aligned_cols=165  Identities=17%  Similarity=0.201  Sum_probs=113.6

Q ss_pred             cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-
Q 014433          218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-  296 (424)
Q Consensus       218 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-  296 (424)
                      +..+.+..|....+|++|+-..+++ +.|+..|.|++|++.++..   ......|.++|+-+.-+.+|..+|.+++... 
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL-~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHL-AVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceE-EeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCc
Confidence            4556677788999999999887655 6999999999999999875   5566789999999999999996555555444 


Q ss_pred             cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433          297 TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK  376 (424)
Q Consensus       297 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  376 (424)
                      -..+|++.....+.+++...    .++.|+..... -+.|+......|||+.+....++.-..          ..+....
T Consensus      1168 lsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~----------~~~~~y~ 1232 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED----KAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTD----------TVTSSYS 1232 (1516)
T ss_pred             hHHHhccccccCcccccccc----ceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCc----------chhhhhh
Confidence            57899998877788777653    46788776432 333444456899999987643321110          0011112


Q ss_pred             cceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          377 ISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       377 v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      -+.+.|+|+.. +|.   .||  .+||+...
T Consensus      1233 ~n~a~FsP~D~-LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSPCDT-LIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred             ccccccCCCcc-eEe---eCc--eeeeeccH
Confidence            25567888777 443   355  35776543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.017  Score=53.95  Aligned_cols=246  Identities=11%  Similarity=0.096  Sum_probs=152.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      ....+.+.|++..+.++-.....+.+.+...          .........-......++.++.+....+....+..|.+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~----------n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vi  101 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS----------NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVI  101 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeeccccc----------ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEE
Confidence            5667788888865555544444444444331          000011111113345778888888666667677999999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe--CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      |..........      . -......+++++++..+.++-.  .++.+.+.|..+...   +........+ ..++++|+
T Consensus       102 d~~~~~~~~~~------~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~~P-~~~a~~p~  170 (381)
T COG3391         102 DTATNTVLGSI------P-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGNTP-TGVAVDPD  170 (381)
T ss_pred             cCcccceeeEe------e-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCCCc-ceEEECCC
Confidence            97655332111      1 1226678999999988887777  478899999888664   3333332334 88999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcce-E---ecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALH-T---FDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~-~---~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~  358 (424)
                      +..++++-..++.|.++|... ..... .   ...-...-..+.++|++..+.++...+  +.+...|.....       
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-------  242 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-------  242 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-------
Confidence            997777777899999999775 22221 0   011123456799999997655555554  588888887642       


Q ss_pred             cCCCCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          359 AEDGPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       359 ~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                             ....  ..+.. ....+..+|++.+..+.-+..+.+.+-|..+..+
T Consensus       243 -------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         243 -------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             -------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence                   1111  11111 3567889999996444445567888888777544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.91  E-value=0.0031  Score=59.46  Aligned_cols=171  Identities=13%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014433          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG  228 (424)
Q Consensus       149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  228 (424)
                      .|+.+|+..................+.........+.++|++. .+++ ..||...|+.....         +.  ...+
T Consensus         3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~---------r~--k~~G   69 (443)
T PF04053_consen    3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAW---------RN--KAFG   69 (443)
T ss_dssp             EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTT---------EE--EEEE
T ss_pred             ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCC---------cc--cccC
Confidence            4666666653221111111223344555556688999999887 4555 55788888873221         11  1235


Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEE-EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIW-DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS  307 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~  307 (424)
                      ....++|.+.+  -+|+-...+.|.|+ ++.... .+.+.   . ...+..|-.   |. +|+..+. +.|.+||+.+ +
T Consensus        70 ~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-~k~i~---~-~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~-~  136 (443)
T PF04053_consen   70 SGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-VKSIK---L-PFSVEKIFG---GN-LLGVKSS-DFICFYDWET-G  136 (443)
T ss_dssp             E-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-T---------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--
T ss_pred             ceeEEEEecCc--cEEEEECCCeEEEEEcCcccc-ceEEc---C-CcccceEEc---Cc-EEEEECC-CCEEEEEhhH-c
Confidence            66788899854  36677778899996 333222 11121   1 122344433   65 5555554 4899999998 6


Q ss_pred             CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      +.+..+...  +|..+.|++++. ++|..+.+ .+.|++...
T Consensus       137 ~~i~~i~v~--~vk~V~Ws~~g~-~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  137 KLIRRIDVS--AVKYVIWSDDGE-LVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             -EEEEESS---E-EEEEE-TTSS-EEEEE-S--SEEEEEE-H
T ss_pred             ceeeEEecC--CCcEEEEECCCC-EEEEEeCC-eEEEEEecc
Confidence            888888753  489999999996 56666655 588877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.001  Score=63.84  Aligned_cols=109  Identities=12%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             ecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC------
Q 014433          236 HLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST------  308 (424)
Q Consensus       236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------  308 (424)
                      .++++..++   .++.|.+.|.++... ...+...-.-......++++|+|+++++++..+.+|.|+|+.+...      
T Consensus       285 vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            456765553   367899999987100 0012333334567788999999999888888999999999987442      


Q ss_pred             -----cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          309 -----ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       309 -----~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                           .+..... .......+|.++|. .+.|...|..|..|++..
T Consensus       362 ~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                 1223332 33445788999984 778888899999999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.90  E-value=0.022  Score=53.62  Aligned_cols=177  Identities=12%  Similarity=0.129  Sum_probs=88.5

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc-ceeeeecCC
Q 014433          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE-AMQIFKVHE  227 (424)
Q Consensus       149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~  227 (424)
                      .|+||+...           ..+..+.-..+.+.++.|..+.  .|++-..||.++++|+.... ...+. .........
T Consensus        62 ~I~iys~sG-----------~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e  127 (410)
T PF04841_consen   62 SIQIYSSSG-----------KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLE  127 (410)
T ss_pred             EEEEECCCC-----------CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCccc
Confidence            488998775           3344433333889999998854  37778899999999986432 10010 000011111


Q ss_pred             ccEeeEEEecCCCcEEEEEeCCCeEEEEEc-CCCCCCCCeeeeec-----cCC-CeeE-EEecCCCCeEEEEEeCCCcEE
Q 014433          228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDL-RTPSVSKPVQSVVA-----HQS-EVNC-LAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~-~~~~~~~~~~~~~~-----~~~-~v~~-v~~~~~~~~~l~tg~~dg~i~  299 (424)
                      ..+....+...|  ++ .-..++.+.+..- ......+.......     +.. .... ..++.+.. ..+....++.+.
T Consensus       128 ~~i~~~~~~~~G--iv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~  203 (410)
T PF04841_consen  128 CRIFAIWFYKNG--IV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIY  203 (410)
T ss_pred             ccccccccCCCC--EE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEE
Confidence            222222333233  22 2233444444322 21100000000000     000 1111 22333333 333444455666


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      +.+-... ..   +. ..+++..++.||+++ ++|.-..+|.+.|.....
T Consensus       204 ~i~~~~~-~~---i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  204 IIDENSF-KQ---ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             EEEcccc-cc---cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc
Confidence            5543321 11   22 246899999999996 788888899988886544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.0097  Score=55.55  Aligned_cols=207  Identities=14%  Similarity=0.078  Sum_probs=133.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe--CCCcE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQI  203 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i  203 (424)
                      .....++.++.+....++...++.|.+.|...          ....... .-......+++++++..+.++-.  .++++
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----------~~~~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~~~~v  142 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----------NTVLGSI-PVGLGPVGLAVDPDGKYVYVANAGNGNNTV  142 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcc----------cceeeEe-eeccCCceEEECCCCCEEEEEecccCCceE
Confidence            34457788888887788777789999999655          1111111 12225678999999885444444  36888


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC-CeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~v~~~  282 (424)
                      .+.|..+....      .....-..+ ..+++.|++..++++-..++.|.+.|........ .......-......+.++
T Consensus       143 svid~~t~~~~------~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~  215 (381)
T COG3391         143 SVIDAATNKVT------ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD  215 (381)
T ss_pred             EEEeCCCCeEE------EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence            88888766332      222211233 8899999999888777789999999977654321 000011223345678899


Q ss_pred             CCCCeEEEEEeCC--CcEEEEECCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          283 PFNEWILATGSTD--KTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       283 ~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |++.++.++-..+  +.+...|..+ +..... ..........+..+|.+..+.+.-+..+.+.+-|.....
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            9999766665554  6899999887 333332 222111566789999997555444556888888887643

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.85  E-value=0.00098  Score=66.30  Aligned_cols=145  Identities=16%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             CCcEEE-EEeCCCeEEEEEcCCCCCCCCeeeeeccCCC-eeEEEecC-----CCCeEEEEEeCCCcEEEEECCCCCCcce
Q 014433          239 HEYLFG-SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCLAFNP-----FNEWILATGSTDKTVKLFDLRKISTALH  311 (424)
Q Consensus       239 ~~~~~~-s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~v~~~~-----~~~~~l~tg~~dg~i~iwd~~~~~~~~~  311 (424)
                      ...+++ .......|+-.|+..++.   +..+..+... |..++-..     ... -...|-.+..+..||.|-.+..+.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKV---V~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKV---VEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLV  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcE---EEEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCcee
Confidence            334443 334567899999999886   6677666543 55554321     122 245677888999999997543322


Q ss_pred             EecC----CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          312 TFDS----HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       312 ~~~~----h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      .-..    .....+|++-+.+|  .||.|+.+|.||+||-- +.             +....+.+-..+|.++..+.||+
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~-------------~AKT~lp~lG~pI~~iDvt~DGk  631 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK-------------RAKTALPGLGDPIIGIDVTADGK  631 (794)
T ss_pred             eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch-------------hhhhcCCCCCCCeeEEEecCCCc
Confidence            2122    24456788877777  59999999999999942 21             22223345568999999999999


Q ss_pred             cEEEEEeCCCcEEEEecC
Q 014433          388 WVISSVAEDNILQIWQMA  405 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~  405 (424)
                      |+|+|+  +..|.+.+..
T Consensus       632 wilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  632 WILATC--KTYLLLIDTL  647 (794)
T ss_pred             EEEEee--cceEEEEEEe
Confidence            988875  4578887763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.0008  Score=62.26  Aligned_cols=140  Identities=17%  Similarity=0.329  Sum_probs=90.1

Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------CC
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------DD  249 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------~d  249 (424)
                      =+-+.|||.|. +|++--..| |.+|--..-      ..++.+. | ..|.-+.|||...+|+ +-+           ..
T Consensus       213 etyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f------~r~~RF~-H-p~Vq~idfSP~EkYLV-T~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  213 ETYVRWSPKGT-YLVTFHKQG-IALWGGESF------DRIQRFY-H-PGVQFIDFSPNEKYLV-TYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeEEecCCce-EEEEEeccc-eeeecCccH------HHHHhcc-C-CCceeeecCCccceEE-EecCCccccCcccCCC
Confidence            35689999998 788876654 778854332      2222222 4 3588899999988665 533           22


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      ..++|||++++...+....+......-.-+.|+.++.+ +|.-.. .+|.||+..+ -.++..-...-..|....|+|.+
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~  358 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTS  358 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCc
Confidence            57999999998864444333222223344689998884 666554 5799998776 23332222334678999999987


Q ss_pred             CcEEEE
Q 014433          330 ETILAS  335 (424)
Q Consensus       330 ~~~l~s  335 (424)
                      . +||-
T Consensus       359 ~-llAY  363 (698)
T KOG2314|consen  359 N-LLAY  363 (698)
T ss_pred             c-eEEE
Confidence            4 5653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.00055  Score=66.48  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=59.1

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .+++++|+|.. .+||.|-.-|.+.+|....          ...-.....|+.+|..+.||++|. .++++..-|.|.+|
T Consensus        61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~----------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lw  128 (1416)
T KOG3617|consen   61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT----------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLW  128 (1416)
T ss_pred             ehhhhccChHH-HHHhhccccceeEEEecCC----------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEE
Confidence            45569999965 5899999999999999876          222233446999999999999998 79999999999999


Q ss_pred             eCCC
Q 014433          207 DINA  210 (424)
Q Consensus       207 d~~~  210 (424)
                      ....
T Consensus       129 r~d~  132 (1416)
T KOG3617|consen  129 RYDV  132 (1416)
T ss_pred             Eeee
Confidence            8763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.0028  Score=58.88  Aligned_cols=206  Identities=12%  Similarity=0.145  Sum_probs=111.2

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC-------------------------------------cccceee
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-------------------------------------SLEAMQI  222 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------~~~~~~~  222 (424)
                      .|+.+.|.+... -|++|...|.|.||.....+...                                     .+.+...
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            478889988765 59999999999998654332110                                     1123334


Q ss_pred             eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--ec------cCCCeeEEEecC-----C--CCe
Q 014433          223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VA------HQSEVNCLAFNP-----F--NEW  287 (424)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~------~~~~v~~v~~~~-----~--~~~  287 (424)
                      +....++|++++.+.-|  ++|.|..+|.+.|.|+|.+..   +..-  ..      ....++++.|..     +  ..-
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            44557899999998766  778999999999999998764   2221  11      234678888752     1  123


Q ss_pred             EEEEEeCCCcEEEEECCC-C-C----CcceEecCCCCCEEEEE-EcCC-C-------------------CcEEEEEECCC
Q 014433          288 ILATGSTDKTVKLFDLRK-I-S----TALHTFDSHKEEVFQVG-WNPK-N-------------------ETILASCCLGR  340 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~-~-~----~~~~~~~~h~~~v~~~~-~sp~-~-------------------~~~l~s~~~dg  340 (424)
                      ++++|...|.+.+|.+-- . +    ........+.++|..+. ++.+ +                   +.++++++ +.
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~  235 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES  235 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence            788999999999998752 1 1    11112224556666555 3221 1                   12444444 55


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC----CCCCcEEEEEeCCCcEEEEecCC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN----PCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .++++...+.+.             ....+ ........+.+-    ..+...|++-..+|.++++.+-.
T Consensus       236 ~irv~~~~~~k~-------------~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  236 DIRVFKPPKSKG-------------AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EEEEE-TT---E-------------EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             ceEEEeCCCCcc-------------cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            699998876432             11111 111112223332    12233678888999999999865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.70  E-value=0.018  Score=52.45  Aligned_cols=147  Identities=14%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             CceEEEEeC----------CCcEEEEeCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          191 EGHLLSGSD----------DAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       191 ~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      ..+|++|..          .|.|.++++... .....++.+.... ..++|++++--  +..++++  ..+.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF--NGRLVVA--VGNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE--TTEEEEE--ETTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh--CCEEEEe--ecCEEEEEEccC
Confidence            346776643          289999999874 2122333333333 47889998866  3345433  458999999998


Q ss_pred             CCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCCEEEEEEcCCCCcEEEE
Q 014433          260 PSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       260 ~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      .+.   +.....+  ...+.++...  +. +++.|.....+.++..+.....+..+  ......++++.|-+++. .+++
T Consensus       117 ~~~---l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~  189 (321)
T PF03178_consen  117 SKT---LLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV  189 (321)
T ss_dssp             TSS---EEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred             ccc---chhhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence            662   2222222  3356666655  44 68889888888888655422322222  22355789999987775 7889


Q ss_pred             EECCCeEEEeeCCC
Q 014433          336 CCLGRRLMVWDLSR  349 (424)
Q Consensus       336 ~~~dg~i~iwd~~~  349 (424)
                      +..+|.+.++....
T Consensus       190 ~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  190 GDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTSEEEEEEE-S
T ss_pred             EcCCCeEEEEEECC
Confidence            99999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.65  E-value=0.018  Score=49.87  Aligned_cols=184  Identities=13%  Similarity=0.050  Sum_probs=99.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .+.+++.++.++.||..+          .+....... ...+...... .+. .++.++.++.|..+|..+++.......
T Consensus        38 ~v~~~~~~~~l~~~d~~t----------G~~~W~~~~-~~~~~~~~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~  104 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKT----------GKVLWRFDL-PGPISGAPVV-DGG-RVYVGTSDGSLYALDAKTGKVLWSIYL  104 (238)
T ss_dssp             EEEEEETTSEEEEEETTT----------SEEEEEEEC-SSCGGSGEEE-ETT-EEEEEETTSEEEEEETTTSCEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCC----------CCEEEEeec-cccccceeee-ccc-ccccccceeeeEecccCCcceeeeecc
Confidence            455567899999999876          333444443 2222111111 233 577777888999999888754322100


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC----------e-eEEEecCCCCeE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------V-NCLAFNPFNEWI  288 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~  288 (424)
                       ....... ..........+..+ +++..++.|..+|+++++.   +-........          + ..+.+. ++ . 
T Consensus       105 -~~~~~~~-~~~~~~~~~~~~~~-~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-  175 (238)
T PF13360_consen  105 -TSSPPAG-VRSSSSPAVDGDRL-YVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-R-  175 (238)
T ss_dssp             --SSCTCS-TB--SEEEEETTEE-EEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEETTEEEEEECC-TT-E-
T ss_pred             -ccccccc-cccccCceEecCEE-EEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeeecccccceEEE-CC-E-
Confidence             0000011 11112222224444 4677799999999998874   3333222211          1 233333 23 3 


Q ss_pred             EEEEeCCCc-EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          289 LATGSTDKT-VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       289 l~tg~~dg~-i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +..++.++. +.+ |+.+ ++.+....  ...+..+ ....+. .|+.++.++.|..||+++++
T Consensus       176 v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  176 VYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTE
T ss_pred             EEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCC
Confidence            555666675 555 9998 44333222  2233332 345554 56666699999999999863

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.65  E-value=0.037  Score=52.34  Aligned_cols=224  Identities=12%  Similarity=0.176  Sum_probs=111.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ...-.+..+.++|+++ ++++ +.+|.-.|+....          ...  .   ..+.....+|.+.+  .+|+-...+.
T Consensus        30 ~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~----------~r~--k---~~G~g~~~vw~~~n--~yAv~~~~~~   90 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALA----------WRN--K---AFGSGLSFVWSSRN--RYAVLESSST   90 (443)
T ss_dssp             E-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTT----------TEE--E---EEEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred             CCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccC----------Ccc--c---ccCceeEEEEecCc--cEEEEECCCe
Confidence            3455688999999887 5555 5578888888433          111  1   12445678899833  4888887899


Q ss_pred             EEEE-eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          203 ICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       203 i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      |.++ +++.. ....+.       ....+..|-.   |. +|+..+ ++.|.+||..+++.   +..+..  .+|..|.|
T Consensus        91 I~I~kn~~~~-~~k~i~-------~~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~---i~~i~v--~~vk~V~W  152 (443)
T PF04053_consen   91 IKIYKNFKNE-VVKSIK-------LPFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKL---IRRIDV--SAVKYVIW  152 (443)
T ss_dssp             EEEEETTEE--TT------------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred             EEEEEcCccc-cceEEc-------CCcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcce---eeEEec--CCCcEEEE
Confidence            9996 44322 111211       1123444432   55 443444 45899999998764   555442  24899999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCC--------C--CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKI--------S--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~--------~--~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ++++. ++|..+ +..+.|++....        +  ..+..+..-...|.+.+|..+  -++.|.. . .++-  +..+.
T Consensus       153 s~~g~-~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge  224 (443)
T PF04053_consen  153 SDDGE-LVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGE  224 (443)
T ss_dssp             -TTSS-EEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTE
T ss_pred             ECCCC-EEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCC
Confidence            99998 466655 446788775531        0  023333322568899999865  3444433 3 5665  22221


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                  ...+..+   ..++.=+.+.+... .+.....|+.+..+.+...
T Consensus       225 ------------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  225 ------------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             ------------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred             ------------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence                        1222222   33566667777555 5777788888888877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.59  E-value=0.004  Score=59.95  Aligned_cols=163  Identities=12%  Similarity=0.069  Sum_probs=98.0

Q ss_pred             ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe----------------------
Q 014433          236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS----------------------  293 (424)
Q Consensus       236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~----------------------  293 (424)
                      .|++..+..+.-..+.+.+.|..+.+.   ..++.- .....-++++|++.++++++.                      
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV---~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEV---AWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceE---EEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            445544433433456677777776442   222221 223455677777775444431                      


Q ss_pred             -----------------CCCcEEEEECCC----CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          294 -----------------TDKTVKLFDLRK----ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       294 -----------------~dg~i~iwd~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                                       .++.|.+.|.++    ....+..+. -......+.++|+|+++++++..+.+|.|.|+.+...
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                             124577788775    223333333 3556788999999998888888899999999988653


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ...-.  -+....+.....- ...-...+|.++|. ...|---|..|..|++...
T Consensus       356 ~~~~~--~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a  406 (635)
T PRK02888        356 LFDGK--IKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAA  406 (635)
T ss_pred             hhhcc--CCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHH
Confidence            21100  0000122222222 22346678999987 7888889999999999873

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.59  E-value=0.029  Score=52.83  Aligned_cols=182  Identities=13%  Similarity=0.002  Sum_probs=95.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEec--CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      .++.++.+|.+..+|..+++.............+. .....+.-+|  .+..++ .++.+|.+..+|+.+++.   +-..
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~---~W~~  282 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQI---VWKR  282 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCE---EEee
Confidence            46677788999999988775433221100000000 0001111111  134454 566789999999998764   1111


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      .  ......+..  .+. .++.++.+|.+..+|..+ ++.+-....-. ....+....  +. .|+.++.+|.+.+.|..
T Consensus       283 ~--~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        283 E--YGSVNDFAV--DGG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINRE  353 (394)
T ss_pred             c--CCCccCcEE--ECC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECC
Confidence            1  111112222  244 366677899999999987 44332222111 112222222  32 57788999999999988


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      ++.              .+....-....+. ...+ .++  .|+.++.||.|+.+++
T Consensus       354 tG~--------------~~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        354 DGR--------------FVAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR  393 (394)
T ss_pred             CCC--------------EEEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence            763              3333322212222 1122 133  3666688999988764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00041  Score=65.20  Aligned_cols=95  Identities=20%  Similarity=0.325  Sum_probs=73.5

Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee-EEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~tg~~dg~i~iwd~~~  305 (424)
                      ...+.-+.|+|.-+ ++|.+..+|.|.++.+.-.    .+-++..+...++ +++|.|+|. +||.|-.||+|++.|+.+
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q----Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ----RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEeccc----eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccC
Confidence            45678899999875 8899999999999988733    3556665677777 999999988 899999999999999998


Q ss_pred             CCCcceEecCCCCCEEEEEEcC
Q 014433          306 ISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       306 ~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      +.........-...|.++-|++
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCceeccccccccchheeeccc
Confidence            4433322223356788888874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0032  Score=58.24  Aligned_cols=142  Identities=17%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-------cEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~s~~~dg~i~i~d~~~~~~~~~~  266 (424)
                      |.++.....++-.|++.++.      +..+..+.. |+-+.+.|+..       .-| .|-.|..|.-||.|-... ..+
T Consensus       349 l~~~~~~~~l~klDIE~GKI------VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~-~kl  419 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI------VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGK-NKL  419 (644)
T ss_pred             eeCCCCcCcceeeeccccee------eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCc-cee
Confidence            44556666777888887744      344444444 66666666532       123 466788899999996442 122


Q ss_pred             eeeecc----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          267 QSVVAH----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       267 ~~~~~~----~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      ...+.|    .....|++-..+|  .+|+|+.+|.|++||- ...+....+.+-..+|..+..+.+|.++|+||  +..+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyL  494 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYL  494 (644)
T ss_pred             eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEE
Confidence            222222    3456677766655  5999999999999997 43556667788889999999999998766665  5567


Q ss_pred             EEeeCCC
Q 014433          343 MVWDLSR  349 (424)
Q Consensus       343 ~iwd~~~  349 (424)
                      .+-++.-
T Consensus       495 lLi~t~~  501 (644)
T KOG2395|consen  495 LLIDTLI  501 (644)
T ss_pred             EEEEEec
Confidence            7666643

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00044  Score=64.97  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCcee-EEEecCCCCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY-GLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg  201 (424)
                      .-+-.|..+.|+|.-. +||++..+|.|.+..++-           ..+.++.-|...++ +++|.|+|+ +||.|-.||
T Consensus        18 ~l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG   84 (665)
T KOG4640|consen   18 SLPINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDG   84 (665)
T ss_pred             ccccceEEEEEcCccc-hhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecCCCC-EEEEEecCC
Confidence            3445677899999765 999999999999999874           55667776777777 999999988 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL  237 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  237 (424)
                      +|++.|+.++......     .......|.++-|.+
T Consensus        85 ~I~L~Dve~~~~l~~~-----~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSF-----LFSVETDISKGIWDR  115 (665)
T ss_pred             eEEEEEccCCCceecc-----ccccccchheeeccc
Confidence            9999999887543221     112345677777763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0041  Score=57.60  Aligned_cols=146  Identities=13%  Similarity=0.160  Sum_probs=97.4

Q ss_pred             cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCC-c
Q 014433          237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKIST-A  309 (424)
Q Consensus       237 ~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~l~tg~~dg~i~iwd~~~~~~-~  309 (424)
                      .+...++.++.....++-.|+..++.   +....-+.. |+-+.+.|+...      --+.|-.+..|.-||.|-.+. .
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKI---VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKI---VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             cccceEeeCCCCcCcceeeeccccee---eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            34445566667777788899999875   556655554 777777776431      123567788999999996444 2


Q ss_pred             ceEecCCC----CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          310 LHTFDSHK----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       310 ~~~~~~h~----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                      +...+.|.    ..-.|.+-..+|  ++|+||.+|.|++||- .+.             +....+.+-..+|..+..+.+
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~-------------~AKTAlPgLG~~I~hVdvtad  482 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR-------------RAKTALPGLGDAIKHVDVTAD  482 (644)
T ss_pred             eeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhh-------------hhhhcccccCCceeeEEeecc
Confidence            33333332    234555555555  6999999999999997 332             222334566778999999999


Q ss_pred             CCcEEEEEeCCCcEEEEec
Q 014433          386 EDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~  404 (424)
                      |+++|+|+  +..+.+-++
T Consensus       483 GKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  483 GKWILATC--KTYLLLIDT  499 (644)
T ss_pred             CcEEEEec--ccEEEEEEE
Confidence            99877664  455655554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.49  E-value=0.0085  Score=43.91  Aligned_cols=102  Identities=10%  Similarity=-0.028  Sum_probs=66.2

Q ss_pred             eeEEEecC---CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          128 VNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       128 v~~~~~~p---~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      |++++++.   ++.+-|++|+.|..|+||+-..            .+..+. -...|++|+-...  ..|+.+..+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLGG--GRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcCC--CEEEEEecCCEEE
Confidence            56666655   5667899999999999999665            123333 4556778876654  3699999999999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEec---CCCcEEEEEeCCCeEE
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLL  253 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~s~~~dg~i~  253 (424)
                      +|+-...  ...      .+ .+..+.++++..   ++..-|++|-.+|.|-
T Consensus        67 vY~~~~R--lWR------iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQR--LWR------IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcce--eee------ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9976322  111      11 123466665543   3334456888888764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.00096  Score=63.58  Aligned_cols=113  Identities=14%  Similarity=0.211  Sum_probs=83.3

Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +++..++ +++.|+.-|.+++|+-...........+..+.+..+..+++. .++|+|+..|.|.++-+....        
T Consensus        40 c~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~--------  109 (726)
T KOG3621|consen   40 CVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKEL--------  109 (726)
T ss_pred             EeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccC--------
Confidence            3444466 699999999999998765333333443444566677778877 589999999999999987732        


Q ss_pred             CCCCCeeeEE---EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          360 EDGPPELLFI---HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       360 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                         |+...+.   ...|...|++++|++++. -+++|..-|.|..-.+..
T Consensus       110 ---p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 ---PRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ---CCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence               1222222   223678899999999999 699999999999988887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.076  Score=47.60  Aligned_cols=229  Identities=14%  Similarity=0.098  Sum_probs=125.5

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      -.|.+....++.+--..+.|.-|+..+           .....+ .+.+.+.++.....+. .|+++..  -+.+++++.
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-----------g~~~~~-~~p~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~   94 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPET-----------GKKRVF-PSPGGFSSGALIDAGG-RLIACEH--GVRLLDPDT   94 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCc-----------CceEEE-ECCCCcccceeecCCC-eEEEEcc--ccEEEeccC
Confidence            356676665677766778888888764           111222 2334444554444343 4555543  355666644


Q ss_pred             CCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEe-----C-----CCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          211 APKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVG-----D-----DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       211 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +.....+  .....+ .....+++...|+|...|-+-+     .     -|.|+.+|. .+..   +.....+-..-+.|
T Consensus        95 ~~~~t~~--~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~---~~l~~~~~~~~NGl  168 (307)
T COG3386          95 GGKITLL--AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV---VRLLDDDLTIPNGL  168 (307)
T ss_pred             CceeEEe--ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE---EEeecCcEEecCce
Confidence            3221111  011111 1246678888999875443222     0     133444443 2221   33333344566889


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCC-CC----C-cceEecCCCCCEEEEEEcCCCCcEEEEEECCC-eEEEeeCCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRK-IS----T-ALHTFDSHKEEVFQVGWNPKNETILASCCLGR-RLMVWDLSRIDE  352 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~-~~----~-~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~~~~  352 (424)
                      +|+|+++.++++=+..+.|.-|++.. ..    + ....+....+..-.++...+|. +.+++..+| .|.+|+.. +  
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G--  244 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G--  244 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-C--
Confidence            99999997666666678898888762 11    1 1122223445666777777774 443444443 89999887 3  


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAED  396 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d  396 (424)
                                  +++....-....+++++|- |+.+.|++|+...
T Consensus       245 ------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         245 ------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             ------------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence                        4455555554567788885 4455567776655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.41  E-value=0.038  Score=51.14  Aligned_cols=231  Identities=12%  Similarity=0.108  Sum_probs=117.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce---eee
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM---QIF  223 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~  223 (424)
                      .+.+.|||+.+           .....+......+....|+|+|. .++-.. ++.|.++++.++.. ..+..-   ..+
T Consensus        22 ~~~y~i~d~~~-----------~~~~~l~~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~   87 (353)
T PF00930_consen   22 KGDYYIYDIET-----------GEITPLTPPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIY   87 (353)
T ss_dssp             EEEEEEEETTT-----------TEEEESS-EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEE-EESES--TTTEE
T ss_pred             ceeEEEEecCC-----------CceEECcCCccccccceeecCCC-eeEEEe-cCceEEEECCCCCe-EEeccccceeEE
Confidence            46799999987           11222222256788999999987 455554 57899998765521 111000   000


Q ss_pred             ecC---------CccEeeEEEecCCCcEEEEEeCCCeEE-----------------------------------EEEcCC
Q 014433          224 KVH---------EGVVEDVAWHLRHEYLFGSVGDDQYLL-----------------------------------IWDLRT  259 (424)
Q Consensus       224 ~~~---------~~~v~~~~~~~~~~~~~~s~~~dg~i~-----------------------------------i~d~~~  259 (424)
                      .+-         -+.-..+.|+|++++++..--++..|.                                   |+|+.+
T Consensus        88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~  167 (353)
T PF00930_consen   88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS  167 (353)
T ss_dssp             ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred             cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence            000         112356889999987654433333333                                   344443


Q ss_pred             CCCCCCeeee---eccCCCeeEEEecCCCCeEEE-EEeCCC---cEEEEECCCCCCcceEecCCCCCE---EEEEEc-CC
Q 014433          260 PSVSKPVQSV---VAHQSEVNCLAFNPFNEWILA-TGSTDK---TVKLFDLRKISTALHTFDSHKEEV---FQVGWN-PK  328 (424)
Q Consensus       260 ~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~-tg~~dg---~i~iwd~~~~~~~~~~~~~h~~~v---~~~~~s-p~  328 (424)
                      ++.. .+...   ......+..+.|.+++..+++ ....+.   .+.++|..+....+.........|   ....|. ++
T Consensus       168 ~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~  246 (353)
T PF00930_consen  168 GKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD  246 (353)
T ss_dssp             TCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred             CcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence            3321 11111   122345778889888773333 333332   466777766322222222222222   355554 77


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce-EEeCCCCCcEEEEEeCCC--cEEEEecC
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD-FSWNPCEDWVISSVAEDN--ILQIWQMA  405 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg--~i~vw~~~  405 (424)
                      +..+|.....+|--+||-+....             .....+....-.|.. +.|++++..++.++..++  .-.||.+.
T Consensus       247 ~~~~l~~s~~~G~~hly~~~~~~-------------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  247 GNEFLWISERDGYRHLYLYDLDG-------------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             SSEEEEEEETTSSEEEEEEETTS-------------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             CCEEEEEEEcCCCcEEEEEcccc-------------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence            77777777788876666554422             112233333344544 678888886666766533  44455443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.41  E-value=0.054  Score=49.36  Aligned_cols=159  Identities=13%  Similarity=0.100  Sum_probs=75.4

Q ss_pred             ccEeeEEEecCCCcEEEEEeC---CC-eEEEEEcCCCCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEe----CCCc
Q 014433          228 GVVEDVAWHLRHEYLFGSVGD---DQ-YLLIWDLRTPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGS----TDKT  297 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~---dg-~i~i~d~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~----~dg~  297 (424)
                      ..+..+.|+|..+.+++-|-.   +. .-+||-+++...  ....+..+  ...+..=-|.|+|..+...+.    .+..
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            456678899998888866543   22 136676654332  11222222  223344468999987665443    2335


Q ss_pred             EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC----------------eEEEeeCCCCCcccCCCCcCC
Q 014433          298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----------------RLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       298 i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      |.-+|+.+... .....  ......+--++++. +++.=+.|.                -|.++++.....         
T Consensus       266 i~~~d~~t~~~-~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~---------  332 (386)
T PF14583_consen  266 IAGYDPDTGER-RRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF---------  332 (386)
T ss_dssp             EEEE-TTT--E-EEEEE--E-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE---------
T ss_pred             EEeeCCCCCCc-eEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce---------
Confidence            77777776322 22122  12344566678885 554433332                344556554321         


Q ss_pred             CCCeeeEE-------EcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          362 GPPELLFI-------HGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       362 ~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                         ..+..       ..++.. .=-...|+||++++|.++...|...||-+
T Consensus       333 ---~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  333 ---RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ---eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence               11111       122221 11357899999999999999998888754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.41  E-value=0.014  Score=42.87  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             EeeEEEe---cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433          230 VEDVAWH---LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI  306 (424)
Q Consensus       230 v~~~~~~---~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  306 (424)
                      |+++++.   .++.+-|++|+.|..|++|+-..     .+..+. -...|++++-...+  .|+.+..+|+|-+|+-.. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~-   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ-   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc-
Confidence            4555554   34556677999999999998653     244443 35678888776654  489999999999997543 


Q ss_pred             CCcceEecCCCCCEEEEEEcC---CCCcEEEEEECCCeEE
Q 014433          307 STALHTFDSHKEEVFQVGWNP---KNETILASCCLGRRLM  343 (424)
Q Consensus       307 ~~~~~~~~~h~~~v~~~~~sp---~~~~~l~s~~~dg~i~  343 (424)
                        .+-..+. +..++++++..   +|..-|++|-.+|.|-
T Consensus        73 --RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 --RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              2333333 34466666543   3333588888888764

>smart00320 WD40 WD40 repeats

Probab=97.37  E-value=0.00063  Score=39.10  Aligned_cols=38  Identities=26%  Similarity=0.615  Sum_probs=32.1

Q ss_pred             eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      .....+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            34555667888999999999887 789999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.37  E-value=0.029  Score=55.10  Aligned_cols=237  Identities=11%  Similarity=0.091  Sum_probs=119.9

Q ss_pred             CcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC------CcEEE
Q 014433          138 PFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD------AQICL  205 (424)
Q Consensus       138 ~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~i  205 (424)
                      ..+++.|+..      ..+..||..+        ..+.....+. +...-.+++... + .+.++|+.|      .++..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~--------~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~  353 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKT--------NEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVER  353 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCc--------CcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEE
Confidence            3477777766      3677788776        2233333333 222234455443 3 378888888      34667


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe-----EEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ||....+    +..+..+.......   ....-+..++|+||.||.     +-.||.++.+ ...+..+..   .....+
T Consensus       354 YD~~~~~----W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m~~---~r~~~g  422 (571)
T KOG4441|consen  354 YDPRTNQ----WTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPMLT---RRSGHG  422 (571)
T ss_pred             ecCCCCc----eeccCCccCccccc---eeEEECCEEEEEeccccccccccEEEecCCCCc-ccccCCCCc---ceeeeE
Confidence            8877653    22222222222111   122224568899998865     6678887765 222222221   222222


Q ss_pred             ecCCCCeEEEEEeCCC------cEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-----EEEeeCC
Q 014433          281 FNPFNEWILATGSTDK------TVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-----LMVWDLS  348 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg------~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-----i~iwd~~  348 (424)
                      ...-+..+.++|+.++      ++..||..+.. ..+..+........ ++.- ++ .+++.|+.|+.     |..||..
T Consensus       423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCC
Confidence            2222445888888654      56778876521 12222222122222 2222 23 57888887763     5667665


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-----cEEEEecCCccCCCCCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-----ILQIWQMAENIYHDEDD  414 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~  414 (424)
                      +..-            ..+.........+-.+.+  ++. +.+.|+.||     +|..||..++.+....+
T Consensus       500 ~~~W------------~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  500 TNQW------------TMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             CCce------------eEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            5321            112111112222222222  233 778888776     47788888887765554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.0006  Score=56.22  Aligned_cols=145  Identities=14%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEE
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF  321 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~  321 (424)
                      ++...+.||.|+-++++..+..  ...-.-+...-.-+.+   +. -+++|+.+|.|++|.....+.....+..-...|.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~  105 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID  105 (238)
T ss_pred             hhccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccce
Confidence            3446678899988888764421  1111112222111222   23 4889999999999988743333333333233443


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEE--eCCCc
Q 014433          322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSV--AEDNI  398 (424)
Q Consensus       322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~--~~dg~  398 (424)
                      ++.-.-+...+..+++.||.|+.|++...              ..+.....|. ..+..+.....++ +++.+  |.|..
T Consensus       106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--------------k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~  170 (238)
T KOG2444|consen  106 LGIPNGRDSSLGCVGAQDGRIRACNIKPN--------------KVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV  170 (238)
T ss_pred             eccccccccceeEEeccCCceeeeccccC--------------ceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence            33333233348889999999999998754              3344444555 4555555555566 56666  77888


Q ss_pred             EEEEecCCc
Q 014433          399 LQIWQMAEN  407 (424)
Q Consensus       399 i~vw~~~~~  407 (424)
                      ++.|++..-
T Consensus       171 ~k~W~ve~~  179 (238)
T KOG2444|consen  171 LKKWNVEKI  179 (238)
T ss_pred             hhhcchhhh
Confidence            888887654

>smart00320 WD40 WD40 repeats

Probab=97.28  E-value=0.00067  Score=38.99  Aligned_cols=37  Identities=35%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      +...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            3456778889999999999775 799999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.24  E-value=0.054  Score=46.54  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             ccEeeEEEecCCCcEEEEEeCCCe-EEEEEcCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeC----CCcEEE
Q 014433          228 GVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGST----DKTVKL  300 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~----dg~i~i  300 (424)
                      .....|+++|..+.-++.+-.-|+ ..++|......   ...+...+.  .--.=.|+|+|.++.||-..    -|.|-|
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~---pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE---PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcC---cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence            344578888888777777766666 56889887664   222211111  11123689999965555322    378999


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      ||.+..-+.+..+..|.-....+.|.++|+.++++
T Consensus       145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             EecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence            99998777888899999889999999999854444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.23  E-value=0.033  Score=47.09  Aligned_cols=128  Identities=11%  Similarity=-0.060  Sum_probs=79.7

Q ss_pred             ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC
Q 014433          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (424)
Q Consensus       186 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~  265 (424)
                      ..++.+.+++.|+..+.+.--|..+++......       -...+.+-+.- -++ .++.|+..|.+++.+.+++..   
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-------lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~---   85 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-------LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ---   85 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh-------hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh---
Confidence            334455578889999999888888775322111       12333333322 244 466899999999999999864   


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      +..+.....--......+++. ++..|+.|++.+..|.++ ..++...+...+.-.+-+..|
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecC
Confidence            333322222112233456676 899999999999999998 566666554333333344445

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.19  E-value=0.0016  Score=39.83  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK  157 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~  157 (424)
                      +........|.+++|+|... +||.|+.+|.|.||.++-
T Consensus         5 ~~~k~l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen    5 LGEKNLPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             ecccCCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence            33444566799999999886 999999999999999853

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.16  E-value=0.22  Score=46.83  Aligned_cols=227  Identities=7%  Similarity=-0.014  Sum_probs=116.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeE-EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      .+..++.+|.++.+|..+          .+...+..... .+.+ ....  +. .++.+..+|.+..+|.++++......
T Consensus       122 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~~~-~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        122 KVYIGSEKGQVYALNAED----------GEVAWQTKVAG-EALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             EEEEEcCCCEEEEEECCC----------CCCcccccCCC-ceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence            455677889999999876          22233222211 1111 1111  23 57778888999999998886543332


Q ss_pred             cee---eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-CC---CeeEEEecC--CCCeEE
Q 014433          219 AMQ---IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QS---EVNCLAFNP--FNEWIL  289 (424)
Q Consensus       219 ~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~v~~v~~~~--~~~~~l  289 (424)
                      ...   ...+...++    ..  +..+ +.++.+|.+..+|..+++........... ..   ....+..+|  .+. .+
T Consensus       188 ~~~~~~~~~~~~sP~----v~--~~~v-~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~v  259 (394)
T PRK11138        188 LDVPSLTLRGESAPA----TA--FGGA-IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VV  259 (394)
T ss_pred             CCCCcccccCCCCCE----EE--CCEE-EEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EE
Confidence            100   000111111    11  2234 46678899999999887642211110000 00   001111112  134 35


Q ss_pred             EEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433          290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI  369 (424)
Q Consensus       290 ~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      +.++.+|.+..+|..+ ++.+-....  .....+..  .+. .++.++.+|.+..+|..++...-...            
T Consensus       260 y~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~------------  321 (394)
T PRK11138        260 YALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQS------------  321 (394)
T ss_pred             EEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEccc------------
Confidence            5667789999999988 444433321  11112222  233 46677789999999998764211000            


Q ss_pred             EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       370 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ...+ ....+....  +. .|+.++.+|.|.+.|..++.+.
T Consensus       322 ~~~~-~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        322 DLLH-RLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             ccCC-CcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEE
Confidence            0000 011111221  33 4666788899999888887653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.14  E-value=0.18  Score=47.54  Aligned_cols=172  Identities=10%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC---CCCCeeeeeccCCCeeE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---VSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~v~~  278 (424)
                      .|.+|+....       .+..+.-..+.+.++.|+.+. .|+ +...||.+++||+....   ....+....-....+..
T Consensus        62 ~I~iys~sG~-------ll~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~  132 (410)
T PF04841_consen   62 SIQIYSSSGK-------LLSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFA  132 (410)
T ss_pred             EEEEECCCCC-------EeEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccc
Confidence            4888887543       222222223789999998865 354 66799999999996432   00011111111222333


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---C-----CCC-CEEE-EEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---S-----HKE-EVFQ-VGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~-----h~~-~v~~-~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      ..+...| ..+.+  .++.+.+..--........+.   .     +.. .... ..++.+.. +.+....++.+.+.+-.
T Consensus       133 ~~~~~~G-ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~  208 (410)
T PF04841_consen  133 IWFYKNG-IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDEN  208 (410)
T ss_pred             cccCCCC-EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcc
Confidence            3333334 12333  344444432211010111110   0     000 1111 22333332 33444445555533322


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ...                 .. ...+++..++.||+++ .+|.-..+|.+.|..-.
T Consensus       209 ~~~-----------------~i-~~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  209 SFK-----------------QI-DSDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSD  246 (410)
T ss_pred             ccc-----------------cc-cCCCCeEEEEECCCCC-EEEEEECCCCEEEEECc
Confidence            110                 01 1235799999999999 68888888988887644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.17  Score=45.40  Aligned_cols=202  Identities=11%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433          183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      +-.|.+....++.+--..+.|.-|+..++..       ..+. +.+.+.++..-..+..++ ++  +..+.++++.++..
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~   97 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGK   97 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCce
Confidence            4457776665666666788899998875522       2222 334445555444444444 33  23466677654442


Q ss_pred             CCCeeeee--ccCCCeeEEEecCCCCeEEEEEe-----C-----CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433          263 SKPVQSVV--AHQSEVNCLAFNPFNEWILATGS-----T-----DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       263 ~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~-----~-----dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                      ...+....  ......+.+...|+|...+-+.+     .     -|.|+.+|. . +..++.+..+-..-+.|+|||+++
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcEEecCceEECCCCC
Confidence            11111111  11245677888999884333322     1     133444443 2 445555555555668899999998


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-cEEEEecC
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-ILQIWQMA  405 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-~i~vw~~~  405 (424)
                      .++++=+..+.|.-|++....-.       ..............+..-.++...+|. +.+++..+| .|.+|+..
T Consensus       176 tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         176 TLYVADTPANRIHRYDLDPATGP-------IGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EEEEEeCCCCeEEEEecCcccCc-------cCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC
Confidence            77767677788888888631000       001122222333445566788888888 443444443 89999988

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.14  Score=44.37  Aligned_cols=178  Identities=15%  Similarity=0.239  Sum_probs=105.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +-...|.++.|+|+.+.++++....-.|.=.+.+.         .......+.+- ...-+|.|...+. +.++--.++.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---------dlirtiPL~g~-~DpE~Ieyig~n~-fvi~dER~~~  151 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---------DLIRTIPLTGF-SDPETIEYIGGNQ-FVIVDERDRA  151 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCC---------ceEEEeccccc-CChhHeEEecCCE-EEEEehhcce
Confidence            34455999999999887888765544443333322         12212223332 2334677776554 4555556888


Q ss_pred             EEEEeCCCCCCCCcccc----eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc------
Q 014433          203 ICLWDINAAPKNKSLEA----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH------  272 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------  272 (424)
                      +.++.+...........    +............++|.|.+..++ .+-.-.-+.||.+......-.......+      
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            88888876533222111    111222255688999999988776 5556666777766543311111111111      


Q ss_pred             -CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec
Q 014433          273 -QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       273 -~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  314 (424)
                       -..|.++.|++...++|+-+..++.+.-.|...  .++..+.
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G--~~~~~ls  271 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG--EVIELLS  271 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecCC--CeeeeEE
Confidence             235778889988888898888888888888774  4444443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.019  Score=52.48  Aligned_cols=160  Identities=15%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--  306 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--  306 (424)
                      .-+.+-|...++.+|++  ..|.+.-|-++......++..-....++|.+|.|+++++ +||+--.+.+|.+++....  
T Consensus        24 esngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   24 ESNGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS  100 (657)
T ss_pred             cccceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence            34556666666666655  345666676665544344444445677999999999998 7999999999999998431  


Q ss_pred             -CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          307 -STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       307 -~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       .....+.+..+..|....|+...+  +|..+..| +-+|-.....             +.++....|...|+-..|+++
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pek-------------rslRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhh-------------hhhhhhhhcccCccEEEEccc
Confidence             122333344456799999998754  66666555 7777765432             234444567778999999998


Q ss_pred             CCcEEEEEe-CCCcEEEEecCCc
Q 014433          386 EDWVISSVA-EDNILQIWQMAEN  407 (424)
Q Consensus       386 ~~~~l~s~~-~dg~i~vw~~~~~  407 (424)
                      .+..+.+.+ ..+++.=+.++++
T Consensus       165 t~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  165 TAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             cceEeeeccccccccccEEEeec
Confidence            885555555 5555555555554

>PHA02713 hypothetical protein; Provisional

Probab=97.02  E-value=0.066  Score=52.73  Aligned_cols=149  Identities=11%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             CcEEEEEeCCC-----eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC------------------
Q 014433          240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------------------  296 (424)
Q Consensus       240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg------------------  296 (424)
                      ..+++.||.++     .+..||..+.. ...+..+.........+..   +..+.+.|+.++                  
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence            45778888754     47889988754 1222221111111222233   334778887653                  


Q ss_pred             -----cEEEEECCCC-CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC------eEEEeeCCC-CCcccCCCCcCCCC
Q 014433          297 -----TVKLFDLRKI-STALHTFDSHKEEVFQVGWNPKNETILASCCLGR------RLMVWDLSR-IDEEQTPEDAEDGP  363 (424)
Q Consensus       297 -----~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg------~i~iwd~~~-~~~~~~~~~~~~~~  363 (424)
                           .+..||..+. ...+..+.........+++  ++ .+.+.|+.++      .+..||..+ ..-           
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-----------  493 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGW-----------  493 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCe-----------
Confidence                 4677887652 1112222111111111222  24 4666776542      356677665 221           


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC--cEEEEecCCccCC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN--ILQIWQMAENIYH  410 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vw~~~~~~~~  410 (424)
                       ..+..+.........+.+  +++ +.+.||.++  .+..||+.++.+.
T Consensus       494 -~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        494 -ELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             -eEccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCccccccc
Confidence             111112111222222233  345 888999888  6778888877654

>PHA02713 hypothetical protein; Provisional

Probab=96.96  E-value=0.052  Score=53.41  Aligned_cols=93  Identities=9%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC------cEEEEECCC--CCCcceEecCCCCCEEE
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------TVKLFDLRK--ISTALHTFDSHKEEVFQ  322 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg------~i~iwd~~~--~~~~~~~~~~h~~~v~~  322 (424)
                      .+..||.++.. ...+..+.........+.+.  + .+.+.|+.++      .+..||..+  ....+..+.........
T Consensus       433 ~ve~YDP~td~-W~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        433 KVIRYDTVNNI-WETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             eEEEECCCCCe-EeecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence            47778887754 22222221111111222222  4 4777787642      467898875  23334444433333333


Q ss_pred             EEEcCCCCcEEEEEECCC--eEEEeeCCCC
Q 014433          323 VGWNPKNETILASCCLGR--RLMVWDLSRI  350 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg--~i~iwd~~~~  350 (424)
                      +.+  ++ .+.++|+.+|  .+..||..+.
T Consensus       509 ~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        509 ILH--DN-TIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EEE--CC-EEEEEeeecceeehhhcCcccc
Confidence            333  23 5888999888  5666766653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.12  Score=43.88  Aligned_cols=111  Identities=6%  Similarity=0.050  Sum_probs=76.1

Q ss_pred             EEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433          234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF  313 (424)
Q Consensus       234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  313 (424)
                      ...++.+.+++.|+..+.+.-.|..+++..  ...  .-...+.+-+.- -|. +++.|...|.+++.+..+ +.....+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~--We~--ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f   89 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLI--WEA--ILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNF   89 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEE--eeh--hhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeee
Confidence            344566677888999999999999887741  111  123334333332 255 589999999999999998 5555555


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       314 ~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      .....--.+....+++. ++..++.|+..+..|.++..+
T Consensus        90 ~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen   90 VILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             eehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence            54332223445566774 899999999999999987543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.92  E-value=0.21  Score=49.21  Aligned_cols=186  Identities=13%  Similarity=0.073  Sum_probs=98.3

Q ss_pred             CceeEEEecCCCCcEEEEEe-----CCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          126 GEVNRARYMPQNPFLIATKT-----VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~-----~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+...+++|++..+.++..     .|+  .|.+++...           .......+.  ..+.-.|+|++. .|++.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------~~~~lt~g~--~~t~PsWspDG~-~lw~v~  415 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------VAVQVLEGH--SLTRPSWSLDAD-AVWVVV  415 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------cceeeecCC--CCCCceECCCCC-ceEEEe
Confidence            35778899999986655542     233  555555432           111112222  377889999877 355543


Q ss_pred             CC------------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE---EEcCCCCC-
Q 014433          199 DD------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI---WDLRTPSV-  262 (424)
Q Consensus       199 ~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i---~d~~~~~~-  262 (424)
                      ..            +.+.+.++..+..       ..  .....|..+.|+|+|..+.+..  +|.|.+   -....+.. 
T Consensus       416 dg~~~~~v~~~~~~gql~~~~vd~ge~-------~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~  484 (591)
T PRK13616        416 DGNTVVRVIRDPATGQLARTPVDASAV-------AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA  484 (591)
T ss_pred             cCcceEEEeccCCCceEEEEeccCchh-------hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence            22            2333333332211       00  2356799999999999776554  477777   33222220 


Q ss_pred             CCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECC
Q 014433          263 SKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       263 ~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      ......+. .-...+.++.|.+++. ++ ++..++...+|-+.-.+.....+..  ...++..++=++.  . ++....+
T Consensus       485 l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~  559 (591)
T PRK13616        485 LTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDAR  559 (591)
T ss_pred             ecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCC
Confidence            11111222 2333468899999887 44 5555554445554432322222222  2456777777763  2 4445556


Q ss_pred             Ce
Q 014433          340 RR  341 (424)
Q Consensus       340 g~  341 (424)
                      |.
T Consensus       560 g~  561 (591)
T PRK13616        560 AV  561 (591)
T ss_pred             ce
Confidence            63

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.25  Score=42.70  Aligned_cols=214  Identities=14%  Similarity=0.152  Sum_probs=121.5

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCe-EEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAE-VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-  199 (424)
                      +.-+.....|+|+|..+.-++.+-.-|+ ..++|.+........  .......+.+|.      .|||+|. +|+..-+ 
T Consensus        64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~--~s~~~RHfyGHG------vfs~dG~-~LYATEnd  134 (366)
T COG3490          64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL--VSQEGRHFYGHG------VFSPDGR-LLYATEND  134 (366)
T ss_pred             eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE--ecccCceeeccc------ccCCCCc-EEEeecCC
Confidence            3445555678999988777887777764 567888763221110  011123345553      6899998 5665433 


Q ss_pred             ----CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-----------------CCCeEEEEEcC
Q 014433          200 ----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLR  258 (424)
Q Consensus       200 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~i~d~~  258 (424)
                          -|.|-|||.+.+     +..+..+..|.-....+.|.++++.++++.+                 ..-++.+.|..
T Consensus       135 fd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a  209 (366)
T COG3490         135 FDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA  209 (366)
T ss_pred             CCCCCceEEEEecccc-----cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence                378999999743     2344556678777889999999986654432                 01123334433


Q ss_pred             CCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeCCCc----EEEEECCCCCCcceEecCC-------CCCEEEEEE
Q 014433          259 TPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKT----VKLFDLRKISTALHTFDSH-------KEEVFQVGW  325 (424)
Q Consensus       259 ~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~dg~----i~iwd~~~~~~~~~~~~~h-------~~~v~~~~~  325 (424)
                      ++....+ .++.  .+.-.|..++..++|. +++.+-..|.    --+.-....++++..+...       ...|-+++.
T Consensus       210 tG~liek-h~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~  287 (366)
T COG3490         210 TGNLIEK-HTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA  287 (366)
T ss_pred             ccchhhh-ccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee
Confidence            4332111 1122  2344677788888776 3333222221    0011111123444444322       245778888


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +.+...+.+|+=..+...+||..++.
T Consensus       288 n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         288 NRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             cccCCeEEEecCCCCeEEEEEcCCCc
Confidence            87766555566667778899999874

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.86  E-value=0.086  Score=50.05  Aligned_cols=125  Identities=12%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             CCCceeEEEecCCC----CceEEEEeCCCcEEEEeCCCCCCCC-cccceeeee---cCCccEeeEEEecCCCcEEEEEeC
Q 014433          177 HSTEGYGLSWSKFK----EGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFK---VHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       177 h~~~v~~l~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .=.-|.++.|.|-+    + .|++......|.||.+.-..... .+-..+...   ...---..+.|+|... ++++-..
T Consensus        55 qFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence            33458999999863    3 35556667899999987332211 110111111   0111224678999876 4445444


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~  305 (424)
                      ...-.+++++....  .+..-....+.|.|.+|.++|.+++++.+..=.-++||-..
T Consensus       133 ~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  133 RDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            44445677776553  22222245678999999999998777777666788998643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.018  Score=58.09  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=69.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      .++.|+..|.+...|+...-     .+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.   ++.+..|
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~---l~~i~e~  171 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI---LKVITEH  171 (1206)
T ss_pred             eEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc---eeeeeec
Confidence            58889999999998886541     11122223467999999999987 556899999999999998664   5555555


Q ss_pred             CCCeeEE---EecCCCCeEEEEEeCCCcEEEEEC
Q 014433          273 QSEVNCL---AFNPFNEWILATGSTDKTVKLFDL  303 (424)
Q Consensus       273 ~~~v~~v---~~~~~~~~~l~tg~~dg~i~iwd~  303 (424)
                      ..+.+.+   .+..++. .+.++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            5554444   4555555 5778777776  5554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.82  E-value=0.44  Score=44.55  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=27.5

Q ss_pred             CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ...+.+++.+|.+. +.|+...-|+|.++|+..+.
T Consensus       307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh
Confidence            34578899999985 77777777999999998763

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.79  E-value=0.41  Score=47.25  Aligned_cols=192  Identities=13%  Similarity=0.036  Sum_probs=98.2

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      .++..-.+++... + .+.++|+.+      .++..||...        ..+.....+............  .|. +.++
T Consensus       320 ~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~--------~~W~~~a~M~~~R~~~~v~~l--~g~-iYav  386 (571)
T KOG4441|consen  320 PSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRT--------NQWTPVAPMNTKRSDFGVAVL--DGK-LYAV  386 (571)
T ss_pred             CcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCC--------CceeccCCccCccccceeEEE--CCE-EEEE
Confidence            3444455566665 3 588899988      3667777766        334443333332222211222  143 7788


Q ss_pred             EeCCCc-----EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC------eEEEEEcCCCCCCCC
Q 014433          197 GSDDAQ-----ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ------YLLIWDLRTPSVSKP  265 (424)
Q Consensus       197 ~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg------~i~i~d~~~~~~~~~  265 (424)
                      |+.||.     |-.||..+.+-    .....+.   ..........-+..++++||.++      ++..||..+..- ..
T Consensus       387 GG~dg~~~l~svE~YDp~~~~W----~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-~~  458 (571)
T KOG4441|consen  387 GGFDGEKSLNSVECYDPVTNKW----TPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-TL  458 (571)
T ss_pred             eccccccccccEEEecCCCCcc----cccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-ee
Confidence            888864     66677765432    1111111   12222222222456888888544      467888887652 22


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCc-----EEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-----VKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~-----i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      +..+..-........+   +..+.+.|+.|+.     |..||.++.. ..+..+......+..+.+   +..+.+.|+.|
T Consensus       459 ~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~  532 (571)
T KOG4441|consen  459 IAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFD  532 (571)
T ss_pred             cCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEeccc
Confidence            2222222222222222   3358899998873     6778877521 122222222333322333   33578888877


Q ss_pred             Ce
Q 014433          340 RR  341 (424)
Q Consensus       340 g~  341 (424)
                      |.
T Consensus       533 ~~  534 (571)
T KOG4441|consen  533 GN  534 (571)
T ss_pred             Cc
Confidence            64

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.77  E-value=0.069  Score=50.67  Aligned_cols=155  Identities=14%  Similarity=0.213  Sum_probs=94.3

Q ss_pred             CceeEEEecCCCCceEEEEe--CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC----CCcEEEEEeCCCeE
Q 014433          179 TEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYL  252 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~s~~~dg~i  252 (424)
                      .++.+++|-. |+..+++.-  .+|.+++=|-.         .+    +.-..|..+.|.|-    .+.++ +......|
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~---------vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhV   84 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK---------VI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHV   84 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCCcc---------Ee----eccceeeeeeecCcccCCCCceE-EEeccceE
Confidence            4688999975 766666643  23443332221         11    23346889999885    34566 56677899


Q ss_pred             EEEEcCCC--CCCCCeeeeec-cCC----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433          253 LIWDLRTP--SVSKPVQSVVA-HQS----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW  325 (424)
Q Consensus       253 ~i~d~~~~--~~~~~~~~~~~-~~~----~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  325 (424)
                      .||-+...  +..+.+..... ...    -...+.|||... +|++-.....-.+++++.....++.--...+.|.|.+|
T Consensus        85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW  163 (671)
T PF15390_consen   85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW  163 (671)
T ss_pred             EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence            99998632  11122221111 111    123467999887 56665555555677777644444433345789999999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCC
Q 014433          326 NPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .++|..++++.+..=.-+|||-..
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecCch
Confidence            999988777766655677888543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.0082  Score=60.33  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=70.3

Q ss_pred             EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      .++.|+..|.+...|.+..-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+...+..           +.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l-----------~~i  168 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKIL-----------KVI  168 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcce-----------eee
Confidence            5889999999999999863233333333467999999999995 7889999999999999875321           222


Q ss_pred             EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ..+......|..+.+..++. .+.++...|.  +|++.
T Consensus       169 ~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  169 TEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            22222223344555555666 6777776665  66654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.73  E-value=0.23  Score=44.54  Aligned_cols=160  Identities=13%  Similarity=0.116  Sum_probs=91.8

Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~  266 (424)
                      |.++.-|.+-+.||++.-..+....+.. .+....+..-..++ ..-++...+..++ -.+.+|.|+-.|+..... +..
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~-F~Sy~G~v~~~dlsg~~~-~~~  220 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLY-FVSYEGNVYSADLSGDSA-KFG  220 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEE-EEBTTSEEEEEEETTSSE-EEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEE-EEecCCEEEEEeccCCcc-ccc
Confidence            4454468899999999999998554322 11112222222222 2334444443333 467889999988876542 112


Q ss_pred             eeeec----------cCCCeeEEEecCCCCeEEEEEe--C-----CC--cEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          267 QSVVA----------HQSEVNCLAFNPFNEWILATGS--T-----DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       267 ~~~~~----------~~~~v~~v~~~~~~~~~l~tg~--~-----dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      ..+..          -.+.-.-+++++....+++.-.  .     |+  .|-++|+.+ ++.+..+.. ..++.+|+.+.
T Consensus       221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsq  298 (342)
T PF06433_consen  221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQ  298 (342)
T ss_dssp             EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEES
T ss_pred             CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEcc
Confidence            22111          1123445777775554444322  1     22  477778887 677777775 45788999999


Q ss_pred             CCCcEEEEEE-CCCeEEEeeCCCCCc
Q 014433          328 KNETILASCC-LGRRLMVWDLSRIDE  352 (424)
Q Consensus       328 ~~~~~l~s~~-~dg~i~iwd~~~~~~  352 (424)
                      +..-+|++.+ .++.+.+||..+++.
T Consensus       299 d~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  299 DDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             SSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             CCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            8776776554 578999999998743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.70  E-value=0.31  Score=44.44  Aligned_cols=169  Identities=14%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCceeEEEecCCCC
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      ..+++.+.....+++|++++-.. + .++++ . .+.|.+|++...        . ......+. ....+.++...  +.
T Consensus        76 ~~~l~~i~~~~~~g~V~ai~~~~-~-~lv~~-~-g~~l~v~~l~~~--------~~l~~~~~~~-~~~~i~sl~~~--~~  140 (321)
T PF03178_consen   76 NFKLKLIHSTEVKGPVTAICSFN-G-RLVVA-V-GNKLYVYDLDNS--------KTLLKKAFYD-SPFYITSLSVF--KN  140 (321)
T ss_dssp             --EEEEEEEEEESS-EEEEEEET-T-EEEEE-E-TTEEEEEEEETT--------SSEEEEEEE--BSSSEEEEEEE--TT
T ss_pred             ceEEEEEEEEeecCcceEhhhhC-C-EEEEe-e-cCEEEEEEccCc--------ccchhhheec-ceEEEEEEecc--cc
Confidence            34788888888999999999873 4 34443 3 479999999872        2 12222222 22356666654  44


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC---C-CC-Ce
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---V-SK-PV  266 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~---~-~~-~~  266 (424)
                       +++.|..-..+.++..+...  ..+..+. -......++++.+-+++. .++++..+|.+.++......   . .. .+
T Consensus       141 -~I~vgD~~~sv~~~~~~~~~--~~l~~va-~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  141 -YILVGDAMKSVSLLRYDEEN--NKLILVA-RDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             -EEEEEESSSSEEEEEEETTT--E-EEEEE-EESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred             -EEEEEEcccCEEEEEEEccC--CEEEEEE-ecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccc
Confidence             79999988888888665421  1222222 122355688999986665 66689999999999876311   0 11 11


Q ss_pred             eee--eccCCCeeEE---EecCC--CC-----eEEEEEeCCCcEEEE
Q 014433          267 QSV--VAHQSEVNCL---AFNPF--NE-----WILATGSTDKTVKLF  301 (424)
Q Consensus       267 ~~~--~~~~~~v~~v---~~~~~--~~-----~~l~tg~~dg~i~iw  301 (424)
                      ...  ......|+++   ++.|.  +.     ..++.++.+|.|.+.
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            111  1234567777   55552  22     236777788888844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.45  E-value=0.86  Score=43.24  Aligned_cols=208  Identities=14%  Similarity=0.168  Sum_probs=107.2

Q ss_pred             EEecCCCCcEEEEEeCC----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc--eeEEEecCCCCceEEEEe
Q 014433          131 ARYMPQNPFLIATKTVS----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       131 ~~~~p~~~~~latg~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~  198 (424)
                      +.|.+++..++.+....          ..|+.|.+.+.        .......+......  ...+..++++..+++...
T Consensus       175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--------~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~  246 (414)
T PF02897_consen  175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--------QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS  246 (414)
T ss_dssp             EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---------GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred             EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC--------hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence            99999988777775433          24788888762        12212344443332  568889998885454444


Q ss_pred             CC---CcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCCCCCeeeeec
Q 014433          199 DD---AQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       199 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      ..   ..+.+.++.... ... .....+......+ ..+...  +..+++...   ..+.|...++...........+..
T Consensus       247 ~~~~~s~v~~~d~~~~~-~~~-~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~  322 (414)
T PF02897_consen  247 SGTSESEVYLLDLDDGG-SPD-AKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP  322 (414)
T ss_dssp             SSSSEEEEEEEECCCTT-TSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred             ccccCCeEEEEeccccC-CCc-CCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence            43   347777876541 001 1122222233333 333333  333443332   346777788877552111224445


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEEC---CCeEEEe
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCL---GRRLMVW  345 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iw  345 (424)
                      +...+.-..+...+.++++....++  .|+++|+.. +.....+.. -.+.|..+...++++.++++.+.   -+++.-|
T Consensus       323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~  401 (414)
T PF02897_consen  323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY  401 (414)
T ss_dssp             -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred             CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence            5554333333344666777777766  588889882 233333332 23456666666666666555544   3457777


Q ss_pred             eCCCCC
Q 014433          346 DLSRID  351 (424)
Q Consensus       346 d~~~~~  351 (424)
                      |+.++.
T Consensus       402 d~~t~~  407 (414)
T PF02897_consen  402 DLATGE  407 (414)
T ss_dssp             ETTTTC
T ss_pred             ECCCCC
Confidence            777653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.098  Score=53.36  Aligned_cols=149  Identities=11%  Similarity=0.067  Sum_probs=91.4

Q ss_pred             ceeEEEecCCCCce-EEEEeCCCcEEEEeCCCCCCCCcc--ccee---eeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433          180 EGYGLSWSKFKEGH-LLSGSDDAQICLWDINAAPKNKSL--EAMQ---IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (424)
Q Consensus       180 ~v~~l~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  253 (424)
                      ++..+...+++... ++..+++-.|..||++.-......  .++.   ..........++.|+|.=...++++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555555654422 333444457889999764322111  1111   11112345678899998776677888999999


Q ss_pred             EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC----CCCCEEEEEEcCCC
Q 014433          254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS----HKEEVFQVGWNPKN  329 (424)
Q Consensus       254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----h~~~v~~~~~sp~~  329 (424)
                      +..+.....  .... .......+|++|+|.|. .++.|...|++.-|-..-  +....+..    ....|.+|+|-...
T Consensus       182 V~~~~~~~~--~v~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  182 VKSTKQLAQ--NVTS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhh--hhcc-cCcccceeeEEeccccc-eeeEecCCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEecce
Confidence            988765331  1111 23456789999999998 699999999999886542  21112211    14789999998776


Q ss_pred             CcEEE
Q 014433          330 ETILA  334 (424)
Q Consensus       330 ~~~l~  334 (424)
                      ..+++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            54333

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.38  E-value=0.19  Score=49.65  Aligned_cols=155  Identities=9%  Similarity=0.048  Sum_probs=83.7

Q ss_pred             ccEeeEEEecCCCcEEEEEe-----CCC--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----
Q 014433          228 GVVEDVAWHLRHEYLFGSVG-----DDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----  295 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----  295 (424)
                      ..+.+.+++|++..+.++..     .|.  .|.+++.  +....++  ..  ....+.-.|+|+|.. +++....     
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~l--t~--g~~~t~PsWspDG~~-lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQV--LE--GHSLTRPSWSLDADA-VWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceee--ec--CCCCCCceECCCCCc-eEEEecCcceEE
Confidence            46788999999987765552     233  4555554  2221222  12  224788899999874 4444322     


Q ss_pred             -------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC---CCCCcccCCCCcCCCCCe
Q 014433          296 -------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL---SRIDEEQTPEDAEDGPPE  365 (424)
Q Consensus       296 -------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~  365 (424)
                             +.+.+.++.. +....   .....|..+.|||+|..+++..  +|.|.+=-+   ..+.  ...     .  .
T Consensus       423 v~~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~l-----~--~  487 (591)
T PRK13616        423 VIRDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YAL-----T--N  487 (591)
T ss_pred             EeccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--eee-----c--c
Confidence                   2333334433 22211   2356799999999998655544  467766322   2221  000     0  1


Q ss_pred             eeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ......+-...+.++.|..++. |++ +..++...+|.+.-
T Consensus       488 ~~~l~~~l~~~~~~l~W~~~~~-L~V-~~~~~~~~v~~v~v  526 (591)
T PRK13616        488 PREVGPGLGDTAVSLDWRTGDS-LVV-GRSDPEHPVWYVNL  526 (591)
T ss_pred             cEEeecccCCccccceEecCCE-EEE-EecCCCCceEEEec
Confidence            1111122233467899999998 553 34445555666543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.29  E-value=0.94  Score=42.04  Aligned_cols=207  Identities=15%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             eEEEE-eCCCcEEEEeCCCCCCCCcccceeeeec---CC----ccEeeEEEecCCCcEEEEEe------CCCeEEEEEcC
Q 014433          193 HLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKV---HE----GVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLR  258 (424)
Q Consensus       193 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~----~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~  258 (424)
                      +|+.. -..+.|.|.|+.+......+  .+.+..   +.    .....+..-|+++.+ +++-      .-|-+.++|-.
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l--~KvIe~~ev~~k~g~s~PHT~Hclp~G~im-IS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRL--HKVIEPEEVFEKTGLSRPHTVHCLPDGRIM-ISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EE--EEEE-HHHHHHHH-EEEEEEEEE-SS--EE-EEEEEETTS-S--EEEEE-TT
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCce--EeeeCHHHHHhhcCCCCCceeeecCCccEE-EEeccCCCCCCCCcEEEEcCc
Confidence            55554 47889999999866544333  122221   11    222334445677544 3432      23457777776


Q ss_pred             CCCCCCCeeeeec---cCCCeeEEEecCCCCeEEEEEe--------------------CCCcEEEEECCCCCCcceEecC
Q 014433          259 TPSVSKPVQSVVA---HQSEVNCLAFNPFNEWILATGS--------------------TDKTVKLFDLRKISTALHTFDS  315 (424)
Q Consensus       259 ~~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~tg~--------------------~dg~i~iwd~~~~~~~~~~~~~  315 (424)
                      +-..   ......   ....-..+-|.|... +++|..                    ...++.+||+.+ .++++++..
T Consensus       166 tf~v---~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idL  240 (461)
T PF05694_consen  166 TFEV---KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDL  240 (461)
T ss_dssp             T--E---EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES
T ss_pred             cccc---cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEec
Confidence            5432   222222   122345667777555 565543                    235899999998 788888875


Q ss_pred             CCC--CEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCCcccC---CCC----cCCC-CCeeeEEEcCCCCCcceEEeC
Q 014433          316 HKE--EVFQVGWN--PKNETILASCCLGRRLMVWDLSRIDEEQT---PED----AEDG-PPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       316 h~~--~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~----~~~~-~~~~~~~~~~h~~~v~~~~~~  383 (424)
                      ...  ....+.|.  |....=++.+...++|..|--.....=+.   ..-    .+.. -+.++..+..-..-|+++..|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            432  35566665  44444455555555555554322111000   000    0000 000100001112458999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCc
Q 014433          384 PCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .|+++|.+++=.+|.|+.||++..
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            999988888889999999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.12  Score=52.84  Aligned_cols=151  Identities=12%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             ccEeeEEEecCCCcEEEEE-eCCCeEEEEEcCCCCCC-----CCeee---eeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          228 GVVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVS-----KPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~-~~dg~i~i~d~~~~~~~-----~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      .++..+...++.....+.- +.+-.|..||++.-...     .++..   .........++.|+|.-....|+...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566666666654333333 33446889999863321     11111   111223456888999776667778889999


Q ss_pred             EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      ++.-+......+..+.. ...+++++|+|.|.+ ++.|-..|++.-|...-.-. ..+.    +|+..      ....|.
T Consensus       181 ~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik-~~ip----~Pp~~------e~yrvl  247 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIK-SEIP----EPPVE------ENYRVL  247 (1405)
T ss_pred             hhhhhhhhhhhhcccCc-ccceeeEEeccccce-eeEecCCCeEEEeeccccee-eccc----CCCcC------CCccee
Confidence            99887764444444443 567899999999975 88899999988886643211 1110    01110      135688


Q ss_pred             eEEeCCCCCcEEE
Q 014433          379 DFSWNPCEDWVIS  391 (424)
Q Consensus       379 ~~~~~~~~~~~l~  391 (424)
                      ++.|-....++++
T Consensus       248 ~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  248 SVTWLSTQEFLVV  260 (1405)
T ss_pred             EEEEecceeEEEE
Confidence            8999876664433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.23  E-value=0.8  Score=40.61  Aligned_cols=229  Identities=14%  Similarity=0.151  Sum_probs=118.2

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      ..|+.|+.+| +++++....         ..... .. +...|..+...+.-. .|++- .|+.+.++++..-.......
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~---------~~~~~-i~-~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDP---------SKPTR-IL-KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             CEEEEEECCC-EEEEEecCC---------cccee-Ee-ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccc
Confidence            3688888888 999998320         11121 21 233499999988665 33333 35999999997654332110


Q ss_pred             cee--------eeecCCccEeeEE--EecCCCcEEEEEeCCCeEEEEEcCCCCC-C-CCeeeeeccCCCeeEEEecCCCC
Q 014433          219 AMQ--------IFKVHEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSV-S-KPVQSVVAHQSEVNCLAFNPFNE  286 (424)
Q Consensus       219 ~~~--------~~~~~~~~v~~~~--~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~v~~v~~~~~~~  286 (424)
                      ...        ........+...+  -...+...+ +......|.+|....... . +....+. -...+.+++|.+  .
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~  149 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--N  149 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--C
Confidence            000        0011223344444  112333334 344556899998877422 1 2344433 357889999983  3


Q ss_pred             eEEEEEeCCCcEEEEECCCCCCcceEecC------------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          287 WILATGSTDKTVKLFDLRKISTALHTFDS------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       287 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                       .++.|..+ ...+.|+.+ +.+...+..            ...++..+.... +. +|++.  |..-.+.|... ...+
T Consensus       150 -~i~v~~~~-~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e-~Ll~~--~~~g~fv~~~G-~~~r  221 (275)
T PF00780_consen  150 -KICVGTSK-GFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NE-FLLCY--DNIGVFVNKNG-EPSR  221 (275)
T ss_pred             -EEEEEeCC-ceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeCC-ce-EEEEe--cceEEEEcCCC-CcCc
Confidence             46666644 588889885 333222211            112343444433 33 44432  33333334322 1110


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                                ......   .....++++.  .+|+++. + ++.|.||++.++.+.
T Consensus       222 ----------~~~i~W---~~~p~~~~~~--~pyli~~-~-~~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  222 ----------KSTIQW---SSAPQSVAYS--SPYLIAF-S-SNSIEVRSLETGELV  260 (275)
T ss_pred             ----------ccEEEc---CCchhEEEEE--CCEEEEE-C-CCEEEEEECcCCcEE
Confidence                      011111   2245566664  5655544 4 356999999998654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.18  E-value=0.016  Score=48.00  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      .+...+.||.|+-++++..+...     +.-..+...-..+.   .+. -+++|+.+|.|.+|....-...  ...+..-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~-----rse~~~~e~~~v~~---~~~-~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC-----RSERFIDEGQRVVT---ASA-KLMVGTSDGAVYVFNWNLEGAH--SDRVCSG  100 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh-----hhhhhhhcceeecc---cCc-eEEeecccceEEEecCCccchH--HHhhhcc
Confidence            35556778888888876542210     00001111111111   123 3458999999999988732210  0111112


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-CCEEEEEEcCCCCcEEEEE--ECCCeEEEeeCCC
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASC--CLGRRLMVWDLSR  349 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~l~s~--~~dg~i~iwd~~~  349 (424)
                      ...|-++--.-+...+..+++.||.|+.|++.- .+.+.....|+ .++..+..+..++ +++.+  |.|..++.|++..
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence            233434333322333788999999999999875 55555555666 4555555555553 46666  6777777777765


Q ss_pred             C
Q 014433          350 I  350 (424)
Q Consensus       350 ~  350 (424)
                      .
T Consensus       179 ~  179 (238)
T KOG2444|consen  179 I  179 (238)
T ss_pred             h
Confidence            4

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.16  E-value=0.8  Score=40.04  Aligned_cols=155  Identities=11%  Similarity=0.062  Sum_probs=87.5

Q ss_pred             ceeEEEecCCCCcEEEEE--eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          127 EVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      .+...++++++..+.++.  .....++++....           .....+.  ...+..-.|.+++. +.+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------PVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------cceeecc--CCccccccccCCCC-EEEEEcCCCceE
Confidence            577899999998655555  2334555555443           1111122  23677889999865 555555566666


Q ss_pred             EEe-CCCCCCCCcccceee-eecCCccEeeEEEecCCCcEEEEE--eCCCeEEEEEcCCCCCC------CCeeeeeccCC
Q 014433          205 LWD-INAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPSVS------KPVQSVVAHQS  274 (424)
Q Consensus       205 iwd-~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~--~~dg~i~i~d~~~~~~~------~~~~~~~~~~~  274 (424)
                      ++. ...+.. .   .... ...-...|..+.++|+|..+.+..  ..++.|.+--+......      .++........
T Consensus        91 ~~~~~~~g~~-~---~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~  166 (253)
T PF10647_consen   91 VVRDSASGTG-E---PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS  166 (253)
T ss_pred             EEEecCCCcc-e---eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence            664 222211 1   1111 111112899999999998776555  23577777765432221      12222223356


Q ss_pred             CeeEEEecCCCCeEEEEEe-CCCcEEE
Q 014433          275 EVNCLAFNPFNEWILATGS-TDKTVKL  300 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~-~dg~i~i  300 (424)
                      .++.++|.+++. +++.+. .++.+..
T Consensus       167 ~v~~v~W~~~~~-L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  167 DVTDVAWSDDST-LVVLGRSAGGPVVR  192 (253)
T ss_pred             cceeeeecCCCE-EEEEeCCCCCceeE
Confidence            889999999887 444444 3443443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.12  E-value=0.023  Score=34.73  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=29.0

Q ss_pred             CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ...|..++|+|... +||.+..+|.|.+++++..
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence            34688999999999 8999999999999999544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.11  E-value=1.2  Score=41.64  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE  318 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~  318 (424)
                      ....+.+|+.+|.+. +.|+...=|.|.++|+.+ ...++.+++-..
T Consensus       306 ~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~-~~vvrmWKGYRd  350 (415)
T PF14655_consen  306 SKREGESICLSPSGR-LAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD  350 (415)
T ss_pred             CCceEEEEEECCCCC-EEEEEcCCCcEEEEECCC-ChhhhhhccCcc
Confidence            344578999999977 677777779999999998 677777766443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.11  E-value=1.1  Score=41.03  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=114.7

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE----ecCCCceeEEEecCC--CCceEEEEeCC
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL----RGHSTEGYGLSWSKF--KEGHLLSGSDD  200 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~--~~~~l~s~~~d  200 (424)
                      ..+.|+|.|++. ++++ ...|.|++++....        ....+..+    .........++++|+  ...+|+.....
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~~~g~--------~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~   72 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVDKDGS--------LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN   72 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEETTTE--------ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEeCCCc--------CcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence            357899999985 5554 66999999993331        00111111    123446789999994  11234433321


Q ss_pred             ---------CcEEEEeCCCCCCC-Cccc-ceeeeec---CCccEeeEEEecCCCcEEEEEeCC-------------CeEE
Q 014433          201 ---------AQICLWDINAAPKN-KSLE-AMQIFKV---HEGVVEDVAWHLRHEYLFGSVGDD-------------QYLL  253 (424)
Q Consensus       201 ---------g~i~iwd~~~~~~~-~~~~-~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~~d-------------g~i~  253 (424)
                               ..|.-|........ ...+ .+.....   ....-..|.|.|++ .|+++.+..             |.|.
T Consensus        73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~il  151 (331)
T PF07995_consen   73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKIL  151 (331)
T ss_dssp             E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEE
T ss_pred             ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEE
Confidence                     23444444333100 0011 1111111   22345669999999 455555433             2333


Q ss_pred             EEEcCCCC-----------CCCCeeeeeccCCCeeEEEecCC-CCeEEEE-EeCCCcEEEEECCCCC-------------
Q 014433          254 IWDLRTPS-----------VSKPVQSVVAHQSEVNCLAFNPF-NEWILAT-GSTDKTVKLFDLRKIS-------------  307 (424)
Q Consensus       254 i~d~~~~~-----------~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~t-g~~dg~i~iwd~~~~~-------------  307 (424)
                      -.+....-           ....+. ..++. ....++|+|. +. ++++ -+.++.=.|--++...             
T Consensus       152 ri~~dG~~p~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~  228 (331)
T PF07995_consen  152 RIDPDGSIPADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY  228 (331)
T ss_dssp             EEETTSSB-TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred             EecccCcCCCCCccccCCCceEEEE-EeCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence            33332110           000010 11222 2467899998 54 4433 2233322222222110             


Q ss_pred             ---------------CcceEecCCCCCEEEEEEcCCCC------cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433          308 ---------------TALHTFDSHKEEVFQVGWNPKNE------TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       308 ---------------~~~~~~~~h~~~v~~~~~sp~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                                     .|+..+..| ..++.+.|.....      .+|++.-..+.|....+.......          ..
T Consensus       229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~----------~~  297 (331)
T PF07995_consen  229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT----------EE  297 (331)
T ss_dssp             TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE----------EE
T ss_pred             CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc----------ce
Confidence                           234444443 5677777764321      355555556677777765332110          11


Q ss_pred             eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      ...+......+.++++.|+|. |+++...+|.|.
T Consensus       298 ~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy  330 (331)
T PF07995_consen  298 EEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY  330 (331)
T ss_dssp             EEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred             EEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence            111234455799999999999 777777788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=1.7  Score=42.95  Aligned_cols=183  Identities=12%  Similarity=0.174  Sum_probs=90.0

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec
Q 014433          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV  225 (424)
Q Consensus       146 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  225 (424)
                      ..-.|+||++..           .....+.-...++..+.|+.+..  |++...+|++++|++-....... .  .....
T Consensus        62 a~~~I~If~~sG-----------~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~-s--vg~e~  125 (829)
T KOG2280|consen   62 ARPYIRIFNISG-----------QLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESN-S--VGFES  125 (829)
T ss_pred             cceeEEEEeccc-----------cchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhhhccc-c--ccccc
Confidence            345688999876           22323332333788999998654  88889999999999864422110 0  00122


Q ss_pred             CCccEeeEEEecCCCcEEEEEeCCCeEEE-EEcCCCCCCCCeeeeeccCCCeeEEEecCCC--CeEEEEEe-CCCcEEEE
Q 014433          226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLI-WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--EWILATGS-TDKTVKLF  301 (424)
Q Consensus       226 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~tg~-~dg~i~iw  301 (424)
                      ....|..+.+...|  ++ +-..+|.+.+ -+...+.. ...........+-+|-...+.+  ..+++--. ..+ ..++
T Consensus       126 ~~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~  200 (829)
T KOG2280|consen  126 QMSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC  200 (829)
T ss_pred             ccCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence            23345555555554  22 3334455443 33333221 1111111111111222222221  11111111 111 1111


Q ss_pred             ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       302 d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      -..........+....+.+..+..||+.+ +|+--...|.|.+-.+...
T Consensus       201 q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  201 QVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             ceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchh
Confidence            11211122233333346788999999986 7888888998888776654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.92  E-value=1.3  Score=41.72  Aligned_cols=152  Identities=13%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             EEecCCCCceEE-EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC-------cEEEEEeCCCeEEEE
Q 014433          184 LSWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLIW  255 (424)
Q Consensus       184 l~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~s~~~dg~i~i~  255 (424)
                      +-.+.+..++|+ .|..-..++-.|++.++.      +..+..|..-  -+.|.|...       .-+ +|-.+..|.-.
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrI  542 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRI  542 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEe
Confidence            333333333443 455555666667766643      3334444433  455655432       123 45566777777


Q ss_pred             EcCCCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEE
Q 014433          256 DLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       256 d~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                      |.|.....-.+...+  .......|..-...|  ++|+|+..|-|++||--. .+....+.+-...|..+..+.+|..+|
T Consensus       543 DPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~il  619 (776)
T COG5167         543 DPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHIL  619 (776)
T ss_pred             cccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEE
Confidence            877654211111111  112233344433333  599999999999999653 344455667788999999999999777


Q ss_pred             EEEECCCeEEEeeCCC
Q 014433          334 ASCCLGRRLMVWDLSR  349 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~  349 (424)
                      |||  ...+.+-|++-
T Consensus       620 aTC--k~yllL~d~~i  633 (776)
T COG5167         620 ATC--KNYLLLTDVPI  633 (776)
T ss_pred             Eee--cceEEEEeccc
Confidence            776  34577777753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.91  E-value=1.1  Score=39.29  Aligned_cols=163  Identities=10%  Similarity=0.042  Sum_probs=88.1

Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE-CCCCC
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD-LRKIS  307 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd-~~~~~  307 (424)
                      .+.+.++++++..+.+....++.-.+|-.+.+.....+.    ....+..-.|++++. +.+....+...+++. .....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence            688999999998665554233333344333333211111    234788889999965 565655566666663 22212


Q ss_pred             CcceEecCC--CCCEEEEEEcCCCCcEEEEEE--CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC
Q 014433          308 TALHTFDSH--KEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       308 ~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  383 (424)
                      .........  ...|+.+.+||+|..+.+...  .++.|.+=-+.........     .-...+.........+.+++|.
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~-----~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR-----RLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc-----eeccceEecccccCcceeeeec
Confidence            222222222  128999999999987555542  3566776655432211000     0001122222334578999999


Q ss_pred             CCCCcEEEEEeCCCcEEE
Q 014433          384 PCEDWVISSVAEDNILQI  401 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~v  401 (424)
                      +++..++++...++.+..
T Consensus       175 ~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCEEEEEeCCCCCceeE
Confidence            999843344344443443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=95.66  E-value=0.81  Score=45.08  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             CcEEEEEeCC------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--------cEEEEECCC
Q 014433          240 EYLFGSVGDD------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--------TVKLFDLRK  305 (424)
Q Consensus       240 ~~~~~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--------~i~iwd~~~  305 (424)
                      ..+++.||.+      ..+..||+.+..- ..+..+........++..   +..+++.|+.++        .+.+||..+
T Consensus       390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        390 NLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCC
Confidence            4577777732      4588899887542 222211111111122222   334777776532        388888875


Q ss_pred             CC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCC
Q 014433          306 IS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSR  349 (424)
Q Consensus       306 ~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~  349 (424)
                      .. ..+..+.........+.+  ++ .+++.|+.+     ..+.+||..+
T Consensus       466 ~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        466 NKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCC
Confidence            21 111111111111122222  34 466666654     3567777665

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.58  E-value=0.0061  Score=60.03  Aligned_cols=135  Identities=11%  Similarity=0.097  Sum_probs=77.3

Q ss_pred             CcEEEEEEeccCCceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEE------
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS------  185 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~------  185 (424)
                      +.+.+.-.-+-...+.-+.|+|-  +...+..+-.++.|++.+++..           ....+.+|...++.++      
T Consensus       169 ~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~  237 (1283)
T KOG1916|consen  169 PQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGV  237 (1283)
T ss_pred             cceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH-----------HHHHHHhcCCCcccHHHHhhch
Confidence            34444433344456677788772  3346777888899999888762           1122445666555544      


Q ss_pred             -----ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCC---------CcEEEEEeCCC
Q 014433          186 -----WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRH---------EYLFGSVGDDQ  250 (424)
Q Consensus       186 -----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~~~~s~~~dg  250 (424)
                           .+|+|. .|+.++.||.++.|.+.-... ....++..++.|. .+-.|.-++...         ..+|-+...+.
T Consensus       238 ~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nr  315 (1283)
T KOG1916|consen  238 LKLASLSPDGT-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNR  315 (1283)
T ss_pred             hhheeeCCCCc-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCc
Confidence                 477777 688888888888887653322 2224455566666 333333333221         12232333456


Q ss_pred             eEEEEEcCCCC
Q 014433          251 YLLIWDLRTPS  261 (424)
Q Consensus       251 ~i~i~d~~~~~  261 (424)
                      .+++|....-+
T Consensus       316 e~k~w~~a~w~  326 (1283)
T KOG1916|consen  316 EEKFWAEAPWQ  326 (1283)
T ss_pred             ceeEeeccchh
Confidence            67888765543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.56  E-value=2.5  Score=41.05  Aligned_cols=154  Identities=8%  Similarity=0.055  Sum_probs=77.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEe---------CCCeEEEEEcCCCCC
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---------DDQYLLIWDLRTPSV  262 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~---------~dg~i~i~d~~~~~~  262 (424)
                      .++.++.+|.|..+|.++++............ ....+ ....+.  +..++ .++         .+|.+..+|..+++.
T Consensus       112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             eEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence            68888889999999998886543322110000 00001 111122  12233 333         367889999988774


Q ss_pred             CCCeeeeec----------------cC-CCe-eEEEecCCCCeEEEEEeCCC------------------cEEEEECCCC
Q 014433          263 SKPVQSVVA----------------HQ-SEV-NCLAFNPFNEWILATGSTDK------------------TVKLFDLRKI  306 (424)
Q Consensus       263 ~~~~~~~~~----------------~~-~~v-~~v~~~~~~~~~l~tg~~dg------------------~i~iwd~~~~  306 (424)
                      .-.......                +. ..+ .+.++++.+. +++.++.++                  .|.-+|+.+ 
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t-  265 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT-  265 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-
Confidence            211111000                00 001 1234444444 466666554                  688889887 


Q ss_pred             CCcceEecCCCCCE------EEEEEc----CCC--CcEEEEEECCCeEEEeeCCCCCc
Q 014433          307 STALHTFDSHKEEV------FQVGWN----PKN--ETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       307 ~~~~~~~~~h~~~v------~~~~~s----p~~--~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ++.+-.++.-....      ....+.    -++  ..+++.++.+|.+...|..++..
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence            55554443211100      000111    112  12567777888888888887754

The alignment model contains an 8-bladed beta-propeller.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.47  E-value=0.0032  Score=61.91  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=61.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCC--CCceEEEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKF--KEGHLLSG  197 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~--~~~~l~s~  197 (424)
                      +.+|.|-.++|...+.-.++  -.-|...||++.....+      ..+...+   ..-...+.-+.|.|-  .+.++..+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~  201 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG  201 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeeec
Confidence            45678888888542211122  33478899998763222      2222211   122334455666653  22357777


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEE
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS  245 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  245 (424)
                      -.++.|++.+.+...       ...+.+|...+.+++|...|-.+++.
T Consensus       202 ~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~  242 (1283)
T KOG1916|consen  202 LKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLAS  242 (1283)
T ss_pred             cCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhhee
Confidence            788999988876542       13355688888888876665444433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.43  E-value=1.6  Score=38.09  Aligned_cols=172  Identities=12%  Similarity=0.194  Sum_probs=98.8

Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILATGSTDKTVKLFDL  303 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~  303 (424)
                      +-...+.++.|+|+.+.+|++....-.| |+=...+..   +.++.- .-...-.|.+...|. +.++--.++.+.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~i-VElt~~Gdl---irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEGDL---IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceE-EEEecCCce---EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence            4455699999999999998665544444 443333443   333211 123445677776565 3445556778888877


Q ss_pred             CCCCCc---------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC-CeeeEEEcCC
Q 014433          304 RKISTA---------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH  373 (424)
Q Consensus       304 ~~~~~~---------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~h  373 (424)
                      ......         +......+..--.++|.|.... |..+-.-.-+.||.+.............+.. ..-++     
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f-----  231 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF-----  231 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceE-----
Confidence            642211         1111222567788999999875 5566666667787776432111111000000 00111     


Q ss_pred             CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      -..|.++.|++....+++-+.+++.+.--+...+
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            2247888999876667888788888777777665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.35  E-value=1.6  Score=43.44  Aligned_cols=117  Identities=12%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             cEeeEEEecC-CCcEEEEEeCCCeEEEEEcCC-------C----------CCCCCeeeeeccCCCeeEEEec--CCCCeE
Q 014433          229 VVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRT-------P----------SVSKPVQSVVAHQSEVNCLAFN--PFNEWI  288 (424)
Q Consensus       229 ~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~-------~----------~~~~~~~~~~~~~~~v~~v~~~--~~~~~~  288 (424)
                      .|+.|....- +..+|+.|.+||.|.+|.+++       .          ...+|...+. ....+..++++  ... ++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence            4566654432 345778899999999997631       0          0112222222 34578889987  544 48


Q ss_pred             EEEEeCCCcEEEEECCCCCC--cceEecCCCCCEEEEEEcCCC--C---cEEEEEECCCeEEEeeC
Q 014433          289 LATGSTDKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKN--E---TILASCCLGRRLMVWDL  347 (424)
Q Consensus       289 l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~sp~~--~---~~l~s~~~dg~i~iwd~  347 (424)
                      ||+++....|.||-......  ....-..|...|-+|+|-++.  +   -.+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888876554211  111111356788999998754  2   26778888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=95.29  E-value=3.9  Score=41.59  Aligned_cols=200  Identities=6%  Similarity=0.026  Sum_probs=99.6

Q ss_pred             ceeEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC--
Q 014433          127 EVNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--  200 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--  200 (424)
                      .+..+.++|+++.++.+...+|    .|++.|+.+.        ... ...+.+ .  -..++|.+++..++++...+  
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------NWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------CCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence            4567889999984444433333    6888888651        100 111111 1  14699999988655654432  


Q ss_pred             ---CcEEEEeCCCCCCCCcccceeeeecCCccEe-eEEEecCCCcEEEEEe--CCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVE-DVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                         ..|..+++.++....    ...+........ .+..+.++..+++...  .++.+.+++...... .+...+.....
T Consensus       196 ~~~~~v~~h~lgt~~~~d----~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~  270 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQD----ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKD  270 (686)
T ss_pred             CCCCEEEEEECCCChhHC----eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCC
Confidence               357778887663211    112222222222 2333446666664443  346788888643221 11111211122


Q ss_pred             CeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCCcceEecCC-C-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          275 EVNCLAFNPFNEWILATGSTD---KTVKLFDLRKISTALHTFDSH-K-EEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~h-~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      ....+. +..+. +++....+   ..|...++.... ....+..+ . ..|..+.+..  +.++++...+|.-+++-+.
T Consensus       271 ~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        271 HEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence            222222 33233 33333222   234444554322 22344444 2 3688888873  3578888888876666554

>PHA03098 kelch-like protein; Provisional

Probab=95.06  E-value=1.2  Score=44.02  Aligned_cols=152  Identities=11%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             CcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC------CcEEEEECCCCC-
Q 014433          240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD------KTVKLFDLRKIS-  307 (424)
Q Consensus       240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d------g~i~iwd~~~~~-  307 (424)
                      ..+++.||.+     ..+..||..+..- .....+...... .+++..  +..+++.|+.+      ..+..||..+.. 
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKW-REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCce-eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            4577788765     3477788876542 111111111111 122222  33477777742      358888887521 


Q ss_pred             CcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--------eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGR--------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      ..+..+....... +++. .++ .+++.|+.++        .+.+||..+..-....        .+..    .......
T Consensus       419 ~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~~~----~r~~~~~  483 (534)
T PHA03098        419 SKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--------SLNF----PRINASL  483 (534)
T ss_pred             eecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCC--------CCCc----ccccceE
Confidence            1111111111111 1222 233 4666665431        3777887654321110        0000    0001111


Q ss_pred             EEeCCCCCcEEEEEeCC-----CcEEEEecCCccCCCCC
Q 014433          380 FSWNPCEDWVISSVAED-----NILQIWQMAENIYHDED  413 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~~~~~  413 (424)
                      +.+  ++. +++.||.+     +.+.+||+.++.+....
T Consensus       484 ~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        484 CIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             EEE--CCE-EEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence            222  455 67777654     47889999888765443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.06  E-value=2.1  Score=42.71  Aligned_cols=121  Identities=10%  Similarity=0.058  Sum_probs=73.5

Q ss_pred             eeEEEecCC-CCceEEEEeCCCcEEEEeCCCC--------------CCCCcccceeeeecCCccEeeEEEe--cCCCcEE
Q 014433          181 GYGLSWSKF-KEGHLLSGSDDAQICLWDINAA--------------PKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLF  243 (424)
Q Consensus       181 v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~  243 (424)
                      |+.|....- +...|+.|..||.|.+|.++.-              .....+++...+. ....++.++++  ... .++
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEE
Confidence            444443322 3347899999999999976321              0001112222222 35588999998  554 578


Q ss_pred             EEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC--C---eEEEEEeCCCcEEEEEC
Q 014433          244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--E---WILATGSTDKTVKLFDL  303 (424)
Q Consensus       244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~---~~l~tg~~dg~i~iwd~  303 (424)
                      |+++....|.||-............-..+..-|.+|+|-++.  +   -.+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888887655422111111112356678899987654  1   25778888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=2.4  Score=39.43  Aligned_cols=123  Identities=15%  Similarity=0.239  Sum_probs=79.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .-.|+|.+|+|++|++ ++|+--.+.+|.+++.......      .....+.+..+..|.+..|+.+..  +|.....| 
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~------l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-  133 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ------LEYTQECKTKNANILGFCWTSSTE--IAFITDQG-  133 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh------hHHHHHhccCcceeEEEEEecCee--EEEEecCC-
Confidence            3457899999999986 8999999999999998542111      111222333445689999987633  66555444 


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTP  260 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~  260 (424)
                      +-+|.+....     ..++..+.|...|+...|.++.+.++.+.+ ...++.=+-++++
T Consensus       134 ~e~y~v~pek-----rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  134 IEFYQVLPEK-----RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             eEEEEEchhh-----hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            5566554322     234556678888999999998776555544 3444444444443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.51  E-value=0.15  Score=30.18  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCC
Q 014433          274 SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       274 ~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~  305 (424)
                      +.+.++.|+|...  -+|+.+-.-|.|.|+|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999997544  5788888889999999995

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.45  E-value=4.4  Score=38.11  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=81.1

Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC---CCCceEEEEeCCCcEEEEeCCCC
Q 014433          135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAA  211 (424)
Q Consensus       135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~  211 (424)
                      +++...|++|+..|.++||+.......+      ....--..-..+|..+..-+   ......++.-.-..+.+|.+...
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~  107 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQP------EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV  107 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCC------ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence            4455689999999999999985521111      11111223456787777532   22222333355577888887432


Q ss_pred             CCC----CcccceeeeecCC--ccEeeEEEecC----CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          212 PKN----KSLEAMQIFKVHE--GVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       212 ~~~----~~~~~~~~~~~~~--~~v~~~~~~~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ...    .... +.....|.  .....+++-|-    +..++++=+.||.+.+|+-+.-..    ..+...---.-.+.|
T Consensus       108 ~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~~llPgPl~Y  182 (418)
T PF14727_consen  108 DGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPDFLLPGPLCY  182 (418)
T ss_pred             CCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCCCCCCcCeEE
Confidence            211    1111 22222232  23334444332    246778889999999998765221    111111111223455


Q ss_pred             cCCCCeEEEEEeCCCcEEEEEC
Q 014433          282 NPFNEWILATGSTDKTVKLFDL  303 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~  303 (424)
                      .+... .|++++.+..+..|..
T Consensus       183 ~~~tD-sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  183 CPRTD-SFVTASSSWTLECYKY  203 (418)
T ss_pred             eecCC-EEEEecCceeEEEecH
Confidence            55444 3556666666666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.43  E-value=3.1  Score=41.09  Aligned_cols=123  Identities=15%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEc--CCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWN--PKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .+.-+.-+..++ +.++-+....+.|||.+. +..-.... ...+.|..+.|.  |+++. +++.+....|.++--....
T Consensus        31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCc-EEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchh
Confidence            334444444454 333333445799999987 33222111 346789999996  67764 5566667778887543211


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .  ....+ ...+........|+ .+|.+..|.++|. +++.+  ++.+.|++-.-
T Consensus       108 y--~~~~p-~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  108 Y--TNKGP-SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             h--hcCCc-ccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCCc
Confidence            1  00000 01111112223443 5799999999998 44433  45688876543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.42  E-value=4.3  Score=37.87  Aligned_cols=198  Identities=14%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CC----CceeEEEecCCCCceEEEEe--C----CCcE
Q 014433          137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HS----TEGYGLSWSKFKEGHLLSGS--D----DAQI  203 (424)
Q Consensus       137 ~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~--~----dg~i  203 (424)
                      .+++++-|-.++.|+|+|+.+.+..+.      ....+..   +.    .....+---|+|. +++|+-  .    -|-+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf  159 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPR------LHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGF  159 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-E------EEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EE
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCc------eEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcE
Confidence            444555566889999999987544432      1122221   10    1112222335565 566542  2    2346


Q ss_pred             EEEeCCCCCCCCcccceeeeec---CCccEeeEEEecCCCcEEEEEe--------------------CCCeEEEEEcCCC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKV---HEGVVEDVAWHLRHEYLFGSVG--------------------DDQYLLIWDLRTP  260 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~--------------------~dg~i~i~d~~~~  260 (424)
                      .+.|-++..      ....+..   ....-.++.|.|..+.++ |..                    ...++.+||+.+.
T Consensus       160 ~llD~~tf~------v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  160 VLLDGETFE------VKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             EEE-TTT--------EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             EEEcCcccc------ccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            666665432      2222221   123456778888765443 432                    3468999999986


Q ss_pred             CCCCCeeeeeccCC--CeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCCC----CcceEecC-----------------
Q 014433          261 SVSKPVQSVVAHQS--EVNCLA--FNPFNEWILATGSTDKTVKLFDLRKIS----TALHTFDS-----------------  315 (424)
Q Consensus       261 ~~~~~~~~~~~~~~--~v~~v~--~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~-----------------  315 (424)
                      +.   ++++.-...  .+.-|.  .+|...+-++.+...++|..|--...+    +.+..+..                 
T Consensus       233 ~~---~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~  309 (461)
T PF05694_consen  233 KL---LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA  309 (461)
T ss_dssp             EE---EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred             cE---eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence            64   555543222  233444  456566555555555555555332111    11111111                 


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       316 h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      -..-|+.|..|.+.+.+.+++=.+|.|+.||+....
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            124579999999998777777789999999998754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.39  E-value=0.16  Score=30.12  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=27.1

Q ss_pred             CceeEEEecCCCC--cEEEEEeCCCeEEEEeCCC
Q 014433          126 GEVNRARYMPQNP--FLIATKTVSAEVYVFDYSK  157 (424)
Q Consensus       126 ~~v~~~~~~p~~~--~~latg~~dg~v~iw~~~~  157 (424)
                      ++|.+++|+|...  .+||..-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5789999998554  6888888889999999984

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.27  E-value=2.4  Score=37.92  Aligned_cols=159  Identities=14%  Similarity=0.105  Sum_probs=75.5

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .-.+.+..+..++++. ++|++..-....-|+-..        ..+.+  .-+.....|..+.|.|++.  |......|.
T Consensus       142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~--------~~w~~--~~r~~~~riq~~gf~~~~~--lw~~~~Gg~  208 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQ--------TTWQP--HNRNSSRRIQSMGFSPDGN--LWMLARGGQ  208 (302)
T ss_dssp             S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------SS-EE--EE--SSS-EEEEEE-TTS---EEEEETTTE
T ss_pred             CCcceeEeEEECCCCc-EEEEECcccEEEEecCCC--------ccceE--EccCccceehhceecCCCC--EEEEeCCcE
Confidence            3447788888899886 777765444445677543        11222  2223457899999999865  444458888


Q ss_pred             EEEEeCCCCCCCCccc-ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLE-AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      |+.=+.....  ..+. .+.......-.+.+++|.+.+. ++|+|+ .|.+ +.....++..+.......-...++.|.|
T Consensus       209 ~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f  283 (302)
T PF14870_consen  209 IQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVF  283 (302)
T ss_dssp             EEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred             EEEccCCCCc--cccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEE
Confidence            8887621110  1110 0111111233588999998864 665554 5543 4555555543222222233456888888


Q ss_pred             cCCCCeEEEEEeCCCcEEEE
Q 014433          282 NPFNEWILATGSTDKTVKLF  301 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iw  301 (424)
                      .+... -++.| .+|.|.-|
T Consensus       284 ~~~~~-gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  284 VNPDK-GFVLG-QDGVLLRY  301 (302)
T ss_dssp             EETTE-EEEE--STTEEEEE
T ss_pred             cCCCc-eEEEC-CCcEEEEe
Confidence            76544 46555 57776544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.25  E-value=1.4  Score=43.45  Aligned_cols=114  Identities=19%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec--CCCCeEEEEEeCCCcEEEEECC--
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN--PFNEWILATGSTDKTVKLFDLR--  304 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~tg~~dg~i~iwd~~--  304 (424)
                      .+.-+.-+..++ +.++-+....+.|||.+.+.. ..-..+ ...+.|..+.|.  |+++.+|++| ..+.|.+|...  
T Consensus        31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~  106 (631)
T PF12234_consen   31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRY  106 (631)
T ss_pred             CcceEeecccCc-EEEEECCCCEEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccch
Confidence            333444444443 323344456799999987652 111122 347789999885  6788656555 56788887542  


Q ss_pred             ---CC---CCcceEe--cCCC-CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          305 ---KI---STALHTF--DSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       305 ---~~---~~~~~~~--~~h~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                         +.   ..++..+  ..|+ .+|.+..|.++|.  |+.|+ ++.+.|+|-..
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKWL  157 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCCc
Confidence               11   1233333  2333 6899999999994  44444 44688887544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.23  E-value=0.75  Score=43.16  Aligned_cols=144  Identities=14%  Similarity=0.158  Sum_probs=89.9

Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCCcce
Q 014433          238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKISTALH  311 (424)
Q Consensus       238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~------~l~tg~~dg~i~iwd~~~~~~~~~  311 (424)
                      +...++..|+.-..++-.|+..++.   +.....|..-  -+.|.|...+      .-++|-.+..|.-.|.|-.+..+.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkv---veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKV---VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CcceEEecCCCcccceeeeccccee---eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            3444555666677788889888775   5555555443  6777775321      123566677777778886554443


Q ss_pred             EecCCCCCE-----EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433          312 TFDSHKEEV-----FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE  386 (424)
Q Consensus       312 ~~~~h~~~v-----~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  386 (424)
                      .... ...+     .+..-...|  ++|+++..|-|++||--....              ...+.+-...|..+..+.+|
T Consensus       553 v~es-KdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA--------------KtalP~lG~aIk~idvta~G  615 (776)
T COG5167         553 VVES-KDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA--------------KTALPGLGDAIKHIDVTANG  615 (776)
T ss_pred             eeee-hhccccccccccccccCc--eEEEecCCCceeeehhhcchh--------------hhcCcccccceeeeEeecCC
Confidence            3332 2222     233333334  799999999999999643221              22234445678899999999


Q ss_pred             CcEEEEEeCCCcEEEEecC
Q 014433          387 DWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       387 ~~~l~s~~~dg~i~vw~~~  405 (424)
                      .++|+||-  ..+.+-|+.
T Consensus       616 k~ilaTCk--~yllL~d~~  632 (776)
T COG5167         616 KHILATCK--NYLLLTDVP  632 (776)
T ss_pred             cEEEEeec--ceEEEEecc
Confidence            98777753  467776664

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.19  E-value=7.3  Score=39.60  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC---CCCCCCCCCCCcEEE--------ecCCCceeEEEecCCC--Cc
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---SKPPLDGACSPDLRL--------RGHSTEGYGLSWSKFK--EG  192 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~---~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~--~~  192 (424)
                      -.|..|.++|.|. ++|..|..| |.|-.+...-   .............++        ..+...|..+.|+|.+  ..
T Consensus        85 f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4788999999997 566656554 5555554311   111000000111111        1345678999999974  23


Q ss_pred             eEEEEeCCCcEEEEeCCCCC
Q 014433          193 HLLSGSDDAQICLWDINAAP  212 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~  212 (424)
                      .|+.=..|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            68888889999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.15  E-value=4.2  Score=36.71  Aligned_cols=244  Identities=12%  Similarity=0.051  Sum_probs=118.3

Q ss_pred             EEecCCCCcEEEE---------EeCCCeEEEEeCCCCCCCCCCCCCCCCcEE--EecC-C----CceeEEEecCCCCceE
Q 014433          131 ARYMPQNPFLIAT---------KTVSAEVYVFDYSKHPSKPPLDGACSPDLR--LRGH-S----TEGYGLSWSKFKEGHL  194 (424)
Q Consensus       131 ~~~~p~~~~~lat---------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~h-~----~~v~~l~~~~~~~~~l  194 (424)
                      +..+|+++.+.++         |-..-.|.+||..+          ..+...  +... .    .....++++.+++ ++
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T----------L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~  109 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT----------LSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FL  109 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT----------TEEEEEEEETTS-B--BS--GGGEEE-TTSS-EE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc----------CcccceEecCCcchheecccccceEEccCCc-EE
Confidence            5678888743332         22345899999988          222222  2211 1    1123345566665 33


Q ss_pred             EEE--eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee--eee
Q 014433          195 LSG--SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVV  270 (424)
Q Consensus       195 ~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~~  270 (424)
                      +..  +--.+|.|.|+...+.      +..+. -.+ +.  ..-|.++.-|.+.|.||.+.-..+..........  .+.
T Consensus       110 ~V~N~TPa~SVtVVDl~~~kv------v~ei~-~PG-C~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  110 YVQNFTPATSVTVVDLAAKKV------VGEID-TPG-CW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD  179 (342)
T ss_dssp             EEEEESSSEEEEEEETTTTEE------EEEEE-GTS-EE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred             EEEccCCCCeEEEEECCCCce------eeeec-CCC-EE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence            332  2244566677765422      22221 111 22  2224444456788999999999998543211000  111


Q ss_pred             ccCCCe-eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-cceEecCC----------CCCEEEEEEcCCCCcEEEEEEC
Q 014433          271 AHQSEV-NCLAFNPFNEWILATGSTDKTVKLFDLRKIST-ALHTFDSH----------KEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       271 ~~~~~v-~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~h----------~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      .-..++ ..-++...+.. ++--+..|.|+-.|+..... ....+..-          .+.-.-+++++....+++.-..
T Consensus       180 ~~~dp~f~~~~~~~~~~~-~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  180 PDDDPLFEHPAYSRDGGR-LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             TTTS-B-S--EEETTTTE-EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             CCCcccccccceECCCCe-EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence            111222 22233333443 33467889999999886321 11111110          1233446676654433332221


Q ss_pred             -------CC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE-eCCCcEEEEecCCcc
Q 014433          339 -------GR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV-AEDNILQIWQMAENI  408 (424)
Q Consensus       339 -------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~  408 (424)
                             |+  .|-++|+.+.              +.+..+.. ...+.++..+.+.+-+|++. ..++.|.+||..++.
T Consensus       259 g~~gsHKdpgteVWv~D~~t~--------------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKTH--------------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTTT--------------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CCCCCccCCceEEEEEECCCC--------------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence                   12  2555566554              33333331 22477899988766466554 568999999999986


Q ss_pred             CCC
Q 014433          409 YHD  411 (424)
Q Consensus       409 ~~~  411 (424)
                      +..
T Consensus       324 ~~~  326 (342)
T PF06433_consen  324 LVR  326 (342)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            644

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK10115 protease 2; Provisional

Probab=94.12  E-value=7.6  Score=39.53  Aligned_cols=203  Identities=10%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             ceeEEEecCCCCceEEEEeCCC----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-----C
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----Q  250 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g  250 (424)
                      .+..+.|+|++..+.++.+.+|    .|++.|+.++....     ..+.   ..-..++|.+++..++.+...+     .
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----cccc---CcceEEEEeeCCCEEEEEEecCCCCCCC
Confidence            4567889999884444433334    58888987663211     1111   1114589999988777665433     3


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCee-EEEecCCCCeEEEEEeC--CCcEEEEECCCC-CCcceEecCCCCCEEEEEEc
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGST--DKTVKLFDLRKI-STALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~-~~~~~~~~~h~~~v~~~~~s  326 (424)
                      .|+.+++.++.. .....+........ .+..+.+++++++....  ++.+.+++.... ..+...+.........+. +
T Consensus       200 ~v~~h~lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~  277 (686)
T PRK10115        200 QVWRHTIGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H  277 (686)
T ss_pred             EEEEEECCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence            677888887631 11222222223333 33334477765544443  357888885432 222222222222223332 3


Q ss_pred             CCCCcEEEEEEC-CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          327 PKNETILASCCL-GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       327 p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ..+ .+++.... ....+|..+.....         ...+.+.... ....|..+.+.  +.+++++...+|.-+++-+.
T Consensus       278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~-~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        278 YQH-RFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPR-ENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CCC-EEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCC-CCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence            223 33333332 22344443322100         0112222211 12357777776  44578888888877766554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.09  E-value=4.2  Score=36.44  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=74.0

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  253 (424)
                      ...-.+.+..+.-++++. ++++++......-||....    ...+  .-..-...|..|.|.|++. +.+ ....|.|+
T Consensus       140 ~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~----~w~~--~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~  210 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT----TWQP--HNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQ  210 (302)
T ss_dssp             E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S----S-EE--EE--SSS-EEEEEE-TTS--EEE-EETTTEEE
T ss_pred             ccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc----cceE--EccCccceehhceecCCCC-EEE-EeCCcEEE
Confidence            344557788888888887 6777666555567776432    1111  1122457899999999975 443 44888888


Q ss_pred             EEEcC-CCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCC
Q 014433          254 IWDLR-TPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPK  328 (424)
Q Consensus       254 i~d~~-~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~  328 (424)
                      .=+.. .... .+++.......-.+..++|.+.+. +.|+|+ .|.+ +..... ++.-+...   .-......+.|.+.
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDG-GKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESST-TSS-EE-GGGTTSSS---EEEEEET
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCC-CccceECccccCCCCceEEEEEcCC
Confidence            87721 1111 011111112233478999999876 566655 4543 233333 33333322   22446788888765


Q ss_pred             CCcEEEEEECCCeEEEe
Q 014433          329 NETILASCCLGRRLMVW  345 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iw  345 (424)
                      ..  -.+.+.+|.|.-|
T Consensus       287 ~~--gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 DK--GFVLGQDGVLLRY  301 (302)
T ss_dssp             TE--EEEE-STTEEEEE
T ss_pred             Cc--eEEECCCcEEEEe
Confidence            43  3345667766544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.09  E-value=0.008  Score=55.30  Aligned_cols=145  Identities=13%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      .......|-+.+.+ ++.++.+..+..||-......        -...++...+++|..+++.+++.+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~l--------e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVIL--------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEecCCCc-eehhhhhhHHHhhhhhcceec--------ccCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            34456778888876 777788888888986433111        112356677899999888887788889999999998


Q ss_pred             CCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      +... ..+..-..+....  +.|++-.+ .++.|...|.+.|+..+. .+.+.....|..++++++|.+.+.  .+.++.
T Consensus       106 ~eyt-qqLE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~--vil~dc  178 (615)
T KOG2247|consen  106 SEYT-QQLESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY--VILCDC  178 (615)
T ss_pred             hhhH-HHHhccCcchHHH--HhhccCCc-cccccccccceEEEeccc-hhhhhhhcccccceeEEEecccce--eeecCc
Confidence            7542 1121111122222  67888776 588888999999999887 444444445889999999999873  444544


Q ss_pred             C
Q 014433          339 G  339 (424)
Q Consensus       339 d  339 (424)
                      |
T Consensus       179 d  179 (615)
T KOG2247|consen  179 D  179 (615)
T ss_pred             H
Confidence            4

>PHA02790 Kelch-like protein; Provisional

Probab=93.97  E-value=3.4  Score=40.07  Aligned_cols=59  Identities=8%  Similarity=0.031  Sum_probs=30.1

Q ss_pred             CcEEEEEeCCC---eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014433          240 EYLFGSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK  305 (424)
Q Consensus       240 ~~~~~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~  305 (424)
                      ..+++.||.++   .+..||.++..- ..+..+.........+++   +..+.+.|+   .+.+||.++
T Consensus       363 g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        363 NVIYVIGGHSETDTTTEYLLPNHDQW-QFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CEEEEecCcCCCCccEEEEeCCCCEE-EeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCC
Confidence            46777887654   467888876541 111111111111222222   334677764   577888765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.25  E-value=8.7  Score=37.39  Aligned_cols=98  Identities=7%  Similarity=0.059  Sum_probs=55.3

Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEE-----------------EeCCCcEEEEECC
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT-----------------GSTDKTVKLFDLR  304 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~t-----------------g~~dg~i~iwd~~  304 (424)
                      +++.++.+|.+..+|.++++..-.....      ...++.+| +. +++.                 ...+|.+.-.|++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~  374 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK  374 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence            5667888999999999998752211110      11123333 21 2221                 1235678888887


Q ss_pred             CCCCcceEecCCC--------CCE--EEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          305 KISTALHTFDSHK--------EEV--FQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       305 ~~~~~~~~~~~h~--------~~v--~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      + ++.+-+.....        .+.  ..+..  .+ .+++.++.||.|+.+|..+++
T Consensus       375 t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         375 T-GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             C-CcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCc
Confidence            7 44444333210        111  11222  23 367788899999999998874

The alignment model contains an 8-bladed beta-propeller.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.98  E-value=7.8  Score=36.09  Aligned_cols=152  Identities=10%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             CceeEEEecCCCCcEEEEEe-----------CCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          126 GEVNRARYMPQNPFLIATKT-----------VSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~-----------~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      .....|+|.++|. ++++-.           ..+ .|.+++-....      +.......+...-....++++.+++  +
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd------G~~d~~~vfa~~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGD------GKYDKSNVFAEELSMVTGLAVAVGG--V   84 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC------CCcceeEEeecCCCCccceeEecCC--E
Confidence            4566789999887 444421           223 77777654311      1111222333334456889988765  3


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCC-ccc-ceeeeec----CCccEeeEEEecCCCcEEEEEeC------------------C
Q 014433          194 LLSGSDDAQICLWDINAAPKNK-SLE-AMQIFKV----HEGVVEDVAWHLRHEYLFGSVGD------------------D  249 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~------------------d  249 (424)
                      ++ ++.....++.|........ ..+ .+..+..    +......++|.|++...++.++.                  .
T Consensus        85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence            44 4444433344554322111 111 1111221    23457889999998644433321                  1


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEE
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg  292 (424)
                      |.|.-+|.....    +..+...-.....++|+|+|. ++++-
T Consensus       164 g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~-l~~td  201 (367)
T TIGR02604       164 GGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGD-VFFCD  201 (367)
T ss_pred             ceEEEEecCCCe----EEEEecCcCCCccceECCCCC-EEEEc
Confidence            345555554432    222222223356899999887 55553

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.87  E-value=5.2  Score=33.84  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEE--cCCCCCCCC--eeeeec---cCC-CeeEEEecCCCCeEEEEEeCCCcEEE
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWD--LRTPSVSKP--VQSVVA---HQS-EVNCLAFNPFNEWILATGSTDKTVKL  300 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d--~~~~~~~~~--~~~~~~---~~~-~v~~v~~~~~~~~~l~tg~~dg~i~i  300 (424)
                      --+.++|+.+.+.+..+-+.+-.|.-||  ..++....+  +..++.   ... ..-.++....|. +.++.-..++|..
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQK  237 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEE
Confidence            3467899988887877888888887787  555543222  222211   011 112234455565 6777778889999


Q ss_pred             EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433          301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       301 wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~  336 (424)
                      +|..+ ++.+.++......|++++|--..-.+|++.
T Consensus       238 ~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  238 VDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             ECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            99998 788999988899999999974322344433

>PHA02790 Kelch-like protein; Provisional

Probab=92.74  E-value=8.9  Score=37.20  Aligned_cols=63  Identities=13%  Similarity=0.117  Sum_probs=32.8

Q ss_pred             CCcEEEEEeCC--CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCC
Q 014433          239 HEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRK  305 (424)
Q Consensus       239 ~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~  305 (424)
                      +..+++.||.+  ..+..||..+.. ...+..+.........+..   +..+.+.|+.++   .+..||.++
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCe-EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCC
Confidence            34677788754  357788876543 1111111111111222222   334788888654   467788765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.67  E-value=1.8  Score=35.39  Aligned_cols=32  Identities=13%  Similarity=0.439  Sum_probs=26.9

Q ss_pred             CcceEEeCCC-----CCcEEEEEeCCCcEEEEecCCc
Q 014433          376 KISDFSWNPC-----EDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       376 ~v~~~~~~~~-----~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .|..++|+|.     ++.+|++...++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            6889999995     3568999999999999998743

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.55  E-value=6.8  Score=36.47  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             ccEeeEEEecCCCcEEEEEe-----------CCC-eEEEEEcCCCC-CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC
Q 014433          228 GVVEDVAWHLRHEYLFGSVG-----------DDQ-YLLIWDLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNEWILATGST  294 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~-----------~dg-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~  294 (424)
                      .....|+|.+++. ++++-.           ..+ .|.+++-..+. .......+...-...+.+++.+++  ++++ ..
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP   89 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence            3456788888886 443432           223 67666544322 111223333334456889998876  4554 33


Q ss_pred             CCcEEEEECCCCC----C--cc-eEecC----CCCCEEEEEEcCCCCcEEEEEE
Q 014433          295 DKTVKLFDLRKIS----T--AL-HTFDS----HKEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       295 dg~i~iwd~~~~~----~--~~-~~~~~----h~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      ....++.|.....    +  .+ ..+..    +......++|.|+|. +.++.+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            3333343443211    1  11 12222    234578899999996 444433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.49  E-value=7.2  Score=34.47  Aligned_cols=143  Identities=13%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-----  267 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-----  267 (424)
                      .|+.|..+| +.++++.....     .....  +...|..+...+.-+.+++-  .|+.++++++..-.......     
T Consensus         9 ~L~vGt~~G-l~~~~~~~~~~-----~~~i~--~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    9 RLLVGTEDG-LYVYDLSDPSK-----PTRIL--KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             EEEEEECCC-EEEEEecCCcc-----ceeEe--ecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccc
Confidence            688999888 89999832211     11111  23349999999877655533  35999999998644321100     


Q ss_pred             ------eeeccCCCeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCC---C-CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          268 ------SVVAHQSEVNCLA--FNPFNEWILATGSTDKTVKLFDLRKI---S-TALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       268 ------~~~~~~~~v~~v~--~~~~~~~~l~tg~~dg~i~iwd~~~~---~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                            ........+..++  -...+...|+++. ...|.+|.....   . ...+.+.. ...+..++|.++   .++.
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~---~i~v  153 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN---KICV  153 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC---EEEE
Confidence                  0111223344444  2233444455444 558998887652   1 34455554 478899999943   4666


Q ss_pred             EECCCeEEEeeCCCCC
Q 014433          336 CCLGRRLMVWDLSRID  351 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~  351 (424)
                      |..++ ..+.|+.++.
T Consensus       154 ~~~~~-f~~idl~~~~  168 (275)
T PF00780_consen  154 GTSKG-FYLIDLNTGS  168 (275)
T ss_pred             EeCCc-eEEEecCCCC
Confidence            66555 7888988654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.34  E-value=5.7  Score=32.99  Aligned_cols=197  Identities=14%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             cEEEEEEeccCCcee--EEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433          115 KVQIIQQINHDGEVN--RARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~--~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  190 (424)
                      ..+++++..|.....  .+.+. ++ +++.+.+.-  ..|++||+...          +......-....+.+=-...-+
T Consensus        33 ~~evi~~yphDs~sfTQGL~~~-~g-~i~esTG~yg~S~ir~~~L~~g----------q~~~s~~l~~~~~FgEGit~~g  100 (262)
T COG3823          33 VYEVIRTYPHDSTSFTQGLEYL-DG-HILESTGLYGFSKIRVSDLTTG----------QEIFSEKLAPDTVFGEGITKLG  100 (262)
T ss_pred             ceEEEEeccCchhhhhcceeee-CC-EEEEeccccccceeEEEeccCc----------eEEEEeecCCccccccceeecc
Confidence            346777788875433  33333 23 566665543  47999999862          1111111001111111111113


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      ..+.+-.-.+|.-..+|.++-+....      +. ..+.=+.++  .++.+++ .+....+++.-|.++-.....+... 
T Consensus       101 d~~y~LTw~egvaf~~d~~t~~~lg~------~~-y~GeGWgLt--~d~~~Li-msdGsatL~frdP~tfa~~~~v~VT-  169 (262)
T COG3823         101 DYFYQLTWKEGVAFKYDADTLEELGR------FS-YEGEGWGLT--SDDKNLI-MSDGSATLQFRDPKTFAELDTVQVT-  169 (262)
T ss_pred             ceEEEEEeccceeEEEChHHhhhhcc------cc-cCCcceeee--cCCcceE-eeCCceEEEecCHHHhhhcceEEEE-
Confidence            32334455678888888876543222      21 234445555  3455565 4444556666666553332222211 


Q ss_pred             ccCCC---eeEEEecCCCCeEEEEEeCCCcEEEE-----------ECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433          271 AHQSE---VNCLAFNPFNEWILATGSTDKTVKLF-----------DLRKISTALHTFDSHKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       271 ~~~~~---v~~v~~~~~~~~~l~tg~~dg~i~iw-----------d~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~  336 (424)
                      ....+   ++-+.|- +|. +.|-.-.+..|...           |+......+..-..|..-.+.+++.|++..++++|
T Consensus       170 ~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         170 DDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ECCeecccccceeee-ccE-EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            11112   2223332 132 33333333333333           43332222222233455678899999987778776

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.17  E-value=8  Score=34.27  Aligned_cols=216  Identities=13%  Similarity=0.113  Sum_probs=115.7

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecCCC-----------
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFK-----------  190 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~-----------  190 (424)
                      .-..|+++|.+. +-++....+...+||........   ........+..     .....+.+.|+...           
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g---~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~   99 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPL---VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG   99 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccC---CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence            346799999886 56666678899999987321110   00111222221     22356777776432           


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccE-eeEEEe--cCCCcEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVV-EDVAWH--LRHEYLFGSVGDDQYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~--~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~  266 (424)
                      ...++.+++||+|.-|...-....-. .....+. .....| ..+++.  ..+..|+++--..++|.|||-.-.....+ 
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-  177 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMT-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-  177 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCccccc-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence            12367789999999998654322000 0011111 112223 334443  33567777777889999998654321100 


Q ss_pred             eee-----eccCCC-----------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCC
Q 014433          267 QSV-----VAHQSE-----------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPK  328 (424)
Q Consensus       267 ~~~-----~~~~~~-----------v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~  328 (424)
                      ..+     .+.-.+           |+-..-.+... -=+.|..-|.|-+||+.  +..++++..  .-..-+.|+..|-
T Consensus       178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChh
Confidence            000     000001           11111112111 12223344789999987  567776642  2234566777652


Q ss_pred             -----CCcEEEEEECCCeEEEeeCCCCC
Q 014433          329 -----NETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       329 -----~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                           ...+|+.--.||+|..||..++.
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence                 22477777779999999998764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.03  E-value=11  Score=35.55  Aligned_cols=156  Identities=10%  Similarity=0.154  Sum_probs=89.7

Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec---C-CCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---R-HEYLFGSVGDDQYLLIWDLRTPSVS  263 (424)
Q Consensus       188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~~~~s~~~dg~i~i~d~~~~~~~  263 (424)
                      +++...|++||..|.++||+......... ..+-. ..-..+|..+..-+   . ....+ +.-.-..+.||.+......
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE-~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLE-TQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCc-cEEEE-EecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCC
Confidence            44555799999999999999965432211 11111 12356777776543   2 23344 4456788888988432211


Q ss_pred             ------CCeeeeeccC--CCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          264 ------KPVQSVVAHQ--SEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       264 ------~~~~~~~~~~--~~v~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                            ..+.....|.  .....+++-|.    +..++++=+.||.+.+|+-+..  ....+-..---...+.+.+..+ 
T Consensus       111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~tD-  187 (418)
T PF14727_consen  111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPRTD-  187 (418)
T ss_pred             cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeecCC-
Confidence                  1122222232  23344444332    2457888999999999997651  1112111122223467777775 


Q ss_pred             EEEEEECCCeEEEeeCCC
Q 014433          332 ILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~  349 (424)
                      .|++++.+..+.-|....
T Consensus       188 sfvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQD  205 (418)
T ss_pred             EEEEecCceeEEEecHHH
Confidence            577888888888887654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.97  E-value=2.3  Score=40.17  Aligned_cols=87  Identities=21%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC-------CCCCeeeEEEcCCCCCcceEEeCCCC--CcE
Q 014433          319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE-------DGPPELLFIHGGHTSKISDFSWNPCE--DWV  389 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~  389 (424)
                      .|..+..++.|. .++-.+.+|.+.++=.+..+....+.+..       -+-...+++... .-.+..++|+|+.  .-.
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCce
Confidence            578888999996 67777788855444323332222111110       000112222222 2247789999986  223


Q ss_pred             EEEEeCCCcEEEEecCCc
Q 014433          390 ISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       390 l~s~~~dg~i~vw~~~~~  407 (424)
                      +..-..|+.+++|+++..
T Consensus       183 L~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEEecCcEEEEEecCCc
Confidence            444567999999999864

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.56  E-value=9.7  Score=34.00  Aligned_cols=182  Identities=10%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-----CcEEEEEeCCCeEEEEEcCCCCCCCCeee--------
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTPSVSKPVQS--------  268 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~--------  268 (424)
                      .|.+||+.+++....+..........+.++++.+....     .+.+++=+..+.|.|+|+.+++..+....        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            34555655553322222111122245678888887633     34555666667899999998653111000        


Q ss_pred             --e------eccCCCeeEEEecC---CCCeEEEEEeCCCcEEEEE---CCCCCC--------cceEecCCCCCEEEEEEc
Q 014433          269 --V------VAHQSEVNCLAFNP---FNEWILATGSTDKTVKLFD---LRKIST--------ALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       269 --~------~~~~~~v~~v~~~~---~~~~~l~tg~~dg~i~iwd---~~~~~~--------~~~~~~~h~~~v~~~~~s  326 (424)
                        +      ......+..++.+|   +++.+....-....++--.   +++...        .+..+.........++.+
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence              0      01122356666654   4543333322222222222   122110        112221112466788999


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC--CCCcEEEEE
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP--CEDWVISSV  393 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~  393 (424)
                      ++| .++++--..+.|..|+....-....        ...+..-...-..+.++++.+  ++. |.+.+
T Consensus       195 ~~G-~ly~~~~~~~aI~~w~~~~~~~~~~--------~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s  253 (287)
T PF03022_consen  195 PNG-NLYFTDVEQNAIGCWDPDGPYTPEN--------FEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS  253 (287)
T ss_dssp             TTT-EEEEEECCCTEEEEEETTTSB-GCC--------EEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred             CCC-cEEEecCCCCeEEEEeCCCCcCccc--------hheeEEcCceeeccceeeeccccCce-EEEEE
Confidence            988 4777888888999999876221110        122322222235677888888  776 45544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.51  E-value=8.8  Score=33.42  Aligned_cols=197  Identities=13%  Similarity=0.153  Sum_probs=105.2

Q ss_pred             cEEEEEEeccCC--ceeEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC
Q 014433          115 KVQIIQQINHDG--EVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK  190 (424)
Q Consensus       115 ~~~~~~~~~h~~--~v~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  190 (424)
                      .+++++.++|..  -...+.|..++. ++-+.+.-|  .|+.+|+.+        ++......+. ..--.-+++..  +
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~t--------g~~~~~~~l~-~~~FgEGit~~--~   99 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLET--------GKVLQSVPLP-PRYFGEGITIL--G   99 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTT--------SSEEEEEE-T-TT--EEEEEEE--T
T ss_pred             eeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCC--------CcEEEEEECC-ccccceeEEEE--C
Confidence            467888888875  455688866664 666666655  788888877        1111111121 11122334443  2


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      ..+....-.++...+||.++-      +.+..+. ..+.=+.++  .++..++.| .....|+++|..+-+....+.. .
T Consensus       100 d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V-~  168 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQV-T  168 (264)
T ss_dssp             TEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE--E
T ss_pred             CEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEE-E
Confidence            335556677889999999754      3344443 345566776  456667644 4466789999876443222211 1


Q ss_pred             ccC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---------------CCCCCEEEEEEcCCCCcE
Q 014433          271 AHQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---------------SHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       271 ~~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---------------~h~~~v~~~~~sp~~~~~  332 (424)
                      ...   ..++-+.|- +| .+.|-.=....|...|..+ +..+..+.               ....-.+.||+.|..+.+
T Consensus       169 ~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l  245 (264)
T PF05096_consen  169 DNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL  245 (264)
T ss_dssp             ETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred             ECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence            112   234455554 23 3555555555666666666 44433321               113457999999998888


Q ss_pred             EEEEE
Q 014433          333 LASCC  337 (424)
Q Consensus       333 l~s~~  337 (424)
                      ++||-
T Consensus       246 ~vTGK  250 (264)
T PF05096_consen  246 FVTGK  250 (264)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            88873

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.50  E-value=11  Score=32.82  Aligned_cols=203  Identities=8%  Similarity=0.020  Sum_probs=109.0

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .-..++-.|+|. .-+++...|.|--.|..+++.      ...--+....-..|..-|++..-| +-+.. .|.-.|-++
T Consensus        63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt  133 (353)
T COG4257          63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKT  133 (353)
T ss_pred             CccccccCCCCc-eEEecCccccceecCCCCCce------EEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcc
Confidence            345677778776 677777777777777776632      111122344556677788876444 32222 455566655


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-CCCEEEEEEcCCCCcEEEEEEC
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      .....................|++.|. +-.++. .|.---.|..  ...+..+... ...-..|+-.|+|+ +.++.-.
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla  208 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLA  208 (353)
T ss_pred             cceEEeecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence            442111111122345678889999887 666765 2221111111  2233444332 33567889999996 5556555


Q ss_pred             CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +..|-..|......            +.+-...+.......+--+|.++ +-+|....+.+..+|.+....
T Consensus       209 gnaiaridp~~~~a------------ev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW  266 (353)
T COG4257         209 GNAIARIDPFAGHA------------EVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSW  266 (353)
T ss_pred             ccceEEcccccCCc------------ceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccc
Confidence            66666666655422            11111111112233444456666 556666666777777665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.44  E-value=5.1  Score=36.65  Aligned_cols=111  Identities=14%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecC---CCcEEEEEeCC------
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLR---HEYLFGSVGDD------  249 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~~s~~~d------  249 (424)
                      ..++|+|.|++.  ++++...|.|++++.. +.....+..+ ............++++|+   +..++++.+..      
T Consensus         3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    3 NPRSMAFLPDGR--LLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SEEEEEEETTSC--EEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CceEEEEeCCCc--EEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence            357899999875  5556779999999932 2211111111 112234567899999994   34565555422      


Q ss_pred             --CeEEEEEcCCCCC-C---CCe-eeeec---cCCCeeEEEecCCCCeEEEEEeC
Q 014433          250 --QYLLIWDLRTPSV-S---KPV-QSVVA---HQSEVNCLAFNPFNEWILATGST  294 (424)
Q Consensus       250 --g~i~i~d~~~~~~-~---~~~-~~~~~---~~~~v~~v~~~~~~~~~l~tg~~  294 (424)
                        ..|.-|....... .   +.+ .....   .......|+|.|++. |.++.+.
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~  133 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence              2344444433210 0   011 11111   234567799999996 5555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.38  E-value=6.3  Score=37.45  Aligned_cols=77  Identities=18%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--------Ccce---E-------ec-CCCCCEEEEEEcCCC--CcEE
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--------TALH---T-------FD-SHKEEVFQVGWNPKN--ETIL  333 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--------~~~~---~-------~~-~h~~~v~~~~~sp~~--~~~l  333 (424)
                      .|..+..++.|+ .++-.+.+|.+.++=.+..+        ++..   +       |. ...-.+..++|+|+.  +..|
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            467778888888 46666667765554322211        1110   0       11 112356789999987  5567


Q ss_pred             EEEECCCeEEEeeCCCCCc
Q 014433          334 ASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~  352 (424)
                      ..-+.|..|+||++....+
T Consensus       184 ~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEecCcEEEEEecCCcch
Confidence            7888899999999987654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.37  E-value=10  Score=32.18  Aligned_cols=138  Identities=14%  Similarity=0.112  Sum_probs=78.8

Q ss_pred             CccEeeEEEecCCCcEEEEEeC--------CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGD--------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~--------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      ....++-..+|+|++...+-+.        .|.++.|-....     +..+...-..-+.++|+.+.+.+..+-+.+-+|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence            3466777788999863222111        234444433221     122222233456789998887777777777788


Q ss_pred             EEEECC--CC----CCcceEecC----CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeE
Q 014433          299 KLFDLR--KI----STALHTFDS----HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF  368 (424)
Q Consensus       299 ~iwd~~--~~----~~~~~~~~~----h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  368 (424)
                      .-||..  +.    .+.+..++.    ..-..-.++....| .+.+++-..++|...|..++              .++.
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tG--------------K~L~  247 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTG--------------KILL  247 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCC--------------cEEE
Confidence            778733  21    111222221    01112234445566 47777888889999999886              4444


Q ss_pred             EEcCCCCCcceEEeCC
Q 014433          369 IHGGHTSKISDFSWNP  384 (424)
Q Consensus       369 ~~~~h~~~v~~~~~~~  384 (424)
                      .+.-....|++++|--
T Consensus       248 eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  248 EIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEcCCCceEEEEecC
Confidence            4444567799999963

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.29  E-value=23  Score=36.14  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=50.8

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCC-C------CCcccceee------e-ecCCccEeeEEEecCC--Cc
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP-K------NKSLEAMQI------F-KVHEGVVEDVAWHLRH--EY  241 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~------~~~~~~~~~------~-~~~~~~v~~~~~~~~~--~~  241 (424)
                      ...|..|..+|.|. +|+..+..|.+.+.=.+... .      ...+.+...      + ..+...|..+.|+|.+  ..
T Consensus        84 ~f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34788999999998 57777765544433222110 0      011111100      1 1244688999999974  23


Q ss_pred             EEEEEeCCCeEEEEEcCCCCC
Q 014433          242 LFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      .|++-..|+++++||+.....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCC
Confidence            445778899999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.18  E-value=1.7  Score=25.06  Aligned_cols=31  Identities=10%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECC--CeEEEe
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLG--RRLMVW  345 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iw  345 (424)
                      .....-....|+|+|+.++.++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678899999999888888877  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.13  E-value=0.035  Score=51.29  Aligned_cols=147  Identities=10%  Similarity=0.136  Sum_probs=97.2

Q ss_pred             cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014433          229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST  308 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~  308 (424)
                      ..-...|-+.+.++ +.++.+..+..||-.....    .. ...++....++|+.++..+++.+-..+.+.+||+.+.. 
T Consensus        36 ~pi~~~w~~e~~nl-avaca~tiv~~YD~agq~~----le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-  108 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNL-AVACANTIVIYYDKAGQVI----LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-  108 (615)
T ss_pred             ccceeeEecCCCce-ehhhhhhHHHhhhhhccee----cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-
Confidence            33455678887775 4777788888898765332    11 12345567788988888777778888999999998632 


Q ss_pred             cceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          309 ALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       309 ~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                       ...+.. -...-.-+.|++..+ .++.+...|.+.|++....              +.+.....|...++.++|.+.+.
T Consensus       109 -tqqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts--------------R~iiv~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  109 -TQQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS--------------RRIIVMGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             -HHHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch--------------hhhhhhcccccceeEEEecccce
Confidence             222221 112222378998876 5778888899999998764              22333344888899999999876


Q ss_pred             cEEEEEeCCCcEE
Q 014433          388 WVISSVAEDNILQ  400 (424)
Q Consensus       388 ~~l~s~~~dg~i~  400 (424)
                        .+.++.|..+.
T Consensus       173 --vil~dcd~~L~  183 (615)
T KOG2247|consen  173 --VILCDCDNTLS  183 (615)
T ss_pred             --eeecCcHHHHH
Confidence              44445555443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.89  E-value=12  Score=39.85  Aligned_cols=38  Identities=11%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK  157 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~  157 (424)
                      ..+.+.+.....++|.|... ++|.|..+|.|++|-...
T Consensus        29 ~~~~G~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   29 TNRHGFPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             ceecCCCCCCcceeeccccc-eEEEEEecccEEEecccc
Confidence            33445556777899999764 999999999999998765

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.82  E-value=1.7  Score=25.09  Aligned_cols=29  Identities=10%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             CCCcceEEeCCCCCcEEEEEeCC--CcEEEE
Q 014433          374 TSKISDFSWNPCEDWVISSVAED--NILQIW  402 (424)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~~~d--g~i~vw  402 (424)
                      ...-....|+|+|++++.++..+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567789999999888888888  877777

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=89.66  E-value=16  Score=33.44  Aligned_cols=156  Identities=15%  Similarity=0.085  Sum_probs=80.9

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      .+.++++.+.|++. ++++| ..|.+..- +-..        ..+...  ...-...++++.+.+++. .+++ +..|.+
T Consensus       172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg--------~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~  237 (334)
T PRK13684        172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQ--------TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQI  237 (334)
T ss_pred             cceEEEEEECCCCe-EEEEe-CCceEEEEcCCCC--------CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEE
Confidence            45688899998764 56554 45655432 2111        012111  122345788999999776 4444 456766


Q ss_pred             EEEeCCCCCCCCcccceeee-ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      .+=..+.+.   .......- ......+.++.+.+++. ++ .++.+|.+. .....++....+.....-....+.+.|.
T Consensus       238 ~~~s~d~G~---sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~  311 (334)
T PRK13684        238 RFNDPDDLE---SWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL  311 (334)
T ss_pred             EEccCCCCC---ccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence            532233221   11111100 01123578888988764 55 455677664 3444444322221111223457778877


Q ss_pred             CCCCeEEEEEeCCCcEEEEE
Q 014433          283 PFNEWILATGSTDKTVKLFD  302 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd  302 (424)
                      ..+. .+++ +..|.|.-|+
T Consensus       312 ~~~~-~~~~-G~~G~il~~~  329 (334)
T PRK13684        312 DPEK-GFVL-GQRGVLLRYV  329 (334)
T ss_pred             CCCc-eEEE-CCCceEEEec
Confidence            6565 4554 5678887765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.59  E-value=4.4  Score=33.04  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             ceeEEEecCCC-----CceEEEEeCCCcEEEEeCCC
Q 014433          180 EGYGLSWSKFK-----EGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       180 ~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~  210 (424)
                      .+.+++|||.|     ..+|++...+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999964     33688899999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.42  E-value=18  Score=33.53  Aligned_cols=152  Identities=13%  Similarity=0.085  Sum_probs=73.7

Q ss_pred             EEecCCCCceEEEEeCCCc--EEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          184 LSWSKFKEGHLLSGSDDAQ--ICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      =+|.++|..+|+++..||.  +.+.|+.++.       +..+.... .......++++++.++. ......|+-.|+++.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPDDRALYY-VKNGRSLRRVDLDTL  112 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecCCCeEEE-EECCCeEEEEECCcC
Confidence            3577888877777777775  4555665542       22222222 22335667788876653 445578999999986


Q ss_pred             CCCCCeeeeeccCCCeeEEEe--cCCCCeEEEEEeC-----------------------CCcEEEEECCCCCCcceEecC
Q 014433          261 SVSKPVQSVVAHQSEVNCLAF--NPFNEWILATGST-----------------------DKTVKLFDLRKISTALHTFDS  315 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~tg~~-----------------------dg~i~iwd~~~~~~~~~~~~~  315 (424)
                      +.   ...+......+-...|  +.++.. + +|..                       ...|.-.|+++ ++.. .+..
T Consensus       113 e~---~~vy~~p~~~~g~gt~v~n~d~t~-~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-G~~~-~v~~  185 (386)
T PF14583_consen  113 EE---RVVYEVPDDWKGYGTWVANSDCTK-L-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-GERK-VVFE  185 (386)
T ss_dssp             -E---EEEEE--TTEEEEEEEEE-TTSSE-E-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EE-EEEE
T ss_pred             cE---EEEEECCcccccccceeeCCCccE-E-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-Ccee-EEEe
Confidence            63   2223333444434444  333442 2 2211                       12344456655 3332 2222


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEEC---CCe-EEEeeCCCC
Q 014433          316 HKEEVFQVGWNPKNETILASCCL---GRR-LMVWDLSRI  350 (424)
Q Consensus       316 h~~~v~~~~~sp~~~~~l~s~~~---dg~-i~iwd~~~~  350 (424)
                      -...+.-+.|+|..+.+|+-|-.   +.. -+||-++..
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence            35678899999998887777654   221 367766643

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.98  E-value=8.8  Score=29.46  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----CCceEEEEeCCCcEE
Q 014433          129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQIC  204 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~  204 (424)
                      ..-+|....+ .|++++..|.|.|++..........  ....+ .+-.-...|++|+--+-    +...|+.|+. ..+.
T Consensus         2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt~-t~ll   76 (136)
T PF14781_consen    2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR--QDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLL   76 (136)
T ss_pred             eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc--ccCce-eEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEE
Confidence            3456777677 5777888999999998763222210  11222 33346677888865442    3345666665 6889


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecC---CCcEEEEEeCCCeEEEEEcCC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .||+.......       ++.-.+.|+++.+-.-   ...++ ..+.+..|.-||...
T Consensus        77 aYDV~~N~d~F-------yke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   77 AYDVENNSDLF-------YKEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEG  126 (136)
T ss_pred             EEEcccCchhh-------hhhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCC
Confidence            99998764311       2223466777766322   12233 344456666666544

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.74  E-value=4.4  Score=37.72  Aligned_cols=161  Identities=16%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCC----Cee-EEEecCCCCeEEEEEeCCCc
Q 014433          224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQS----EVN-CLAFNPFNEWILATGSTDKT  297 (424)
Q Consensus       224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~----~v~-~v~~~~~~~~~l~tg~~dg~  297 (424)
                      ......|..+-..|+++.+.+-.+  ..+.++++.+....  ...+ ....+    .|+ ++..-. |..-+.+++.||-
T Consensus       217 ~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~--~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~  291 (733)
T COG4590         217 SVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQ--IRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL  291 (733)
T ss_pred             CCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccc--hhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc
Confidence            334567788889999987764433  67888888764421  1111 11111    122 111112 3335777888888


Q ss_pred             EEEE-ECCCCCCc----ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC
Q 014433          298 VKLF-DLRKISTA----LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG  372 (424)
Q Consensus       298 i~iw-d~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (424)
                      |.-| |.|..+.+    ++.++....++.-+.-..+. .-+++-...|++.++.....+             .+++..  
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~-------------~lL~~~--  355 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEK-------------LLLFER--  355 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCc-------------ceehhh--
Confidence            7765 77764433    11222222333333222222 346677777777776544321             122211  


Q ss_pred             CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          373 HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       373 h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      --..+.-++++|.+.+ +++ -..|.++++.+++.
T Consensus       356 ~~~~~~~~~~Sp~~~~-Ll~-e~~gki~~~~l~Nr  388 (733)
T COG4590         356 AYQAPQLVAMSPNQAY-LLS-EDQGKIRLAQLENR  388 (733)
T ss_pred             hhcCcceeeeCcccch-hee-ecCCceEEEEecCC
Confidence            1224667899999986 444 34677999988765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.62  E-value=26  Score=34.46  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCCCCCeeeeeccC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcc
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTAL  310 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~  310 (424)
                      .|.-.|+++++..-..+. ..|.       ....-+....+|+  .+++.+..+|.++++|.++ ++++
T Consensus       272 s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t-G~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN-GKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC-Ccee
Confidence            577778888774221111 1121       1112222323454  5788999999999999987 5553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.21  E-value=35  Score=35.41  Aligned_cols=156  Identities=12%  Similarity=0.108  Sum_probs=99.0

Q ss_pred             ceeEEEecCCCCceEEEEe----------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          180 EGYGLSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                      .+.++.|..+...++++|.          ..|.|.++.+...   ..++.+.... -.+.+.++..-  +..++  ++-+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---~~L~~v~e~~-v~Gav~aL~~f--ngkll--A~In  847 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---NSLELVAETV-VKGAVYALVEF--NGKLL--AGIN  847 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---Cceeeeeeee-eccceeehhhh--CCeEE--EecC
Confidence            3555668777455677764          2578888887763   2222222222 23455555433  23354  3456


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc--eEecCCCCCEEEEEEcC
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL--HTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~~h~~~v~~~~~sp  327 (424)
                      ..|++|+..+.+.   ++.-..+..++..+...-.+. .+++|..-+++.+.-.+......  .....+...++++.+-.
T Consensus       848 ~~vrLye~t~~~e---Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~  923 (1096)
T KOG1897|consen  848 QSVRLYEWTTERE---LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD  923 (1096)
T ss_pred             cEEEEEEccccce---ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence            7899999988643   444456778888888888787 58899988888887766533222  22235677888888877


Q ss_pred             CCCcEEEEEECCCeEEEeeCCC
Q 014433          328 KNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      +.  .++.+..+|.+.+-...+
T Consensus       924 ~d--~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  924 DD--TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             Cc--eEEeecccccEEEEEecC
Confidence            65  355666778787776654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.86  E-value=8.9  Score=40.71  Aligned_cols=156  Identities=11%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE--------ecCCCCeEEEEEeCCCcEEEEECCCCC--Cc-----
Q 014433          245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA--------FNPFNEWILATGSTDKTVKLFDLRKIS--TA-----  309 (424)
Q Consensus       245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~-----  309 (424)
                      -.+.|..+.+|+..++..   ...+.+-...|..|.        |.|.=+++|+.+.. -.|.++-+....  ..     
T Consensus        94 WiTiDn~L~lWny~~~~e---~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~  169 (1311)
T KOG1900|consen   94 WITIDNNLFLWNYESDNE---LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFN  169 (1311)
T ss_pred             EEEeCCeEEEEEcCCCCc---cccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccc
Confidence            345789999999998554   344444444555543        33334455555543 345555432110  01     


Q ss_pred             -ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc-------CCCC----cCCCCCeeeEEEcCCCCCc
Q 014433          310 -LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-------TPED----AEDGPPELLFIHGGHTSKI  377 (424)
Q Consensus       310 -~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~----~~~~~~~~~~~~~~h~~~v  377 (424)
                       ..++...+..|+++....+|+ ++.+| .||  .||.+.-.....       ....    ...--+.++.....+..+|
T Consensus       170 ~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI  245 (1311)
T KOG1900|consen  170 TSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI  245 (1311)
T ss_pred             cceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence             122223356789999778885 56554 555  556553221110       0000    0000112222224677799


Q ss_pred             ceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          378 SDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ..+....... ++.+-++.|+|++|++..+..
T Consensus       246 ~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G~  276 (1311)
T KOG1900|consen  246 RQITIDNSRN-ILYVLSEKGTVSAYDIGGNGL  276 (1311)
T ss_pred             eeeEeccccc-eeeeeccCceEEEEEccCCCc
Confidence            9999987766 899999999999999988543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.68  E-value=7.8  Score=41.09  Aligned_cols=142  Identities=15%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEE--------EecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe---
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA--------WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV---  266 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~---  266 (424)
                      +.|..+.+|+.+++....      .+.+-...|..+.        |-|.=+++++.+ .--.|.++-+.-.......   
T Consensus        96 TiDn~L~lWny~~~~e~~------~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELA------EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             EeCCeEEEEEcCCCCccc------cccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccc
Confidence            457889999999854322      1222233333332        223334455333 3345555544322111001   


Q ss_pred             ---eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----------C-------------CcceEec-CCCCC
Q 014433          267 ---QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----------S-------------TALHTFD-SHKEE  319 (424)
Q Consensus       267 ---~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~----------~-------------~~~~~~~-~h~~~  319 (424)
                         ..+......|+|+....+|+ +|.+| .||  .+|.+.-.          .             ..+..+. .+..+
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence               11223356789999777776 56555 566  45543210          0             0122233 56779


Q ss_pred             EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          320 VFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |..++..... .++.+-+..|+|.+|++....
T Consensus       245 I~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  245 IRQITIDNSR-NILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             ceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence            9999998766 589999999999999998743

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.61  E-value=2.5  Score=24.63  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDS  315 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  315 (424)
                      |++++++++...+++|.++|..+ ...+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence            56777777777789999999976 555555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.33  E-value=40  Score=35.05  Aligned_cols=142  Identities=12%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             CCeEEEEEcCCCCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s  326 (424)
                      .|.|.||.....+.   +.....+  ++.+.++.-  .+..++|  +-...|++|++.+ .+.++.-..|..++..+...
T Consensus       806 ~GRIivfe~~e~~~---L~~v~e~~v~Gav~aL~~--fngkllA--~In~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~  877 (1096)
T KOG1897|consen  806 NGRIIVFEFEELNS---LELVAETVVKGAVYALVE--FNGKLLA--GINQSVRLYEWTT-ERELRIECNISNPIIALDLQ  877 (1096)
T ss_pred             cceEEEEEEecCCc---eeeeeeeeeccceeehhh--hCCeEEE--ecCcEEEEEEccc-cceehhhhcccCCeEEEEEE
Confidence            45666666655222   2222122  334444432  2332343  3467899999987 55667777788899999998


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee-EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL-FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      -.++ .++.|..-+++.+-..+....            ... ..-.-+..+++.+.+-.+..  ++.+-.+|.+.+-...
T Consensus       878 v~gd-eI~VgDlm~Sitll~y~~~eg------------~f~evArD~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  878 VKGD-EIAVGDLMRSITLLQYKGDEG------------NFEEVARDYNPNWMTAVEILDDDT--YLGAENSGNLFTVRKD  942 (1096)
T ss_pred             ecCc-EEEEeeccceEEEEEEeccCC------------ceEEeehhhCccceeeEEEecCce--EEeecccccEEEEEec
Confidence            8886 688888877777766554321            111 11223556777888776665  3344567778777776


Q ss_pred             CccCCCCC
Q 014433          406 ENIYHDED  413 (424)
Q Consensus       406 ~~~~~~~~  413 (424)
                      +..-.+++
T Consensus       943 ~~~~td~e  950 (1096)
T KOG1897|consen  943 SDATTDEE  950 (1096)
T ss_pred             CCCCchhh
Confidence            55444333

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.28  E-value=41  Score=35.21  Aligned_cols=139  Identities=10%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEc
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWN  326 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~s  326 (424)
                      +|.++.|++-....  .+.-+....-+-.-.+.+|...++| +| ....+++||+-+ +++++....  -...|+++.+.
T Consensus       911 ~g~~ytyk~~~~g~--~lellh~T~~~~~v~Ai~~f~~~~L-ag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~  985 (1205)
T KOG1898|consen  911 SGFVYTYKFVRNGD--KLELLHKTEIPGPVGAICPFQGRVL-AG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTY  985 (1205)
T ss_pred             CCceEEEEEEecCc--eeeeeeccCCCccceEEeccCCEEE-Ee-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEeec
Confidence            45577776644332  1222211122222345567676544 33 356899999987 555444332  24567888876


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee-EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL-FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      -.   .++.|..-..+.++..+....            +++ +.-..-...|+.+.+-..+.  ++.+..=|.+.+-++.
T Consensus       986 ~~---RI~VgD~qeSV~~~~y~~~~n------------~l~~fadD~~pR~Vt~~~~lD~~t--vagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  986 GA---RIVVGDIQESVHFVRYRREDN------------QLIVFADDPVPRHVTALELLDYDT--VAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             ce---EEEEeeccceEEEEEEecCCC------------eEEEEeCCCccceeeEEEEecCCc--eeeccccCcEEEEECC
Confidence            43   355555444466555544221            222 22222234567666655554  6666777777777776


Q ss_pred             CccC
Q 014433          406 ENIY  409 (424)
Q Consensus       406 ~~~~  409 (424)
                      ....
T Consensus      1049 ~d~~ 1052 (1205)
T KOG1898|consen 1049 PDVS 1052 (1205)
T ss_pred             Ccch
Confidence            5543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.87  E-value=42  Score=34.86  Aligned_cols=172  Identities=10%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             cCCCceeEEEec---CC--CCceEEEEeCCCcEEEEeCCCCCC-------C--Ccccceeeee---cCCccEeeEEEecC
Q 014433          176 GHSTEGYGLSWS---KF--KEGHLLSGSDDAQICLWDINAAPK-------N--KSLEAMQIFK---VHEGVVEDVAWHLR  238 (424)
Q Consensus       176 ~h~~~v~~l~~~---~~--~~~~l~s~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~~---~~~~~v~~~~~~~~  238 (424)
                      .-..+|..|+|.   ..  ....++..-....+.|+...-...       .  -...++..+.   ....+..+++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            466789999987   21  121244445556777887322211       0  1112222222   12357889999998


Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCC--CCCCeeeeeccC----------CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433          239 HEYLFGSVGDDQYLLIWDLRTPS--VSKPVQSVVAHQ----------SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI  306 (424)
Q Consensus       239 ~~~~~~s~~~dg~i~i~d~~~~~--~~~~~~~~~~~~----------~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  306 (424)
                      ....||.....|...|||+....  ....+.....+.          +.-..|.|.++...+| ..+ ...+.++|+.+.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence            88889999999999999992111  111111111111          2234778877766544 433 467999999874


Q ss_pred             CCcc-eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          307 STAL-HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       307 ~~~~-~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      ...- .........|..+.-+|.....++.-. ...|...++...
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence            3311 122234568999999887433232222 245777777763

These proteins are found in fungi.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.63  E-value=18  Score=30.39  Aligned_cols=107  Identities=13%  Similarity=0.148  Sum_probs=61.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---C---cEEEE---eCCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A---QICLW---DINA  210 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g---~i~iw---d~~~  210 (424)
                      ++++ .....|.+|++..        ....+..++. .-+.|..+.++..|. +|++--.+   .   .+|+|   +...
T Consensus        31 Lfva-~~g~~Vev~~l~~--------~~~~~~~~F~-Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~   99 (215)
T PF14761_consen   31 LFVA-ASGCKVEVYDLEQ--------EECPLLCTFS-TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQK   99 (215)
T ss_pred             EEEE-cCCCEEEEEEccc--------CCCceeEEEc-chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhc
Confidence            4343 5567899999985        2345555555 447899999999888 78874322   1   45554   3221


Q ss_pred             CCCC----------------Cccc-ceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          211 APKN----------------KSLE-AMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       211 ~~~~----------------~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      ....                .... .+.... .-..++.+++..|...+++ .| .++.+.+|.++.
T Consensus       100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg-~~~~l~lf~l~~  164 (215)
T PF14761_consen  100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VG-CGNKLVLFTLKY  164 (215)
T ss_pred             ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EE-cCCEEEEEEEEE
Confidence            1000                0000 011111 1234677888888777776 33 357888888764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.52  E-value=4.7  Score=34.32  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=46.3

Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE------ec-------CCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT------FD-------SHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~------~~-------~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      .++..+..  .+.+ |++-+.+|.+++||+.+....+..      +.       .....|..+..+.+|- -+++-+ +|
T Consensus        13 s~~~~l~~--~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng   87 (219)
T PF07569_consen   13 SPVSFLEC--NGSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NG   87 (219)
T ss_pred             CceEEEEe--CCCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CC
Confidence            34444443  4664 667788999999999984322111      11       3456789999998885 344443 57


Q ss_pred             eEEEeeCCC
Q 014433          341 RLMVWDLSR  349 (424)
Q Consensus       341 ~i~iwd~~~  349 (424)
                      ..+.|+..-
T Consensus        88 ~~y~y~~~L   96 (219)
T PF07569_consen   88 DSYSYSPDL   96 (219)
T ss_pred             CEEEecccc
Confidence            788888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=86.50  E-value=26  Score=32.12  Aligned_cols=155  Identities=8%  Similarity=-0.037  Sum_probs=80.7

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~  257 (424)
                      ...+.++.+.|++.  ++..+..|.+..- .+.+.  .++..+  ...-...++++.+.+++. ++++ +..|.+++=..
T Consensus       172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg--~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQ--TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCC--CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccC
Confidence            45678889888664  4444555655431 11111  112111  112346788999999876 4434 45676653234


Q ss_pred             CCCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEE
Q 014433          258 RTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       258 ~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l  333 (424)
                      ..+.....+... ......+..+.+.+++. ++++ +.+|.+.. .... ++.-....   .-......+.|..++. .+
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~  317 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAG-GGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEK-GF  317 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCC-EEEE-cCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCc-eE
Confidence            444332222111 01224578899998776 4544 45675543 3222 33322222   1123577788876664 44


Q ss_pred             EEEECCCeEEEeeC
Q 014433          334 ASCCLGRRLMVWDL  347 (424)
Q Consensus       334 ~s~~~dg~i~iwd~  347 (424)
                       ..+..|.|.-|+-
T Consensus       318 -~~G~~G~il~~~~  330 (334)
T PRK13684        318 -VLGQRGVLLRYVG  330 (334)
T ss_pred             -EECCCceEEEecC
Confidence             4566777776653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.31  E-value=22  Score=31.06  Aligned_cols=161  Identities=13%  Similarity=0.152  Sum_probs=79.7

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      +++.....+...----.++... +. +...-=.++...+||..+          .+.+.++. ..++.++|+.  ++. .
T Consensus        78 g~~~~~~~l~~~~FgEGit~~~-d~-l~qLTWk~~~~f~yd~~t----------l~~~~~~~-y~~EGWGLt~--dg~-~  141 (264)
T PF05096_consen   78 GKVLQSVPLPPRYFGEGITILG-DK-LYQLTWKEGTGFVYDPNT----------LKKIGTFP-YPGEGWGLTS--DGK-R  141 (264)
T ss_dssp             SSEEEEEE-TTT--EEEEEEET-TE-EEEEESSSSEEEEEETTT----------TEEEEEEE--SSS--EEEE--CSS-C
T ss_pred             CcEEEEEECCccccceeEEEEC-CE-EEEEEecCCeEEEEcccc----------ceEEEEEe-cCCcceEEEc--CCC-E
Confidence            3444334444333333344443 22 444445678999999987          44455554 4567888883  455 4


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-----e
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-----S  268 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-----~  268 (424)
                      |+.+.....+..+|..+-+....+... .-...-..++.+.|- + ..+.|=.=....|...|..++.+...+-     .
T Consensus       142 Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~-G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~  218 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-N-GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRP  218 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-T-TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred             EEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-c-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence            666666678999998765432222110 000011245556665 2 2355444455566666666655311000     0


Q ss_pred             -------eeccCCCeeEEEecCCCCeEEEEEe
Q 014433          269 -------VVAHQSEVNCLAFNPFNEWILATGS  293 (424)
Q Consensus       269 -------~~~~~~~v~~v~~~~~~~~~l~tg~  293 (424)
                             ......-.+.||++|....+++||=
T Consensus       219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             HHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence                   0011345789999999988888874

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.16  E-value=3.7  Score=34.95  Aligned_cols=68  Identities=4%  Similarity=0.047  Sum_probs=43.5

Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeee-------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          189 FKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFK-------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .+. +|++-..+|.+++||+.+.+..-.. .....+.       .....|..+.++.+|. .+++- .+|..+.|+..-
T Consensus        21 ~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~L   96 (219)
T PF07569_consen   21 NGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPDL   96 (219)
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEecccc
Confidence            355 7888899999999999987543221 1111111       3456788888887765 34343 457788887764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.84  E-value=25  Score=31.31  Aligned_cols=212  Identities=14%  Similarity=0.095  Sum_probs=112.6

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC-cccceeeeec-----CCccEeeEEEecCCC-----------cE
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFKV-----HEGVVEDVAWHLRHE-----------YL  242 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~~~-----------~~  242 (424)
                      ..+.|+++|.+. +.++...-+...+||........ ....+..+..     .....+.+.|+....           ..
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            458899999776 67777778899999997221110 0011111111     224567777764432           22


Q ss_pred             EEEEeCCCeEEEEEcCCCCCC--CCeeeeec-cCCCee-EEEe--cCCCCeEEEEEeCCCcEEEEECCCCCCcc--eEec
Q 014433          243 FGSVGDDQYLLIWDLRTPSVS--KPVQSVVA-HQSEVN-CLAF--NPFNEWILATGSTDKTVKLFDLRKISTAL--HTFD  314 (424)
Q Consensus       243 ~~s~~~dg~i~i~d~~~~~~~--~~~~~~~~-~~~~v~-~v~~--~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~  314 (424)
                      |+.+++||+|.-|...-....  .....+.. ....|+ -+++  ...+.+|.++-...++|.+||-.- .++.  ..+.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCcc
Confidence            456789999999985433210  11222221 123332 2333  344566777777889999998653 1110  0111


Q ss_pred             CCC----------------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE--cCCCCC
Q 014433          315 SHK----------------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH--GGHTSK  376 (424)
Q Consensus       315 ~h~----------------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~  376 (424)
                      ...                --|+-..-.+... -=+.+..-|.|-+||+.-               .+++.+  .+.-..
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~G---------------~l~~r~as~g~LNa  245 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLNG---------------QLLRRVASSGRLNA  245 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCCC---------------cEEEEeccCCcccC
Confidence            100                0011111112111 112223345777887764               444433  333445


Q ss_pred             cceEEeCC------CCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          377 ISDFSWNP------CEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       377 v~~~~~~~------~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      -+.++..|      .+. +|+.-=.||+|..+|..++.+.
T Consensus       246 PWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             CceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCcee
Confidence            66777755      355 6665557999999999877643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.44  E-value=32  Score=31.38  Aligned_cols=215  Identities=15%  Similarity=0.147  Sum_probs=108.8

Q ss_pred             CceeEEEecCCCCceEEEEeCCCc------EEEEeCCCCC-CCCcccce--eeeecCC--------ccEeeEEEecCCCc
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQ------ICLWDINAAP-KNKSLEAM--QIFKVHE--------GVVEDVAWHLRHEY  241 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~------i~iwd~~~~~-~~~~~~~~--~~~~~~~--------~~v~~~~~~~~~~~  241 (424)
                      +.+.+|.+.+.+. .+++.+.+|.      +...++.... ....+...  ..+..-.        ....+|++.+++. 
T Consensus        20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-   97 (326)
T PF13449_consen   20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-   97 (326)
T ss_pred             CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence            4567889987555 5777777777      6666655411 11111111  1111111        1455788866654 


Q ss_pred             EEEEEeCC------CeEEEEEcCCCCCCCCee------------eeeccCCCeeEEEecCCCCeEEEEEeC-----CC--
Q 014433          242 LFGSVGDD------QYLLIWDLRTPSVSKPVQ------------SVVAHQSEVNCLAFNPFNEWILATGST-----DK--  296 (424)
Q Consensus       242 ~~~s~~~d------g~i~i~d~~~~~~~~~~~------------~~~~~~~~v~~v~~~~~~~~~l~tg~~-----dg--  296 (424)
                      ++++.-.+      ..|..++.. +.....+.            .-.......-+|+++|+|..++++ ..     |+  
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~-~E~~l~~d~~~  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA-MESPLKQDGPR  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE-ECccccCCCcc
Confidence            55455455      678888866 33221110            111234578899999999854433 22     22  


Q ss_pred             c-------EEE--EECCCCCCcceE----ecC-----CCCCEEEEEEcCCCCcEEEEE-E----CCCeEEEeeCCCCCc-
Q 014433          297 T-------VKL--FDLRKISTALHT----FDS-----HKEEVFQVGWNPKNETILASC-C----LGRRLMVWDLSRIDE-  352 (424)
Q Consensus       297 ~-------i~i--wd~~~~~~~~~~----~~~-----h~~~v~~~~~sp~~~~~l~s~-~----~dg~i~iwd~~~~~~-  352 (424)
                      .       +++  ||..+.+.+...    +..     ....|+.+.+-++++ +|+.= +    ....++|+.+..... 
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~at  254 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSDAT  254 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccccc
Confidence            1       444  454442323222    222     356789999999996 44332 2    234566665543221 


Q ss_pred             -ccCCCCcC-----CCCCeeeEEEcC---CCCCcceEEeCC--CCCcEEEEEeCCCc
Q 014433          353 -EQTPEDAE-----DGPPELLFIHGG---HTSKISDFSWNP--CEDWVISSVAEDNI  398 (424)
Q Consensus       353 -~~~~~~~~-----~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~~l~s~~~dg~  398 (424)
                       ........     .....+++.+..   ....+-.++|.|  ++...|+..++|+.
T Consensus       255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF  311 (326)
T PF13449_consen  255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF  311 (326)
T ss_pred             ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence             11110000     111223322222   144578899976  56655666676664

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.06  E-value=30  Score=30.64  Aligned_cols=168  Identities=17%  Similarity=0.121  Sum_probs=96.9

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ..++..+.-++-+..++++.+   ++..+..+.-++|.|+.+..+..       ....+. ..+--+++..  .|. +..
T Consensus        77 ~~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~-------~~~~ln-t~gyaygv~v--sGn-~aY  142 (370)
T COG5276          77 DVLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPT-------LIGFLN-TDGYAYGVYV--SGN-YAY  142 (370)
T ss_pred             cceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcc-------eecccc-CCceEEEEEe--cCC-EEE
Confidence            345566777888888999863   34445666779999998742221       111111 1122233333  365 677


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      .+..|.-+.+.|+.+.+.. .  ....+......-..++.+  |++-+ .+..|+-+.+.|+..+.....+.... ....
T Consensus       143 VadlddgfLivdvsdpssP-~--lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n-~g~g  215 (370)
T COG5276         143 VADLDDGFLIVDVSDPSSP-Q--LAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYN-TGPG  215 (370)
T ss_pred             EeeccCcEEEEECCCCCCc-e--eeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEe-cCCc
Confidence            7876667778899876442 1  112223333444666666  44444 55678889999999877533333222 2336


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKIS  307 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~  307 (424)
                      +.++..+++.. +++..  +--+.+-|...+.
T Consensus       216 ~~sv~vsdnr~-y~vvy--~egvlivd~s~~s  244 (370)
T COG5276         216 TYSVSVSDNRA-YLVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             eEEEEecCCee-EEEEc--ccceEEEecCCCC
Confidence            78888887554 23332  3346666666543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.84  E-value=5.4  Score=23.15  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=20.2

Q ss_pred             cCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          237 LRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       237 ~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      |+++.++++...++.|.++|..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            5677788888789999999997654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.47  E-value=7.1  Score=38.62  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=25.3

Q ss_pred             CCEEEEEEcC---CCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          318 EEVFQVGWNP---KNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       318 ~~v~~~~~sp---~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ..+..++.++   ++..+|++.+.|+.+|+||+.++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            3456666666   2445899999999999999999876

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02193 nitrile-specifier protein

Probab=82.30  E-value=50  Score=31.98  Aligned_cols=62  Identities=8%  Similarity=0.036  Sum_probs=31.1

Q ss_pred             CcEEEEEeCCC-----eEEEEEcCCCCCCCCeee---eeccCCCeeEEEecCCCCeEEEEEeCC----CcEEEEECCC
Q 014433          240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTD----KTVKLFDLRK  305 (424)
Q Consensus       240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~d----g~i~iwd~~~  305 (424)
                      ..+++.|+.++     .+..||+.+..- ..+..   ..........+.+  ++. +++.|+.+    ..+.+||+.+
T Consensus       279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t  352 (470)
T PLN02193        279 ENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQ  352 (470)
T ss_pred             CEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCC
Confidence            45777777543     467788776441 11110   0011111112222  244 66777655    4588999876

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=81.98  E-value=37  Score=30.20  Aligned_cols=116  Identities=15%  Similarity=0.206  Sum_probs=65.1

Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe------CCCeEEEEEcCCCCCCCCeeeeec--
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA--  271 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~~~~~~~~~~~~~~--  271 (424)
                      -..|++||....+-.      ..-.+-.+.|+++.|..+ ..++++|.      ....+..||..+..    ...+..  
T Consensus        15 C~~lC~yd~~~~qW~------~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~   83 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWS------SPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGS   83 (281)
T ss_pred             CCEEEEEECCCCEee------cCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCe----eeecCCcc
Confidence            346999998765321      111224678999999855 45776664      45668889988755    222222  


Q ss_pred             ---cCCCeeEEEecC-CCCeEEEEEe-CCC--cEEEEECCCCCCcceE-ecCCCCCEEEEEEcC
Q 014433          272 ---HQSEVNCLAFNP-FNEWILATGS-TDK--TVKLFDLRKISTALHT-FDSHKEEVFQVGWNP  327 (424)
Q Consensus       272 ---~~~~v~~v~~~~-~~~~~l~tg~-~dg--~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp  327 (424)
                         -.++|+.+.+.. ++..+.+.|. .+|  .|..||=.+. ..+.. .......|..+.+-|
T Consensus        84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W-~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW-SSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce-EeccccccCCCCEEEEEEEEe
Confidence               247788887743 3334555554 333  4667765542 22222 222244566655543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.70  E-value=30  Score=29.07  Aligned_cols=105  Identities=16%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-C--C---cEEEE-ECCC---CCCc
Q 014433          240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-D--K---TVKLF-DLRK---ISTA  309 (424)
Q Consensus       240 ~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-d--g---~i~iw-d~~~---~~~~  309 (424)
                      +.+|++ .....|.+|++.... ..++..+.. -+.|..+.++..|.+ ++|--. .  .   .+++| +.|.   ...+
T Consensus        29 d~Lfva-~~g~~Vev~~l~~~~-~~~~~~F~T-v~~V~~l~y~~~GDY-lvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVA-ASGCKVEVYDLEQEE-CPLLCTFST-VGRVLQLVYSEAGDY-LVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEE-cCCCEEEEEEcccCC-CceeEEEcc-hhheeEEEeccccce-EEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            456544 556789999999444 345555544 478999999999996 555322 1  1   45665 2221   1122


Q ss_pred             ce-EecC---------------------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          310 LH-TFDS---------------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       310 ~~-~~~~---------------------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +. .+-+                     -+.++.+++..|-...++ .|+ ++.+.||.+...
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence            22 1112                     134677888888665644 444 456999988764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.65  E-value=55  Score=31.38  Aligned_cols=62  Identities=10%  Similarity=0.117  Sum_probs=36.8

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCC
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH  239 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  239 (424)
                      .-...+.|+|.|++. +|++--..|.|++++................. ........|+++|+-
T Consensus        28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345578999999885 45544436999999865432211111011111 135678999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.03  E-value=71  Score=32.27  Aligned_cols=52  Identities=17%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      -.|+|++.....       +....-....+-.+.|+.+.. ++ +...+|++++|++-...
T Consensus        64 ~~I~If~~sG~l-------L~~~~w~~~~lI~mgWs~~ee-LI-~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   64 PYIRIFNISGQL-------LGRILWKHGELIGMGWSDDEE-LI-CVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eeEEEEeccccc-------hHHHHhcCCCeeeecccCCce-EE-EEeccceEEEeecchhh
Confidence            457788775331       111111233788999998764 44 67899999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	424
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-165
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-162
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-162
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-161
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-161
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-158
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-12
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		5e-12
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-08
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-08
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-07
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-07
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-07
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-07
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		6e-07
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		6e-07
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-06
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		3e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-06
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		5e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		2e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-05
2h9l_A	329	Wdr5delta23 Length = 329		3e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		3e-04
4a08_B	382	Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup		7e-04
3ei1_B	383	Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho		8e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  577 bits (1487), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/400 (68%), Positives = 328/400 (82%), Gaps = 2/400 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYM
Sbjct: 75  -EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYM 133
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 134 PQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHL 193
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDI+A PK  K ++A  IF  H  VVEDV+WHL HE LFGSV DDQ L+
Sbjct: 194 LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLM 253
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R+ + SKP  SV AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct: 254 IWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+PEDAEDGPPELLFIHGGH
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           T+KISDFSWNP E WVI SV+EDNI+Q+WQMAENIY+DED
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED 413

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  566 bits (1459), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/407 (66%), Positives = 328/407 (80%), Gaps = 3/407 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 19  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 79  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 137
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 138 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R  + SKP  +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
           T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+ ++P  E
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASE 424

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  566 bits (1459), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/407 (66%), Positives = 328/407 (80%), Gaps = 3/407 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 21  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 81  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 139
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 140 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 199
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R  + SKP  +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED-DLPGDE 419
           T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+ ++P  E
Sbjct: 380 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASE 426

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/400 (67%), Positives = 324/400 (81%), Gaps = 2/400 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD  +  GKDYSV ++ILGTHTS+
Sbjct: 23  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A VQLP +D++ D  HYD+++ +FGGFG   GK++I  +INH+GEVNRARYM
Sbjct: 83  -EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYM 141
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQN  +IATKT S++V VFDY+KHPSKP   G C PDLRLRGH  EGYGLSW+    G+L
Sbjct: 142 PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 201
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  ICLWDINA PK ++ ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R  + SKP  +V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LH+F
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 381
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
           T+KISDFSWNP E W+I SV+EDNI+Q+WQMAEN+Y+DE+
Sbjct: 382 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 421

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  563 bits (1452), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/399 (67%), Positives = 323/399 (80%), Gaps = 2/399 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV+THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARYM
Sbjct: 77  -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYM 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  +CLWDINA PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R+ + SKP   V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LHTF
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412
           T+KISDFSWNP E WVI SV+EDNI+QIWQMAENIY+DE
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDE 414

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/399 (66%), Positives = 318/399 (79%), Gaps = 2/399 (0%)
Query: 15  RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE 74
           R+INEEYKIWKKNTPFLYDLV THAL+WPSLTV+WLP+  +P GKDY++  ++LGTHTS+
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 75  NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYM 134
            E N+L++A+V +P DD++ DA H D D+ +FGGFG   GK++   +INH+GEVNRARY 
Sbjct: 77  -EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYX 135
Query: 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194
           PQNP +IATKT S++V VFDY+KHP+KP   G C+PDLRLRGH  EGYGLSW+    GHL
Sbjct: 136 PQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL 195
Query: 195 LSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253
           LS SDD  +CLWDINA PK  K ++A  IF  H  VVEDVAWHL HE LFGSV DDQ L 
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           IWD R+ + SKP   V AH +EVNCL+FNP++E+ILATGS DKTV L+DLR +   LHTF
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Query: 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373
           +SHK+E+FQV W+P NETILAS    RRL VWDLS+I EEQ+ EDAEDGPPELLFIHGGH
Sbjct: 316 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412
           T+KISDFSWNP E WVI SV+EDNI QIWQ AENIY+DE
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENIYNDE 414

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 42/254 (16%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GHS+  +G+++S   +  + S SDD  + LW       N++ + +Q    H   V  V
Sbjct: 176 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVRGV 227
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
           A+    + +  S  DD+ + +W+       + +Q++  H S VN +AF P  +  +A+ S
Sbjct: 228 AFSPDGQTI-ASASDDKTVKLWNRN----GQLLQTLTGHSSSVNGVAFRPDGQ-TIASAS 281
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS-----------------C 336
            DKTVKL++  +    L T   H   V+ V ++P  +TI ++                  
Sbjct: 282 DDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT 339
Query: 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPP--------ELLFIHGGHTSKISDFSWNPCEDW 388
             G    VW ++   + QT   A D           +LL    GH+S +   +++P +  
Sbjct: 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQ 398
Query: 389 VISSVAEDNILQIW 402
            I+S ++D  +++W
Sbjct: 399 TIASASDDKTVKLW 412

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRHEYLFGS 245
           ++LSG  D  I L+D+  + +        +         VH   VE V W+     +F S
Sbjct: 58  YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117
Query: 246 VGDDQYLLIWD---LRTPSVSKPVQSVVAHQ----SEVNCLAFNPFNEWILATGSTDKTV 298
              D+ L +WD   L+T  V    ++V +H     S  +CL         +A G+    V
Sbjct: 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL---------VAVGTRGPKV 168
Query: 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358
           +L DL+  S + H    H++E+  V W+P+ + ILA+     R+ +WD+ R        D
Sbjct: 169 QLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 359 AEDGPPELLF--IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
             +G         +  H  K++   +   +   + +V  DN +++W
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLW 272

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA---APKNKS-LEAM 220
           + A +   R   HS+    + ++  ++  L SG ++ +I +WD+N    +P N + L   
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP------SVSKPVQSVVAHQS 274
           Q     + V+  +AW+    ++F S G   +  IWDL+        S + P   +   + 
Sbjct: 160 QSMSSVDEVIS-LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI---KQ 215
Query: 275 EVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNE 330
           +++ + ++P N   +AT +    D ++ ++DLR  +T L T +  H++ +  + W  ++E
Sbjct: 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE 275
Query: 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
            +L S      +++W+         PE AE
Sbjct: 276 HLLLSSGRDNTVLLWN---------PESAE 296

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 106/234 (45%), Gaps = 31/234 (13%)
Query: 184 LSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL 242
           L WS      +++G+ D+  + L+  N A  N ++ +M  F  H   V+ V ++ + + +
Sbjct: 73  LDWSH--NNKIIAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNV 128
Query: 243 FGSVGDDQYLLIWDLR----TPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDK 296
             S G++  + IWD+     +PS   P+    +  S  EV  LA+N     + A+  +  
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 297 TVKLFDLRKISTALH-TFDSH----KEEVFQVGWNPKNETILASCCLGRR---LMVWDLS 348
              ++DL+     +H ++ S     K+++  V W+PKN T +A+         +++WDL 
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
             +   TP         L  ++ GH   I    W   ++ ++ S   DN + +W
Sbjct: 249 NAN---TP---------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
           D  L +W L      KP+ S+    S+ N L ++  N+ I+A    + +++L+   + + 
Sbjct: 44  DSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANN 101
Query: 309 ALHT---FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE 365
           A+++   F +H   V  V +N K + +LAS      + +WD+++  E  +P +     P 
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE--SPSNYTPLTPG 159
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
                     ++   +WN     V +S    N   IW +
Sbjct: 160 QSM---SSVDEVISLAWNQSLAHVFASAGSSNFASIWDL 195

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 81/312 (25%)
Query: 164 LDGACSPDLRLRGHSTEGYGLSW---SKFKEGH---------------LLSGSDDAQICL 205
           L  +C  D R+R   TEG   SW   S   EGH               L S S DA  C+
Sbjct: 30  LLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265
           W  N        E +   + HE  V+ VAW      L  +   D+ + +W++      + 
Sbjct: 88  WKKN----QDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYEC 142
Query: 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVG 324
           V  + +H  +V  + ++P  E +LA+ S D TVKL+   +       T + H+  V+ + 
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 325 WNPKNETILASCCLGRRLMVWDLSRIDEEQT----------------------------- 355
           ++P  +  LASC   R + +W       EQ                              
Sbjct: 202 FDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 356 -------------------PEDAEDGPPELLF-----IHGGHTSKISDFSWNPCEDWVIS 391
                               ED    P +  F     +H  H+  ++  +WNP E  +++
Sbjct: 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLA 320
Query: 392 SVAEDNILQIWQ 403
           S ++D  +  W+
Sbjct: 321 SCSDDGEVAFWK 332

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200
           +A   + +   +F+ S    +   DG       L GH        +   +E  L++GS D
Sbjct: 123 VACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260
               LWD+    +  S+   +    H   V  ++ +  +  +F S   D  + +WDLR  
Sbjct: 180 QTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI- 237
Query: 261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
             S+ V++   H+ ++N + F P  +    TGS D T +LFD+R
Sbjct: 238 -TSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMR 279

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 197 GSDDAQICLWDINA-APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255
           G  D+   ++++++ A ++ ++   ++   H+G      +    E    +   DQ  ++W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 256 DLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF 313
           D+ T        S     H ++V  L+ N  N  +  +GS D TV+L+DLR  S A+ T+
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 314 DSHKEEVFQVGWNPKNE 330
             H+ ++  V + P  +
Sbjct: 246 HGHEGDINSVKFFPDGQ 262

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
           +  ++G +  + Q+   GE ++   ++ +  +L A  T SAEV ++D  +          
Sbjct: 141 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 191
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
                RLR    HS     LSW+ +    L SGS    I   D+  A  +     +    
Sbjct: 192 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 238
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
            H   V  + W     +L  S G+D  + +W    PS        P+Q+   HQ  V  +
Sbjct: 239 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
           A+ P+   +LATG  ++D+ ++++++      L   D+H  +V  + W+P  + +++   
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 351
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
             + +L++W    ++++ E +                 GHTS++   + +P +   ++S 
Sbjct: 352 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 393
Query: 394 AEDNILQIWQMAE 406
           A D  L++W+  E
Sbjct: 394 AADETLRLWRCFE 406

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 26/226 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
           Y L+   +  G++L+ + D  + LW   +A     L+ +Q+ +  E  +  VAW     Y
Sbjct: 117 YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 172
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           L  +VG     + +WD++     K ++++ +H + V  L++N +   IL++GS    +  
Sbjct: 173 L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 224
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
            D+R     + T   H +EV  + W P     LAS      + VW          P    
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 273
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQM 404
           +G    L     H   +   +W P +  V+++     D  ++IW +
Sbjct: 274 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYL 252
           +LS S D  I +W +     N  +   +  + H   V DV   +  +  F   G  D  L
Sbjct: 31  ILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVV--ISSDGQFALSGSWDGTL 87
Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312
            +WDL T + ++     V H  +V  +AF+  N  I++ GS DKT+KL++   +      
Sbjct: 88  RLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQ 143
Query: 313 FDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371
            +SH E V  V ++P +   I+ SC   + + VW+L+                +L   H 
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHI 189
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
           GHT  ++  + +P +  + +S  +D    +W + E 
Sbjct: 190 GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG 224

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYL 252
           +LS S D  I +W +     N  +   +  + H   V DV   +  +  F   G  D  L
Sbjct: 54  ILSASRDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVV--ISSDGQFALSGSWDGTL 110
Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312
            +WDL T + ++     V H  +V  +AF+  N  I++ GS DKT+KL++   +      
Sbjct: 111 RLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQ 166
Query: 313 FDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371
            +SH E V  V ++P +   I+ SC   + + VW+L+                +L   H 
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHI 212
Query: 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407
           GHT  ++  + +P +  + +S  +D    +W + E 
Sbjct: 213 GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEG 247

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
           +  ++G +  + Q+   GE ++   ++ +  +L A  T SAEV ++D  +          
Sbjct: 130 WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 180
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
                RLR    HS     LSW+ +    L SGS    I   D+  A  +     +    
Sbjct: 181 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 227
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
            H   V  + W     +L  S G+D  + +W    PS        P+Q+   HQ  V  +
Sbjct: 228 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
           A+ P+   +LATG  ++D+ ++++++      L   D+H  +V  + W+P  + +++   
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 340
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
             + +L++W    ++++ E +                 GHTS++   + +P +   ++S 
Sbjct: 341 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 382
Query: 394 AEDNILQIWQMAE 406
           A D  L++W+  E
Sbjct: 383 AADETLRLWRCFE 395

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 26/226 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
           Y L+   +  G++L+ + D  + LW   +A     L+ +Q+ +  E  +  VAW     Y
Sbjct: 106 YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 161
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           L  +VG     + +WD++     K ++++ +H + V  L++N +   IL++GS    +  
Sbjct: 162 L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 213
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
            D+R     + T   H +EV  + W P     LAS      + VW          P    
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 262
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQM 404
           +G    L     H   +   +W P +  V+++     D  ++IW +
Sbjct: 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L+GH+   Y L   +F   H++SGS D  I +WD+           +     H+ +   +
Sbjct: 275 LQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGM 325
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
              L+   L  S   D  + IWD++T    + +Q    HQS V CL FN      + T S
Sbjct: 326 --ELKDNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSS 379
Query: 294 TDKTVKLFDLR 304
            D TVKL+DL+
Sbjct: 380 DDGTVKLWDLK 390

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 33/216 (15%)
Query: 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248
             E  ++SGS DA + +WDI         + + +   H   V  V +  R      S   
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCVQYDGRRVV---SGAY 257
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
           D  + +WD   P     + ++  H + V  L F+  +   + +GS D +++++D+ +   
Sbjct: 258 DFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDV-ETGN 310
Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368
            +HT   H+      G   K+  IL S      + +WD+      QT +    GP +   
Sbjct: 311 CIHTLTGHQS--LTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQ----GPNK--- 360
Query: 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
               H S ++   +N  +++VI+S ++D  +++W +
Sbjct: 361 ----HQSAVTCLQFN--KNFVITS-SDDGTVKLWDL 389

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272
           K ++ E +   K HE  V   A+     Y+  +   D+ + IWD    +  K V +   H
Sbjct: 650 KAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD---SATGKLVHTYDEH 705
Query: 273 QSEVNCLAF-NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
             +VNC  F N  N  +LATGS D  +KL+DL +     +T   H   V    ++P +E 
Sbjct: 706 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE- 763
Query: 332 ILASCCLGRRLMVWDLSRIDEEQT 355
           +LASC     L +WD+   +E ++
Sbjct: 764 LLASCSADGTLRLWDVRSANERKS 787

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 213 KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272
           K ++ E +   K HE  V   A+     Y+  +   D+ + IWD    +  K V +   H
Sbjct: 643 KAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWD---SATGKLVHTYDEH 698
Query: 273 QSEVNCLAF-NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
             +VNC  F N  N  +LATGS D  +KL+DL +     +T   H   V    ++P +E 
Sbjct: 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDE- 756
Query: 332 ILASCCLGRRLMVWDLSRIDEEQT 355
           +LASC     L +WD+   +E ++
Sbjct: 757 LLASCSADGTLRLWDVRSANERKS 780

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 136/313 (43%), Gaps = 62/313 (19%)
Query: 109 FGCANGKVQIIQQINHDGE-VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA 167
           +  ++G +  + Q+   GE ++   ++ +  +L A  T SAEV ++D  +          
Sbjct: 50  WSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK-------- 100
Query: 168 CSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224
                RLR    HS     LSW+ +    L SGS    I   D+  A  +     +    
Sbjct: 101 -----RLRNMTSHSARVGSLSWNSYI---LSSGSRSGHIHHHDVRVAEHH-----VATLS 147
Query: 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-----PVQSVVAHQSEVNCL 279
            H   V  + W     +L  S G+D  + +W    PS        P+Q+   HQ  V  +
Sbjct: 148 GHSQEVCGLRWAPDGRHL-ASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 280 AFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337
           A+ P+   +LATG  ++D+ ++++++      L   D+H  +V  + W+P  + +++   
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAH-SQVCSILWSPHYKELISGHG 260
Query: 338 LGR-RLMVWD---LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393
             + +L++W    ++++ E +                 GHTS++   + +P +   ++S 
Sbjct: 261 FAQNQLVIWKYPTMAKVAELK-----------------GHTSRVLSLTMSP-DGATVASA 302
Query: 394 AEDNILQIWQMAE 406
           A D  L++W+  E
Sbjct: 303 AADETLRLWRCFE 315

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY 241
           Y L+   +  G++L+ + D  + LW   +A     L+ +Q+ +  E  +  VAW     Y
Sbjct: 26  YYLNLVDWSSGNVLAVALDNSVYLW---SASSGDILQLLQMEQPGE-YISSVAWIKEGNY 81
Query: 242 LFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           L  +VG     + +WD++     K ++++ +H + V  L++N +   IL++GS    +  
Sbjct: 82  L--AVGTSSAEVQLWDVQQ---QKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHH 133
Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
            D+R     + T   H +EV  + W P     LAS      + VW          P    
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW----------PSAPG 182
Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAEN 407
           +G    L     H   +   +W P +  V+++     D  ++IW +   
Sbjct: 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 194 LLSGSDDAQICLWDINAAPKNKSLEA-MQIFKVHEGVVEDVAWHLRHEYLFG-SVGDDQY 251
           L+SGS D  + +W +    +N       +    H   V D+A  L  E  F  S   D+ 
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQENCFAISSSWDKT 99
Query: 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR---KIST 308
           L +WDLRT +  K     V HQSEV  +AF+P N  IL+ G+ ++ +KL+++    K S+
Sbjct: 100 LRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNILGECKFSS 155
Query: 309 ALHTFDSHKEEVFQVGWNPKNETI---------LASCCLGRRLMVWDLSRIDEEQTPEDA 359
           A    ++H + V  V ++P  ++           AS     RL VW+ +           
Sbjct: 156 AEK--ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------- 203
Query: 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409
                ++ +    H S ++  S +P   + I++  +D  L IW +    Y
Sbjct: 204 -----QIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTY 247

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 289 LATGSTDKTVKLFDLRKISTALHT-FDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
           LAT S+D++VK+FD+R     L      H+  V+QV W +P    ILASC   R++++W 
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP 384
                        E+G  E    H GH S ++   W P
Sbjct: 87  -----------REENGTWEKSHEHAGHDSSVNSVCWAP 113

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 60/339 (17%)
Query: 53  REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCA 112
           R  PPG   + +    G+   +NE NY+ L  +         D  + D D    GGF   
Sbjct: 38  RPLPPGSLQTAETFATGSW--DNEENYISLWSI--------GDFGNLDSD----GGF--- 80
Query: 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLD------- 165
            G  Q++  I H G+V   ++  Q   + A+ T    V++     HP+   L        
Sbjct: 81  EGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFL----HHPNNQTLSVNQQWTT 136
Query: 166 -----GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
                G  SP       S    G+  +  +   +++  +D +I L+  +     ++++  
Sbjct: 137 AHYHTGPGSPSYS----SAPCTGVVCNNPE---IVTVGEDGRINLFRADHKEAVRTIDNA 189
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVAHQSEVNC 278
               +H      V +    E L  +V     L IWD R    ++P Q  S+   +  ++C
Sbjct: 190 DSSTLHA-----VTFLRTPEIL--TVNSIGQLKIWDFRQQG-NEPSQILSLTGDRVPLHC 241
Query: 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338
           +  +P  + ++ATG  D  + ++D+R+ +  +    +H+ E+++V ++P N   L +C  
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSE 301
Query: 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377
              L  WD S       PE +       LF  GG +S  
Sbjct: 302 DGSLWHWDAS----TDVPEKSS------LFHQGGRSSTF 330

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
           +AT S+DKT+K+F++  +    + T   H+  V++V W +PK  TILASC    ++M+W 
Sbjct: 24  MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
                        E+G    + +H  H++ ++   W P E
Sbjct: 83  -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 71/291 (24%)
Query: 159 PSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218
           P K  L G  SP  R+  H                ++S S+DA I +WD       ++L 
Sbjct: 99  PEKYALSGHRSPVTRVIFHPVFSV-----------MVSASEDATIKVWDYETGDFERTL- 146
Query: 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278
                K H   V+D+++    + L  S   D  + +WD +       ++++  H   V+ 
Sbjct: 147 -----KGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC---IRTMHGHDHNVSS 197
Query: 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338
           ++  P  + I++  S DKT+K++++ +    + TF  H+E V  V  N ++ T++ASC  
Sbjct: 198 VSIMPNGDHIVS-ASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSN 254
Query: 339 GRRLMVW---------------------------DLSRIDEEQTPEDAEDGPPELLFIHG 371
            + + VW                             S I E    E  + G P    + G
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 372 GH--TSKISDFSWNPC-------EDWV-----------ISSVAEDNILQIW 402
               T K+ D S   C       ++WV           I S A+D  L++W
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
           ++LSGSDD  + LW+      N +LE  Q F+ HE  V  VA++ +    F S   D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
            +W L   TP+ +         +  VN + + P  ++  + T S D T+K++D +  S  
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
           + T + H   V    ++P    I++    G  L +W+ S    E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
           LAT S+DKT+K+F++  +    + T   H+  V++V W +PK  TILASC    ++++W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
                        E+G    + +H  H++ ++   W P E
Sbjct: 83  -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
           ++LSGSDD  + LW+      N +LE  Q F+ HE  V  VA++ +    F S   D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
            +W L   TP+ +         +  VN + + P  ++  + T S D T+K++D +  S  
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
           + T + H   V    ++P    I++    G  L +W+ S    E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
           ++LSGSDD  + LW+      N +LE  Q F+ HE  V  VA++ +    F S   D+ +
Sbjct: 111 YVLSGSDDLTVKLWNWE---NNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
            +W L   TP+ +         +  VN + + P  ++  + T S D T+K++D +  S  
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
           + T + H   V    ++P    I++    G  L +W+ S    E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
           ++LSGSDD  + LW+      N +LE  Q F+ HE  V  VA++ +    F S   D+ +
Sbjct: 111 YVLSGSDDLTVKLWN---WENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 253 LIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTA 309
            +W L   TP+ +         +  VN + + P  ++  + T S D T+K++D +  S  
Sbjct: 166 KVWSLGQSTPNFTL----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C 220
Query: 310 LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
           + T + H   V    ++P    I++    G  L +W+ S    E+T
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDG-TLKIWNSSTYKVEKT 265

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
           LAT S+DKT+K+F++  +    + T   H+  V++V W +PK  TILASC    ++++W 
Sbjct: 26  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 84
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
                        E+G    + +H  H++ ++   W P E
Sbjct: 85  -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 113

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 166 GACSPDLRLRGHSTEGY-----GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
           GA +  L LRG + EG+      L+ S  +   LLS S D  +  W +    +   +  +
Sbjct: 1   GASNEVLVLRG-TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-V 58
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
           + FK H  +V+D        Y   S   D+ L +WD+ T    +  Q  V H+S+V  + 
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVD 114
Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILAS 335
            +     I+ +GS DKT+K++ ++     L T   H + V QV   P      +   + S
Sbjct: 115 IDKKASMII-SGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395
               + +  W+L++   E              FI  GH S I+  + +P +  +I+S  +
Sbjct: 172 AGNDKMVKAWNLNQFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGK 216
Query: 396 DNILQIWQMA 405
           D  + +W +A
Sbjct: 217 DGEIMLWNLA 226

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 34/250 (13%)
Query: 166 GACSPDLRLRGHSTEGY-----GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM 220
           GA +  L LRG + EG+      L+ S  +   LLS S D  +  W +    +   +  +
Sbjct: 1   GASNEVLVLRG-TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-V 58
Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
           + FK H  +V+D        Y   S   D+ L +WD+ T    +  Q  V H+S+V  + 
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVD 114
Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILAS 335
            +     I+ +GS DKT+K++ ++     L T   H + V QV   P      +   + S
Sbjct: 115 IDKKASMII-SGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395
               + +  W+L++   E              FI  GH S I+  + +P +  +I+S  +
Sbjct: 172 AGNDKMVKAWNLNQFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGK 216
Query: 396 DNILQIWQMA 405
           D  + +W +A
Sbjct: 217 DGEIMLWNLA 226

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Query: 289 LATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWD 346
           LAT S+DKT+K+F++  +    + T   H+  V++V W +PK  TILASC    ++++W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 82
Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
                        E+G    + +H  H++ ++   W P E
Sbjct: 83  -----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GH+     L+ S  +   LLS S D  +  W +    +   +  ++ FK H  +V+D 
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 65
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
                  Y   S   D+ L +WD+ T    +  Q  V H+S+V  +  +     I+ +GS
Sbjct: 66  TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 120
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
            DKT+K++ ++     L T   H + V QV   P      +   + S    + +  W+L+
Sbjct: 121 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
           +   E              FI  GH S I+  + +P +  +I+S  +D  + +W +A
Sbjct: 179 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 220

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GH+     L+ S  +   LLS S D  +  W +    +   +  ++ FK H  +V+D 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 71
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
                  Y   S   D+ L +WD+ T    +  Q  V H+S+V  +  +     I+ +GS
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 126
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
            DKT+K++ ++     L T   H + V QV   P      +   + S    + +  W+L+
Sbjct: 127 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
           +   E              FI  GH S I+  + +P +  +I+S  +D  + +W +A
Sbjct: 185 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 226

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 28/237 (11%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GH+     L+ S  +   LLS S D  +  W +    +   +  ++ FK H  +V+D 
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDC 71
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
                  Y   S   D+ L +WD+ T    +  Q  V H+S+V  +  +     I+ +GS
Sbjct: 72  TLTADGAYAL-SASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMII-SGS 126
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLS 348
            DKT+K++ ++     L T   H + V QV   P      +   + S    + +  W+L+
Sbjct: 127 RDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
           +   E              FI  GH S I+  + +P +  +I+S  +D  + +W +A
Sbjct: 185 QFQIEAD------------FI--GHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA 226

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 41/212 (19%)
Query: 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254
           +SGS D  I +WD+           +  ++ H   V  VA     + +F S  +D  +L+
Sbjct: 143 VSGSKDICIKVWDL------AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNC---------LAFNPFNEWILATGSTDKTVKLFDLRK 305
           WD R P   KP        S++ C         LA++P    +   G  + TV L D + 
Sbjct: 197 WDTRCP---KPA-------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
Query: 306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE 365
            S  L +   H + V  + ++P +   LAS      L V D S + E             
Sbjct: 247 TSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD-SSLSE------------- 291
Query: 366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDN 397
            LF    H   + D +W+P    ++++V  D+
Sbjct: 292 -LFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 290 ATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWDL 347
           AT S+DKT+K+F++  +    + T   H+  V++V W +PK  TILASC    ++ +W  
Sbjct: 25  ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIW-- 82
Query: 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386
                       E+G    + +H  H++ ++   W P E
Sbjct: 83  ----------KEENGRWSQIAVHAVHSASVNSVQWAPHE 111

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 83  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 135
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 136 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 190
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 191 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 245
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 246 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 288

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 85  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 137
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 138 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 192
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 193 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 247
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 248 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 290

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQ 250
            +L+ S D    LWD+      +S + +Q F  H    +  D+A        F S G D+
Sbjct: 168 QILTASGDGTCALWDV------ESGQLLQSFHGHGADVLCLDLA-PSETGNTFVSGGCDK 220
Query: 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
             ++WD+R+    + VQ+   H+S+VN + + P  +   A+GS D T +L+DLR
Sbjct: 221 KAMVWDMRS---GQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLR 270

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVED 232
           + GH+     ++W    +  + SGS+D  + +W+I        L E +   + H   V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           VAWH   + +  S G D  +L+WD+ T +    +   V H   +  + ++  +  ++ T 
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWS-RDGALICTS 194
Query: 293 STDKTVKLFDLRKISTA------------LHTFDSHKEEVFQVGWNPKNETILASCCLGR 340
             DK V++ + RK +              +H     + ++   G++  +E         R
Sbjct: 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE---------R 245
Query: 341 RLMVWDLSRIDE 352
           ++ +WD   ++E
Sbjct: 246 QVALWDTKHLEE 257

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
           WD    +V+    +++   S        P  +    TG  DK V L              
Sbjct: 35  WDSGFCAVNPKFMALIXEASGGGAFLVLPLGK----TGRVDKNVPLVX------------ 78
Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373
            H   V  + W P N+ ++AS      +MVW++        P+     P  E +    GH
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI--------PDGGLVLPLREPVITLEGH 130
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
           T ++   +W+P    V+ S   DN++ +W + 
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 67  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 24/190 (12%)
Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVA 234
           GH+     ++W    +  + SGS+D  + +W+I        L E +   + H   V  VA
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294
           WH   + +  S G D  +L+WD+ T +    +   V H   +  + ++  +  ++ T   
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWS-RDGALICTSCR 196
Query: 295 DKTVKLFDLRKISTA------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342
           DK V++ + RK +              +H     + ++   G++  +E         R++
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSE---------RQV 247
Query: 343 MVWDLSRIDE 352
            +WD   ++E
Sbjct: 248 ALWDTKHLEE 257

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 25/152 (16%)
Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
           WD    +V+    +++   S        P  +    TG  DK V L              
Sbjct: 35  WDSGFCAVNPKFMALICEASGGGAFLVLPLGK----TGRVDKNVPLVC------------ 78
Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373
            H   V  + W P N+ ++AS      +MVW++        P+     P  E +    GH
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI--------PDGGLVLPLREPVITLEGH 130
Query: 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405
           T ++   +W+P    V+ S   DN++ +W + 
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203
           +T    ++VF   K P   P +  C+  ++     T+   ++W    E  +L  SD   +
Sbjct: 66  RTWGGSIWVF---KDPEGAPNESLCTAGVQTEAGVTD---VAW--VSEKGILVASDSGAV 117
Query: 204 CLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262
            LW+I    + +SL   +  K  H+ +V+ ++          S G D  + +WDL   +V
Sbjct: 118 ELWEI---LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV-SGGKDFSVKVWDLSQKAV 173
Query: 263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT-FDSHKEEVF 321
              ++S  AH SEVNC+A  P  + I  +   D  + L+D RK   A    F +      
Sbjct: 174 ---LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT 230
Query: 322 QVGWNPKNETILA 334
            V W+P+ +   A
Sbjct: 231 SVTWHPEKDDTFA 243

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 67  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 60  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 112
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 113 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 167
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 168 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 222
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 223 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 265

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 66  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 118
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 119 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 173
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 174 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 228
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 229 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 271

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 61  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 168
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 223
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 224 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 266

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 62  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 114
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 115 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 169
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 170 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 224
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 225 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 267

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 78  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 130
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 131 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 185
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 186 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 240
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 241 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 283

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 61  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 113
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 114 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 168
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 223
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 224 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 266

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 57  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 109
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 110 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 164
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 165 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 219
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 220 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 262

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 67  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 119
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 120 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 174
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 175 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 229
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 230 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 272

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 64  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L GH+  GY LS  +F  +  +++ S D    LWDI      ++ +    F  H G V  
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           ++       LF S   D    +WD+R        Q+   H+S++N + F P N    ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
           S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 64  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L GH+  GY LS  +F  +  +++ S D    LWDI      ++ +    F  H G V  
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           ++       LF S   D    +WD+R        Q+   H+S++N + F P N    ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
           S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L GH+  GY LS  +F  +  +++ S D    LWDI      ++ +    F  H G V  
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           ++       LF S   D    +WD+R        Q+   H+S++N + F P N    ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
           S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L GH+  GY LS  +F  +  +++ S D    LWDI      ++ +    F  H G V  
Sbjct: 139 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 189
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           ++       LF S   D    +WD+R        Q+   H+S++N + F P N    ATG
Sbjct: 190 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 244
Query: 293 STDKTVKLFDLR 304
           S D T +LFDLR
Sbjct: 245 SDDATCRLFDLR 256

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 174 LRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L GH+  GY LS  +F  +  +++ S D    LWDI      ++ +    F  H G V  
Sbjct: 150 LAGHT--GY-LSCCRFLDDNQIVTSSGDTTCALWDI------ETGQQTTTFTGHTGDVMS 200
Query: 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292
           ++       LF S   D    +WD+R        Q+   H+S++N + F P N    ATG
Sbjct: 201 LSLA-PDTRLFVSGACDASAKLWDVREGMCR---QTFTGHESDINAICFFP-NGNAFATG 255
Query: 293 STDKTVKLFDLR 304
           S D T +LFDLR
Sbjct: 256 SDDATCRLFDLR 267

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 44/285 (15%)
Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H   V+  ++ P   +L A+   SA+  +  +  +  K         +  + GH      
Sbjct: 25  HTKAVSSVKFSPNGEWLAAS---SADKLIKIWGAYDGKF--------EKTISGHKLGISD 73
Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
           ++WS      L+S SDD  + +WD+++       + ++  K H   V    ++ +   L 
Sbjct: 74  VAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSN-LI 125
Query: 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303
            S   D+ + IWD++T    K ++++ AH   V+ + FN     I+++ S D   +++D 
Sbjct: 126 VSGSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT 181
Query: 304 RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363
                     D     V  V ++P  + ILA+  L   L +WD S+              
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK-------------- 226
Query: 364 PELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
            + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNLVYIWNL 269

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
           D  + IWD  T    + +     H   V CL    ++E ++ TGS+D TV+++D+     
Sbjct: 152 DNTIKIWDKNTLECKRIL---TGHTGSVLCL---QYDERVIITGSSDSTVRVWDV-NTGE 204
Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368
            L+T   H E V  + +   N  ++ +C   R + VWD++      +P D       L  
Sbjct: 205 MLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA------SPTDI-----TLRR 250
Query: 369 IHGGHTSKIS--DFSWNPCEDWVISSVAEDNILQIWQMA 405
           +  GH + ++  DF     +D  I S + D  +++W  +
Sbjct: 251 VLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTS 284

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 64  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T      ++++ AH   V+ + FN     I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMC---LKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNMVYIWNL 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           + GH      ++WS      L+S SDD  + +WD+++       + ++  K H   V   
Sbjct: 64  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCC 116
Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            ++ +   L  S   D+ + IWD++T      ++++ AH   V+ + FN     I+++ S
Sbjct: 117 NFNPQSN-LIVSGSFDESVRIWDVKTGMC---LKTLPAHSDPVSAVHFNRDGSLIVSS-S 171
Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D   +++D           D     V  V ++P  + ILA+  L   L +WD S+    
Sbjct: 172 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWDYSK---- 226
Query: 354 QTPEDAEDGPPELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                      + L  + GH ++     ++FS    + W++S  +EDN++ IW +
Sbjct: 227 ----------GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSG-SEDNMVYIWNL 269

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 42/222 (18%)
Query: 174 LRGHSTEGYGLSWSKFKEG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED 232
           L+GH  + Y L +  F  G  L+SGS D  + +WD+      ++ +      + +GV   
Sbjct: 161 LQGHEQDIYSLDY--FPSGDKLVSGSGDRTVRIWDL------RTGQCSLTLSIEDGVTTV 212
Query: 233 VAWHLRHEYL-FGSVGDDQYLLIWDLRTPSVSKPV----QSVVAHQSEVNCLAFNPFNEW 287
                  +Y+  GS+  D+ + +WD  T  + + +    +S   H+  V  + F    + 
Sbjct: 213 AVSPGDGKYIAAGSL--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 288 ILATGSTDKTVKLFDLRKIS-----------TALHTFDSHKEEVFQVGWNPKNETILASC 336
           ++ +GS D++VKL++L+  +           T   T+  HK+ V  V     +E IL S 
Sbjct: 271 VV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SG 328
Query: 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378
              R ++ W            D + G P LL + G   S IS
Sbjct: 329 SKDRGVLFW------------DKKSGNP-LLMLQGHRNSVIS 357

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
           H+ +V  +A NP  +W LAT S D+TVK++DLR++        S  H+  V    ++P  
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 330 ETILAS 335
             +L +
Sbjct: 309 ARLLTT 314

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
           H+ +V  +A NP  +W LAT S D+TVK++DLR++        S  H+  V    ++P  
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 330 ETILAS 335
             +L +
Sbjct: 310 ARLLTT 315

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 284 FNEWILATGSTDKTVKLFDLRKIS-TALHTFD--SHKEEVFQVGWNPKNETILASCCLGR 340
           F++ ILATGSTD+ +KL  ++    T +   D  +HK+ +  V W P + ++LA+     
Sbjct: 22  FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDS 80
Query: 341 RLMVWDLSRIDEEQTPEDAEDGPPE--LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI 398
            + +W           E++ D   E  LL I  GH +++   +W+  + + +++ + D  
Sbjct: 81  TVSIW---------AKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKS 130
Query: 399 LQIWQMAEN 407
           + IW+  E+
Sbjct: 131 VWIWETDES 139

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
           H+ +V  +A NP  +W LAT S D+TVK++DLR++        S  H+  V    ++P  
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 330 ETILAS 335
             +L +
Sbjct: 309 ARLLTT 314

>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 382

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
           H+++V    FNP  +W++AT S D TVKL+DLR I           H++ V    +NP +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 330 ETILASC 336
            T L + 
Sbjct: 262 STKLLTT 268

>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 383

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKN 329
           H+++V    FNP  +W++AT S D TVKL+DLR I           H++ V    +NP +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 330 ETILASC 336
            T L + 
Sbjct: 263 STKLLTT 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.4
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.29
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.22
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.2
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.84
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.66
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.64
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.59
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.56
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.53
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.45
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.45
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.44
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.34
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.25
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.12
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.1
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.91
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.87
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.79
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.7
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.58
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.55
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.52
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.37
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.9
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.85
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.83
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.76
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.73
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.57
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.24
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.0
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.7
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.65
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.6
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.38
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.8
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	94.78
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.61
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.2
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.36
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.13
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.7
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.49
3ott_A	758	Two-component system sensor histidine kinase; beta	92.33
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.41
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	91.41
3ott_A	758	Two-component system sensor histidine kinase; beta	90.86
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.41
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.26
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.14
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	83.93
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	81.59

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.8e-67  Score=495.44  Aligned_cols=409  Identities=66%  Similarity=1.148  Sum_probs=331.7

Q ss_pred             hhhhhhhhhhhhhHHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEE
Q 014433            5 EEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQ   84 (424)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~   84 (424)
                      +|+++++.+++.++|||++||||+|+|||+++++.++||||+++|+|+..+..+.+++.+++++||++.+ ..|+|++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i~~   87 (430)
T 2xyi_A            9 AESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIAS   87 (430)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEEEE
T ss_pred             ccccccchhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEEEE
Confidence            4445667788999999999999999999999999999999999999998877777888999999999988 899999999


Q ss_pred             EECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCC
Q 014433           85 VQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL  164 (424)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~  164 (424)
                      +.+|......+...++++..++..++...++++....+.|.+.|++++|+|+++.+||+|+.+|.|+||++.........
T Consensus        88 ~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~  167 (430)
T 2xyi_A           88 VQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP  167 (430)
T ss_dssp             EEEC--------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT
T ss_pred             EECCCCccccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc
Confidence            99886544444455666666777777778899999999999999999999986679999999999999999864333322


Q ss_pred             CCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEE
Q 014433          165 DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLF  243 (424)
Q Consensus       165 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  243 (424)
                      .....+...+.+|...|++++|+|++..+|++|+.||.|++|++...... ..+.....+..|...|.+++|+|.+..+|
T Consensus       168 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred             cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence            23457788899999999999999998878999999999999999875332 22233456678999999999999777899


Q ss_pred             EEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE
Q 014433          244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV  323 (424)
Q Consensus       244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~  323 (424)
                      ++++.||.|++||+++....+++..+..|...|++++|+|+++++|++|+.||.|++||++....++..+..|...|+++
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i  327 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  327 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence            99999999999999987544567777899999999999999988899999999999999998778899999999999999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +|+|+++.+|++++.||.|+|||++.....+......++++.+++.+.+|...|++++|+|+++++|++++.||.|+||+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            99999988999999999999999988654443333344566889999999999999999999998899999999999999


Q ss_pred             cCCccCCCCCC
Q 014433          404 MAENIYHDEDD  414 (424)
Q Consensus       404 ~~~~~~~~~~~  414 (424)
                      +..+.+.++++
T Consensus       408 ~~~~~~~~~~~  418 (430)
T 2xyi_A          408 MAENVYNDEEP  418 (430)
T ss_dssp             ECHHHHCC---
T ss_pred             cccccccCCCc
Confidence            99998876544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=325.95  Aligned_cols=256  Identities=21%  Similarity=0.287  Sum_probs=215.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCC--cEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP--DLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .+.|...|++++|+|++  .|++|+.||+|+|||+.+.        ....  ...+.+|...|++|+|+|++. +|++|+
T Consensus        78 ~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~--------~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs  146 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER--GILVASDSGAVELWELDEN--------ETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGS  146 (344)
T ss_dssp             EEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTT--------SSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             eeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCC--------CceeEeeccccCCCCCEEEEEECCCCC-EEEEEe
Confidence            45678899999999975  5789999999999999872        1211  234558999999999999988 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCe
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEV  276 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v  276 (424)
                      .||+|++||++++      ..+..+.+|...|++++|++++..+|++++.|++|++||+++++.   ...+  ..+...+
T Consensus       147 ~d~~i~iwd~~~~------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~  217 (344)
T 4gqb_B          147 KDICIKVWDLAQQ------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLP  217 (344)
T ss_dssp             TTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCE
T ss_pred             CCCeEEEEECCCC------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeeccc
Confidence            9999999999876      456778899999999999999988889999999999999998764   4443  3456679


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      ++++|+|++..+|++|+.||+|++||+++ ++++..+.+|...|++++|+|++..+|++|+.|++|+|||++.+      
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------  290 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------  290 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------
Confidence            99999998877899999999999999998 78899999999999999999998778999999999999999763      


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE  412 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~  412 (424)
                              + +..+.+|...|++++|+|+++++|+|+|.|++|++|++.+..+...
T Consensus       291 --------~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p  337 (344)
T 4gqb_B          291 --------E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP  337 (344)
T ss_dssp             --------E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred             --------c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence                    2 4457899999999999999988899999999999999988765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.3e-41  Score=303.91  Aligned_cols=286  Identities=16%  Similarity=0.305  Sum_probs=240.1

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEE-EEE
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQI-IQQ  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  121 (424)
                      +..++.|.|+....      ...++.|+     .+..++++.+.-.                          .... ...
T Consensus        34 ~V~~v~~~~~~~~~------~~~l~tgs-----~D~~v~vW~~~~~--------------------------~~~~~~~l   76 (321)
T 3ow8_A           34 AIWSVAWGTNKKEN------SETVVTGS-----LDDLVKVWKWRDE--------------------------RLDLQWSL   76 (321)
T ss_dssp             CEEEEEEC-------------CEEEEEE-----TTSCEEEEEEETT--------------------------EEEEEEEE
T ss_pred             cEEEEEEecCCCCC------CCEEEEEc-----CCCCEEEEECCCC--------------------------Ceeeeeee
Confidence            47899998875322      13455554     5567899887411                          2222 234


Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|...|.+++|+|++. ++++|+.|++|++||+.+          ......+..|...+.+++|+|++. +|++|+.||
T Consensus        77 ~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~----------~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg  144 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLEN----------GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVG  144 (321)
T ss_dssp             CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT----------TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTS
T ss_pred             ccCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCC----------CCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCC
Confidence            57999999999999886 899999999999999987          455677888999999999999988 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|++|+++.+.      ....+..|...|.+++|+|++. +|++|+.||.|++||+++++.   +..+.+|..+|++++|
T Consensus       145 ~v~i~~~~~~~------~~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~  214 (321)
T 3ow8_A          145 KVNIFGVESGK------KEYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKL---LHTLEGHAMPIRSLTF  214 (321)
T ss_dssp             EEEEEETTTCS------EEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE---EEEECCCSSCCCEEEE
T ss_pred             cEEEEEcCCCc------eeEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE---EEEEcccCCceeEEEE
Confidence            99999998763      3455667888999999999987 567999999999999998653   7778889999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|++. +|++|+.|+.|++||++. ...+..+.+|...|.+++|+|++. +|++++.|++|+|||++++           
T Consensus       215 spd~~-~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~-----------  280 (321)
T 3ow8_A          215 SPDSQ-LLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTR-----------  280 (321)
T ss_dssp             CTTSC-EEEEECTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-----------
T ss_pred             cCCCC-EEEEEcCCCeEEEEECCC-cceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC-----------
Confidence            99998 699999999999999998 678889999999999999999996 7999999999999999874           


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                         .++..+.+|...|++++|+|+++ .|++++.||.|+|||+.
T Consensus       281 ---~~~~~~~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          281 ---TCVHTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ---EEEEEECCCSSCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred             ---EEEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence               66788889999999999999999 68999999999999963

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.4e-41  Score=304.59  Aligned_cols=251  Identities=22%  Similarity=0.339  Sum_probs=218.3

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|++++|+|+++ +||+|+.||.|+|||+.+          ......+..|...|.+++|+|++. +|++|+.|+
T Consensus        10 ~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~   77 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYET----------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDF   77 (304)
T ss_dssp             EEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTS
T ss_pred             cCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCC----------CceeEEeeccCCcEEEEEEeCCCC-EEEEECCCC
Confidence            47999999999999987 899999999999999987          455678889999999999999887 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|++||+.++.      .+..+.+|...|.+++|+|+++ ++++|+.||+|++||++++..  ....+.+|...|++++|
T Consensus        78 ~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           78 RIRVFNYNTGE------KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             EEEEEETTTCC------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTE--EEEEECCCCSCEEEEEE
T ss_pred             EEEEEECCCCc------EEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcc--hhhhhcccCCcEEEEEE
Confidence            99999998763      4567788999999999999987 567999999999999987642  34567789999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC--CCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP--KNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|.+..+|++|+.|++|++||++...........|...+..+.|+|  ++ .+|++++.|+.|+|||++..         
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~---------  218 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTK---------  218 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTT---------
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCC---------
Confidence            9965558999999999999999884444444456778999999987  44 48999999999999999874         


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                           .++..+.+|...|..++|+|+++ +|++++.||.|++||+.++.+
T Consensus       219 -----~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          219 -----SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             -----EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE
T ss_pred             -----ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce
Confidence                 66788899999999999999999 799999999999999988654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-41  Score=314.53  Aligned_cols=255  Identities=18%  Similarity=0.281  Sum_probs=210.6

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ....|...|++++|+|++.  +++++.||+|+|||+.+....      ........+|...|++++|+|++. +|++|+.
T Consensus        89 ~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~------~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~  159 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESL------LVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGK  159 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------------CCCCEEECCCSSCEEEEEECSSSS-EEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeecccccee------EEEeeccCCCCCCEEEEEECCCCC-EEEEEeC
Confidence            3557999999999999874  556788999999999762111      122345668999999999999988 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      ||.|++||++++      ..+..+.+|...|++++|++++..++++++.||.|++||+++++... ......+...++++
T Consensus       160 dg~v~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~v~~v  232 (357)
T 4g56_B          160 DFSVKVWDLSQK------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-RIDFCASDTIPTSV  232 (357)
T ss_dssp             TSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-BCCCTTCCSCEEEE
T ss_pred             CCeEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-eeeeccccccccch
Confidence            999999999876      35667788999999999999988788899999999999999876422 22334567889999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|+|++..+|++|+.|+.|++||+++ .+++..+.+|...|++++|+|++..+||+|+.|++|+|||++.+         
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------  302 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------  302 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------
T ss_pred             hhhhcccceEEEeecccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------
Confidence            99999877899999999999999998 68889999999999999999998778999999999999999864         


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEeCCCcEEEEecCCc
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                           +++ ...+|...|++++|+| ++. +|+|++.||.|++|++...
T Consensus       303 -----~~~-~~~~H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          303 -----EVF-RDLSHRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             -----EEE-EECCCSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC--
T ss_pred             -----cEe-EECCCCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCC
Confidence                 333 3458999999999999 566 7999999999999999664

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-41  Score=315.72  Aligned_cols=246  Identities=20%  Similarity=0.363  Sum_probs=217.9

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++. +||+|+.||+|+|||+..          ......+.+|...|.+++|+|++. +|++|+.|
T Consensus       146 l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~----------~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D  213 (410)
T 1vyh_C          146 LKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQG----------FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRD  213 (410)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTS----------SCEEECCCCCSSCEEEEEECSSSS-EEEEEETT
T ss_pred             EeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC----------CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCC
Confidence            347999999999999886 899999999999999976          455667889999999999999887 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ++|++||++++      ..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++..   ...+..|...|.+++
T Consensus       214 ~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~---~~~~~~h~~~v~~~~  283 (410)
T 1vyh_C          214 KTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKEC---KAELREHRHVVECIS  283 (410)
T ss_dssp             SEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEE
T ss_pred             CeEEEEECCCC------cEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCce---eeEecCCCceEEEEE
Confidence            99999999876      34567788999999999999986 667999999999999998654   667788999999999


Q ss_pred             ecCCC-------------------CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          281 FNPFN-------------------EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       281 ~~~~~-------------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                      |+|++                   ..+|++|+.|+.|++||+++ +.++..+.+|...|.+++|+|++. +|++|+.||.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~  361 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT  361 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence            99963                   23799999999999999998 788899999999999999999996 6899999999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      |++||+...              .++..+.+|...|++++|+|+++ +|++|+.||.|+||++.
T Consensus       362 i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          362 LRVWDYKNK--------------RCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEECCTTS--------------CCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred             EEEEECCCC--------------ceEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence            999999764              45677789999999999999999 68999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=302.90  Aligned_cols=307  Identities=19%  Similarity=0.342  Sum_probs=235.7

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      ++..++|.|+.          ..++.|.     .+..|+++.+.-.                        ..........
T Consensus        18 ~v~~l~~sp~g----------~~las~~-----~D~~i~iw~~~~~------------------------~~~~~~~~~~   58 (345)
T 3fm0_A           18 RCWFLAWNPAG----------TLLASCG-----GDRRIRIWGTEGD------------------------SWICKSVLSE   58 (345)
T ss_dssp             CEEEEEECTTS----------SCEEEEE-----TTSCEEEEEEETT------------------------EEEEEEEECS
T ss_pred             cEEEEEECCCC----------CEEEEEc-----CCCeEEEEEcCCC------------------------cceeeeeecc
Confidence            46788999876          3455554     4567888877311                        0001112224


Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +|.+.|++++|+|++. +||+|+.|+.|+||++..        ........+.+|...|.+++|+|++. +|++|+.|+.
T Consensus        59 ~h~~~v~~~~~sp~g~-~l~s~s~D~~v~iw~~~~--------~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~  128 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQ--------DDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKS  128 (345)
T ss_dssp             SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECC--------C-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccCCcEEEEEECCCCC-EEEEEECCCcEEEEEccC--------CCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCe
Confidence            7999999999999886 899999999999999876        22344667889999999999999887 8999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++||++...   ....+..+..|...|.+++|+|++. +|++++.|+.|++||++.+.. .....+.+|...|++++|+
T Consensus       129 v~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~-~~~~~~~~h~~~v~~l~~s  203 (345)
T 3fm0_A          129 VWVWEVDEED---EYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDW-VCCATLEGHESTVWSLAFD  203 (345)
T ss_dssp             EEEEEECTTS---CEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEEC
T ss_pred             EEEEECCCCC---CeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCE-EEEEEecCCCCceEEEEEC
Confidence            9999997653   2234566778999999999999987 557999999999999987542 2345678899999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCC--------------cceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKIST--------------ALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~--------------~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      |++. +|++|+.|++|++||.+....              ++..+.+ |...|.+++|+|++. +|++++.|+.|++|+.
T Consensus       204 p~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          204 PSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQE  281 (345)
T ss_dssp             TTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEe
Confidence            9998 699999999999999754221              1233443 888999999999996 6999999999999998


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ..........     .......+.+|...|++++|+|+++.+|+|++.||.|++|++.++...
T Consensus       282 ~~~~~~~~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          282 DPNSDPQQPT-----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CTTSCTTSCC-----EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             CCCCCcceee-----EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            7643221100     001122346899999999999998668999999999999999887543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-40  Score=310.61  Aligned_cols=249  Identities=22%  Similarity=0.371  Sum_probs=223.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.++|++++|+|++. +||+|+.||+|+|||+.+          ......+.+|...|.+++|+|++. +|++|+.|
T Consensus       104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~----------~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D  171 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYET----------GDFERTLKGHTDSVQDISFDHSGK-LLASCSAD  171 (410)
T ss_dssp             EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTT----------CCCCEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC----------CcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCC
Confidence            458999999999999886 899999999999999987          455678999999999999999887 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |+|++||+.+.      ..+..+.+|...|.+++|+|++. .+++|+.|+.|++||++++..   +..+.+|...|.+++
T Consensus       172 ~~i~iwd~~~~------~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~---~~~~~~h~~~v~~~~  241 (410)
T 1vyh_C          172 MTIKLWDFQGF------ECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYC---VKTFTGHREWVRMVR  241 (410)
T ss_dssp             SCCCEEETTSS------CEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEE
T ss_pred             CeEEEEeCCCC------ceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE---EEEEeCCCccEEEEE
Confidence            99999999765      34666788999999999999986 556999999999999998764   778889999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC-------------------CcEEEEEECCCe
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN-------------------ETILASCCLGRR  341 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~-------------------~~~l~s~~~dg~  341 (424)
                      |+|++. +|++|+.|++|++||+++ ..+...+..|...|.+++|+|++                   ..+|++|+.|+.
T Consensus       242 ~~~~g~-~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          242 PNQDGT-LIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             ECCCCC-EEEEEcCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            999988 799999999999999998 67888899999999999999963                   247999999999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |++||++.+              .++..+.+|...|++++|+|+++ +|++++.||.|++||+.++.
T Consensus       320 i~iwd~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          320 IKMWDVSTG--------------MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             EEEEETTTT--------------EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSC
T ss_pred             EEEEECCCC--------------ceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence            999999874              66778889999999999999999 58899999999999997764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=299.82  Aligned_cols=253  Identities=17%  Similarity=0.284  Sum_probs=219.6

Q ss_pred             EEEeccCCceeEEEecCCC---CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          119 IQQINHDGEVNRARYMPQN---PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~---~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ....+|.+.|++++|+|++   ..+||+|+.|++|+||++..        ........+.+|...|.+++|++++. +++
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~--------~~~~~~~~l~gh~~~v~~~~~~~~~~-~l~   96 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--------ERLDLQWSLEGHQLGVVSVDISHTLP-IAA   96 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECSSSS-EEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC--------CCeeeeeeeccCCCCEEEEEECCCCC-EEE
Confidence            3345799999999999852   34899999999999999876        22233456889999999999999887 799


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +++.|++|++||+.++      ..+..+..|...+.+++|+|++. .|++++.||.|++||++++..   ...+..|...
T Consensus        97 s~s~D~~i~lWd~~~~------~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~---~~~~~~~~~~  166 (321)
T 3ow8_A           97 SSSLDAHIRLWDLENG------KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKK---EYSLDTRGKF  166 (321)
T ss_dssp             EEETTSEEEEEETTTT------EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSE---EEEEECSSSC
T ss_pred             EEeCCCcEEEEECCCC------CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCce---eEEecCCCce
Confidence            9999999999999876      34566677888999999999987 567999999999999998663   6667788899


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |.+++|+|++. +|++|+.||.|++||+++ ++++..+.+|..+|.+++|+|++. +|++++.|+.|+|||++..     
T Consensus       167 v~~~~~spdg~-~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~-----  238 (321)
T 3ow8_A          167 ILSIAYSPDGK-YLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA-----  238 (321)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC-----
T ss_pred             EEEEEECCCCC-EEEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc-----
Confidence            99999999998 699999999999999998 788899999999999999999996 7999999999999999864     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                               .+...+.+|...|.+++|+|+++ +|++++.|+.|+|||+.++.
T Consensus       239 ---------~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          239 ---------NLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             ---------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE
T ss_pred             ---------ceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCE
Confidence                     55677889999999999999999 69999999999999998764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.6e-39  Score=293.91  Aligned_cols=246  Identities=23%  Similarity=0.348  Sum_probs=211.3

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ...|...|.+++|+|++. +||+|+.|+.|++|++....      ........+.+|...|.++.|++++  .+++++.|
T Consensus        93 ~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d  163 (340)
T 1got_B           93 IPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTRE------GNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGD  163 (340)
T ss_dssp             EECSSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCS------BSCEEEEEEECCSSCEEEEEEEETT--EEEEEETT
T ss_pred             eecCCccEEEEEECCCCC-EEEEEeCCCeEEEEECccCC------CcceeEEEecCCCccEEEEEECCCC--cEEEEECC
Confidence            346889999999999886 89999999999999997621      1123445678999999999999865  49999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +.|++||++++      ..+..+.+|...|.+++|+|++. ++++|+.||.|++||++++..   +..+.+|...|++++
T Consensus       164 ~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~---~~~~~~h~~~v~~v~  233 (340)
T 1got_B          164 TTCALWDIETG------QQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMC---RQTFTGHESDINAIC  233 (340)
T ss_dssp             SCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSE---EEEECCCSSCEEEEE
T ss_pred             CcEEEEECCCC------cEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCee---EEEEcCCcCCEEEEE
Confidence            99999999876      34566788999999999999886 667999999999999998653   677889999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      |+|++. +|++|+.||+|++||++. ...+..+..  +...|++++|+|++. +|++|+.||.|++||+...        
T Consensus       234 ~~p~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~--------  302 (340)
T 1got_B          234 FFPNGN-AFATGSDDATCRLFDLRA-DQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA--------  302 (340)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC--------
T ss_pred             EcCCCC-EEEEEcCCCcEEEEECCC-CcEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccC--------
Confidence            999987 699999999999999997 555555542  335799999999996 8999999999999999764        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                            ..+..+.+|...|.+++|+|++. +|+|++.|+.|+||+
T Consensus       303 ------~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 ------DRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred             ------cEeeEeecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence                  45677889999999999999999 699999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-39  Score=290.84  Aligned_cols=259  Identities=18%  Similarity=0.281  Sum_probs=211.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  198 (424)
                      ..+|.+.|++++|+|+++ +||+|+.|++|+||++..        ........+.+|...|.+++|++.  +. +|++|+
T Consensus         5 ~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~--------~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s   74 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEG--------ETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCS   74 (297)
T ss_dssp             CCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCS--------SCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEE
T ss_pred             ccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCC--------CCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEc
Confidence            447999999999999987 899999999999999975        223557789999999999999864  44 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      .||+|++||++++..    ..+..+..|...|.+++|+|+. ..+|++++.|+.|++||++..... ....+.+|...|+
T Consensus        75 ~D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~  149 (297)
T 2pm7_B           75 YDGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVN  149 (297)
T ss_dssp             TTTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEE
T ss_pred             CCCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccc
Confidence            999999999986531    2344566799999999999972 346789999999999999876422 2355678999999


Q ss_pred             EEEecCCC------------CeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCC--CcEEEEEECCC
Q 014433          278 CLAFNPFN------------EWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKN--ETILASCCLGR  340 (424)
Q Consensus       278 ~v~~~~~~------------~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~--~~~l~s~~~dg  340 (424)
                      +++|+|++            ..+|++|+.|++|++||++....   ....+.+|...|.+++|+|++  ..+|++++.|+
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            99999973            23799999999999999987332   456788999999999999985  45899999999


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEE--cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIH--GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +|+|||++.....           .....+  .+|...|.+++|+|+++ +|++++.|+.|+||+...
T Consensus       230 ~v~iWd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          230 TCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             cEEEEEeCCCCCc-----------cceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence            9999998763210           011122  46778899999999999 689999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-38  Score=287.28  Aligned_cols=285  Identities=18%  Similarity=0.245  Sum_probs=232.4

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      +..+++|.|+.          ..++.|.     .+..++++.+.                          . ...+....
T Consensus        15 ~V~~~~fsp~~----------~~l~s~~-----~dg~v~lWd~~--------------------------~-~~~~~~~~   52 (304)
T 2ynn_A           15 RVKGIDFHPTE----------PWVLTTL-----YSGRVELWNYE--------------------------T-QVEVRSIQ   52 (304)
T ss_dssp             CEEEEEECSSS----------SEEEEEE-----TTSEEEEEETT--------------------------T-TEEEEEEE
T ss_pred             ceEEEEECCCC----------CEEEEEc-----CCCcEEEEECC--------------------------C-CceeEEee
Confidence            35688898876          3555555     44577877541                          0 11223344


Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|..+|.+++|+|++. +|++|+.|+.|++||+.+          ......+.+|...|.+++|+|++. +|++|+.||+
T Consensus        53 ~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~  120 (304)
T 2ynn_A           53 VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNT----------GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLT  120 (304)
T ss_dssp             CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSC
T ss_pred             ccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCC----------CcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCe
Confidence            6889999999999886 899999999999999987          456778999999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |++||++++.     .....+.+|...|.+++|+|.+..+|++|+.|+.|++||++....  .......|...+..++|+
T Consensus       121 v~lWd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~  193 (304)
T 2ynn_A          121 VKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYY  193 (304)
T ss_dssp             EEEEEGGGTT-----EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEEEEC
T ss_pred             EEEEECCCCc-----chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEEEEE
Confidence            9999997642     234567789999999999997667888999999999999987653  223334566889999998


Q ss_pred             C--CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          283 P--FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       283 ~--~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |  ++. +|++|+.|++|++||+++ +.++..+.+|...|.+++|+|+++ +|++|+.||.|+|||+++.          
T Consensus       194 ~~~~~~-~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~----------  260 (304)
T 2ynn_A          194 PLPDKP-YMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY----------  260 (304)
T ss_dssp             CSTTCC-EEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC----------
T ss_pred             EcCCCC-EEEEEcCCCeEEEEeCCC-CccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC----------
Confidence            7  444 799999999999999998 788999999999999999999996 8999999999999999875          


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcEEEEecCC
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNILQIWQMAE  406 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~  406 (424)
                          +++..+..|...+++++|+|++.. ++++|+.| .+.+|++..
T Consensus       261 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          261 ----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             ----CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             ----ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence                567778889899999999998854 37776655 588888765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.4e-39  Score=300.09  Aligned_cols=263  Identities=22%  Similarity=0.348  Sum_probs=214.7

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ....|...|.+++|+|++. +||+|+.|+.|+||++.......   ........+.+|.+.|.++.|+|++...|++|+.
T Consensus       103 ~~~~h~~~v~~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~---~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~  178 (380)
T 3iz6_a          103 AIKLHCPWVMECAFAPNGQ-SVACGGLDSACSIFNLSSQADRD---GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG  178 (380)
T ss_dssp             EEECCCTTCCCCEECTTSS-EEEECCSSSCCEEEECCCCSSCC---CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT
T ss_pred             EEecCCCCEEEEEECCCCC-EEEEeeCCCcEEEEECCCCcccc---CCccceeeccCCCcceEEEEEecCCCCEEEEECC
Confidence            3447999999999999986 89999999999999997632211   1233445678999999999999987767999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |++|++||+.++.....+. .....+|...|.+++|++.+..+|++|+.||.|++||++...  ..+..+.+|...|+++
T Consensus       179 D~~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v  255 (380)
T 3iz6_a          179 DQTCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSV  255 (380)
T ss_dssp             TSCEEEECTTTCCEEEEEC-CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEE
T ss_pred             CCcEEEEEcCCCcEEEEee-cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEE
Confidence            9999999998774321110 011256889999999998666788899999999999998543  2467788999999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +|+|++. +|++|+.||+|++||+++ +.++..+..+.       ..|++++|+|++. +|++|+.||.|++||+...  
T Consensus       256 ~~~p~~~-~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~--  330 (380)
T 3iz6_a          256 KFFPDGQ-RFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLA--  330 (380)
T ss_dssp             EECTTSS-EEEEECSSSCEEEEETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTC--
T ss_pred             EEecCCC-eEEEEcCCCeEEEEECCC-CcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCC--
Confidence            9999998 699999999999999998 66666665433       3489999999996 7999999999999998764  


Q ss_pred             ccCCCCcCCCCCeeeEEE----cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 EQTPEDAEDGPPELLFIH----GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                  +.+..+    .+|...|++++|+|++. +|++|+.|+.|+||++...
T Consensus       331 ------------~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          331 ------------EMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ------------CEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSS
T ss_pred             ------------ceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCC
Confidence                        233333    68999999999999999 7999999999999999765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5e-38  Score=289.96  Aligned_cols=249  Identities=22%  Similarity=0.336  Sum_probs=212.7

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..|...|.+++|+|++. ++|+|+.|+.+++|++.......    .......+.+|...|.+++|+|++. .|++++.||
T Consensus       103 ~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~  176 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDG  176 (354)
T ss_dssp             ECSSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTS
T ss_pred             ecCCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEecccccc----ccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCC
Confidence            45788999999999986 89999999999999987532211    1234567888999999999999887 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +|++||++++      ..+..+.+|...|.+++|+|.. ..+|++|+.||.|++||++++..   +..+..|...|++++
T Consensus       177 ~v~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~~~~h~~~v~~v~  247 (354)
T 2pbi_B          177 TCALWDVESG------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQAFETHESDVNSVR  247 (354)
T ss_dssp             EEEEEETTTC------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEE
T ss_pred             cEEEEeCCCC------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEEecCCCCCeEEEE
Confidence            9999999876      3466788899999999998853 35778999999999999998664   777888999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      |+|++. +|++|+.|++|++||++. ...+..+..+  ...+.+++|+|++. +|++++.|+.|+|||+..+        
T Consensus       248 ~~p~~~-~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~--------  316 (354)
T 2pbi_B          248 YYPSGD-AFASGSDDATCRLYDLRA-DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG--------  316 (354)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC--------
T ss_pred             EeCCCC-EEEEEeCCCeEEEEECCC-CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC--------
Confidence            999987 699999999999999997 4555555433  35789999999996 8999999999999999764        


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                            ..+..+.+|...|++++|+|+++ +|++++.|+.|+||+
T Consensus       317 ------~~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 ------SRVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ------SEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred             ------ceEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence                  45667889999999999999999 699999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-38  Score=292.07  Aligned_cols=251  Identities=14%  Similarity=0.237  Sum_probs=217.3

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++. +|++|+.||+|+|||+.+          ......+..|...|.+++|+|++. +|++|+.|
T Consensus        51 l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d  118 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYT----------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLD  118 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTT----------CCEEEEEECSSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCC----------CCcceEeecCCccEEEEEECCCCC-EEEEEeCC
Confidence            457999999999999886 899999999999999877          455677889999999999999887 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +.|++|++.+...  .......+.+|...|.++.|++++.  +++++.|+.|++||++++..   +..+.+|...|++++
T Consensus       119 ~~v~iw~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~---~~~~~~h~~~v~~~~  191 (340)
T 1got_B          119 NICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQ---TTTFTGHTGDVMSLS  191 (340)
T ss_dssp             CEEEEEETTTCSB--SCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEE
T ss_pred             CeEEEEECccCCC--cceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcE---EEEEcCCCCceEEEE
Confidence            9999999976532  2234556788999999999998864  56999999999999998653   677888999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+|++. +|++|+.|+.|++||+++ +.++..+.+|...|++++|+|++. +|++++.||.|++||++...         
T Consensus       192 ~~~~~~-~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~---------  259 (340)
T 1got_B          192 LAPDTR-LFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQ---------  259 (340)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE---------
T ss_pred             ECCCCC-EEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc---------
Confidence            999887 799999999999999998 688889999999999999999995 79999999999999998742         


Q ss_pred             CCCCeeeEEE--cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          361 DGPPELLFIH--GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       361 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                           .+..+  ..+...|.+++|+|+++ +|++|+.||.|++||+.++.
T Consensus       260 -----~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          260 -----ELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             -----EEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred             -----EEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCc
Confidence                 23332  33445799999999999 79999999999999987653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=297.75  Aligned_cols=262  Identities=17%  Similarity=0.211  Sum_probs=207.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCC-CCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSK-PPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .|...|.+++|+|+|. +|++++ |+++++||.....-. ...............|...|.+++|+|++  .|++|+.||
T Consensus        28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg  103 (344)
T 4gqb_B           28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSG  103 (344)
T ss_dssp             SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTS
T ss_pred             cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCC
Confidence            4677899999999997 777766 677777763210000 00000011122334467889999999974  589999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      +|+|||+.+++.....  .....+|...|++++|+|++. +|++|+.|++|++||+++++.   +..+.+|...|++++|
T Consensus       104 ~v~lWd~~~~~~~~~~--~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~---~~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B          104 AVELWELDENETLIVS--KFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVV---LSSYRAHAAQVTCVAA  177 (344)
T ss_dssp             EEEEEEECTTSSCEEE--EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEE
T ss_pred             EEEEEeccCCCceeEe--eccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcE---EEEEcCcCCceEEEEe
Confidence            9999999887543221  233557999999999999987 567999999999999998664   7888899999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|++..+|++|+.|++|++||+++ ++++..+.  .|...+.+++|+|++..+|++|+.||.|+|||++++         
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------  247 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---------  247 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------
T ss_pred             cCCCCCceeeeccccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---------
Confidence            999987899999999999999998 56666654  456679999999987789999999999999999875         


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                           +++..+.+|...|++++|+|++..+|++++.|++|+|||+.++.+
T Consensus       248 -----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          248 -----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             ------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             -----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence                 556778899999999999999865799999999999999988754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-38  Score=289.88  Aligned_cols=272  Identities=18%  Similarity=0.287  Sum_probs=217.3

Q ss_pred             EEEEEEe-ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          116 VQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       116 ~~~~~~~-~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      +.+...+ +|.+.|++++|+|++..+|++|+.|++|++|++.....     ....+...+.+|...|.+++|+|++. +|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~s~dg~-~l   80 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-----KFGVPVRSFKGHSHIVQDCTLTADGA-YA   80 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-----EEEEEEEEEECCSSCEEEEEECTTSS-EE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-----cccccceEEeCCcccEEEEEECCCCC-EE
Confidence            4444444 69999999999998767999999999999999864111     01234567889999999999999887 79


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ++|+.|++|++||+.++      ..+..+.+|...|.+++|+|++. ++++|+.|+.|++||++..    .+..+.+|..
T Consensus        81 ~s~s~D~~v~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~----~~~~~~~h~~  149 (319)
T 3frx_A           81 LSASWDKTLRLWDVATG------ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ----CLATLLGHND  149 (319)
T ss_dssp             EEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC----EEEEECCCSS
T ss_pred             EEEeCCCEEEEEECCCC------CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC----eEEEEeccCC
Confidence            99999999999999876      34667889999999999999986 5679999999999999753    3677788999


Q ss_pred             CeeEEEecCCCC-----eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          275 EVNCLAFNPFNE-----WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       275 ~v~~v~~~~~~~-----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .|.+++|.|...     .+|++|+.|+.|++||++. ......+.+|...|.+++|+|++. +|++++.||.|+|||+..
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTT
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence            999999998532     3699999999999999998 677888899999999999999996 899999999999999987


Q ss_pred             CCcccCCCCcC---------CC-----------------CCeeeEEEc--------CCCCCcceEEeCCCCCcEEEEEeC
Q 014433          350 IDEEQTPEDAE---------DG-----------------PPELLFIHG--------GHTSKISDFSWNPCEDWVISSVAE  395 (424)
Q Consensus       350 ~~~~~~~~~~~---------~~-----------------~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~s~~~  395 (424)
                      ...........         ++                 +..++..+.        .|...+.+++|+|+++ +|++|+.
T Consensus       228 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~  306 (319)
T 3frx_A          228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYT  306 (319)
T ss_dssp             TEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEET
T ss_pred             CcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-EEEEeec
Confidence            65332211100         00                 001111111        2345688999999999 6899999


Q ss_pred             CCcEEEEecCCc
Q 014433          396 DNILQIWQMAEN  407 (424)
Q Consensus       396 dg~i~vw~~~~~  407 (424)
                      ||.|+||++.++
T Consensus       307 Dg~i~vWd~~t~  318 (319)
T 3frx_A          307 DNVIRVWQVMTA  318 (319)
T ss_dssp             TSCEEEEEEEEC
T ss_pred             CceEEEEEEeec
Confidence            999999998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=294.48  Aligned_cols=274  Identities=22%  Similarity=0.401  Sum_probs=219.0

Q ss_pred             EEEEEEe-ccCC-ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCceeEEEecCCCCc
Q 014433          116 VQIIQQI-NHDG-EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       116 ~~~~~~~-~h~~-~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~  192 (424)
                      +.++..+ +|.+ .|.+++|+|++. +||+|+.|++|+||++..        ....... ...+|...|.+++|+|++. 
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~--------~~~~~~~~~~~~h~~~v~~~~~sp~g~-   74 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEG--------DSWICKSVLSEGHQRTVRKVAWSPCGN-   74 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEET--------TEEEEEEEECSSCSSCEEEEEECTTSS-
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCC--------CcceeeeeeccccCCcEEEEEECCCCC-
Confidence            4445444 6887 999999999986 899999999999999876        1111112 2357999999999999887 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      +|++|+.|+.|++|++....    ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.......+..+..|
T Consensus        75 ~l~s~s~D~~v~iw~~~~~~----~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           75 YLASASFDATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             EEEEEETTSCEEEEEECCC-----EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             EEEEEECCCcEEEEEccCCC----eEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            89999999999999987542    234567788999999999999986 6679999999999999886543445667789


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ...|.+++|+|++. +|++|+.|+.|++||++... .+...+.+|...|.+++|+|++. +|++++.|++|+||+.....
T Consensus       150 ~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          150 TQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             CSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTT
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCC
Confidence            99999999999998 69999999999999998632 24578889999999999999995 79999999999999975543


Q ss_pred             cccCCCCc-CCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          352 EEQTPEDA-EDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       352 ~~~~~~~~-~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ........ ......++..+.+ |...|++++|+|++. .|++++.|+.|++|+...+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTT
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCC
Confidence            32221111 0111234455555 888999999999999 6899999999999998765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-39  Score=298.44  Aligned_cols=259  Identities=15%  Similarity=0.272  Sum_probs=218.4

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|.+.|++++|+|++. +||+|+.||+|+|||+.+          ......+..|...|.+++|+|++. +|++|+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~----------~~~~~~~~~h~~~v~~~~~s~~g~-~las~~  127 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALT----------SQKTHAIKLHCPWVMECAFAPNGQ-SVACGG  127 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTT----------TEEEEEEECCCTTCCCCEECTTSS-EEEECC
T ss_pred             ecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCC----------CccceEEecCCCCEEEEEECCCCC-EEEEee
Confidence            33457999999999999886 799999999999999977          455678889999999999999988 799999


Q ss_pred             CCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-----ecc
Q 014433          199 DDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-----VAH  272 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  272 (424)
                      .|+.|++|++...... ........+.+|.+.|.++.|+|++...|++|+.|++|++||++++..   +..+     .+|
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~~~~h  204 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR---ISIFGSEFPSGH  204 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE---EEEECCCSSSSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE---EEEeecccCCCC
Confidence            9999999999764321 222344567789999999999998777778999999999999998764   4333     568


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ...|.+++|++.+..+|++|+.|++|++||++....++..+.+|...|.+++|+|++. +|++|+.||+|+|||++.+. 
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~-  282 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH-  282 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE-
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc-
Confidence            8999999998855558999999999999999976788999999999999999999996 79999999999999998753 


Q ss_pred             ccCCCCcCCCCCeeeEEEcCC-------CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          353 EQTPEDAEDGPPELLFIHGGH-------TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                                   .+..+..+       ...|++++|+|+++ +|++|+.||.|++||+..+.
T Consensus       283 -------------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          283 -------------QLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             -------------EEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC
T ss_pred             -------------EEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc
Confidence                         23333322       23589999999999 79999999999999987653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6e-39  Score=296.38  Aligned_cols=258  Identities=19%  Similarity=0.245  Sum_probs=207.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTV------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ..|.+.|++++|+|+|. +||+|+.      |+.|++|+......      .........+|...|.+++|+|++.  ++
T Consensus        39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~------~~~~~~~~~~~~~~V~~~~~s~d~~--~l  109 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAP------NESLCTAGVQTEAGVTDVAWVSEKG--IL  109 (357)
T ss_dssp             -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---------CGGGCSEEEECSSCEEEEEEETTTE--EE
T ss_pred             ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCc------ceeEecccCCCCCCEEEEEEcCCCC--EE
Confidence            36999999999999997 8999987      78899999866211      1222345567999999999999764  77


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +++.||+|++||+.+++.....  .....+|...|++++|+|++. +|++|+.||.|++||++++..   +..+..|...
T Consensus       110 ~~s~dg~v~lWd~~~~~~~~~~--~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~---~~~~~~h~~~  183 (357)
T 4g56_B          110 VASDSGAVELWEILEKESLLVN--KFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAV---LKSYNAHSSE  183 (357)
T ss_dssp             EEETTSCEEEC--------CCC--CEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEE---EEEECCCSSC
T ss_pred             EEECCCEEEEeeccccceeEEE--eeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcE---EEEEcCCCCC
Confidence            8889999999999876543221  123457999999999999987 557999999999999998664   7778899999


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      |++++|+|++..++++++.||.|++||+++ ++++..+  ..|...+.+++|+|++..+|++|+.|+.|++||++..   
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---  259 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---  259 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---
T ss_pred             EEEEEEccCCCceeeeeccCCceEEEECCC-CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---
Confidence            999999999877899999999999999998 4554443  4567789999999998789999999999999999875   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                 .++..+.+|...|++++|+|++..+|++++.|++|+|||+.++.+
T Consensus       260 -----------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          260 -----------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             -----------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             -----------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence                       456778899999999999999865799999999999999988743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.9e-38  Score=287.99  Aligned_cols=255  Identities=15%  Similarity=0.244  Sum_probs=217.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++. +||+|+.||+|+|||...          ......+..|...|.+++|+|++. +|++|+.|
T Consensus        60 l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~----------~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d  127 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFT----------TNKEHAVTMPCTWVMACAYAPSGC-AIACGGLD  127 (354)
T ss_dssp             EECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT----------CCEEEEEECSSSCCCEEEECTTSS-EEEEESTT
T ss_pred             ecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCC----------CCcceEEecCCCCEEEEEECCCCC-EEEEeeCC
Confidence            458999999999999886 899999999999999876          345567788999999999999988 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +.+++|++..............+..|...|.+++|+|++.. +++++.|++|++||+++++.   +..+.+|...|.+++
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~---~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQL---LQSFHGHGADVLCLD  203 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEE
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeE---EEEEcCCCCCeEEEE
Confidence            99999999765433333445667789999999999999864 56999999999999998664   778889999999999


Q ss_pred             ecCCC-CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          281 FNPFN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       281 ~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      |+|.. ..+|++|+.||.|++||+++ ++++..+..|...|++++|+|++. +|++++.|++|++||++...        
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~--------  273 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADR--------  273 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--------
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc--------
Confidence            98852 24799999999999999998 688899999999999999999995 79999999999999998742        


Q ss_pred             CCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          360 EDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       360 ~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                            .+..+.  .+...+.+++|+|+++ +|++++.|+.|++||+.++.
T Consensus       274 ------~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          274 ------EVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             ------EEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS
T ss_pred             ------EEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCc
Confidence                  233333  2344688999999999 79999999999999997653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-38  Score=285.66  Aligned_cols=259  Identities=20%  Similarity=0.361  Sum_probs=198.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      |.+.|++++|+|++. +||+|+.|++|+||++.......   ........+.+|...|.+++|+|++. +|++|+.|++|
T Consensus        57 h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v  131 (330)
T 2hes_X           57 HKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSV  131 (330)
T ss_dssp             CCSCEEEEEECTTSS-EEEEEETTSCEEEEEC----------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCE
T ss_pred             ccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEE
Confidence            999999999999886 89999999999999986421100   11234567889999999999999887 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++||++...  .....+..+.+|...|.+++|+|++. +|++++.|++|++||++.+. ...+..+.+|...|.+++|+|
T Consensus       132 ~iwd~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~  207 (330)
T 2hes_X          132 WIWETDESG--EEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDK  207 (330)
T ss_dssp             EEEECCTTC--CCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECC
T ss_pred             EEEeccCCC--CCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecC
Confidence            999995432  12234566788999999999999986 66799999999999998653 124677789999999999999


Q ss_pred             CC-CeEEEEEeCCCcEEEEECCCCC-------CcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          284 FN-EWILATGSTDKTVKLFDLRKIS-------TALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       284 ~~-~~~l~tg~~dg~i~iwd~~~~~-------~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      ++ ..+|++|+.|++|++||++...       .....+.. |...|.+++|++++  +|++++.||.|+||+...+..  
T Consensus       208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~--  283 (330)
T 2hes_X          208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEW--  283 (330)
T ss_dssp             SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEE--
T ss_pred             CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCce--
Confidence            83 2369999999999999997521       23344444 89999999999765  589999999999999865310  


Q ss_pred             CCCCcCCCCCeee-EEEcCCCC-CcceEEeCC--CCCcEEEEEeCCCcEEEEecCC
Q 014433          355 TPEDAEDGPPELL-FIHGGHTS-KISDFSWNP--CEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       355 ~~~~~~~~~~~~~-~~~~~h~~-~v~~~~~~~--~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                                ..+ ....+|.. .|+.++|+|  +++ +|++++.||.|+||++..
T Consensus       284 ----------~~~~~~~~~h~~~~v~~v~~~~~~~~~-~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          284 ----------KVFAKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ----------EEEEEESCTTTTSCEEEEEEC-----C-CEEEEETTSEEEEEEC--
T ss_pred             ----------EEEeccccccccceEEEEEEecCCCce-EEEEecCCCcEEEEEecc
Confidence                      122 23357876 899999999  567 799999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-39  Score=293.44  Aligned_cols=259  Identities=19%  Similarity=0.310  Sum_probs=205.7

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEEeC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~  199 (424)
                      .+|.+.|++++|+|++. +||+|+.|++|+|||+..        +.......+.+|...|.+++|++.  +. +|++|+.
T Consensus        10 ~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~--------~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~   79 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRN--------GGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSY   79 (316)
T ss_dssp             ----CCEEEEEECGGGC-EEEEEETTTEEEEEEEET--------TEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEET
T ss_pred             ccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecC--------CCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEEC
Confidence            47999999999999886 899999999999999976        222345678899999999999863  44 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      |++|++||++++..    .....+.+|...|++++|+|+. ..+|++|+.|+.|++||++..........+..|...|.+
T Consensus        80 D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           80 DRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             TSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             CCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            99999999986532    2345567899999999999983 346789999999999999875421112344678899999


Q ss_pred             EEecCCC----------------CeEEEEEeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCC---CcEEEEEE
Q 014433          279 LAFNPFN----------------EWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKN---ETILASCC  337 (424)
Q Consensus       279 v~~~~~~----------------~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~---~~~l~s~~  337 (424)
                      ++|+|+.                ..+|++|+.|++|++||++...  .++..+.+|...|.+++|+|++   ..+|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            9999973                1369999999999999997532  3567788999999999999986   24899999


Q ss_pred             CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .|++|+||++.......          .....+.+|...|++++|+|+++ +|++++.|+.|+||+..
T Consensus       236 ~D~~v~iw~~~~~~~~~----------~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNT----------WSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTCEEEEEECSSTTCCC----------CBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred             CCCeEEEEEccCccccc----------hhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence            99999999997632100          01122346788999999999999 68999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.3e-38  Score=309.32  Aligned_cols=264  Identities=17%  Similarity=0.275  Sum_probs=217.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++. +||+|+.||+|+|||+..        ........+.+|...|.+++|+|++. +|++++.+
T Consensus        55 ~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~--------~~~~~~~~~~~~~~~v~~v~fs~dg~-~l~~~~~~  124 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQ--------TTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEG  124 (611)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSS--------TTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECC
T ss_pred             ecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCC--------CcceeeEeecccCCceEEEEECCCCC-EEEEEECC
Confidence            347999999999999986 899999999999999865        22333457889999999999999998 68877764


Q ss_pred             ----CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          201 ----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       201 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                          +.|++||...        ....+.+|...|++++|+|+++..|++++.|++|++||.+..+   ....+.+|...|
T Consensus       125 ~~~~~~v~~wd~~~--------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~---~~~~l~~H~~~V  193 (611)
T 1nr0_A          125 RERFGHVFLFDTGT--------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---FKSTFGEHTKFV  193 (611)
T ss_dssp             SSCSEEEEETTTCC--------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---EEEEECCCSSCE
T ss_pred             CCceeEEEEeeCCC--------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---EeeeeccccCce
Confidence                4788888532        2345678999999999999988778899999999999987754   366788999999


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-------CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-------SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ++++|+|++. +||+|+.|++|++||+++ ++++..+.       +|...|.+++|+|++. +|++++.|++|+|||+.+
T Consensus       194 ~~v~fspdg~-~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          194 HSVRYNPDGS-LFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVAT  270 (611)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred             EEEEECCCCC-EEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Confidence            9999999998 799999999999999987 56666663       7999999999999996 799999999999999987


Q ss_pred             CCcccCCCCcC-----------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          350 IDEEQTPEDAE-----------------------------DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       350 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      +..........                             .........+.+|...|++++|+|+++ +|++++.|+.|+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~  349 (611)
T 1nr0_A          271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHIN  349 (611)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEE
Confidence            65432211000                             001134556789999999999999999 799999999999


Q ss_pred             EEecCCccC
Q 014433          401 IWQMAENIY  409 (424)
Q Consensus       401 vw~~~~~~~  409 (424)
                      +||+.++..
T Consensus       350 ~Wd~~~~~~  358 (611)
T 1nr0_A          350 SWDISTGIS  358 (611)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCce
Confidence            999987643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-38  Score=301.27  Aligned_cols=330  Identities=11%  Similarity=0.117  Sum_probs=229.9

Q ss_pred             CCCCccEEEEccCCCCCCCCCCceEEEEEeecC--------------CCCCCCeEEEEEEECCCCCCCcccCCCCCcCCC
Q 014433           40 LEWPSLTVEWLPDREEPPGKDYSVQKMILGTHT--------------SENEPNYLMLAQVQLPLDDSENDARHYDDDRSD  105 (424)
Q Consensus        40 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~--------------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~  105 (424)
                      +..+..+++|+|+...... .-..+.+++|+..              +++.++.|+|+.+.-.                 
T Consensus       132 ~~~~V~sv~w~p~~~~~~~-~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~-----------------  193 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDI-GKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS-----------------  193 (524)
T ss_dssp             CCC--CCCSCEEECCCCSS-CSSEEEEEEEEEC------------------CEEEEEEEEETT-----------------
T ss_pred             CCCceeEEEecccCCCCcc-CcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-----------------
Confidence            4677888999997632100 0123677777732              2334455666665311                 


Q ss_pred             CCCCCCCCCcEEEEE-EeccCCceeEEEecCCC-----CcEEEEEeCCCeEEEEeCCCCCCCCC-CCCCCCCcEEEecCC
Q 014433          106 FGGFGCANGKVQIIQ-QINHDGEVNRARYMPQN-----PFLIATKTVSAEVYVFDYSKHPSKPP-LDGACSPDLRLRGHS  178 (424)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~-----~~~latg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~h~  178 (424)
                             ........ ...|.+.|++++|+|++     ..+||+|+.||+|+|||+........ ......+...+.+|.
T Consensus       194 -------~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~  266 (524)
T 2j04_B          194 -------TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD  266 (524)
T ss_dssp             -------TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred             -------CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence                   00111222 23567999999999962     34899999999999999976321100 000123456788999


Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeE--EEecCCCcEEEEEeCCCeEEEEE
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV--AWHLRHEYLFGSVGDDQYLLIWD  256 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~s~~~dg~i~i~d  256 (424)
                      ..|++++|++. . .|++|+.||+|++||++++..     +...+.+|...|+++  +|+|++..+||+++.|++|+|||
T Consensus       267 ~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          267 SLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             TCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             CCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            99999999984 3 799999999999999986532     234567899999999  56776646889999999999999


Q ss_pred             cCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          257 LRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      +++++.   +..+.+|..  .|.+++|+|++. .|++++.|++|++||++. ..++..+.+|...|++++|+|+++ +|+
T Consensus       340 ~~~~~~---~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V~sva~Sp~g~-~l~  413 (524)
T 2j04_B          340 PKDIAT---TKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRA-AFAVHPLVSRETTITAIGVSRLHP-MVL  413 (524)
T ss_dssp             GGGHHH---HCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTC-TTCCEEEEECSSCEEEEECCSSCC-BCE
T ss_pred             CCCCCc---ccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcc-cccceeeecCCCceEEEEeCCCCC-eEE
Confidence            998653   334445543  588999999988 589999999999999998 667788889999999999999996 689


Q ss_pred             EEECCCeEEEeeCCCCCccc--------------CCCCcCCC----------------CCeeeEEEcCCCCCcceEEeCC
Q 014433          335 SCCLGRRLMVWDLSRIDEEQ--------------TPEDAEDG----------------PPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~----------------~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      +|+.||+|+|||+.......              ......++                ...++..+.+|...|++++|+|
T Consensus       414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred             EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence            99999999999975431110              00000000                1345566788999999999999


Q ss_pred             CCC--cEEEEEeCCCcEEEEecCCc
Q 014433          385 CED--WVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       385 ~~~--~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +++  .++++|+.||.|+||++...
T Consensus       494 ~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          494 TSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             STTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCccHHHHhhccCceEEEEEcccc
Confidence            963  37999999999999998654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=283.02  Aligned_cols=265  Identities=17%  Similarity=0.296  Sum_probs=205.3

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ec-CCCceeEEEecCCCCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RG-HSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+|.+.|++++|+|+   +||+|+.|+.|+||++..        ........+ .+ |...|.+++|+|++. +|++|+
T Consensus        10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~--------~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s   77 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKY--------DDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGS   77 (330)
T ss_dssp             EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSS--------SCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEE
T ss_pred             eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecC--------CCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEe
Confidence            3479999999999985   899999999999999976        112223344 34 999999999999887 899999


Q ss_pred             CCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC-CCCCCeeeeeccCCCe
Q 014433          199 DDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEV  276 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v  276 (424)
                      .|++|++||+...... .....+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. .....+..+.+|...|
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence            9999999999643211 12244566788999999999999986 5679999999999999643 2223456778899999


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCC-CcEEEEEECCCeEEEeeCCCCCccc
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKN-ETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~-~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      ++++|+|++. +|++|+.|++|++||++... .++..+.+|...|.+++|+|++ ..+|++++.|++|+|||++......
T Consensus       157 ~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~  235 (330)
T 2hes_X          157 KHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD  235 (330)
T ss_dssp             EEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred             EEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence            9999999987 79999999999999987622 5778899999999999999983 2479999999999999997642211


Q ss_pred             CCCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          355 TPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .      ....+...+.+ |...|++++|++++  +|++++.||.|+||++.++
T Consensus       236 ~------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          236 Q------QEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             C------EEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETT
T ss_pred             c------ceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC
Confidence            0      00123334444 88999999999765  5889999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-36  Score=274.21  Aligned_cols=260  Identities=22%  Similarity=0.405  Sum_probs=217.4

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ...+|.+.|++++|+|++. +||+|+.||.|+||++..          ......+.+|...|.+++|+|++. +|++|+.
T Consensus        18 ~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~   85 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYD----------GKFEKTISGHKLGISDVAWSSDSN-LLVSASD   85 (312)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------CCEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             EEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCC----------cccchhhccCCCceEEEEEcCCCC-EEEEECC
Confidence            3457999999999999886 899999999999999876          345667889999999999999887 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      ||.|++||++++      ..+..+.+|...|.+++|+|++. ++++++.||.|++||+++++.   +..+..|..+|.++
T Consensus        86 d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~  155 (312)
T 4ery_A           86 DKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC---LKTLPAHSDPVSAV  155 (312)
T ss_dssp             TSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEE
T ss_pred             CCEEEEEECCCC------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE---EEEecCCCCcEEEE
Confidence            999999999876      34566788999999999999986 567999999999999998653   67778899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +|+|++. +|++|+.||.|++||+++ ++.+..+ ..+...+..++|+|++. +|++++.|+.|++||++..........
T Consensus       156 ~~~~~~~-~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          156 HFNRDGS-LIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTT-CCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECS
T ss_pred             EEcCCCC-EEEEEeCCCcEEEEECCC-CceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEEe
Confidence            9999988 699999999999999998 4555554 45667899999999996 799999999999999987542211000


Q ss_pred             -----------------------cCC--------CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecC
Q 014433          359 -----------------------AED--------GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMA  405 (424)
Q Consensus       359 -----------------------~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~vw~~~  405 (424)
                                             ..+        ....++..+.+|...|.+++|+|+++ ++++++  .|+.|++|+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence                                   001        12355677889999999999999999 688776  69999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-36  Score=276.61  Aligned_cols=263  Identities=20%  Similarity=0.301  Sum_probs=204.7

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|...|++++|+|++. ++++|+.|++|+|||+.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~----------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~  137 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENC-FAISSSWDKTLRLWDLRT----------GTTYKRFVGHQSEVYSVAFSPDNR-QILSAG  137 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTT-EEEEEETTSEEEEEETTS----------SCEEEEEECCCSCEEEEEECSSTT-EEEEEE
T ss_pred             chhccCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCC----------CcEEEEEcCCCCcEEEEEECCCCC-EEEEEc
Confidence            34457999999999999886 899999999999999987          456678899999999999999988 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC---------cEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE---------YLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      .|+.|++||+....    .........|...|.+++|+|++.         .+|++++.||.|++||.+.    .....+
T Consensus       138 ~d~~i~~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~  209 (343)
T 2xzm_R          138 AEREIKLWNILGEC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTF  209 (343)
T ss_dssp             TTSCEEEEESSSCE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEE
T ss_pred             CCCEEEEEeccCCc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEE
Confidence            99999999997321    111111236888999999999862         4678999999999999532    235667


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ..|...|++++|+|++. +|++|+.||.|++||++....+...+. +...|.+++|+|++. +++ ++.|+.|++|++..
T Consensus       210 ~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          210 KAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMT  285 (343)
T ss_dssp             ECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSS
T ss_pred             cCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCC
Confidence            88999999999999998 699999999999999976455555553 456799999999985 555 55677899999986


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ......... ...+........+|...|++++|+|+++ .|++|+.||.|++|++.++
T Consensus       286 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          286 QSKAPVCTI-EAEPITKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCSCSEEEC-CCCSGGGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEEE
T ss_pred             CCCCceEEe-ecCcchhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEcc
Confidence            543210000 0000000111237888899999999999 5899999999999998764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-38  Score=294.61  Aligned_cols=265  Identities=18%  Similarity=0.324  Sum_probs=221.8

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.|...|++++|+|++. +||+|+.||.|++|++.....      .......+.+|...|.+++|+|++..+|++++.|
T Consensus        63 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  135 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANN------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN  135 (416)
T ss_dssp             CCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTS------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS
T ss_pred             EEecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccc------cccchhhccCCccceEEEEEcCCCCCEEEEEcCC
Confidence            346889999999999886 799999999999999976211      1235667888999999999999845589999999


Q ss_pred             CcEEEEeCCCCCCCC---cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-----
Q 014433          201 AQICLWDINAAPKNK---SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----  272 (424)
Q Consensus       201 g~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----  272 (424)
                      |.|++||+.+.....   ..........|...|.+++|+|++..+|++++.||.|++||+++++.   +..+..+     
T Consensus       136 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~  212 (416)
T 2pm9_A          136 GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE---VIHLSYTSPNSG  212 (416)
T ss_dssp             SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE---EEEECCCCCSSC
T ss_pred             CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc---ceEEeccccccc
Confidence            999999998775111   11112234578999999999999667888999999999999998653   5555554     


Q ss_pred             -CCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceEec-CCCCCEEEEEEcC-CCCcEEEEEECCCeEEEee
Q 014433          273 -QSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFD-SHKEEVFQVGWNP-KNETILASCCLGRRLMVWD  346 (424)
Q Consensus       273 -~~~v~~v~~~~~~~~~l~tg~~dg---~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp-~~~~~l~s~~~dg~i~iwd  346 (424)
                       ...|++++|+|++..+|++++.|+   .|++||+++...++..+. +|...|.+++|+| ++ .+|++++.||.|++||
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEEC
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEee
Confidence             789999999999877899999998   999999998667888888 8999999999999 66 5799999999999999


Q ss_pred             CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ++..              ..+..+.+|...|.+++|+|+++.+|++++.|+.|++|++......
T Consensus       292 ~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          292 PESA--------------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSSC--------------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             CCCC--------------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            9874              5577788999999999999999448999999999999999887544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=277.82  Aligned_cols=308  Identities=16%  Similarity=0.287  Sum_probs=234.7

Q ss_pred             CCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEE
Q 014433           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (424)
Q Consensus        41 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (424)
                      .-+..+++|.|+..         ..++.|+.  ...+..++++.+.                          .++.....
T Consensus        18 ~~~v~~~~~~p~~~---------~l~~~~s~--~~~d~~v~iw~~~--------------------------~~~~~~~~   60 (357)
T 3i2n_A           18 NYTVFDCKWVPCSA---------KFVTMGNF--ARGTGVIQLYEIQ--------------------------HGDLKLLR   60 (357)
T ss_dssp             SSCEEEEEECTTSS---------EEEEEEC----CCCEEEEEEEEC--------------------------SSSEEEEE
T ss_pred             CCceEEEEEcCCCc---------eEEEecCc--cCCCcEEEEEeCC--------------------------CCccccee
Confidence            34578999999752         22333331  1235678888773                          22344556


Q ss_pred             EeccCCceeEEEecCCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe------cCCCCc
Q 014433          121 QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW------SKFKEG  192 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~--~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~~~  192 (424)
                      ...|...|++++|+|++  ..+|++|+.||.|++||+...         ..+...+.+|...|.+++|      +|++. 
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-  130 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAP---------EMPVYSVKGHKEIINAIDGIGGLGIGEGAP-  130 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSC---------SSCSEEECCCSSCEEEEEEESGGGCC-CCC-
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCC---------CccEEEEEecccceEEEeeccccccCCCcc-
Confidence            67899999999999983  348999999999999999871         1257788999999999955      67676 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC----ccEeeEE----EecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE----GVVEDVA----WHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      +|++++.||.|++||++....     ....+..|.    ..+.+++    |+|++. ++++++.||.|++||++++..  
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--  202 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDD-----PVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL--  202 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSS-----CSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE--
T ss_pred             EEEEEeCCCeEEEEeCCCCCC-----cceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce--
Confidence            799999999999999987642     223333333    3788988    677776 667999999999999998663  


Q ss_pred             CeeeeeccCCCeeEEEecC---CCCeEEEEEeCCCcEEEEECCCCCCcceEec-----CCCCCEEEEEEcCCCCcEEEEE
Q 014433          265 PVQSVVAHQSEVNCLAFNP---FNEWILATGSTDKTVKLFDLRKISTALHTFD-----SHKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~---~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~l~s~  336 (424)
                        .....|...|.+++|+|   ++. +|++|+.||.|++||+++ ..++..+.     .|...|++++|+|+++.+|+++
T Consensus       203 --~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          203 --RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             --EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             --eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence              34467889999999999   777 689999999999999987 45555554     8999999999999986689999


Q ss_pred             ECCCeEEEeeCCCCCcccCCCCcC-----CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          337 CLGRRLMVWDLSRIDEEQTPEDAE-----DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       337 ~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +.||.|++||++............     .+...++..+.+|...|++++|+|++++++++++.||.|+||++.+.
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            999999999998765432111100     11225678889999999999999999965558999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.1e-37  Score=279.61  Aligned_cols=275  Identities=19%  Similarity=0.309  Sum_probs=212.3

Q ss_pred             CcEEEEEE-eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433          114 GKVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       114 ~~~~~~~~-~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      .++.+..+ .+|.+.|++|+|+|+++.+||||+.||+|+|||+......     ...+...+.+|...|.+++|+|++. 
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~-----~~~~~~~l~~h~~~V~~~~~s~dg~-   99 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN-----YGIPQRALRGHSHFVSDVVISSDGQ-   99 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC-----SEEEEEEECCCSSCEEEEEECTTSS-
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc-----cceeeEEEeCCCCCEEEEEECCCCC-
Confidence            34555544 4799999999999987679999999999999999863211     1234567889999999999999887 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCC-------------------------------------cccceeeeecCCccEeeEEE
Q 014433          193 HLLSGSDDAQICLWDINAAPKNK-------------------------------------SLEAMQIFKVHEGVVEDVAW  235 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~  235 (424)
                      +|++|+.|+.|++|+........                                     .........+|...+..++|
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            79999999999999987642110                                     00112223457888999999


Q ss_pred             ecCCC-cEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec
Q 014433          236 HLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       236 ~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  314 (424)
                      ++++. .++++++.|+.|++||+++...   +..+.+|...|++++|+|++. +|++|+.||.|++||+++ ..++..+.
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~-~~~~~~~~  254 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKL---KTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE-GKHLYTLD  254 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEE---EEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTT-TEEEEEEE
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCce---eeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEecc-Cceeeeec
Confidence            88753 4677899999999999998653   677788999999999999998 699999999999999998 67777776


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      . ...|.+++|+|++.  +++++.|+.|+|||++.........     .........+|...|++++|+|+++ +|++|+
T Consensus       255 ~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs  325 (340)
T 4aow_A          255 G-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELK-----QEVISTSSKAEPPQCTSLAWSADGQ-TLFAGY  325 (340)
T ss_dssp             C-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEEC-----CC-------CCCCCEEEEEECTTSS-EEEEEE
T ss_pred             C-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEecc-----ccceeeeccCCCCCEEEEEECCCCC-EEEEEe
Confidence            5 56899999999874  5577789999999998653221111     1122334467889999999999999 699999


Q ss_pred             CCCcEEEEecCCcc
Q 014433          395 EDNILQIWQMAENI  408 (424)
Q Consensus       395 ~dg~i~vw~~~~~~  408 (424)
                      .||.|+|||+++|.
T Consensus       326 ~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          326 TDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTSCEEEEEEEC--
T ss_pred             CCCEEEEEeCCCcC
Confidence            99999999998863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.5e-38  Score=296.43  Aligned_cols=269  Identities=17%  Similarity=0.251  Sum_probs=204.9

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ...|...|++|+|+|.++.+||+|+.||.|+|||+..        ........+.+|.+.|++|+|+|.+..+|++|+.|
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~--------~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI--------KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSC--------CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC--------CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            3468999999999998777999999999999999986        22333445668999999999999655589999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |+|++||+++..    +........+...+.+++|+|++. +|++|+.||.|++||++...    +..+.+|...|++++
T Consensus       187 ~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~----~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          187 GTTRLQDFKGNI----LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVA  257 (435)
T ss_dssp             SCEEEEETTSCE----EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB----CCCSBCCSSCEEEEE
T ss_pred             CEEEEeeccCCc----eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce----eEEEecccceEEeee
Confidence            999999997541    111222223445688999999986 66799999999999997533    456678999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      |+|++..+|++|+.|+.|++||+++...  .+....+|...|++++|+|++. +|++++.||.|+|||++.+........
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEec
Confidence            9999988899999999999999987432  2333467999999999999996 799999999999999987543210000


Q ss_pred             ---------------------------cC----------C---------CCCeeeEE-EcCCCCCcceE-EeCCCCCcEE
Q 014433          359 ---------------------------AE----------D---------GPPELLFI-HGGHTSKISDF-SWNPCEDWVI  390 (424)
Q Consensus       359 ---------------------------~~----------~---------~~~~~~~~-~~~h~~~v~~~-~~~~~~~~~l  390 (424)
                                                 ..          +         ....++.. ..+|...|.++ +|+|++. +|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~l  415 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TL  415 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EE
Confidence                                       00          0         01122223 24677788887 6999999 57


Q ss_pred             EEEeCCCcEEEEecCCccC
Q 014433          391 SSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       391 ~s~~~dg~i~vw~~~~~~~  409 (424)
                      ++|+ |+.|+||++.++..
T Consensus       416 asg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          416 ASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEC-SSEEEECCCC----
T ss_pred             EEEc-CCcEEEEECCcCee
Confidence            7765 88999999988754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=297.93  Aligned_cols=337  Identities=14%  Similarity=0.253  Sum_probs=243.4

Q ss_pred             HHhHHhcChhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCC
Q 014433           21 YKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYD  100 (424)
Q Consensus        21 ~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~  100 (424)
                      .++|..........+......-+..++.|.|+.          ..++.|+     .+..++++.+.-.            
T Consensus        47 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~-----~dg~v~vw~~~~~------------   99 (416)
T 2pm9_A           47 LELWSLLAADSEKPIASLQVDSKFNDLDWSHNN----------KIIAGAL-----DNGSLELYSTNEA------------   99 (416)
T ss_dssp             CEEEESSSGGGCSCSCCCCCSSCEEEEEECSSS----------SCEEEEE-----SSSCEEEECCSST------------
T ss_pred             EEEEEccCCCCCcEEEEEecCCceEEEEECCCC----------CeEEEEc-----cCCeEEEeecccc------------
Confidence            455544433222223333344567788998865          3455555     2346777655211            


Q ss_pred             CcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc
Q 014433          101 DDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE  180 (424)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~  180 (424)
                                 ..+.-.+.....|.+.|++++|+|++..+|++|+.||.|++||+.......... .......+.+|...
T Consensus       100 -----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  167 (416)
T 2pm9_A          100 -----------NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-TPLTPGQSMSSVDE  167 (416)
T ss_dssp             -----------TSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-CCBCCCCSCCSSCC
T ss_pred             -----------cccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-cccccccccCCCCC
Confidence                       001112334457999999999999855689999999999999998732110000 01111234679999


Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC------CccEeeEEEecCCCcEEEEEeCCC---e
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH------EGVVEDVAWHLRHEYLFGSVGDDQ---Y  251 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~s~~~dg---~  251 (424)
                      |.+++|+|++..+|++++.||.|++||+++..      .+..+..+      ...|.+++|+|++..++++++.|+   .
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKK------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTE------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            99999999866689999999999999998763      23334444      789999999999877888999998   9


Q ss_pred             EEEEEcCCCCCCCCeeeee-ccCCCeeEEEecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433          252 LLIWDLRTPSVSKPVQSVV-AHQSEVNCLAFNP-FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~-~~~~~v~~v~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      |++||+++...  ++..+. .|...|++++|+| ++. +|++++.||.|++||+++ ++++..+..|...|.+++|+|++
T Consensus       242 i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          242 ILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             CCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEEECTTC
T ss_pred             EEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEEECCCC
Confidence            99999998642  455666 7999999999999 665 799999999999999998 68889999999999999999998


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCC---cCCCCCeeeEEEcC------------------CCCCcceEEeCCCCCc
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPED---AEDGPPELLFIHGG------------------HTSKISDFSWNPCEDW  388 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~  388 (424)
                      +.+|++++.|+.|+||++...........   ....++..++...+                  |...+..++|+|+|+ 
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-  396 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-  396 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-
Confidence            66899999999999999988765443211   11112222233222                  677888999999999 


Q ss_pred             EEEEEeCCCcEEEEecCCc
Q 014433          389 VISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       389 ~l~s~~~dg~i~vw~~~~~  407 (424)
                      +|++++.|+.|+||++.++
T Consensus       397 ~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          397 LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             EECBCTTSSCBCCBCCCCC
T ss_pred             EEEEeCCCCeEEEEEeccC
Confidence            7999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-36  Score=283.50  Aligned_cols=263  Identities=20%  Similarity=0.327  Sum_probs=207.2

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC------------------
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH------------------  177 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h------------------  177 (424)
                      .++.+.+.|.+.|++++|+|++. +||+|+ ++.++||++...          .....+..|                  
T Consensus        55 ~~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g----------~~~~~l~~~~~~~~~~~~~~~~~~~~~  122 (393)
T 1erj_A           55 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDG----------SLVARLSDDSAANKDPENLNTSSSPSS  122 (393)
T ss_dssp             EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTC----------CEEEEECC-----------------CC
T ss_pred             ceeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCC----------CEEEEecCccccccccccccccccCCC
Confidence            44566678999999999999997 788876 689999998762          222333322                  


Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEc
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL  257 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~  257 (424)
                      ...|.+++|+|++. +|++|+.||.|++||+.++      +.+..+.+|...|.+++|+|++. .|++++.|+.|++||+
T Consensus       123 ~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          123 DLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             CCBEEEEEECTTSS-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEET
T ss_pred             ceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCC------cEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEEC
Confidence            23589999999988 7999999999999999765      34566788999999999999987 4569999999999999


Q ss_pred             CCCCCCCCeeeeeccCCCeeEEEecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEe-------cCCCCCEEEEEEcCCC
Q 014433          258 RTPSVSKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTDKTVKLFDLRKISTALHTF-------DSHKEEVFQVGWNPKN  329 (424)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~~h~~~v~~~~~sp~~  329 (424)
                      +++..   ...+ .+...+.+++|+| ++. +|++|+.||.|++||+++ +..+..+       .+|...|.+++|+|++
T Consensus       195 ~~~~~---~~~~-~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g  268 (393)
T 1erj_A          195 RTGQC---SLTL-SIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDG  268 (393)
T ss_dssp             TTTEE---EEEE-ECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             CCCee---EEEE-EcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence            98653   3333 3567899999999 555 799999999999999997 5555555       5789999999999999


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      . +|++++.|+.|++||++..........  .....+...+.+|...|.+++|+|++. +|++++.|+.|++||+.++.
T Consensus       269 ~-~l~s~s~d~~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          269 Q-SVVSGSLDRSVKLWNLQNANNKSDSKT--PNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             S-EEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC
T ss_pred             C-EEEEEeCCCEEEEEECCCCCCcccccC--CCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe
Confidence            6 799999999999999987543221110  011245667789999999999999999 68999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-36  Score=283.68  Aligned_cols=245  Identities=22%  Similarity=0.358  Sum_probs=205.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .+...|++++|+|++. +||+|+.||.|+|||+.+          ......+.+|...|.+++|+|++. +|++|+.|++
T Consensus       121 ~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~  188 (393)
T 1erj_A          121 SSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIEN----------RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRT  188 (393)
T ss_dssp             CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred             CCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCC----------CcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCc
Confidence            3555799999999986 899999999999999987          455677889999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-------eccCCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-------VAHQSE  275 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~  275 (424)
                      |++||++++.      ....+. +...+.+++|+|.+..+|++|+.||.|++||++++..   +..+       .+|...
T Consensus       189 v~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~~h~~~  258 (393)
T 1erj_A          189 VRIWDLRTGQ------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL---VERLDSENESGTGHKDS  258 (393)
T ss_dssp             EEEEETTTTE------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE---EEEEC------CCCSSC
T ss_pred             EEEEECCCCe------eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---EEeecccccCCCCCCCC
Confidence            9999998763      223333 5678999999995455778999999999999988653   3333       568899


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-----------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-----------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      |++++|+|++. +|++|+.|+.|++||++...           .+...+.+|...|.+++|+|++. +|++|+.|+.|++
T Consensus       259 v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~i  336 (393)
T 1erj_A          259 VYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLF  336 (393)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred             EEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEE
Confidence            99999999998 69999999999999998632           23556778999999999999996 7999999999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC------CCCcEEEEEeCCCcEEEEecCC
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP------CEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ||+..+              ..+..+.+|...|.+++|++      ++. +|+||+.||.|+||++..
T Consensus       337 wd~~~~--------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          337 WDKKSG--------------NPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EETTTC--------------CEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred             EECCCC--------------eEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECcccc
Confidence            999875              45677889999999999986      566 799999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-35  Score=292.50  Aligned_cols=239  Identities=26%  Similarity=0.445  Sum_probs=210.9

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ....|...|.+++|+|++. +||+|+.||.|++|+...           .....+.+|...|.+++|+|++. +|++++.
T Consensus       339 ~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~  405 (577)
T 2ymu_A          339 TLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVRGVAFSPDGQ-TIASASD  405 (577)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTC-----------CEEEEEECCSSCEEEEEECTTSS-CEEEEET
T ss_pred             EEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCC-----------CEEEEecCCCCCeEEEEECCCCC-EEEEEeC
Confidence            3457899999999999986 899999999999999654           45677889999999999999988 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |+.|++||...       +.+..+.+|...|++++|+|++. ++++++.|+.|++||+..    +.+..+..|...|+++
T Consensus       406 d~~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~  473 (577)
T 2ymu_A          406 DKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGV  473 (577)
T ss_dssp             TSEEEEECTTC-------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCC-------CEEEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEE
Confidence            99999999643       24566788999999999999986 567999999999999743    2367778899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|+|++. +|++++.|+.|++||..  ++++..+.+|...|++++|+|+++ +|++++.||.|+|||...          
T Consensus       474 ~~spd~~-~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~----------  539 (577)
T 2ymu_A          474 AFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG----------  539 (577)
T ss_dssp             EECTTSC-EEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTS----------
T ss_pred             EEcCCCC-EEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCC----------
Confidence            9999998 69999999999999964  578899999999999999999996 799999999999999642          


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                           +++..+.+|...|++++|+|+++ +|+|++.|++|++||
T Consensus       540 -----~~~~~~~~h~~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          540 -----QLLQTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLWN  577 (577)
T ss_dssp             -----CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred             -----CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence                 56778899999999999999999 588999999999997

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-36  Score=279.20  Aligned_cols=251  Identities=19%  Similarity=0.287  Sum_probs=206.1

Q ss_pred             ccCCceeEEEecCCCC---cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC-CCCceEEEEe
Q 014433          123 NHDGEVNRARYMPQNP---FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGS  198 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~---~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~  198 (424)
                      .|.+.|++++|+|++.   .+|++|+.||.|++||+.+          ......+.+|...|.+++|+| ++. +|++|+
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~  135 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----------MQCIKHYVGHGNAINELKFHPRDPN-LLLSVS  135 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT----------CCEEEEEESCCSCEEEEEECSSCTT-EEEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh----------ceEeeeecCCCCcEEEEEECCCCCC-EEEEEe
Confidence            3789999999999832   4899999999999999987          456778889999999999999 555 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeee---ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC------------
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------  263 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------  263 (424)
                      .||.|++||++++.      .+..+   ..|...|.+++|+|++. .|++++.||.|++||++++...            
T Consensus       136 ~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (366)
T 3k26_A          136 KDHALRLWNIQTDT------LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN  208 (366)
T ss_dssp             TTSCEEEEETTTTE------EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred             CCCeEEEEEeecCe------EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCC
Confidence            99999999998662      33344   57999999999999886 5669999999999999875321            


Q ss_pred             -------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceEecCCC
Q 014433          264 -------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHK  317 (424)
Q Consensus       264 -------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------~~~~~~~h~  317 (424)
                                   ........|...|.+++|+  +. +|++++.||.|++||+++...             .+..+..|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             GCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             CCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                         0112223489999999999  55 799999999999999987432             367778899


Q ss_pred             CCEEEEEEcCC--CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC--CCCcceEEeCCCCCcEEEEE
Q 014433          318 EEVFQVGWNPK--NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH--TSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       318 ~~v~~~~~sp~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~  393 (424)
                      ..|++++|+|+  +. +|++++.||.|++||+..+....          .....+.+|  ...|++++|+|+++ +|+++
T Consensus       286 ~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~  353 (366)
T 3k26_A          286 CDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPHK----------AKCTTLTHHKCGAAIRQTSFSRDSS-ILIAV  353 (366)
T ss_dssp             CCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGGG----------CEEEEECCTTCCSCEEEEEECTTSS-EEEEE
T ss_pred             CcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCcc----------ccceEEcccccCCceEEEEeCCCCC-eEEEE
Confidence            99999999999  75 89999999999999998764321          244566777  78999999999999 79999


Q ss_pred             eCCCcEEEEecCC
Q 014433          394 AEDNILQIWQMAE  406 (424)
Q Consensus       394 ~~dg~i~vw~~~~  406 (424)
                      +.||.|++||+.+
T Consensus       354 ~~dg~i~iwd~~~  366 (366)
T 3k26_A          354 CDDASIWRWDRLR  366 (366)
T ss_dssp             ETTSEEEEEEC--
T ss_pred             eCCCEEEEEEecC
Confidence            9999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-35  Score=273.37  Aligned_cols=257  Identities=18%  Similarity=0.272  Sum_probs=203.3

Q ss_pred             EeccCCceeEEEe-----cC-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          121 QINHDGEVNRARY-----MP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       121 ~~~h~~~v~~~~~-----~p-~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      ..+|.+.|++++|     ++ +++ +||+|+.|++|+|||+.......   ....+...+.+|...|.+++|+|++. +|
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~---~~~~~~~~l~~h~~~V~~~~~~~~~~-~l   91 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNG---YFGIPHKALTGHNHFVSDLALSQENC-FA   91 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSS---BSEEEEEEECCCSSCEEEEEECSSTT-EE
T ss_pred             eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccc---ccccccchhccCCCceEEEEECCCCC-EE
Confidence            3479999999999     76 554 89999999999999987521110   01234567889999999999999887 79


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ++|+.|++|++||++++      ..+..+.+|...|.+++|+|++. .|++++.|+.|++||++.... ........|..
T Consensus        92 ~s~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~  163 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTG------TTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECK-FSSAEKENHSD  163 (343)
T ss_dssp             EEEETTSEEEEEETTSS------CEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEE-EECCTTTSCSS
T ss_pred             EEEcCCCcEEEEECCCC------cEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCce-eeeecccCCCc
Confidence            99999999999999876      34566788999999999999987 556999999999999974221 00111136888


Q ss_pred             CeeEEEecCCCC---------eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          275 EVNCLAFNPFNE---------WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       275 ~v~~v~~~~~~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      .|.+++|+|++.         .+|++|+.||.|++||.+  ......+.+|...|.+++|+|++. +|++|+.||.|+||
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIW  240 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEE
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCC-EEEEEcCCCeEEEE
Confidence            999999999862         379999999999999954  467778889999999999999996 79999999999999


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      |+.....             ....+ .+...|.+++|+|++. ++++ +.|+.|++|++.++..
T Consensus       241 d~~~~~~-------------~~~~~-~~~~~v~~v~~sp~~~-~la~-~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          241 DILNLTY-------------PQREF-DAGSTINQIAFNPKLQ-WVAV-GTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             ESSCCSS-------------CSEEE-ECSSCEEEEEECSSSC-EEEE-EESSCEEEEESSSCCS
T ss_pred             ECCCCcc-------------cceee-cCCCcEEEEEECCCCC-EEEE-ECCCCEEEEEeCCCCC
Confidence            9954321             12222 2344699999999998 5655 5588899999987643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.9e-36  Score=299.39  Aligned_cols=269  Identities=21%  Similarity=0.274  Sum_probs=211.6

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++..+|++|+.||+|+||++......     .......+.+|...|.+++|+|++. +|++|+.|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-----~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~D  451 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-----YGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWD  451 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-----SCEEEEEEECCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-----cccccceecCCCCcEEEEEECCCCC-EEEEEeCC
Confidence            45799999999999988779999999999999999762111     1223457889999999999999887 89999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |+|++||+.++      .....+.+|...|.+++|+|++.. |++++.|++|++||+.............+|...|.+++
T Consensus       452 g~v~vwd~~~~------~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  524 (694)
T 3dm0_A          452 GELRLWDLAAG------VSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR  524 (694)
T ss_dssp             SEEEEEETTTT------EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred             CcEEEEECCCC------cceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE
Confidence            99999999876      345667889999999999999875 46999999999999865321000111246888999999


Q ss_pred             ecCCCC-eEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          281 FNPFNE-WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       281 ~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      |+|++. .+|++|+.|++|++||+++ .+....+.+|...|++++|+|++. +|++++.||.|+|||++.+.........
T Consensus       525 ~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~  602 (694)
T 3dm0_A          525 FSPNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEAN  602 (694)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred             EeCCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecCC
Confidence            999862 4799999999999999998 678889999999999999999995 8999999999999999876543322111


Q ss_pred             C---------C-----------------CCCeeeEEEcC-------------------CCCCcceEEeCCCCCcEEEEEe
Q 014433          360 E---------D-----------------GPPELLFIHGG-------------------HTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       360 ~---------~-----------------~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      .         +                 ....++..+..                   +...+++++|+|+++ +|++|+
T Consensus       603 ~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs  681 (694)
T 3dm0_A          603 SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGY  681 (694)
T ss_dssp             SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-EEEEEE
T ss_pred             CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEc
Confidence            0         0                 00111111211                   111367899999999 699999


Q ss_pred             CCCcEEEEecC
Q 014433          395 EDNILQIWQMA  405 (424)
Q Consensus       395 ~dg~i~vw~~~  405 (424)
                      .||.|+||++.
T Consensus       682 ~Dg~i~iW~i~  692 (694)
T 3dm0_A          682 TDGVIRVWGIG  692 (694)
T ss_dssp             TTSEEEEEEC-
T ss_pred             CCCeEEEEecc
Confidence            99999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=272.13  Aligned_cols=269  Identities=19%  Similarity=0.245  Sum_probs=215.4

Q ss_pred             eccCCceeEEEecC-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-----------ecCCCceeEEEecCC
Q 014433          122 INHDGEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-----------RGHSTEGYGLSWSKF  189 (424)
Q Consensus       122 ~~h~~~v~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~l~~~~~  189 (424)
                      ..|.+.|++++|+| ++. +||+|+.||.|+||++....        .......           .+|...|.+++|+|+
T Consensus        40 ~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSS--------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             CCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCS--------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             eccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCc--------ccceEeccccccccccccccCCCcEEEEEEccC
Confidence            35999999999999 775 89999999999999998721        1212111           259999999999996


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC--cEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      +..+|++++.||.|++||+.++.      ....+. +...+.++.|++.+.  .++++++.||.|++||++++..   +.
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~  180 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQ------TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC---SH  180 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTE------EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---CE
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCc------cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---ee
Confidence            55589999999999999998752      233333 678899999998654  3778999999999999998664   67


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe---------------cCCCCCEEEEEEcCCCCcE
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF---------------DSHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---------------~~h~~~v~~~~~sp~~~~~  332 (424)
                      .+..|...|++++|+|++.++|++|+.||.|++||++....++..+               ..|...|.+++|+|++. +
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  259 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-H  259 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-E
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-E
Confidence            7788999999999999998789999999999999999855455555               57889999999999985 7


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcC---------------------------------CCCCeeeEEEcCCCCCcce
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAE---------------------------------DGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~  379 (424)
                      |++++.||.|++||+..+..........                                 ......+..+.+|...|++
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  339 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDC  339 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEE
Confidence            9999999999999998865432211100                                 0123556777899999999


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                      ++|+|+++ +|++++.||.|++|++.+.....
T Consensus       340 ~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          340 CVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEEETTTT-EEEEEETTSCEEEEEECC-----
T ss_pred             EEEcCCCC-EEEEECCCCeEEEEeCCCCCccC
Confidence            99999999 79999999999999999875543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-35  Score=270.80  Aligned_cols=275  Identities=19%  Similarity=0.321  Sum_probs=217.8

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEEeC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGSD  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~  199 (424)
                      .+|.+.|++++|+|++. +||+|+.||.|+||++....      ........+.+|...|.+++|+|.  +. +|++|+.
T Consensus         8 ~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~   79 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDT------SNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASY   79 (351)
T ss_dssp             CCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSS------CCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEET
T ss_pred             cccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCC------CcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcC
Confidence            47999999999999886 89999999999999998621      112345667899999999999994  55 8999999


Q ss_pred             CCcEEEEeCCCCCCC---CcccceeeeecCCccEeeEEEecC--CCcEEEEEeCCCeEEEEEcCCCCCCCCeee------
Q 014433          200 DAQICLWDINAAPKN---KSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKPVQS------  268 (424)
Q Consensus       200 dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~------  268 (424)
                      ||.|++||++.+...   .....+..+..|...|.+++|+|+  +. ++++++.||.|++||++++.....+..      
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccc
Confidence            999999999876432   122446667789999999999998  65 667999999999999998765333221      


Q ss_pred             ----eeccCCCeeEEEecCC---CCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCC---cEEEEE
Q 014433          269 ----VVAHQSEVNCLAFNPF---NEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNE---TILASC  336 (424)
Q Consensus       269 ----~~~~~~~v~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~---~~l~s~  336 (424)
                          ...|...+.+++|+|+   +. +|++++.++.+.+|+... ...  +..+.+|...|++++|+|++.   .+|+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred             cccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCC-CceeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence                1257788999999997   55 799999999998887776 443  677888999999999999973   489999


Q ss_pred             ECCCeEEEeeCCCCCcccCCCCc--------------------------------CCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          337 CLGRRLMVWDLSRIDEEQTPEDA--------------------------------EDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       337 ~~dg~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      +.||.|++||++...........                                ......++..+.+|...|++++|+|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            99999999999875322111000                                0011256778889999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCcc
Q 014433          385 CEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +++ +|++++.||.|+||++..+.
T Consensus       317 ~~~-~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          317 TGT-ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SSC-CEEEEETTSCEEEEEECTTS
T ss_pred             CCC-EEEEecCCCcEEEEecCcCc
Confidence            999 69999999999999998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-34  Score=271.89  Aligned_cols=257  Identities=21%  Similarity=0.371  Sum_probs=215.4

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ++........|.+.|++++|+|++. +||+|+.||.|++||+..          ......+.+|...|.+++|++  . +
T Consensus       123 ~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~--~-~  188 (401)
T 4aez_A          123 GSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVES----------QTKLRTMAGHQARVGCLSWNR--H-V  188 (401)
T ss_dssp             CCEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------CCEEEEECCCSSCEEEEEEET--T-E
T ss_pred             CcEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcC----------CeEEEEecCCCCceEEEEECC--C-E
Confidence            3444455556899999999999886 899999999999999987          456778889999999999953  3 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      |++|+.||.|++||++...     .....+.+|...|.+++|+|++. +|++++.||.|++||++++.   ++..+..|.
T Consensus       189 l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~  259 (401)
T 4aez_A          189 LSSGSRSGAIHHHDVRIAN-----HQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSI---PKFTKTNHN  259 (401)
T ss_dssp             EEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSS---EEEEECCCS
T ss_pred             EEEEcCCCCEEEEecccCc-----ceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCC---ccEEecCCc
Confidence            9999999999999998543     24566778999999999999876 56799999999999999855   466777899


Q ss_pred             CCeeEEEecCCCCeEEEEEe--CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE--ECCCeEEEeeCCC
Q 014433          274 SEVNCLAFNPFNEWILATGS--TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC--CLGRRLMVWDLSR  349 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~--~~dg~i~iwd~~~  349 (424)
                      ..|.+++|+|++..++++|+  .|+.|++||+++ +.++..+. +...|.+++|+|++. +|+++  +.||.|++||+..
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEET
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCC
Confidence            99999999999888888876  799999999998 67777775 578899999999997 56664  3899999999976


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ...            .....+.+|...|.+++|+|+++ +|++++.||.|++|++.++..
T Consensus       337 ~~~------------~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          337 SGL------------TKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             TEE------------EEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC---
T ss_pred             ccc------------eeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcc
Confidence            421            34455678999999999999999 799999999999999988754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-35  Score=294.10  Aligned_cols=245  Identities=20%  Similarity=0.310  Sum_probs=207.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +.+.+.+++|+|+++ +||+++ ++.|+||++..          ......+.+|...|++++|+|++. +|++|+.||+|
T Consensus        17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~----------~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v   83 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGS----------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNV   83 (611)
T ss_dssp             CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTC----------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred             ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCC----------cccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCE
Confidence            467889999999987 788877 57999999976          455678899999999999999998 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +|||+.++..    .....+.+|.+.|.+++|+|++..++ +++.+    +.|++||...     ....+.+|...|+++
T Consensus        84 ~lWd~~~~~~----~~~~~~~~~~~~v~~v~fs~dg~~l~-~~~~~~~~~~~v~~wd~~~-----~~~~l~gh~~~v~~v  153 (611)
T 1nr0_A           84 RIWDTTQTTH----ILKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGT-----SNGNLTGQARAMNSV  153 (611)
T ss_dssp             EEEESSSTTC----CEEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCC-----BCBCCCCCSSCEEEE
T ss_pred             EEeECCCCcc----eeeEeecccCCceEEEEECCCCCEEE-EEECCCCceeEEEEeeCCC-----CcceecCCCCCceEE
Confidence            9999975432    12345678999999999999998654 55543    4788888533     245667899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|+|+++..|++|+.|++|++||.+. .+.+..+.+|...|.+++|+|++. +|++++.|++|++||+..+..       
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~-------  224 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTK-------  224 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-------
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcE-------
Confidence            99999887799999999999999887 677888999999999999999996 899999999999999987532       


Q ss_pred             CCCCCeeeEEEc-------CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          360 EDGPPELLFIHG-------GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       360 ~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                             +..+.       +|...|.+++|+|+++ +|++++.|++|++||+.++.
T Consensus       225 -------~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          225 -------TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             -------EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE
T ss_pred             -------eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCc
Confidence                   33332       7999999999999999 79999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=276.34  Aligned_cols=259  Identities=19%  Similarity=0.302  Sum_probs=213.1

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  198 (424)
                      ..+|.+.|++++|+|++. +||+|+.||.|+||++..        ........+.+|...|++++|+++  +. +|++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~   76 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEG--------ETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCS   76 (379)
T ss_dssp             EEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEE
T ss_pred             ecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCC--------CcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEec
Confidence            347999999999999886 899999999999999974        224556678899999999999876  55 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC--CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      .||.|++||+.++.    ......+..|...|.+++|+|+  +. +|++++.||.|++||++.... .....+..|...|
T Consensus        77 ~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v  150 (379)
T 3jrp_A           77 YDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGV  150 (379)
T ss_dssp             TTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCE
T ss_pred             cCCEEEEEEcCCCc----eeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCc-eeeEEecCCCCce
Confidence            99999999998752    1245666779999999999998  55 667999999999999998753 3345667899999


Q ss_pred             eEEEecC-------------CCCeEEEEEeCCCcEEEEECCCCCC---cceEecCCCCCEEEEEEcCCC--CcEEEEEEC
Q 014433          277 NCLAFNP-------------FNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKN--ETILASCCL  338 (424)
Q Consensus       277 ~~v~~~~-------------~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~--~~~l~s~~~  338 (424)
                      ++++|+|             ++. +|++|+.||.|++||++....   ++..+..|...|.+++|+|++  ..+|++++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             EEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             EEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence            9999999             465 799999999999999987432   456778899999999999993  358999999


Q ss_pred             CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ||.|+|||++......         ...+.....|...|++++|+|+++ +|++++.||.|++|++..
T Consensus       230 dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          230 DRTCIIWTQDNEQGPW---------KKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TSCEEEEEESSTTSCC---------EEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEE
T ss_pred             CCEEEEEeCCCCCccc---------eeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCC
Confidence            9999999998753210         011222234788899999999999 588889999999999973

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7e-35  Score=272.00  Aligned_cols=245  Identities=16%  Similarity=0.224  Sum_probs=195.8

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCceeEEEecCCCCceEEEEe
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .+|.+.|.+++|+|++..+|++|+.||.|++||+..           .....+..   |...|.+++|+|++. +|++|+
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  182 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-----------SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGD  182 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-----------CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-----------CceEEEeccCCCCCCeEEEEECCCCC-EEEEEC
Confidence            479999999999995556899999999999999985           22334443   448899999999887 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .||.|++||++.       ..+..+..|...|.+++|+|+++.++++++.|+.|++||+++............|...|++
T Consensus       183 ~d~~i~i~d~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  255 (383)
T 3ei3_B          183 STGRLLLLGLDG-------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA  255 (383)
T ss_dssp             TTSEEEEEETTS-------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEE
T ss_pred             CCCCEEEEECCC-------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEE
Confidence            999999999942       2456678899999999999999878889999999999999985533334344479999999


Q ss_pred             EEecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-----------------CCEEEEEEcCCCCcEEEEEECCC
Q 014433          279 LAFNP-FNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-----------------EEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       279 v~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-----------------~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      ++|+| ++. +|++++.|+.|++||+++ ...+..+..|.                 ..+..++|+|++..   +++.|+
T Consensus       256 ~~~s~~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~  330 (383)
T 3ei3_B          256 AYFNPTDST-KLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKR  330 (383)
T ss_dssp             EEECTTTSC-EEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCC
T ss_pred             EEEcCCCCC-EEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCC
Confidence            99999 887 699999999999999998 45555555432                 33444666666642   667899


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC--CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .|+|||+.++              .++..+.+  |...+..++|+|+++ +|++++ |+.|+||++++
T Consensus       331 ~i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          331 TIDIYDANSG--------------GLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEEETTTC--------------CEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             eEEEEecCCC--------------ceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            9999999875              44566665  456677789999999 688887 99999999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=290.65  Aligned_cols=262  Identities=14%  Similarity=0.129  Sum_probs=204.4

Q ss_pred             EeccCCceeEEEecCCC-C-------cEEEE-------------------EeCCCeEEEEeCCCCCCCCCCCCCCCC--c
Q 014433          121 QINHDGEVNRARYMPQN-P-------FLIAT-------------------KTVSAEVYVFDYSKHPSKPPLDGACSP--D  171 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~-~-------~~lat-------------------g~~dg~v~iw~~~~~~~~~~~~~~~~~--~  171 (424)
                      .+.+.+.|.+++|+|++ .       .+||+                   ++.|++|+||++...        ....  .
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~--------~~~~~~~  200 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS--------TLHCVKV  200 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETT--------TCCEEEE
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC--------CCCceEE
Confidence            34578999999999975 1       36666                   457789999998761        1111  2


Q ss_pred             EEEecCCCceeEEEecCCC-----CceEEEEeCCCcEEEEeCCCCCCCC-----cccceeeeecCCccEeeEEEecCCCc
Q 014433          172 LRLRGHSTEGYGLSWSKFK-----EGHLLSGSDDAQICLWDINAAPKNK-----SLEAMQIFKVHEGVVEDVAWHLRHEY  241 (424)
Q Consensus       172 ~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~  241 (424)
                      ..+.+|.+.|.+++|+|++     ..+||+|+.||+|++||+..+....     ...+...+.+|...|++++|++.+  
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--  278 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--  278 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--
Confidence            3466788999999999962     2489999999999999998664321     112334577899999999999864  


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE--EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC-
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL--AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-  318 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v--~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~-  318 (424)
                      .|++|+.||+|++||++++..  +...+..|...|++|  +|+|++..+||+|+.|++|+|||+++ .+++..+.+|.. 
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~~~~~~~  355 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTTVSRFRG  355 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEEEEECSC
T ss_pred             eEEEEeCCCEEEEEECCCCCC--ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCccccccccccc
Confidence            678999999999999997643  455678899999999  57887634899999999999999997 566666666653 


Q ss_pred             -CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014433          319 -EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN  397 (424)
Q Consensus       319 -~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  397 (424)
                       .|.+++|+|++. .|++++.|++|++||++..              .++..+.+|...|++++|+|+++ +|++|+.||
T Consensus       356 ~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~--------------~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dg  419 (524)
T 2j04_B          356 SNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA--------------FAVHPLVSRETTITAIGVSRLHP-MVLAGSADG  419 (524)
T ss_dssp             CSCCCEEEETTTT-EEEEECSSSEEEEEETTCT--------------TCCEEEEECSSCEEEEECCSSCC-BCEEEETTT
T ss_pred             CcccceEeCCCcC-eEEEeCCCCcEEEEECccc--------------ccceeeecCCCceEEEEeCCCCC-eEEEEECCC
Confidence             588999999986 6889999999999999874              33456678999999999999999 689999999


Q ss_pred             cEEEEecCCccCCC
Q 014433          398 ILQIWQMAENIYHD  411 (424)
Q Consensus       398 ~i~vw~~~~~~~~~  411 (424)
                      +|++|++..+.+..
T Consensus       420 tv~lwd~~~~~~~~  433 (524)
T 2j04_B          420 SLIITNAARRLLHG  433 (524)
T ss_dssp             EEECCBSCSSTTTC
T ss_pred             EEEEEechHhhccc
Confidence            99999998775543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=267.76  Aligned_cols=274  Identities=15%  Similarity=0.282  Sum_probs=225.3

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ..++.....+|.+.|++++|+|++. +||+|+.||.|+|||+..          ......+.+|...|.+++|+|++. +
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~   88 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLN----------GERLGTLDGHTGTIWSIDVDCFTK-Y   88 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTT----------CCEEEEECCCSSCEEEEEECTTSS-E
T ss_pred             cccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCC----------chhhhhhhhcCCcEEEEEEcCCCC-E
Confidence            3466677778999999999999886 899999999999999987          466778889999999999999887 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-----CeEEEEEcCCCCCCC----
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----QYLLIWDLRTPSVSK----  264 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~i~d~~~~~~~~----  264 (424)
                      |++++.||.|++||+.++.      .+..+. +...|.+++|+|++.. +++++.+     |.|++||++......    
T Consensus        89 l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           89 CVTGSADYSIKLWDVSNGQ------CVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             EEEEETTTEEEEEETTTCC------EEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             EEEEeCCCeEEEEECCCCc------EEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecc
Confidence            9999999999999998763      334444 7889999999999875 5578888     999999998765322    


Q ss_pred             ----CeeeeeccCC--CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          265 ----PVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       265 ----~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                          ++..+..|..  .+.+++|+|++. +|++|+.||.|++||+++...++..+..|...|.+++|+|++. +|++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  238 (369)
T 3zwl_B          161 VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSR  238 (369)
T ss_dssp             ECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred             cccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecC
Confidence                3344455655  899999999988 6899999999999999986678888999999999999999985 7999999


Q ss_pred             CCeEEEeeCCCCCcccCCCCcC-----------------------------------------CCCCeeeEEEcCCCCCc
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAE-----------------------------------------DGPPELLFIHGGHTSKI  377 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~h~~~v  377 (424)
                      |+.|++||++............                                         ......+..+.+|...|
T Consensus       239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  318 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL  318 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE
Confidence            9999999998765432111000                                         00123445667899999


Q ss_pred             ceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          378 SDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ++++|+|+++ +|++++.||.|++|++..+.+.
T Consensus       319 ~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          319 NTVAISPQGT-SYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             EEEEECTTSS-EEEEEETTSEEEEEEECHHHHT
T ss_pred             EEEEECCCCC-EEEEEcCCCeEEEEECccccch
Confidence            9999999999 7999999999999999987543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.3e-35  Score=272.24  Aligned_cols=257  Identities=14%  Similarity=0.239  Sum_probs=210.3

Q ss_pred             EEeccCCceeEEEecCC----C---CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-----CCceeEEEec
Q 014433          120 QQINHDGEVNRARYMPQ----N---PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-----STEGYGLSWS  187 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~----~---~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~  187 (424)
                      ....|...|++++|+|+    +   . +|++++.||.|++|++.......     ......+..|     ...|.+++|+
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEE
T ss_pred             EEecCCCcEEEEEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEe
Confidence            34489999999999998    5   5 89999999999999998721100     0115677788     5899999999


Q ss_pred             ----CCCCce-EEEEeCCCcEEEEeCCC------CCCCCcccceeee-------ecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          188 ----KFKEGH-LLSGSDDAQICLWDINA------APKNKSLEAMQIF-------KVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       188 ----~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                          |++. + |++++.||.|++||+..      ..... +.+...+       ..|...|.+++|+|++  ++++++.|
T Consensus       131 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d  206 (397)
T 1sq9_A          131 ASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNN  206 (397)
T ss_dssp             CCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTT
T ss_pred             eccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCC
Confidence                8887 7 99999999999999987      43322 1111234       3488899999999998  67799999


Q ss_pred             CeEEEEEcCCCCCCCCeeeeec---c---CCCeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCCcceEecC-----
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVA---H---QSEVNCLAFNPFNEWILATGSTD---KTVKLFDLRKISTALHTFDS-----  315 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~---~---~~~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~-----  315 (424)
                      |.|++||++++.   .+..+..   |   ...|.+++|+|++. +|++++.|   |.|++||+++ .+++..+..     
T Consensus       207 g~i~i~d~~~~~---~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~  281 (397)
T 1sq9_A          207 GTVQISELSTLR---PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSS  281 (397)
T ss_dssp             SEEEEEETTTTE---EEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC----
T ss_pred             CcEEEEECCCCc---eeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCC-CcccceeccCcccc
Confidence            999999999865   3667777   8   99999999999988 68899999   9999999998 678888888     


Q ss_pred             --------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc------CC--------
Q 014433          316 --------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG------GH--------  373 (424)
Q Consensus       316 --------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~h--------  373 (424)
                              |...|.+++|+|++. +|++++.||.|+|||++..              ..+..+.      +|        
T Consensus       282 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~g~  346 (397)
T 1sq9_A          282 QASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK--------------ERITTLNMHCDDIEIEEDILAVD  346 (397)
T ss_dssp             ----CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT--------------EEEEEEECCGGGCSSGGGCCCBC
T ss_pred             cccccccccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC--------------ceeEEEecccCcccchhhhhccc
Confidence                    999999999999996 7999999999999999875              4555666      66        


Q ss_pred             -------CCCcceEEeCCCC----------CcEEEEEeCCCcEEEEecCCc
Q 014433          374 -------TSKISDFSWNPCE----------DWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       374 -------~~~v~~~~~~~~~----------~~~l~s~~~dg~i~vw~~~~~  407 (424)
                             ...|++++|+|++          + +|++++.||.|++|++.++
T Consensus       347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNE-SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TTSCBCSSCCEEEEEEECTTTSBSTTCTTSC-EEEEEETTTEEEEEEEEC-
T ss_pred             cccccccCCceeEEEeccccccccccccccc-eEEEecCCCcEEEEEcCCC
Confidence                   8999999999998          5 7999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-33  Score=257.53  Aligned_cols=247  Identities=16%  Similarity=0.241  Sum_probs=208.2

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      .......|...|.+++|+|++. +|++++.||.|++|++..        ........+..|...|.+++|+|++. +|++
T Consensus        89 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  158 (337)
T 1gxr_A           89 SQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAA--------PTPRIKAELTSSAPACYALAISPDSK-VCFS  158 (337)
T ss_dssp             EEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCC--------C--EEEEEEECSSSCEEEEEECTTSS-EEEE
T ss_pred             ecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCC--------CCcceeeecccCCCceEEEEECCCCC-EEEE
Confidence            3334447999999999999886 899999999999999987        22234567788999999999999887 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      ++.||.|++||++++      .....+..|...|.+++|+|++. .+++++.||.|++||+++++.   +.. ..+...+
T Consensus       159 ~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~---~~~-~~~~~~v  227 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ---LQQ-HDFTSQI  227 (337)
T ss_dssp             EETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE---EEE-EECSSCE
T ss_pred             EeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCce---Eee-ecCCCce
Confidence            999999999999865      34566778999999999999986 566999999999999998653   333 3478899


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      .+++|+|++. +|++++.++.|++||++..  ....+..|...|.+++|+|+++ +|++++.||.|++||+....     
T Consensus       228 ~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~-----  298 (337)
T 1gxr_A          228 FSLGYCPTGE-WLAVGMESSNVEVLHVNKP--DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA-----  298 (337)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTSS--CEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC-----
T ss_pred             EEEEECCCCC-EEEEEcCCCcEEEEECCCC--CeEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCe-----
Confidence            9999999998 6899999999999999973  3457788999999999999996 79999999999999998753     


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                               .+. ...|...|.+++|+|+++ +|++++.||.|++|++
T Consensus       299 ---------~~~-~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          299 ---------SIF-QSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---------EEE-EEECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred             ---------EEE-EecCCCcEEEEEECCCCC-EEEEecCCCeEEEEEE
Confidence                     222 235778899999999999 6899999999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-36  Score=281.34  Aligned_cols=256  Identities=13%  Similarity=0.169  Sum_probs=200.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +||+|+.||.|+||++..        ........+.+|...|.+++|+|++. +|++++.||.
T Consensus         9 ~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~   78 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDG--------NGWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRN   78 (377)
T ss_dssp             ECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEET--------TEEEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSS
T ss_pred             cCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccC--------CceEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCe
Confidence            3678999999999886 899999999999999986        11144556788999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~  281 (424)
                      |++||+.++.   .......+..|...|.+++|+|++. +|++++.|+.|++||++.+........+.. |...|++++|
T Consensus        79 v~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           79 AYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             EEEC---------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             EEEEEcCCCC---ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence            9999998764   1234555677999999999999887 456999999999999998764334566666 9999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCC-----------------CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKI-----------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~-----------------~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      +|++. +|++|+.|+.|++||++..                 +.++..+ .|...|.+++|+|++. +|++++.||.|++
T Consensus       155 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~i  231 (377)
T 3dwl_C          155 HPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTI  231 (377)
T ss_dssp             CTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-
T ss_pred             cCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEE
Confidence            99887 6999999999999998631                 2345556 8999999999999996 7999999999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ||++....          ++.++..+.+|...|.+++|+|+++ +|++++.++. .+|+...+
T Consensus       232 wd~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~-~~~~~~~~  282 (377)
T 3dwl_C          232 AYPSAPEQ----------PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSP-ILLQGNES  282 (377)
T ss_dssp             CEECSTTS----------CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSE-EEECCCC-
T ss_pred             EECCCCCC----------cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcE-EEEEeCCC
Confidence            99987542          1123566778999999999999998 6888776664 57777644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=270.40  Aligned_cols=243  Identities=17%  Similarity=0.296  Sum_probs=209.5

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +||+|+.||.|++|+..           ......+.+|...|.+++|+|++. +|++++.||.
T Consensus       106 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~  172 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGN-SIVTGVENGELRLWNKT-----------GALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENV  172 (425)
T ss_dssp             --CBCEEEEEECTTSS-EEEEEETTSCEEEEETT-----------SCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCC
T ss_pred             CCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeCC-----------CCeeeeccCCCccEEEEEECCCCC-EEEEEecCCe
Confidence            3678999999999886 89999999999999943           355677889999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCcc---------------EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGV---------------VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      |++||+.++.      .+..+..+...               +.+++|++++  .+++++.+|.|++||++++.   .+.
T Consensus       173 i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~---~~~  241 (425)
T 1r5m_A          173 TILWNVISGT------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT---PTG  241 (425)
T ss_dssp             EEEEETTTTE------EEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS---CSE
T ss_pred             EEEEECCCCc------EEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc---eee
Confidence            9999997663      34444445555               9999999975  46689999999999999865   366


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      .+..|...|.+++|+|++. +|++++.||.|++||+++ ..++..+..|...|.+++|+|++  ++++++.|+.|++||+
T Consensus       242 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEET
T ss_pred             eeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEEC
Confidence            7778999999999999988 699999999999999998 67888899999999999999988  7999999999999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +..              ..+..+..|...|.+++|+|+++ +|++++.||.|++|++.++.
T Consensus       318 ~~~--------------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          318 KQN--------------TLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTT--------------EEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred             CCC--------------cEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence            874              56777788999999999999999 78999999999999998764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.2e-34  Score=279.95  Aligned_cols=242  Identities=26%  Similarity=0.454  Sum_probs=212.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|.+++|+|++. +|++++.||.|++|+...           .....+.+|...+.+++|+|++. +|++|+.|
T Consensus       299 ~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~d  365 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSPDGQ-TIASASDD  365 (577)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECCCCC-EEEEEeCC
Confidence            457999999999999886 899999999999999865           34567889999999999999988 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |.|++||...       ..+..+.+|...|.+++|+|++.. |++++.|+.|++||...    +.+..+..|...|++++
T Consensus       366 g~v~~~~~~~-------~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~  433 (577)
T 2ymu_A          366 KTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVA  433 (577)
T ss_dssp             SEEEEEETTC-------CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTC----CEEEEEECCSSCEEEEE
T ss_pred             CEEEEEcCCC-------CEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCC----CEEEEecCCCCCeEEEE
Confidence            9999999643       245667889999999999999875 56999999999999643    24677889999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+|++. +|++++.|+.|++||+.  ++.+..+.+|...|++++|+|++. +|++++.|+.|+|||...           
T Consensus       434 ~s~d~~-~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~~-----------  498 (577)
T 2ymu_A          434 FSPDDQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG-----------  498 (577)
T ss_dssp             ECTTSS-EEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS-----------
T ss_pred             ECCCCC-EEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCCC-----------
Confidence            999998 69999999999999975  577888999999999999999996 799999999999999643           


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                          +++..+.+|...|++++|+|+++ +|++++.||.|+|||....
T Consensus       499 ----~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~~~  540 (577)
T 2ymu_A          499 ----QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ  540 (577)
T ss_dssp             ----CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTSC
T ss_pred             ----CEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCCCC
Confidence                56778889999999999999999 5899999999999997544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-33  Score=258.42  Aligned_cols=257  Identities=21%  Similarity=0.293  Sum_probs=215.5

Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCceeEEEecCCCCc
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~  192 (424)
                      .......+.|.+.|++++|+|++. +|++++ ||.|++|++....       .......+.  +|...|.+++|+|++. 
T Consensus        41 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~-  110 (337)
T 1gxr_A           41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPG-------NKSPVSQLDCLNRDNYIRSCKLLPDGC-  110 (337)
T ss_dssp             EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTT-------CCSCSEEEECSCTTSBEEEEEECTTSS-
T ss_pred             ccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCC-------ceeeeecccccCCCCcEEEEEEcCCCC-
Confidence            455566779999999999999886 788888 9999999998621       122334444  7999999999999887 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      +|++++.||.|++||+.....    .....+..|...|.+++|+|++. ++++++.||.|++||+++++   .+..+..|
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~---~~~~~~~~  182 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT---LVRQFQGH  182 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE---EEEEECCC
T ss_pred             EEEEEcCCCcEEEEECCCCCc----ceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCc---eeeeeecc
Confidence            799999999999999987632    23455677899999999999886 55699999999999999865   36777789


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ...+.+++|+|++. +|++++.||.|++||+++ .+.+..+. +...+.+++|+|++. +|++++.|+.|++||++... 
T Consensus       183 ~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~-  257 (337)
T 1gxr_A          183 TDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD-  257 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC-
T ss_pred             cCceEEEEECCCCC-EEEEEecCCcEEEEECCC-CceEeeec-CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCC-
Confidence            99999999999987 689999999999999998 56665554 688999999999996 78999999999999998742 


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                    ......|...|.+++|+|+++ +|++++.||.|++|++.++..
T Consensus       258 --------------~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          258 --------------KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             --------------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred             --------------eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeE
Confidence                          345678999999999999999 689999999999999987643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-34  Score=267.21  Aligned_cols=307  Identities=16%  Similarity=0.172  Sum_probs=230.6

Q ss_pred             CCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE
Q 014433           42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ  121 (424)
Q Consensus        42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (424)
                      -|..++.|.|+.          ..++.|+     .++.++++.+.-                          ++++....
T Consensus         9 ~~i~~~~~s~~~----------~~l~~~~-----~d~~v~i~~~~~--------------------------~~~~~~~~   47 (372)
T 1k8k_C            9 EPISCHAWNKDR----------TQIAICP-----NNHEVHIYEKSG--------------------------NKWVQVHE   47 (372)
T ss_dssp             SCCCEEEECTTS----------SEEEEEC-----SSSEEEEEEEET--------------------------TEEEEEEE
T ss_pred             CCeEEEEECCCC----------CEEEEEe-----CCCEEEEEeCCC--------------------------CcEEeeee
Confidence            457789999875          4565554     356788887731                          12223333


Q ss_pred             -eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          122 -INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       122 -~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                       ..|.+.|++++|+|++. +|++|+.||.|++||+..        ........+..|...|.+++|+|++. +|++++.|
T Consensus        48 ~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  117 (372)
T 1k8k_C           48 LKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKG--------RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGS  117 (372)
T ss_dssp             EECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEET--------TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             ecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCC--------CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCC
Confidence             36999999999999886 899999999999999976        22223344567999999999999887 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC---------------CCCC
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---------------VSKP  265 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~---------------~~~~  265 (424)
                      |.|++||++.......  .......|...|.+++|+|++. +|++++.||.|++||++...               ....
T Consensus       118 ~~v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          118 RVISICYFEQENDWWV--CKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             SSEEEEEEETTTTEEE--EEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             CEEEEEEecCCCccee--eeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence            9999999987632111  1222356889999999999886 56799999999999975321               1234


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      +..+..|...|++++|+|++. +|++++.||.|++||+++ ++++..+..|...|.+++|+|++. +|+++ .|+.|++|
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLF  270 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEE
T ss_pred             eEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCC-CceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEE
Confidence            666678999999999999987 699999999999999998 678899999999999999999985 66666 99999999


Q ss_pred             eCCC--CC--cccCCCCcC----------------CCCCee-------eEEEcCCCCCcceEEeC-CCC---CcEEEEEe
Q 014433          346 DLSR--ID--EEQTPEDAE----------------DGPPEL-------LFIHGGHTSKISDFSWN-PCE---DWVISSVA  394 (424)
Q Consensus       346 d~~~--~~--~~~~~~~~~----------------~~~~~~-------~~~~~~h~~~v~~~~~~-~~~---~~~l~s~~  394 (424)
                      +++.  +.  .........                +.....       .....+|...|++++|+ +++   . +|+|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~  349 (372)
T 1k8k_C          271 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTG  349 (372)
T ss_dssp             EEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEE
T ss_pred             EccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEec
Confidence            9987  31  000000000                000011       11225899999999977 555   6 799999


Q ss_pred             CCCcEEEEecCCc
Q 014433          395 EDNILQIWQMAEN  407 (424)
Q Consensus       395 ~dg~i~vw~~~~~  407 (424)
                      .||.|++|++.++
T Consensus       350 ~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          350 MDGGMSIWDVRSL  362 (372)
T ss_dssp             TTSEEEEEEHHHH
T ss_pred             CCCceEEEEecCh
Confidence            9999999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.1e-35  Score=271.48  Aligned_cols=309  Identities=13%  Similarity=0.123  Sum_probs=219.0

Q ss_pred             hcCCCCCccEEEEccCCCCCCCCCCceEEEEEeec--CCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 014433           37 THALEWPSLTVEWLPDREEPPGKDYSVQKMILGTH--TSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG  114 (424)
Q Consensus        37 ~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~--~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (424)
                      .+.+.+|.++++|.|+.          +.++.|..  +..+.+|.|.++.+.........                 ...
T Consensus        10 ~~~~g~PV~sv~fs~dg----------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----------------~~~   62 (365)
T 4h5i_A           10 SYNVGYPAYGAKFLNND----------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----------------QFH   62 (365)
T ss_dssp             EEECSSCEEEEEEEETT----------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----------------HEE
T ss_pred             ecCCCCCEEEEEEeCCC----------cEEEEECCCccccCCCCEEEEEEEcCCCcceee-----------------eee
Confidence            45678999999999986          56666653  22345788999988533110000                 000


Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEE-----------eCCCeEEEEeCCCCCCCCCCCCCCCCcEE-----EecCC
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATK-----------TVSAEVYVFDYSKHPSKPPLDGACSPDLR-----LRGHS  178 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg-----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----~~~h~  178 (424)
                      .......-.|...|.++++.+  . ++++|           +.|+.+++|++......      ......     ...+.
T Consensus        63 ~~~~~~l~~~~~~v~s~~~~~--~-~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~  133 (365)
T 4h5i_A           63 ILSEFALEDNDDSPTAIDASK--G-IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ------LEFLTSVDFDASTNAD  133 (365)
T ss_dssp             EEEEEECCTTSCCCCEEEEET--T-EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE------EEEEEEECSSCCCCTT
T ss_pred             eeeEEEccCCCCceEEEEeCC--C-EEEEEECCCccEEEEecCCCcEEEEEecCCCce------EEEeeeeceeecCCcc
Confidence            111122335778888888764  2 45544           45788999998762111      111111     12234


Q ss_pred             CceeEEEecCCCCceEE--EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEE
Q 014433          179 TEGYGLSWSKFKEGHLL--SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d  256 (424)
                      ..+.+++|+|+|. +++  +++.|++|+|||+.+..      .+..+. |...|.+++|+|++. ++++++. +.+++|+
T Consensus       134 ~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~------~~~~~~-~~~~V~~v~fspdg~-~l~s~s~-~~~~~~~  203 (365)
T 4h5i_A          134 DYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLT------EKFEIE-TRGEVKDLHFSTDGK-VVAYITG-SSLEVIS  203 (365)
T ss_dssp             CCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTE------EEEEEE-CSSCCCEEEECTTSS-EEEEECS-SCEEEEE
T ss_pred             cCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCc------EEEEeC-CCCceEEEEEccCCc-eEEeccc-eeEEEEE
Confidence            5588999999998 555  45579999999998763      334443 778899999999997 5567764 5567777


Q ss_pred             cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC----cEEEEECCCCCC---cceEecCCCCCEEEEEEcCCC
Q 014433          257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK----TVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg----~i~iwd~~~~~~---~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      ..++.. ........|...|.+++|+|++. ++++++.|+    .+++||+.....   ....+..|...|++++|+|++
T Consensus       204 ~~~~~~-~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          204 TVTGSC-IARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             TTTCCE-EEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             eccCcc-eeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            766553 11123356788899999999998 577887776    688899876322   234567899999999999999


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      + +||+|+.|++|+|||++++              +++.. +.+|...|++++|+|+++ +|+|++.|++|+||++..+.
T Consensus       282 ~-~lasgs~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          282 E-LAVLASNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             C-EEEEEETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTTT
T ss_pred             C-ceEEEcCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCC
Confidence            6 8999999999999999875              45555 479999999999999999 79999999999999997654


Q ss_pred             C
Q 014433          409 Y  409 (424)
Q Consensus       409 ~  409 (424)
                      .
T Consensus       346 ~  346 (365)
T 4h5i_A          346 A  346 (365)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-33  Score=251.55  Aligned_cols=253  Identities=19%  Similarity=0.263  Sum_probs=209.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .....|.+.|.+++|+|++. +|++|+.||.|++|++...       ........+.+|...|.+++|.  +. +|++++
T Consensus        53 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~  121 (313)
T 3odt_A           53 TVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFAT-------SGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGS  121 (313)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSCEEEEETTCC-------TTSCC-CEECCCSSCEEEEEEE--TT-EEEEEE
T ss_pred             EEeecCCccEEEEEECCCCC-EEEEecCCCeEEEEEeeec-------CCCCcccchhhcccCEEEEEec--CC-EEEEEe
Confidence            33457899999999999886 8999999999999999762       1234566788999999999994  44 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCee
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVN  277 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~  277 (424)
                      .||.|++||..        .....+..|...+.+++|+|.....+++++.||.|++||...     ....+.. |...+.
T Consensus       122 ~d~~i~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~  188 (313)
T 3odt_A          122 WDKTAKVWKEG--------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-----VIKTFSGIHNDVVR  188 (313)
T ss_dssp             TTSEEEEEETT--------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----EEEEECSSCSSCEE
T ss_pred             CCCCEEEEcCC--------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----eEEEEeccCcccEE
Confidence            99999999921        345667789999999999994445778999999999999432     3455555 889999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      +++|+|++.  +++++.||.|++||+++ ++++..+..|...|++++|+|++ . |++++.||.|++||++..       
T Consensus       189 ~~~~~~~~~--~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~-------  256 (313)
T 3odt_A          189 HLAVVDDGH--FISCSNDGLIKLVDMHT-GDVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG-------  256 (313)
T ss_dssp             EEEEEETTE--EEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC-------
T ss_pred             EEEEcCCCe--EEEccCCCeEEEEECCc-hhhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC-------
Confidence            999999875  88999999999999998 68889999999999999999998 3 889999999999999875       


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCCCCCCC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP  416 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  416 (424)
                             .++..+..|...|.+++|+|+++  +++++.||.|++|++.++.+..+...+
T Consensus       257 -------~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~~~~~~~~~~~  306 (313)
T 3odt_A          257 -------SLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEKSRWASEDEIK  306 (313)
T ss_dssp             -------CEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEEESCGGGCCC-----
T ss_pred             -------ceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence                   55677788998999999999998  456889999999999998776655543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-33  Score=266.10  Aligned_cols=258  Identities=22%  Similarity=0.424  Sum_probs=215.4

Q ss_pred             CCcEE-EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433          113 NGKVQ-IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       113 ~~~~~-~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      .+++. ++..-.|...|++|+|+|++. +||+|+.||.|+|||+.+          ......+.+|...+.+++|++  .
T Consensus       134 tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~----------~~~~~~~~~h~~~v~~~s~~~--~  200 (420)
T 4gga_A          134 SGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQ----------QKRLRNMTSHSARVGSLSWNS--Y  200 (420)
T ss_dssp             TCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEET--T
T ss_pred             CCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCC----------CcEEEEEeCCCCceEEEeeCC--C
Confidence            44443 333346888999999999986 899999999999999987          466778899999999999864  3


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-CCeeeee
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVV  270 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-~~~~~~~  270 (424)
                       +|++|+.|+.+++||.....     ..+..+.+|...+..+.|+|++. .+++++.|+.+++||...+... ..+....
T Consensus       201 -~l~sgs~d~~i~~~d~~~~~-----~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~  273 (420)
T 4gga_A          201 -ILSSGSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFT  273 (420)
T ss_dssp             -EEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEEC
T ss_pred             -EEEEEeCCCceeEeeecccc-----eeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeec
Confidence             79999999999999987643     24566788999999999999987 5679999999999999876532 3456667


Q ss_pred             ccCCCeeEEEecCCCCeEEEEE--eCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-CCCeEEEeeC
Q 014433          271 AHQSEVNCLAFNPFNEWILATG--STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLMVWDL  347 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-~dg~i~iwd~  347 (424)
                      .|...|.+++|+|.+..+++++  +.|++|++||+++ +.++..+.. ...+.++.|+|++..++++++ .|+.|+|||+
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~  351 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKY  351 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT-TEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc-cccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence            8999999999999988888775  4799999999998 677777765 467999999999975444333 6899999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .++              .++..+.+|...|++++|+|+++ +|+||+.|++|+|||+.+.
T Consensus       352 ~~~--------------~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          352 PTM--------------AKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             TTC--------------CEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred             CCC--------------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence            875              56788899999999999999999 6999999999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-35  Score=272.92  Aligned_cols=264  Identities=14%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +||+|+.||.|+|||+....       ...+...+.+|...|.+++|+|++. +|++|+.|+.
T Consensus        53 ~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~  123 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDG-------TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARV  123 (377)
T ss_dssp             CCSSCEEEEEECTTTC-CEEEEETTSSEEEC-------------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSC
T ss_pred             cCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCC-------ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCe
Confidence            6899999999999886 89999999999999998721       1345667788999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC---------------CCCe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV---------------SKPV  266 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~---------------~~~~  266 (424)
                      |++||++....   ......+.. |...|.+++|+|++. +|++++.||.|++||++....               ...+
T Consensus       124 i~iwd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  199 (377)
T 3dwl_C          124 ISVCYFEQEND---WWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC  199 (377)
T ss_dssp             EEECCC--------CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred             EEEEEECCccc---ceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence            99999987642   122445556 999999999999886 667999999999999964321               1123


Q ss_pred             eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc----ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA----LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       267 ~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      ..+ .|...|++++|+|++. +|++|+.||.|++||+++ ...    +..+..|...|.+++|+|++. +|++++.++.+
T Consensus       200 ~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~  275 (377)
T 3dwl_C          200 AEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI  275 (377)
T ss_dssp             ECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE
T ss_pred             hcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE
Confidence            333 7899999999999998 699999999999999998 444    778889999999999999985 78888766655


Q ss_pred             EEeeCCCCCccc--CCCCcCCCCC-----------------------eeeE-------------EEcCCCCCcceEEeCC
Q 014433          343 MVWDLSRIDEEQ--TPEDAEDGPP-----------------------ELLF-------------IHGGHTSKISDFSWNP  384 (424)
Q Consensus       343 ~iwd~~~~~~~~--~~~~~~~~~~-----------------------~~~~-------------~~~~h~~~v~~~~~~~  384 (424)
                       +|+........  ..........                       ....             ....|...|+++++.+
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~  354 (377)
T 3dwl_C          276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA  354 (377)
T ss_dssp             -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred             -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence             77665322110  0000000000                       0000             1124899999999876


Q ss_pred             CCCc---EEEEEeCCCcEEEEec
Q 014433          385 CEDW---VISSVAEDNILQIWQM  404 (424)
Q Consensus       385 ~~~~---~l~s~~~dg~i~vw~~  404 (424)
                      ....   .|+|+|.||.|+|||+
T Consensus       355 ~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          355 GTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCceEEEEeecCCCcEEEecC
Confidence            5543   5999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-34  Score=267.08  Aligned_cols=262  Identities=15%  Similarity=0.254  Sum_probs=210.4

Q ss_pred             eccCCceeEEEecCC---CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecCCCC--
Q 014433          122 INHDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFKE--  191 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~---~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~--  191 (424)
                      .+|.+.|++++|+|+   +..++++++.++.|+||++..          ......+..     |...|++++|+|++.  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   84 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS----------QGEIRLLQSYVDADADENFYTCAWTYDSNTS   84 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG----------GGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC----------CcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence            369999999999984   444566667778999999986          233333433     667899999999842  


Q ss_pred             -ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-
Q 014433          192 -GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-  269 (424)
Q Consensus       192 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-  269 (424)
                       .+|++|+.||.|++||+.++      ..+..+.+|...|.+++|+|.+..+|++++.||.|++||+++++.   +..+ 
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~  155 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITM------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL---VAIFG  155 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTC------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE---EEEEC
T ss_pred             CCEEEEecCCCEEEEEEchhc------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE---EEEec
Confidence             37999999999999999865      345667789999999999994445778999999999999998653   4554 


Q ss_pred             --eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe----------------------------cCCCCC
Q 014433          270 --VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF----------------------------DSHKEE  319 (424)
Q Consensus       270 --~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----------------------------~~h~~~  319 (424)
                        ..|...|.+++|+|++. +|++++.||.|++||+++ .+.+..+                            ..|...
T Consensus       156 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             STTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence              57999999999999888 699999999999999987 3333322                            338999


Q ss_pred             EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC--CCcEEEEEeCCC
Q 014433          320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC--EDWVISSVAEDN  397 (424)
Q Consensus       320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg  397 (424)
                      |.+++|+  + .+|++++.|+.|++||++..................+..+.+|...|+.++|+|+  ++ +|++++.||
T Consensus       234 v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg  309 (366)
T 3k26_A          234 VDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVG  309 (366)
T ss_dssp             CCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTS
T ss_pred             EEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCC
Confidence            9999999  4 3799999999999999987654332222223334667888899999999999999  88 799999999


Q ss_pred             cEEEEecCCcc
Q 014433          398 ILQIWQMAENI  408 (424)
Q Consensus       398 ~i~vw~~~~~~  408 (424)
                      .|++|++.++.
T Consensus       310 ~i~vwd~~~~~  320 (366)
T 3k26_A          310 KLYVWDLEVED  320 (366)
T ss_dssp             CEEEEECCSSS
T ss_pred             cEEEEECCCCC
Confidence            99999998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-34  Score=267.31  Aligned_cols=251  Identities=13%  Similarity=0.153  Sum_probs=211.1

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.++|++++|+|++. +||+|+.+|.|++|++..        ........+.+|...|.+++|+|++. +|++++.||.
T Consensus         6 ~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~   75 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSG--------NKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRN   75 (372)
T ss_dssp             SCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEET--------TEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSC
T ss_pred             ccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCC--------CcEEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCe
Confidence            3899999999999886 899999999999999987        22226678889999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~  281 (424)
                      |++||+.++..    .....+..|...|.+++|+|++. +|++++.||.|++||++..........+ ..|...|++++|
T Consensus        76 i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           76 AYVWTLKGRTW----KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             EEEEEEETTEE----EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             EEEEECCCCee----eeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            99999976521    22333456889999999999986 5679999999999999986531112222 567899999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCC-----------------CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRK-----------------ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~-----------------~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      +|++. +|++|+.||.|++||++.                 .+.++..+..|...|.+++|+|++. +|++++.||.|++
T Consensus       151 ~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i  228 (372)
T 1k8k_C          151 HPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCL  228 (372)
T ss_dssp             CTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEE
T ss_pred             cCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEE
Confidence            99887 699999999999999741                 2567788889999999999999995 7999999999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ||++..              ..+..+.+|...|.+++|+|++. +|+++ .|+.|++|++..
T Consensus       229 ~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          229 ADADKK--------------MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEGGGT--------------TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             EECCCC--------------ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence            999875              45677788999999999999998 67766 899999999988

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.5e-34  Score=268.29  Aligned_cols=258  Identities=13%  Similarity=0.159  Sum_probs=210.8

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC----C---CceEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----K---EGHLL  195 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~---~~~l~  195 (424)
                      +|.+.|++++|+|   .+||+|+.||.|+||++.......    .......+.+|...|.+++|+|+    +   . +|+
T Consensus        14 ~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~   85 (397)
T 1sq9_A           14 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVA   85 (397)
T ss_dssp             CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEE
T ss_pred             hhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc----CCCcceEEecCCCcEEEEEEecccccCCcccc-EEE
Confidence            6999999999998   489999999999999998721110    12356788899999999999998    6   6 799


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecC-----CccEeeEEEe----cCCCcEEEEEeCCCeEEEEEcCC------C
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVH-----EGVVEDVAWH----LRHEYLFGSVGDDQYLLIWDLRT------P  260 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~~~~s~~~dg~i~i~d~~~------~  260 (424)
                      +++.||.|++||+.+...... .....+..|     ...|.+++|+    |++..+|++++.||.|++||++.      .
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKK-VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCC-EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEcCCCCEEEEEccCCccccc-ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            999999999999987643111 114556667     5899999999    98875367999999999999998      5


Q ss_pred             CCCC--Ceeee-------eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---C---CCCEEEEEE
Q 014433          261 SVSK--PVQSV-------VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---H---KEEVFQVGW  325 (424)
Q Consensus       261 ~~~~--~~~~~-------~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h---~~~v~~~~~  325 (424)
                      ....  +...+       ..|...|++++|+|++  +|++|+.||.|++||+++ .+++..+..   |   ...|.+++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEE
Confidence            5322  11144       3488999999999988  699999999999999998 688888888   8   999999999


Q ss_pred             cCCCCcEEEEEECC---CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-------------CCCCcceEEeCCCCCcE
Q 014433          326 NPKNETILASCCLG---RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-------------HTSKISDFSWNPCEDWV  389 (424)
Q Consensus       326 sp~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~  389 (424)
                      +|++. +|++++.|   |.|++||++..              ..+..+.+             |...|.+++|+|+++ +
T Consensus       242 ~~~~~-~l~~~~~d~~~g~i~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  305 (397)
T 1sq9_A          242 SPQGS-LLAIAHDSNSFGCITLYETEFG--------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-T  305 (397)
T ss_dssp             CSSTT-EEEEEEEETTEEEEEEEETTTC--------------CEEEEECBC--------CCBSBSSCEEEEEECSSSS-E
T ss_pred             CCCCC-EEEEEecCCCCceEEEEECCCC--------------cccceeccCcccccccccccccCCcEEEEEECCCCC-E
Confidence            99985 78999999   99999999875              44566666             899999999999999 6


Q ss_pred             EEEEeCCCcEEEEecCCcc
Q 014433          390 ISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       390 l~s~~~dg~i~vw~~~~~~  408 (424)
                      |++++.||.|++|++.++.
T Consensus       306 l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          306 LCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEEETTSEEEEEETTTTE
T ss_pred             EEEEeCCCeEEEEEcCCCc
Confidence            8999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.7e-34  Score=261.16  Aligned_cols=266  Identities=15%  Similarity=0.222  Sum_probs=208.3

Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-  190 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-  190 (424)
                      .+......+|.+.|++++|+|++..++++|+.   ||.|+||++..        .... .....+|...|.+++|+|++ 
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~--------~~~~-~~~~~~~~~~v~~~~~~~~~~   78 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH--------GDLK-LLREIEKAKPIKCGTFGATSL   78 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS--------SSEE-EEEEEEESSCEEEEECTTCCT
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC--------Cccc-ceeeecccCcEEEEEEcCCCC
Confidence            34444445799999999999999878888887   99999999987        1111 12234799999999999984 


Q ss_pred             -CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEE------ecCCCcEEEEEeCCCeEEEEEcCCCCCC
Q 014433          191 -EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW------HLRHEYLFGSVGDDQYLLIWDLRTPSVS  263 (424)
Q Consensus       191 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~s~~~dg~i~i~d~~~~~~~  263 (424)
                       ..+|++|+.||.|++||+.+...     .+..+.+|...|.+++|      +|++. +|++++.||.|++||++++.. 
T Consensus        79 ~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~-  151 (357)
T 3i2n_A           79 QQRYLATGDFGGNLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD-  151 (357)
T ss_dssp             TTCCEEEEETTSCEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS-
T ss_pred             CCceEEEecCCCeEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC-
Confidence             34899999999999999987641     34567789999999965      56665 567999999999999998652 


Q ss_pred             CCeeeeeccCC----CeeEEE----ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC---CCCcE
Q 014433          264 KPVQSVVAHQS----EVNCLA----FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP---KNETI  332 (424)
Q Consensus       264 ~~~~~~~~~~~----~v~~v~----~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~~  332 (424)
                       ++..+..|..    .+.+++    |+|++. +|++|+.||.|++||+++ ... .....|...|.+++|+|   ++. +
T Consensus       152 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~~-~  226 (357)
T 3i2n_A          152 -PVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRN-MAL-RWETNIKNGVCSLEFDRKDISMN-K  226 (357)
T ss_dssp             -CSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTT-TEE-EEEEECSSCEEEEEESCSSSSCC-E
T ss_pred             -cceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECcc-Cce-eeecCCCCceEEEEcCCCCCCCC-E
Confidence             3555544444    889998    788887 699999999999999998 444 44466889999999999   775 7


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |++++.||.|++||++.......         .......+|...|++++|+|+++.+|++++.||.|++|++..+...
T Consensus       227 l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          227 LVATSLEGKFHVFDMRTQHPTKG---------FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEEEESTTEEEEEEEEEEETTTE---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             EEEECCCCeEEEEeCcCCCcccc---------eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            99999999999999987532111         1122455899999999999999867999999999999999876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=264.46  Aligned_cols=257  Identities=15%  Similarity=0.188  Sum_probs=210.8

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc---------------eeEEE
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE---------------GYGLS  185 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~  185 (424)
                      ...|...|.+++|+|++. +|++++.||.|++||+..          ......+..+...               +.+++
T Consensus       145 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (425)
T 1r5m_A          145 LNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVIS----------GTVMQHFELKETGGSSINAENHSGDGSLGVDVE  213 (425)
T ss_dssp             ECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTT----------TEEEEEECCC---------------CCCBSCCE
T ss_pred             ccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCC----------CcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence            346999999999999886 788999999999999976          3444555556555               99999


Q ss_pred             ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC
Q 014433          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (424)
Q Consensus       186 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~  265 (424)
                      |+|++  .+++++.+|.|++||+....      .+..+..|...|.+++|+|++. +|++++.||.|++||++++..   
T Consensus       214 ~~~~~--~~~~~~~~g~i~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~---  281 (425)
T 1r5m_A          214 WVDDD--KFVIPGPKGAIFVYQITEKT------PTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNS---  281 (425)
T ss_dssp             EEETT--EEEEECGGGCEEEEETTCSS------CSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSC---
T ss_pred             EcCCC--EEEEEcCCCeEEEEEcCCCc------eeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCcc---
Confidence            99864  59999999999999998763      3455667999999999999987 567999999999999998654   


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      +..+..|...|.+++|+|++  ++++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++.||.|++|
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVY  357 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEE
Confidence            66777899999999999988  689999999999999998 678888999999999999999995 79999999999999


Q ss_pred             eCCCCCcccCCCC-c-----CCCCCeeeEEEcCCCC--CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          346 DLSRIDEEQTPED-A-----EDGPPELLFIHGGHTS--KISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       346 d~~~~~~~~~~~~-~-----~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      |++.......... .     ...+..++..+.+|..  .|++++|+|+++ +|++++.||.|++|++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred             ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence            9987541110000 0     0011236788888976  999999999999 68899999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.1e-34  Score=265.63  Aligned_cols=259  Identities=17%  Similarity=0.258  Sum_probs=199.3

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE--ecCCCceeEEEecCCCCceEEEE
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL--RGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ...+|.+.|++++|+|++..+||+|+.||.|+|||+..          ......+  .+|...|.+++|+|++..+|+++
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV----------QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS----------TTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC----------cccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            34579999999999999856999999999999999986          2333334  36999999999999544489999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +.||.|++||++..    ..........|...|.+++|+|++. +|++++.||.|++||++.    .++..+..|...|.
T Consensus       138 ~~d~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          138 SIRGATTLRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG----HEIFKEKLHKAKVT  208 (383)
T ss_dssp             ETTTEEEEEETTSC----EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS----CEEEEEECSSSCEE
T ss_pred             eCCCEEEEEECCCC----ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC----CEEEEeccCCCcEE
Confidence            99999999999842    1222222334558899999999987 567999999999999942    24778889999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCC---CcceEecCCCCCEEEEEEcC-CCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNP-KNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp-~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      +++|+|+++++|++|+.|+.|++||+++..   .++..+ .|...|.+++|+| ++. +|++++.|+.|++||++.....
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSC
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccc
Confidence            999999998679999999999999998732   344444 6899999999999 885 7999999999999999886543


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCC----------CcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTS----------KISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ........       ....|..          .+..++|+|++++   +++.|+.|+|||+.++..
T Consensus       287 ~~~~~~~~-------~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          287 DQIIIHPH-------RQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             SEEEECCB-------CCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCE
T ss_pred             cccccccc-------cccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCce
Confidence            22110000       0011222          3344666666663   667899999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=275.69  Aligned_cols=266  Identities=17%  Similarity=0.280  Sum_probs=201.7

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCC-CCCCCCCCcEEEecCC------------CceeEEEecC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP-PLDGACSPDLRLRGHS------------TEGYGLSWSK  188 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~h~------------~~v~~l~~~~  188 (424)
                      +.|.+.|++++|+|++. +||+|+.||.|+||++....... ...........+.+|.            ..|.+++|+|
T Consensus        25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            45688999999999886 89999999999999998632110 0011122466788998            8899999999


Q ss_pred             CCC-ceEEEEeCCCcEEEEeCCCCCCC-------------------Ccc--------------cceee-eecCCccEeeE
Q 014433          189 FKE-GHLLSGSDDAQICLWDINAAPKN-------------------KSL--------------EAMQI-FKVHEGVVEDV  233 (424)
Q Consensus       189 ~~~-~~l~s~~~dg~i~iwd~~~~~~~-------------------~~~--------------~~~~~-~~~~~~~v~~~  233 (424)
                      ++. .+|++++.||.|++||+......                   ..+              .+... ..+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            873 37999999999999998753210                   000              00112 35799999999


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-------eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433          234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-------SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI  306 (424)
Q Consensus       234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  306 (424)
                      +|+|++. +|++| .|+.|++||++....  .+.       .+..|...|++++|+|++..+|++|+.||.|++||+++ 
T Consensus       184 ~~~~~~~-~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-  258 (447)
T 3dw8_B          184 SINSDYE-TYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-  258 (447)
T ss_dssp             EECTTSS-EEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-
T ss_pred             EEcCCCC-EEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-
Confidence            9999986 55677 799999999984321  122       34578999999999999844899999999999999998 


Q ss_pred             CCc----ceEecCCCC------------CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE
Q 014433          307 STA----LHTFDSHKE------------EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH  370 (424)
Q Consensus       307 ~~~----~~~~~~h~~------------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      ...    +..+..|..            .|.+++|+|++. +|++++. +.|+|||++...             .++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~-------------~~~~~~  323 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMEN-------------RPVETY  323 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCS-------------SCSCCE
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCc-------------ccccee
Confidence            444    678888876            999999999996 7888888 999999998622             233444


Q ss_pred             cCCCCC---------------cceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          371 GGHTSK---------------ISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       371 ~~h~~~---------------v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .+|...               +..++|+|+++ .|++++.||.|++||+.++..
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCE
T ss_pred             eccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcc
Confidence            555432               23499999999 689999999999999988753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=290.03  Aligned_cols=260  Identities=19%  Similarity=0.304  Sum_probs=214.1

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  198 (424)
                      ..+|.+.|++++|+|++. +|++|+.||.|+||++..        ........+.+|...|++++|+|+  +. +|++|+
T Consensus         5 l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~--------~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s   74 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEG--------ETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCS   74 (753)
T ss_dssp             ---CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEE
T ss_pred             cccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCC--------CCCccceeccCCcCceEEEEecCCCCCC-EEEEEe
Confidence            347999999999999987 799999999999999874        224556778899999999999987  55 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC--CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      .||.|++||+.++.    ......+..|...|.+++|+|+  +. ++++|+.||.|++||++.+.. .....+..|...|
T Consensus        75 ~Dg~I~vwd~~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v  148 (753)
T 3jro_A           75 YDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGV  148 (753)
T ss_dssp             TTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCE
T ss_pred             CCCeEEEEECCCCc----ccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCC-cceeEeecCCCce
Confidence            99999999998652    2245667789999999999998  65 677999999999999998753 2345667899999


Q ss_pred             eEEEecCC-------------CCeEEEEEeCCCcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCC--CcEEEEEEC
Q 014433          277 NCLAFNPF-------------NEWILATGSTDKTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKN--ETILASCCL  338 (424)
Q Consensus       277 ~~v~~~~~-------------~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~--~~~l~s~~~  338 (424)
                      .+++|+|.             +. +|++|+.||.|++||++...   .+...+.+|...|++++|+|++  ..+|++++.
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             EEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             EEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            99999994             55 69999999999999998743   4556788999999999999993  358999999


Q ss_pred             CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ||.|++||++.......         ..+....+|...|++++|+|+++ +|++++.||.|++|++..+
T Consensus       228 Dg~I~iwd~~~~~~~~~---------~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          228 DRTCIIWTQDNEQGPWK---------KTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSCEEEEEESSSSSCCB---------CCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSS
T ss_pred             CCEEEEecCCCCCCcce---------eEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCC
Confidence            99999999987532111         12223356788999999999999 5899999999999999853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-33  Score=265.68  Aligned_cols=257  Identities=19%  Similarity=0.310  Sum_probs=208.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC-CCCceEEEEeCCCcEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-FKEGHLLSGSDDAQICL  205 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~i  205 (424)
                      ....++++|+...++++|+.+|.|+||++......      ......+.+|...|++++|+| ++. +|++|+.||.|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~------~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~v  108 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV------DKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMV  108 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC------CTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC------CCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEE
Confidence            45568899987666777899999999999652111      123445788999999999999 555 8999999999999


Q ss_pred             EeCCCCCCCCcc-cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCeeEEEec
Q 014433          206 WDINAAPKNKSL-EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLAFN  282 (424)
Q Consensus       206 wd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~~~  282 (424)
                      ||+..+...... .++..+.+|...|.+++|+|++..+|++++.||.|++||+++++.   +..+  ..|...|++++|+
T Consensus       109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA---VLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE---EEEECTTTCCSCEEEEEEC
T ss_pred             EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc---cEEEecCCCCCceEEEEEC
Confidence            999876432211 345667889999999999999877888999999999999998653   6666  6799999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEe-cCCCCC-EEEEEEcCCCCcEEEEE---ECCCeEEEeeCCCCCcccCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEE-VFQVGWNPKNETILASC---CLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~h~~~-v~~~~~sp~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      |++. +|++++.||.|++||+++ +..+..+ ..|... +.+++|+|++. +|++|   +.|+.|++||++....     
T Consensus       186 ~~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~-----  257 (402)
T 2aq5_A          186 RDGA-LICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE-----  257 (402)
T ss_dssp             TTSS-CEEEEETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS-----
T ss_pred             CCCC-EEEEEecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC-----
Confidence            9888 699999999999999998 6777777 678776 89999999985 78888   6899999999987542     


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                             ........|...+..++|+|++.+++++++.||.|++|++.++.
T Consensus       258 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          258 -------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             -------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             -------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence                   11222235667799999999999655677789999999998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.2e-33  Score=261.05  Aligned_cols=254  Identities=13%  Similarity=0.203  Sum_probs=201.9

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +|++|+.||.|++||+..          ......+.+|...|.+++|+|++. +|++++.||.
T Consensus       137 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~  204 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKD----------GSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGT  204 (420)
T ss_dssp             SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT----------CCCCEEEECCSSCEEEEEEETTTT-EEEEEETTSC
T ss_pred             cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCC----------CcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCc
Confidence            7999999999999886 899999999999999987          455678899999999999999887 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeec---C---------------------CccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKV---H---------------------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~---~---------------------~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      |++||++++..      +..+..   +                     ...+.+++|+|++. ++++++.||.|++||++
T Consensus       205 v~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~  277 (420)
T 3vl1_A          205 IRLWECGTGTT------IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVF  277 (420)
T ss_dssp             EEEEETTTTEE------EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETT
T ss_pred             EEEeECCCCce------eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECC
Confidence            99999987632      222222   2                     34555666678775 56799999999999999


Q ss_pred             CCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEE
Q 014433          259 TPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       259 ~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~  336 (424)
                      ++..   +..+ ..|...|++++|+|++..+|++|+.||.|++||+++...++..+.. |...|.++.|. ++ .+|+++
T Consensus       278 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~  352 (420)
T 3vl1_A          278 SKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSS  352 (420)
T ss_dssp             TCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEE
T ss_pred             CCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEe
Confidence            8663   3333 4578899999999999867999999999999999986666777776 67788888665 55 489999


Q ss_pred             ECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC---cEEEEEeCCCcEEEEecCC
Q 014433          337 CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED---WVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       337 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~i~vw~~~~  406 (424)
                      +.|+.|++|++...........     ........+|...|.+++|+|+++   .++ +++.+|.+.+|++..
T Consensus       353 ~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~-a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          353 GFDTSIKLDIISDPESERPAIE-----FETPTFLVSNDDAVSQFCYVSDDESNGEVL-EVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTTEEEEEEEECCTTCCSCEEC-----TTSCEEECCSSCCCCEEEEECCSSSSCEEE-EEETTTEEEEEESCC
T ss_pred             cCCccEEEEeccCCCCCcccee-----ccCccEEccCCcceEEEEEccCCCCcceEE-EEcCCceEEEEeccC
Confidence            9999999999987433221110     011233567888999999999988   545 456789999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.5e-33  Score=283.63  Aligned_cols=250  Identities=24%  Similarity=0.359  Sum_probs=216.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|+++ +||+|+.+|.|+|||+.+          ......+.+|...|.+++|+|++. +|++|+.|
T Consensus         9 ~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d   76 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYET----------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDD   76 (814)
T ss_dssp             EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETT
T ss_pred             eecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCC----------CceEEEEecCCCcEEEEEEeCCCC-EEEEEeCC
Confidence            357999999999999987 899999999999999987          456678889999999999999988 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |.|++||+.++.      .+..+.+|...|++++|+|+++. +++++.||.|++||++++..  ....+..|...|.+++
T Consensus        77 g~i~vw~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~v~~~~  147 (814)
T 3mkq_A           77 FRIRVFNYNTGE------KVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWA--LEQTFEGHEHFVMCVA  147 (814)
T ss_dssp             SEEEEEETTTCC------EEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSE--EEEEEECCSSCEEEEE
T ss_pred             CeEEEEECCCCc------EEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCce--EEEEEcCCCCcEEEEE
Confidence            999999998763      45667789999999999999875 56999999999999987632  3566778999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-CCCEEEEEEcC--CCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNP--KNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      |+|.+..+|++++.||.|++||++. ..+...+..+ ...+.+++|+|  ++. +|++++.||.|++||+...       
T Consensus       148 ~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~-------  218 (814)
T 3mkq_A          148 FNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK-------  218 (814)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTT-------
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCC-------
Confidence            9994334799999999999999987 4555555544 48999999999  775 7999999999999999764       


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                             ..+..+.+|...|.+++|+|+++ +|++++.||.|++|++.++.
T Consensus       219 -------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          219 -------SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             -------EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCS
T ss_pred             -------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Confidence                   55777888999999999999999 79999999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-33  Score=265.69  Aligned_cols=244  Identities=15%  Similarity=0.143  Sum_probs=195.5

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..+....|+|++. +||+|+.||.|+|||+..          ......+.+|...|.+++|+|++. +|++|+.||.|++
T Consensus        98 ~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~i  165 (420)
T 3vl1_A           98 DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNF----------NLQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKI  165 (420)
T ss_dssp             CEEEEEEECSSSC-EEEEEETTSCEEEECTTS----------CEEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred             CceEEEEEecCCC-EEEEEECCCCEEEEeCCC----------cceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEE
Confidence            3444557888876 899999999999999876          344455578999999999999887 8999999999999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec---c----------
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA---H----------  272 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~---~----------  272 (424)
                      ||+.++.      .+..+.+|...|.+++|+|++. +|++++.||.|++||+++++.   +..+..   +          
T Consensus       166 wd~~~~~------~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          166 WSVKDGS------NPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTT---IHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             EETTTCC------CCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEE---EEEECBTTBTTCCEEEEEEE
T ss_pred             EeCCCCc------CceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCce---eEEeecCCCCCCCccEEEEe
Confidence            9998764      3455678999999999999986 556999999999999998653   444432   2          


Q ss_pred             -----------CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          273 -----------QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       273 -----------~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                                 ...+.+++|+|++. +|++|+.||.|++||+++..........|...|.+++|+|+++.+|++++.||.
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  314 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM  314 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             cCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe
Confidence                       34555666788887 699999999999999998444444445688999999999999768999999999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      |++||++...             .++..+.+ |...|..+.|. ++. +|++++.|+.|++|++...
T Consensus       315 i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          315 LAQWDLRSPE-------------CPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEETTCTT-------------SCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCT
T ss_pred             EEEEEcCCCc-------------CchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCC
Confidence            9999998753             22333444 66778888664 666 7999999999999999873

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=243.23  Aligned_cols=253  Identities=22%  Similarity=0.410  Sum_probs=207.4

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +.+....|...|++++|+|+++ +||+|+.||+|+||++.+          .+....+.+|...+.++.+.+  . ++++
T Consensus        59 ~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~----------~~~~~~~~~h~~~~~~~~~~~--~-~l~s  124 (318)
T 4ggc_A           59 QLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQ----------QKRLRNMTSHSARVGSLSWNS--Y-ILSS  124 (318)
T ss_dssp             EEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTT----------TEEEEEEECCSSCEEEEEEET--T-EEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCC----------ceeEEEecCccceEEEeecCC--C-EEEE
Confidence            3344446889999999999886 899999999999999987          466778889999888777653  4 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-CCeeeeeccCCC
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSE  275 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~  275 (424)
                      ++.++.+++|+.....     ..+..+.+|...+..+.+++.+. ++++++.||.|++||+++++.. ........+...
T Consensus       125 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  198 (318)
T 4ggc_A          125 GSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  198 (318)
T ss_dssp             EETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred             EecCCceEeeecCCCc-----eeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence            9999999999987653     24566778999999999999987 5569999999999999986532 234455678889


Q ss_pred             eeEEEecCCCCeEEE--EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE-EECCCeEEEeeCCCCCc
Q 014433          276 VNCLAFNPFNEWILA--TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS-CCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       276 v~~v~~~~~~~~~l~--tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s-~~~dg~i~iwd~~~~~~  352 (424)
                      |.+++++|.+..++.  +++.++.|++||.+. .... ....+...+..+.|+|.+..++++ ++.|+.|+|||++++  
T Consensus       199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--  274 (318)
T 4ggc_A          199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--  274 (318)
T ss_dssp             EEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--
T ss_pred             eEEEEecCCCCcEEEEEecCCCCEEEEEeccc-cccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC--
Confidence            999999998876654  556789999999987 3333 334567889999999999754433 337999999999875  


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                                  +++..+.+|.+.|++++|+|+++ +|+|++.||+|+|||+.+
T Consensus       275 ------------~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          275 ------------AKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ------------CEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred             ------------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence                        66788899999999999999999 699999999999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-33  Score=265.07  Aligned_cols=260  Identities=18%  Similarity=0.271  Sum_probs=206.4

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|++++|+|.+..+||+|+.||.|+||++.......   ....+...+.+|...|.+++|+|++..+|++|+.||
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            36999999999999433599999999999999998731111   011567789999999999999999866899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeee--ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCCC-ee
Q 014433          202 QICLWDINAAPKNKSLEAMQIF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSE-VN  277 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~-v~  277 (424)
                      .|++||++++      ..+..+  ..|...|.+++|+|++. +|++++.||.|++||++++..   +..+ ..|... +.
T Consensus       155 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          155 VILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTV---VAEKDRPHEGTRPV  224 (402)
T ss_dssp             CEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEE---EEEEECSSCSSSCC
T ss_pred             EEEEEECCCC------CccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCce---eeeeccCCCCCcce
Confidence            9999999876      344555  67999999999999887 456999999999999998653   5555 577765 89


Q ss_pred             EEEecCCCCeEEEEE---eCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          278 CLAFNPFNEWILATG---STDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      +++|+|++. +|++|   +.|+.|++||+++...++.... .|...+.+++|+|++..++++++.||.|++||+......
T Consensus       225 ~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~  303 (402)
T 2aq5_A          225 HAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF  303 (402)
T ss_dssp             EEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC
T ss_pred             EEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc
Confidence            999999886 78888   7899999999998655454444 577889999999999755556668999999999875310


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                ...+..+. |...|.+++|+|++.+ +++  .++.+++|++.++.+
T Consensus       304 ----------~~~l~~~~-~~~~v~~~~~sp~~~~-~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          304 ----------LHYLSMFS-SKESQRGMGYMPKRGL-EVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             ----------EEEEEEEC-CSSCCSEEEECCGGGS-CGG--GTEEEEEEEEETTEE
T ss_pred             ----------eEeecccc-cCCcccceEEeccccc-cee--cceeEEEEEcCCCcE
Confidence                      12233333 5688999999999984 543  567999999987643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.3e-33  Score=251.70  Aligned_cols=217  Identities=25%  Similarity=0.355  Sum_probs=187.6

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ....++.+|.+.|++++|+|.+..+|++|+.|++|++|++..... ....++..+.+|...|.+++|+|++. ++++|+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-KFGVPVRSFKGHSHIVQDCTLTADGA-YALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-EEEEEEEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-cccccceEEeCCcccEEEEEECCCCC-EEEEEeC
Confidence            334578899999999999998766899999999999999865322 11134567889999999999999987 5569999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      |++|++||+++++.   +..+.+|...|.+++|+|++. +|++|+.|++|++||++.  ..+..+.+|...|.+++|+|.
T Consensus        86 D~~v~~wd~~~~~~---~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A           86 DKTLRLWDVATGET---YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             TSEEEEEETTTTEE---EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC
T ss_pred             CCEEEEEECCCCCe---eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccC
Confidence            99999999998764   778889999999999999988 699999999999999974  678888999999999999995


Q ss_pred             CC-----cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          329 NE-----TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       329 ~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      ..     .+|++++.|+.|++||++..              .....+.+|...|++++|+|+++ +|++++.||.|++||
T Consensus       160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          160 EKADDDSVTIISAGNDKMVKAWNLNQF--------------QIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWN  224 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTT--------------EEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEE
T ss_pred             CCCCCCccEEEEEeCCCEEEEEECCcc--------------hhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEE
Confidence            42     37999999999999999864              55677889999999999999999 799999999999999


Q ss_pred             cCCcc
Q 014433          404 MAENI  408 (424)
Q Consensus       404 ~~~~~  408 (424)
                      +.++.
T Consensus       225 ~~~~~  229 (319)
T 3frx_A          225 LAAKK  229 (319)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            98764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-32  Score=247.46  Aligned_cols=219  Identities=18%  Similarity=0.335  Sum_probs=181.4

Q ss_pred             EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCC
Q 014433          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQ  250 (424)
Q Consensus       172 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg  250 (424)
                      ..+.+|...|.+++|+|++. +|++|+.|++|++||+....    ...+..+.+|.+.|++++|++. ...+|++|+.|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGET----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSC----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCC----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            45678999999999999988 79999999999999997432    1345677899999999999864 235778999999


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC--CCeEEEEEeCCCcEEEEECCCCCC-cceEecCCCCCEEEEEEcC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF--NEWILATGSTDKTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~sp  327 (424)
                      +|++||++++.. ..+..+..|...|++++|+|+  +. +|++|+.|+.|++||++.... ....+.+|...|.+++|+|
T Consensus        78 ~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           78 KVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             EEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             EEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            999999987642 345667789999999999997  55 799999999999999987432 2467788999999999999


Q ss_pred             CC------------CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC--CcEEEEE
Q 014433          328 KN------------ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE--DWVISSV  393 (424)
Q Consensus       328 ~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~  393 (424)
                      ++            ..+|++|+.|+.|+|||++.....          ..+...+.+|...|.+++|+|++  ..+|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------EEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            73            248999999999999999764311          13566788999999999999985  3379999


Q ss_pred             eCCCcEEEEecCCc
Q 014433          394 AEDNILQIWQMAEN  407 (424)
Q Consensus       394 ~~dg~i~vw~~~~~  407 (424)
                      +.|++|+||++...
T Consensus       226 s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          226 SQDRTCIIWTQDNE  239 (297)
T ss_dssp             ETTSCEEEEEESST
T ss_pred             ECCCcEEEEEeCCC
Confidence            99999999999763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=268.21  Aligned_cols=272  Identities=14%  Similarity=0.211  Sum_probs=201.0

Q ss_pred             eccCCceeEEEecC-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          122 INHDGEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       122 ~~h~~~v~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..|.+.|++++|+| ++. +||+|+.||.|+|||+......    ........+ +|...|.+++|+|++. +|++|+.|
T Consensus        60 ~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~----~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~d  132 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVG----EVYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKD  132 (437)
T ss_dssp             TTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTT----CCCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccC----cccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCC
Confidence            46899999999999 776 8999999999999998651110    011223333 5999999999999877 79999999


Q ss_pred             CcEEEEeCC---CCCCCCcc--cceeeee--c--CCccEeeEE--EecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          201 AQICLWDIN---AAPKNKSL--EAMQIFK--V--HEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       201 g~i~iwd~~---~~~~~~~~--~~~~~~~--~--~~~~v~~~~--~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      |.|++||+.   .+......  ..+..+.  .  +...+.++.  +++++. ++++++.||.|++||+++++.   +..+
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~---~~~~  208 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLER---LQII  208 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCE---EEEE
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCee---eEEE
Confidence            999999995   32211100  0111111  1  445566666  445654 677999999999999998664   6667


Q ss_pred             ec--cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcC----CCCcEEEEEECCCeE
Q 014433          270 VA--HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNP----KNETILASCCLGRRL  342 (424)
Q Consensus       270 ~~--~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp----~~~~~l~s~~~dg~i  342 (424)
                      ..  |...|++++|+|++. +|++|+.||.|++||++. +.++..+. .|..+|.+++|+|    ++ .+|++++.||.|
T Consensus       209 ~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i  285 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFL  285 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEE
T ss_pred             ccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcE
Confidence            66  889999999999987 699999999999999998 77788775 7788999997776    34 489999999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeE----------EEcC--CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLF----------IHGG--HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +|||++.+............+....+          .+.+  |...|++++|+ +++ +|++++.|+.|++||+.++..
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGG
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCccc
Confidence            99999876533222111111110000          1223  77789999999 666 799999999999999988753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-32  Score=245.90  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=206.4

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ...+|.+.|++++| |++. +||+|+.||.|++||+..          ......+..|...|.+++|+|++. +|++|+.
T Consensus        13 ~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~   79 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDD----------QWLGTVVYTGQGFLNSVCYDSEKE-LLLFGGK   79 (313)
T ss_dssp             EECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESS----------SEEEEEEEECSSCEEEEEEETTTT-EEEEEET
T ss_pred             HhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCC----------CEEEEEeecCCccEEEEEECCCCC-EEEEecC
Confidence            34579999999999 8776 799999999999999976          445667888999999999999887 8999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      ||.|++|++......   .....+..|...|.+++|+  + .++++++.||.|++||  .   ...+..+..|...+.++
T Consensus        80 dg~i~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~---~~~~~~~~~~~~~v~~~  148 (313)
T 3odt_A           80 DTMINGVPLFATSGE---DPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--E---GSLVYNLQAHNASVWDA  148 (313)
T ss_dssp             TSCEEEEETTCCTTS---CC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--T---TEEEEEEECCSSCEEEE
T ss_pred             CCeEEEEEeeecCCC---CcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--C---CcEEEecccCCCceeEE
Confidence            999999999875432   3345567899999999994  3 3677999999999999  2   22466778899999999


Q ss_pred             EecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          280 AFNP-FNEWILATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       280 ~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      +|.| ++. ++++++.||.|++||.   ......+.. |...|.+++|+|++.  +++++.||.|++||++..       
T Consensus       149 ~~~~~~~~-~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~-------  215 (313)
T 3odt_A          149 KVVSFSEN-KFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG-------  215 (313)
T ss_dssp             EEEETTTT-EEEEEETTSCEEEEET---TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC-------
T ss_pred             EEccCCCC-EEEEEECCCCEEEEec---CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch-------
Confidence            9998 555 7999999999999993   356667776 899999999999984  889999999999999874       


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                             ..+..+.+|...|++++|+|++.  |++++.||.|++||+.++..
T Consensus       216 -------~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          216 -------DVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             -------CEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCE
T ss_pred             -------hhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCce
Confidence                   55777889999999999999994  77889999999999988743

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-31  Score=245.71  Aligned_cols=279  Identities=12%  Similarity=0.120  Sum_probs=223.5

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      +..++.|.|+.          ..++.|+     .+..++++.+.-.                        ..........
T Consensus        13 ~v~~~~~s~~~----------~~l~~~~-----~d~~v~iw~~~~~------------------------~~~~~~~~~~   53 (342)
T 1yfq_A           13 YISDIKIIPSK----------SLLLITS-----WDGSLTVYKFDIQ------------------------AKNVDLLQSL   53 (342)
T ss_dssp             CEEEEEEEGGG----------TEEEEEE-----TTSEEEEEEEETT------------------------TTEEEEEEEE
T ss_pred             cEEEEEEcCCC----------CEEEEEc-----CCCeEEEEEeCCC------------------------Cccccceeee
Confidence            46688999864          3566655     4467888887421                        1123344556


Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeC-CCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCCCCceEEEEeC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDY-SKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      .|...|++++|+|++..+|++|+.||.|++|++ ..           .....+.+  |...|.+++|+| +. +|++++.
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------~~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~  120 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS-----------PSFQALTNNEANLGICRICKYG-DD-KLIAASW  120 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS-----------SSEEECBSCCCCSCEEEEEEET-TT-EEEEEET
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC-----------CceEeccccCCCCceEEEEeCC-CC-EEEEEcC
Confidence            899999999999986427889999999999999 76           22367778  999999999999 65 8999999


Q ss_pred             CCcEEEEeCCC---------CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC-CCCCCCeeee
Q 014433          200 DAQICLWDINA---------APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSV  269 (424)
Q Consensus       200 dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~  269 (424)
                      ||.|++||+++         ...      +..+. |...|.+++|+|++   +++++.|+.|++||++. ... ......
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~------~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-~~~~~~  189 (342)
T 1yfq_A          121 DGLIEVIDPRNYGDGVIAVKNLN------SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-NGTIEE  189 (342)
T ss_dssp             TSEEEEECHHHHTTBCEEEEESC------SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-CCEEEE
T ss_pred             CCeEEEEcccccccccccccCCe------eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-cceeee
Confidence            99999999975         322      22333 78899999999876   66899999999999998 542 223344


Q ss_pred             eccCCCeeEEEecC-CCCeEEEEEeCCCcEEEEECCCC-----CCcceEecCCCC---------CEEEEEEcCCCCcEEE
Q 014433          270 VAHQSEVNCLAFNP-FNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKE---------EVFQVGWNPKNETILA  334 (424)
Q Consensus       270 ~~~~~~v~~v~~~~-~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~h~~---------~v~~~~~sp~~~~~l~  334 (424)
                      ..|...+.+++|+| ++. +|++|+.||.|++||++..     ..+...+..|..         .|.+++|+|++. +|+
T Consensus       190 ~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~  267 (342)
T 1yfq_A          190 SGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLY  267 (342)
T ss_dssp             CSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEE
T ss_pred             cCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEE
Confidence            56888999999999 887 6999999999999999885     377888888865         999999999996 689


Q ss_pred             EEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEeCCCc-EEEEe
Q 014433          335 SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVAEDNI-LQIWQ  403 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~-i~vw~  403 (424)
                      +++.||.|++||+.++              .++..+.+| ...|.+++  |+++ +|++++.||. .+.|.
T Consensus       268 ~~~~dg~i~vwd~~~~--------------~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          268 TAGSDGIISCWNLQTR--------------KKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTSCEEEEETTTT--------------EEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSS
T ss_pred             EecCCceEEEEcCccH--------------hHhhhhhcccCCCceEec--CCCC-eEEEEecCCccccccc
Confidence            9999999999999875              567778888 99999999  9998 7999999998 44333

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.5e-32  Score=258.42  Aligned_cols=248  Identities=20%  Similarity=0.328  Sum_probs=208.6

Q ss_pred             EEEEeccCCce-eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          118 IIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       118 ~~~~~~h~~~v-~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      .....+|.+.| .++.+.  + .+|++|+.||.|++||+.+          ......+.+|...|.+++|+|++  +|++
T Consensus       114 ~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~----------~~~~~~~~~h~~~V~~l~~~~~~--~l~s  178 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSIN----------KKFLLQLSGHDGGVWALKYAHGG--ILVS  178 (464)
T ss_dssp             EEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECSTT--EEEE
T ss_pred             eEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCC----------CcEEEEEeCCCcCEEEEEEcCCC--EEEE
Confidence            34455788774 677774  3 3899999999999999987          45677888999999999999866  7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-CCcEEEEEeCCCeEEEEEcCCCCCCCC----------
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKP----------  265 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~----------  265 (424)
                      |+.||+|++||++++      ..+..+.+|...|.+++|++. +..++++++.||.|++||+++......          
T Consensus       179 ~s~dg~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             EETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             EeCCCCEEEEECCCC------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence            999999999999876      346667889999999999962 335778999999999999997653211          


Q ss_pred             ----------eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          266 ----------VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       266 ----------~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                                +..+.+|...+.++.  +++. ++++|+.||.|++||+++ .+++..+.+|...|.+++|+|++. +|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  327 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERK-RCIS  327 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTT-EEEE
T ss_pred             eeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCC-EEEE
Confidence                      445667888888885  4465 699999999999999998 788899999999999999999986 7999


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |+.||.|++||++++              .++..+.+|...|..++|++  . .|++++.||.|++||+.+..
T Consensus       328 g~~dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~  383 (464)
T 3v7d_B          328 ASMDTTIRIWDLENG--------------ELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYS  383 (464)
T ss_dssp             EETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCC
T ss_pred             EeCCCcEEEEECCCC--------------cEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCc
Confidence            999999999999874              66788899999999999984  4 79999999999999998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-32  Score=251.40  Aligned_cols=252  Identities=12%  Similarity=0.141  Sum_probs=202.2

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +|++|+.||.|+||++....       .......+.+|...|.+++|+|++..+|++|+.||.
T Consensus         9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQA-------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTT-------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCC-------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            6999999999999886 88999999999999998621       011245566899999999999976515999999999


Q ss_pred             EEEEeC-CCCCCCCcccceeeeec--CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC---------CCCCCCeeeee
Q 014433          203 ICLWDI-NAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT---------PSVSKPVQSVV  270 (424)
Q Consensus       203 i~iwd~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~---------~~~~~~~~~~~  270 (424)
                      |++||+ ..+.       ...+..  |...|.+++|+| +. ++++++.|+.|++||+++         ...   +..+.
T Consensus        81 i~~wd~~~~~~-------~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~  148 (342)
T 1yfq_A           81 ILKVDLIGSPS-------FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNTK  148 (342)
T ss_dssp             EEEECSSSSSS-------EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSSS
T ss_pred             EEEEEeccCCc-------eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCe---eeEEe
Confidence            999999 7652       255667  999999999999 54 667999999999999987         543   33333


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC-CCCc-ceEecCCCCCEEEEEEcC-CCCcEEEEEECCCeEEEeeC
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK-ISTA-LHTFDSHKEEVFQVGWNP-KNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~~h~~~v~~~~~sp-~~~~~l~s~~~dg~i~iwd~  347 (424)
                       |...|.+++|+|++   +++++.|+.|++||++. .... ......|...|.+++|+| ++. +|++++.||.|++|++
T Consensus       149 -~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFF  223 (342)
T ss_dssp             -SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEEC
T ss_pred             -eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEE
Confidence             88999999999865   88999999999999997 4433 334556888999999999 885 7999999999999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCC---------CcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTS---------KISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +......        .......+.+|..         .|.+++|+|+++ +|++++.||.|++||+.++.
T Consensus       224 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          224 DDQGDDY--------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CTTCCST--------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE
T ss_pred             cCCCccc--------ccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHh
Confidence            7641000        0133445555544         899999999999 58899999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.5e-32  Score=255.82  Aligned_cols=319  Identities=17%  Similarity=0.260  Sum_probs=220.2

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEE-EE
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII-QQ  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  121 (424)
                      +..+++|.|+.          ..++.|+     .+..|+++.+.-.....                 ....+.+++. ..
T Consensus        30 ~V~~v~~s~~g----------~~la~g~-----~dg~v~iw~~~~~~~~~-----------------~~~~~~~~~~~~~   77 (447)
T 3dw8_B           30 IISTVEFNHSG----------ELLATGD-----KGGRVVIFQQEQENKIQ-----------------SHSRGEYNVYSTF   77 (447)
T ss_dssp             SEEEEEECSSS----------SEEEEEE-----TTSEEEEEEECC----------------------CCCCCCEEEEEEE
T ss_pred             cEEEEEECCCC----------CEEEEEc-----CCCeEEEEEecCCCCCC-----------------cccccceeEeccc
Confidence            45688999865          4566665     45678888874221000                 0011223333 23


Q ss_pred             eccC------------CceeEEEecCCCC-cEEEEEeCCCeEEEEeCCCCCCCC------C---------CCCCC-C---
Q 014433          122 INHD------------GEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKP------P---------LDGAC-S---  169 (424)
Q Consensus       122 ~~h~------------~~v~~~~~~p~~~-~~latg~~dg~v~iw~~~~~~~~~------~---------~~~~~-~---  169 (424)
                      .+|.            +.|++++|+|++. .+|++++.||.|++|++.......      .         ..... .   
T Consensus        78 ~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  157 (447)
T 3dw8_B           78 QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVF  157 (447)
T ss_dssp             ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEE
T ss_pred             ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccc
Confidence            3687            8899999999863 378899999999999986511100      0         00000 0   


Q ss_pred             ----------CcEE-EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee-------eeecCCccEe
Q 014433          170 ----------PDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-------IFKVHEGVVE  231 (424)
Q Consensus       170 ----------~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~  231 (424)
                                +... ..+|...|.+++|+|++. +|++| .||.|++||++....     ...       .+..|...|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~  230 (447)
T 3dw8_B          158 RPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDR-----SFNIVDIKPANMEELTEVIT  230 (447)
T ss_dssp             EEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEE-----EEEEEECCCSSGGGCCCCEE
T ss_pred             cchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCc-----eeeeeecccccccccCcceE
Confidence                      0112 357999999999999887 78888 799999999974311     111       3557999999


Q ss_pred             eEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-CCCeeeeeccCC------------CeeEEEecCCCCeEEEEEeCCCcE
Q 014433          232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQS------------EVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       232 ~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~------------~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      +++|+|++..+|++|+.||.|++||++++.. ...+..+..|..            .|.+++|+|++. +|++++. +.|
T Consensus       231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v  308 (447)
T 3dw8_B          231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSV  308 (447)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEE
T ss_pred             EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeE
Confidence            9999999856788999999999999998763 223566667765            899999999988 6888888 999


Q ss_pred             EEEECCCCCCcceEecCCCCC---------------EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC---
Q 014433          299 KLFDLRKISTALHTFDSHKEE---------------VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE---  360 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---  360 (424)
                      ++||++..+.++..+..|...               +..++|+|++. +|++++.||.|+|||+..+..........   
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  387 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNK  387 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence            999999767888888888642               33499999996 78999999999999998765321000000   


Q ss_pred             ---CCCCe------------eeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          361 ---DGPPE------------LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       361 ---~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                         ..++.            .......+...|..++|+|++. +|++++.++ +++|.-+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEECC
T ss_pred             cccccCCccccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeeccc
Confidence               00000            0000113456789999999999 688877665 8888654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-31  Score=273.38  Aligned_cols=286  Identities=17%  Similarity=0.232  Sum_probs=233.3

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      +..+++|.|+.          ..++.|+     .+..|.++.+.                          .++ .+....
T Consensus        15 ~v~~i~~sp~~----------~~la~~~-----~~g~v~iwd~~--------------------------~~~-~~~~~~   52 (814)
T 3mkq_A           15 RVKGIDFHPTE----------PWVLTTL-----YSGRVEIWNYE--------------------------TQV-EVRSIQ   52 (814)
T ss_dssp             CEEEEEECSSS----------SEEEEEE-----TTSEEEEEETT--------------------------TTE-EEEEEE
T ss_pred             ceEEEEECCCC----------CEEEEEe-----CCCEEEEEECC--------------------------CCc-eEEEEe
Confidence            36688999976          4566665     34567777541                          111 222334


Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|++++|+|++. +||+|+.||.|+||++.+          ......+.+|...|.+++|+|+++ +|++++.||.
T Consensus        53 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~  120 (814)
T 3mkq_A           53 VTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNT----------GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLT  120 (814)
T ss_dssp             CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred             cCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCC----------CcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCE
Confidence            6999999999999886 899999999999999987          456778889999999999999988 7999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEe
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAF  281 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~  281 (424)
                      |++||+.++.     .....+.+|...|.+++|+|.+..++++++.||.|++||++.+..   ...+.. +...+.+++|
T Consensus       121 i~vw~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~  192 (814)
T 3mkq_A          121 VKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDY  192 (814)
T ss_dssp             EEEEEGGGTS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEE
T ss_pred             EEEEECCCCc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEE
Confidence            9999997642     245567789999999999994445778999999999999987654   444444 4489999999


Q ss_pred             cC--CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc
Q 014433          282 NP--FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA  359 (424)
Q Consensus       282 ~~--~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  359 (424)
                      +|  ++. +|++|+.||.|++||+++ +.++..+..|...|.+++|+|+++ +|++++.||.|++||+..+         
T Consensus       193 ~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---------  260 (814)
T 3mkq_A          193 YPLPDKP-YMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY---------  260 (814)
T ss_dssp             CCSTTCC-EEEEECTTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC---------
T ss_pred             EECCCCC-EEEEEeCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------
Confidence            99  777 699999999999999998 678888999999999999999996 7999999999999999874         


Q ss_pred             CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                           ..+..+..|...+.+++|+|++..++++++.++.+.+|++...
T Consensus       261 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          261 -----KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             -----SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             -----cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence                 5567778888899999999998765444555777999987654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=252.89  Aligned_cols=248  Identities=15%  Similarity=0.235  Sum_probs=196.6

Q ss_pred             EeccCCceeEEEecCCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~--~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ...|.+.|++++|+|++  ..+||+|+.||.|+||++..        ........+.+|...|.+++|+|++. +|++++
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~  105 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--------SGQTIPKAQQMHTGPVLDVCWSDDGS-KVFTAS  105 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--------TSCEEEEEEEECSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--------CCceeEEEeccccCCEEEEEECcCCC-EEEEEc
Confidence            34799999999999985  45899999999999999986        11233367888999999999999887 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEE--ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC---
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ---  273 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~---  273 (424)
                      .||.|++||+++..       ......|...|.+++|  ++++. +|++++.||.|++||+++++.   +..+..+.   
T Consensus       106 ~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~  174 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQ-------AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNP---MMVLQLPERCY  174 (368)
T ss_dssp             TTSEEEEEETTTTE-------EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSC---SEEEECSSCEE
T ss_pred             CCCcEEEEEcCCCC-------ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcE---EEEEecCCCce
Confidence            99999999998762       2235569999999999  77765 667999999999999998654   33332221   


Q ss_pred             --------------------------------------CCeeEEEecCCCC---eEEEEEeCCCcEEEEECCCCC--Ccc
Q 014433          274 --------------------------------------SEVNCLAFNPFNE---WILATGSTDKTVKLFDLRKIS--TAL  310 (424)
Q Consensus       274 --------------------------------------~~v~~v~~~~~~~---~~l~tg~~dg~i~iwd~~~~~--~~~  310 (424)
                                                            ..+.++++.+...   ..+++|+.||.|++||++...  ..+
T Consensus       175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          175 CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             EEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence                                                  2334444433222   238999999999999999743  456


Q ss_pred             eEecCCCC------------CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          311 HTFDSHKE------------EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       311 ~~~~~h~~------------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      ..+..|..            .|++++|+|++. +|++++.||.|++||+..+              .++..+.+|...|.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~  319 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDAR--------------TKLKTSEQLDQPIS  319 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTT--------------EEEEECCCCSSCEE
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCC--------------cEEEEecCCCCCce
Confidence            77777776            799999999996 7999999999999999874              56778889999999


Q ss_pred             eEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          379 DFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      +++|+|+++ +|++++.|+..+.|++
T Consensus       320 ~~~~s~~g~-~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          320 ACCFNHNGN-IFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEECTTSS-CEEEEECCCSTTCGGG
T ss_pred             EEEECCCCC-eEEEEecccccccccc
Confidence            999999999 5888888876555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-31  Score=253.39  Aligned_cols=249  Identities=17%  Similarity=0.267  Sum_probs=206.6

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC--CCCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK--FKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~  198 (424)
                      ..+|.+.|.+++|+|++  ++++|+.||+|++||+.+          ......+.+|...|.+++|++  ++. +|++|+
T Consensus       158 ~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s  224 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK----------GCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGS  224 (464)
T ss_dssp             ECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEEESSSCE-EEEEEE
T ss_pred             EeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCC----------CcEEEEECCCCCccEEEEEecCCCCC-EEEEEc
Confidence            34799999999999976  799999999999999987          455678889999999999995  344 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcc-----------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC
Q 014433          199 DDAQICLWDINAAPKNKSL-----------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS  261 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~  261 (424)
                      .||.|++||+.+.......                 .....+.+|...|.++.  +++. ++++++.||.|++||+++++
T Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMK  301 (464)
T ss_dssp             TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTE
T ss_pred             CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCc
Confidence            9999999999876533211                 02445677888888885  4454 66799999999999999865


Q ss_pred             CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                         .+..+.+|...|.+++|+|++. .+++|+.||.|++||+++ ++++..+.+|...|.+++|++   .+|++++.||.
T Consensus       302 ---~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~  373 (464)
T 3v7d_B          302 ---CLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLSD---KFLVSAAADGS  373 (464)
T ss_dssp             ---EEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECS---SEEEEEETTSE
T ss_pred             ---EEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCc
Confidence               3777888999999999999988 699999999999999998 788999999999999999984   47999999999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |++||++...              ..... .|...+..++|++++. ++++++ ||.|++||+.++.+.
T Consensus       374 v~vwd~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          374 IRGWDANDYS--------------RKFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEEETTTCC--------------EEEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEE
T ss_pred             EEEEECCCCc--------------eeeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEE
Confidence            9999998742              22222 3556678889999999 688877 899999999988654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=263.51  Aligned_cols=259  Identities=12%  Similarity=0.163  Sum_probs=190.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------------CCCceeEEE--e
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------------HSTEGYGLS--W  186 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~------------h~~~v~~l~--~  186 (424)
                      .+.|.+.|++++|+|++. +|++|+.||.|++||+....       .......+.+            +...+.++.  +
T Consensus       107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  178 (437)
T 3gre_A          107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQ-------QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV  178 (437)
T ss_dssp             EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEE-------ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred             eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEecccc-------CCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence            346999999999999876 89999999999999995200       0111222221            445566666  4


Q ss_pred             cCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec--CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       187 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      ++++. +|++|+.||.|++||+++..      .+..+..  |...|++++|+|++. +|++|+.||.|++||++++..  
T Consensus       179 ~~~~~-~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~--  248 (437)
T 3gre_A          179 NEEKS-LLVALTNLSRVIIFDIRTLE------RLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL--  248 (437)
T ss_dssp             CSSCE-EEEEEETTSEEEEEETTTCC------EEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE--
T ss_pred             cCCCC-EEEEEeCCCeEEEEeCCCCe------eeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE--
Confidence            46565 89999999999999998763      4555666  889999999999976 567999999999999998553  


Q ss_pred             Ceeeee-ccCCCeeEEEecC----CCCeEEEEEeCCCcEEEEECCCCCCcceEecC------------------------
Q 014433          265 PVQSVV-AHQSEVNCLAFNP----FNEWILATGSTDKTVKLFDLRKISTALHTFDS------------------------  315 (424)
Q Consensus       265 ~~~~~~-~~~~~v~~v~~~~----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------------------------  315 (424)
                       +..+. .|..+|++++|+|    ++. +|++|+.||.|++||+++ +..+..+.+                        
T Consensus       249 -~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (437)
T 3gre_A          249 -IRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG  325 (437)
T ss_dssp             -EEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred             -EEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecc
Confidence             55554 6778999996665    454 799999999999999997 455444442                        


Q ss_pred             --CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC-----------------------CCeeeEEE
Q 014433          316 --HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG-----------------------PPELLFIH  370 (424)
Q Consensus       316 --h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~~  370 (424)
                        |...|++++|+ ++ .+|++++.|+.|++||+..+............                       ........
T Consensus       326 ~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (437)
T 3gre_A          326 IRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS  403 (437)
T ss_dssp             CCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred             cccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence              55678899999 55 58999999999999999887644322211000                       00011122


Q ss_pred             cCCCCCcceEEeCCC--CCcEEEEEeCCCcEEEEe
Q 014433          371 GGHTSKISDFSWNPC--EDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       371 ~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~vw~  403 (424)
                      ..|...|++++|+++  +. +|++++.||.|+||+
T Consensus       404 ~~h~~~I~~i~~~~~~~~~-~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          404 LYHHDIINSISTCEVDETP-LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ---CCCEEEEEEEESSSSE-EEEEEETTSCEEEEC
T ss_pred             cccccceeeEeeeccCCce-EEEEEcCCceEEEeC
Confidence            348999999999998  55 899999999999995

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.8e-32  Score=288.22  Aligned_cols=249  Identities=18%  Similarity=0.341  Sum_probs=215.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....+|.+.|++++|+|+++ ++|+|+.||.|+|||+.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~----------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~  676 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAET----------GEKLLDIKAHEDEVLCCAFSSDDS-YIATCS  676 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------CCEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             EEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCC----------CCEEEEeccCCCCEEEEEEecCCC-EEEEEe
Confidence            34558999999999999987 899999999999999987          466778899999999999999887 899999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC-CcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      .||.|++||+.++      ..+..+.+|...|.+++|+|++ ..++++|+.||.|++||++++..   +..+.+|...|+
T Consensus       677 ~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~h~~~v~  747 (1249)
T 3sfz_A          677 ADKKVKIWDSATG------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC---RNTMFGHTNSVN  747 (1249)
T ss_dssp             TTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE---EEEECCCSSCEE
T ss_pred             CCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch---hheecCCCCCEE
Confidence            9999999999876      3466778899999999999963 45778999999999999998764   777889999999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE---------------------------------------------
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT---------------------------------------------  312 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---------------------------------------------  312 (424)
                      +++|+|++. +|++|+.||.|++||+++. .....                                             
T Consensus       748 ~~~~sp~~~-~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          748 HCRFSPDDE-LLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEECSSTT-EEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEecCCC-EEEEEECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            999999998 6999999999999998752 11111                                             


Q ss_pred             ----------ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433          313 ----------FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW  382 (424)
Q Consensus       313 ----------~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  382 (424)
                                ..+|...|.+++|+|++. ++++++.||.|++||+...              ..+..+.+|...|.+++|
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~--------------~~~~~~~~h~~~v~~v~~  890 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSR--------------LKVADCRGHLSWVHGVMF  890 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTT--------------EEEEEECCCSSCEEEEEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC--------------ceeeecCCCccceEEEEE
Confidence                      126778899999999985 7889999999999999864              567788899999999999


Q ss_pred             CCCCCcEEEEEeCCCcEEEEecCC
Q 014433          383 NPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       383 ~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +|+++ .|++++.||.|++|++..
T Consensus       891 spdg~-~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          891 SPDGS-SFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CTTSS-EEEEEETTSCEEEEEHHH
T ss_pred             CCCCC-EEEEEeCCCeEEEEEccc
Confidence            99999 689999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-32  Score=247.35  Aligned_cols=255  Identities=19%  Similarity=0.241  Sum_probs=196.7

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      +..+++|.|+.          ..++.|+     .+..++++.+.-.                         ....+....
T Consensus        15 ~V~~v~~s~~g----------~~lasgs-----~D~~v~lwd~~~~-------------------------~~~~~~~l~   54 (316)
T 3bg1_A           15 MIHDAQMDYYG----------TRLATCS-----SDRSVKIFDVRNG-------------------------GQILIADLR   54 (316)
T ss_dssp             CEEEEEECGGG----------CEEEEEE-----TTTEEEEEEEETT-------------------------EEEEEEEEE
T ss_pred             eEEEeeEcCCC----------CEEEEEe-----CCCeEEEEEecCC-------------------------CcEEEEEEc
Confidence            46788998875          4566555     5678999887411                         011223345


Q ss_pred             ccCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCC-CceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-EGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~d  200 (424)
                      +|.+.|++++|+|. ...+||+|+.|++|+|||+..        +.......+.+|...|.+++|+|+. ..+|++|+.|
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~--------~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D  126 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN--------GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD  126 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS--------SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC--------CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC
Confidence            79999999999863 234899999999999999976        2234456778999999999999973 2379999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCC----------------CcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH----------------EYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      |.|++||++....   ......+.+|...|.+++|+|+.                ..+|++|+.|+.|++||++......
T Consensus       127 ~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          127 GAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             SCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred             CCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence            9999999976421   12234456789999999999973                2467899999999999997643223


Q ss_pred             CeeeeeccCCCeeEEEecCCC---CeEEEEEeCCCcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          265 PVQSVVAHQSEVNCLAFNPFN---EWILATGSTDKTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~---~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      .+..+.+|...|++++|+|++   ..+||+|+.||+|++||++...   .....+..|...|.+++|+|++. +||+++.
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~  282 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGG  282 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEES
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcC
Confidence            456678899999999999986   2479999999999999997621   12345567889999999999996 7999999


Q ss_pred             CCeEEEeeCCC
Q 014433          339 GRRLMVWDLSR  349 (424)
Q Consensus       339 dg~i~iwd~~~  349 (424)
                      |+.|+||+...
T Consensus       283 D~~v~lw~~~~  293 (316)
T 3bg1_A          283 DNKVTLWKESV  293 (316)
T ss_dssp             SSCEEEEEECT
T ss_pred             CCeEEEEEECC
Confidence            99999999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.6e-32  Score=255.39  Aligned_cols=238  Identities=8%  Similarity=0.012  Sum_probs=167.3

Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC--------CCCceEEEEeCCCcEEEEeCC
Q 014433          138 PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK--------FKEGHLLSGSDDAQICLWDIN  209 (424)
Q Consensus       138 ~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~  209 (424)
                      ..+||+|+.|++|+|||.......     .......+.+|.+.|++++|+|        ++. +|++|+.|++|+|||+.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~-----~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETII-----TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEE-----EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccc-----eeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECC
Confidence            358999999999999998761100     0011223568999999999997        454 89999999999999997


Q ss_pred             CCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe----------------------e
Q 014433          210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV----------------------Q  267 (424)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~----------------------~  267 (424)
                      +.      .....+..|...|.+++|+|++..+|++++.||+|++||++++......                      .
T Consensus       175 ~~------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          175 DE------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             TT------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             CC------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            65      2345566789999999999998878899999999999999876532111                      1


Q ss_pred             eeeccCCCeeEEEec-CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEE------------------EEcC-
Q 014433          268 SVVAHQSEVNCLAFN-PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV------------------GWNP-  327 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~-~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~------------------~~sp-  327 (424)
                      ...+|...+.++.|. |++. .|++++.|+++++||++. .+....+..|...+..+                  .|+| 
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             ecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence            123577889999987 6776 699999999999999986 44444444444333333                  3333 


Q ss_pred             CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .+..++++|+.||.|+|||+..+              .......+|...|.+++|+|+|+ +|++++.+| +.+|++.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~--------------~~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEK--------------DSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCT--------------TCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEG
T ss_pred             CCCEEEEEECCCCEEEEEECCCC--------------cEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEe
Confidence            33446778888999999999875              33444567788999999999999 688888766 6666653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-31  Score=249.97  Aligned_cols=248  Identities=21%  Similarity=0.327  Sum_probs=201.6

Q ss_pred             EEEEEeccCCc--eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceeEEEecCCCCce
Q 014433          117 QIIQQINHDGE--VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       117 ~~~~~~~h~~~--v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~  193 (424)
                      .++..-+|...  +.++.|++  . .+++++.||.|++|++.+          ......+.. |...|.+++|+|++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~--~-~l~~~~~d~~v~lw~~~~----------~~~~~~~~~~~~~~v~~v~~s~~~~-~  148 (401)
T 4aez_A           83 RVLDAPGIIDDYYLNLLDWSN--L-NVVAVALERNVYVWNADS----------GSVSALAETDESTYVASVKWSHDGS-F  148 (401)
T ss_dssp             EEEECTTCCCCTTCBCEEECT--T-SEEEEEETTEEEEEETTT----------CCEEEEEECCTTCCEEEEEECTTSS-E
T ss_pred             eeeeCCCCcCCceEEEEeecC--C-CEEEEECCCeEEEeeCCC----------CcEeEeeecCCCCCEEEEEECCCCC-E
Confidence            34444456654  45566665  3 366678899999999987          233344443 889999999999887 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      |++|+.||.|++||+.++      ..+..+.+|...|.+++|++   .++++++.||.|++||++....  .+..+..|.
T Consensus       149 l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~  217 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQ------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH--QIGTLQGHS  217 (401)
T ss_dssp             EEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--EEEEEECCS
T ss_pred             EEEECCCCeEEEEECcCC------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc--eeeEEcCCC
Confidence            999999999999999876      34566778999999999953   3678999999999999985442  467778899


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE--CCCeEEEeeCCCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRID  351 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~  351 (424)
                      ..|.+++|+|++. +|++|+.||.|++||+++ ..++..+..|...|.+++|+|++..++++++  .|+.|++||+..+ 
T Consensus       218 ~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-  294 (401)
T 4aez_A          218 SEVCGLAWRSDGL-QLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-  294 (401)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-
T ss_pred             CCeeEEEEcCCCC-EEEEEeCCCeEEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-
Confidence            9999999999887 699999999999999998 6788889999999999999999888888876  7999999999875 


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEE--EeCCCcEEEEecCCc
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISS--VAEDNILQIWQMAEN  407 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s--~~~dg~i~vw~~~~~  407 (424)
                                   ..+..+. +...|.+++|+|++++ +++  |+.||.|++|++.++
T Consensus       295 -------------~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          295 -------------ARVNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             -------------CEEEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETT
T ss_pred             -------------CEEEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCc
Confidence                         3344443 5567999999999995 555  338999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.6e-33  Score=261.98  Aligned_cols=220  Identities=14%  Similarity=0.221  Sum_probs=180.5

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .......+|...|++|+|+|.+..+||+|+.||.|+|||+.....    .....+.+|.+.|++|+|+|.+..+|++|+.
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~----~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~  185 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK----PTFIKGIGAGGSITGLKFNPLNTNQFYASSM  185 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC----CEEECCCSSSCCCCEEEECSSCTTEEEEECS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc----eeEEEccCCCCCEEEEEEeCCCCCEEEEEeC
Confidence            334567789999999999998777899999999999999987643    2234456899999999999966667889999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      ||+|++||+++... ..+.....+...+.+++|+|++. +|++|+.||.|++||++.  +.+..+.+|...|++++|+|+
T Consensus       186 D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          186 EGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             SSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTT
T ss_pred             CCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCC
Confidence            99999999986431 11112223445688999999988 799999999999999974  667888999999999999999


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      ++.+|++++.|+.|+|||++......           .+....+|...|++++|+|++. +|++++.||.|+||++.++.
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~-----------~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKA-----------SFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSS-----------CCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS
T ss_pred             CceEEEEecCcceeeEEecccccccc-----------eEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc
Confidence            98899999999999999998764322           1223357889999999999999 68999999999999998763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.3e-31  Score=251.42  Aligned_cols=249  Identities=22%  Similarity=0.391  Sum_probs=203.1

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|.+++|  ++ .+|++|+.||.|++||+.+          ......+.+|...|.+++|++   .+|++|+.|
T Consensus       169 ~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d  232 (435)
T 1p22_A          169 LTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT----------GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKD  232 (435)
T ss_dssp             ECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS----------CCEEEEECCCCSCEEEEECCT---TEEEEEETT
T ss_pred             EcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCC----------CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCC
Confidence            3479999999999  44 4899999999999999987          456778889999999999974   379999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |.|++||+.+....   .....+.+|...|.+++|.  + ..+++|+.||.|++||++++..   +..+..|...|.+++
T Consensus       233 g~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~  303 (435)
T 1p22_A          233 RSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCEF---VRTLNGHKRGIACLQ  303 (435)
T ss_dssp             SCEEEEECSSSSCC---EEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEE
T ss_pred             CcEEEEeCCCCCCc---eeeeEecCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCcE---EEEEcCCCCcEEEEE
Confidence            99999999876432   2235567899999999993  4 3667999999999999998664   778889999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      |+  +. ++++|+.||.|++||+++ +.++..+.+|...|.+++|  ++ .+|++|+.||.|++||+.........    
T Consensus       304 ~~--~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~----  372 (435)
T 1p22_A          304 YR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAP----  372 (435)
T ss_dssp             EE--TT-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSC----
T ss_pred             eC--CC-EEEEEeCCCeEEEEECCC-CCEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCcccc----
Confidence            95  44 799999999999999998 7889999999999999999  44 47999999999999999765422111    


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                       ....++..+.+|...|++++|  ++. .|++++.||.|++||+.+...
T Consensus       373 -~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          373 -AGTLCLRTLVEHSGRVFRLQF--DEF-QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             -TTTTEEEEECCCSSCCCCEEE--CSS-CEEECCSSSEEEEEC------
T ss_pred             -ccchheeeccCCCCCeEEEEe--CCC-EEEEEeCCCEEEEEECCCCCC
Confidence             011367788999999999999  566 589999999999999987644

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.9e-32  Score=254.58  Aligned_cols=272  Identities=17%  Similarity=0.275  Sum_probs=211.3

Q ss_pred             eccCCceeEEEecCCCC---------cEEEEEeC----CCeEEEEeCCCCCC--C------------CCC--CCC-CCCc
Q 014433          122 INHDGEVNRARYMPQNP---------FLIATKTV----SAEVYVFDYSKHPS--K------------PPL--DGA-CSPD  171 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~---------~~latg~~----dg~v~iw~~~~~~~--~------------~~~--~~~-~~~~  171 (424)
                      ..-.-+..++.|.|+..         ..+++|+.    ...|.++++.-...  .            ...  ... ....
T Consensus        42 ~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  121 (430)
T 2xyi_A           42 HALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEI  121 (430)
T ss_dssp             EECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEE
T ss_pred             cCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEE
Confidence            33445667888888642         45677664    34677776541000  0            000  000 0112


Q ss_pred             EEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC----CcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       172 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      .....|.+.|++++|+|++..+|++++.||.|++|++......    .....+..+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            4456799999999999985568999999999999999763111    113456677889999999999999886788999


Q ss_pred             CCCeEEEEEcCCCCCC----CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--CcceEecCCCCCEE
Q 014433          248 DDQYLLIWDLRTPSVS----KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVF  321 (424)
Q Consensus       248 ~dg~i~i~d~~~~~~~----~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~  321 (424)
                      .||.|++||++.+...    .+...+..|...|.+++|+|.+..+|++++.||.|++||++...  .++..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            9999999999874321    12455668999999999999766789999999999999999843  67788889999999


Q ss_pred             EEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014433          322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI  401 (424)
Q Consensus       322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v  401 (424)
                      +++|+|+++.+|++|+.||.|++||++...             ..+..+.+|...|++++|+|+++++|++++.||.|+|
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            999999998889999999999999998742             3466677899999999999999878999999999999


Q ss_pred             EecCC
Q 014433          402 WQMAE  406 (424)
Q Consensus       402 w~~~~  406 (424)
                      |++..
T Consensus       349 wd~~~  353 (430)
T 2xyi_A          349 WDLSK  353 (430)
T ss_dssp             EEGGG
T ss_pred             EeCCC
Confidence            99987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.4e-31  Score=239.93  Aligned_cols=211  Identities=25%  Similarity=0.435  Sum_probs=184.3

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      .....+.+|...|++++|+|++. +|++|+.||.|++|++.++.      ....+.+|...|.+++|+|++. +|++++.
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~   85 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWSSDSN-LLVSASD   85 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcc------cchhhccCCCceEEEEEcCCCC-EEEEECC
Confidence            44567889999999999999887 89999999999999997653      3556778999999999999986 5679999


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      ||.|++||++++..   +..+..|...|.+++|+|++. +|++|+.||.|++||+++ ++.+..+..|..+|.+++|+|+
T Consensus        86 d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           86 DKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             TSEEEEEETTTCCE---EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTT
T ss_pred             CCEEEEEECCCCcE---EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CEEEEEecCCCCcEEEEEEcCC
Confidence            99999999998664   777889999999999999987 699999999999999998 6788899999999999999999


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +. +|++++.||.|++||++...              .+.. ...+...+..++|+|+++ .|++++.||.|++||+.++
T Consensus       161 ~~-~l~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          161 GS-LIVSSSYDGLCRIWDTASGQ--------------CLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             SS-EEEEEETTSCEEEEETTTCC--------------EEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTT
T ss_pred             CC-EEEEEeCCCcEEEEECCCCc--------------eeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence            86 79999999999999998753              2333 345667799999999999 6889999999999999876


Q ss_pred             c
Q 014433          408 I  408 (424)
Q Consensus       408 ~  408 (424)
                      .
T Consensus       225 ~  225 (312)
T 4ery_A          225 K  225 (312)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.7e-31  Score=280.58  Aligned_cols=267  Identities=20%  Similarity=0.347  Sum_probs=216.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC-ceEEEEeC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSD  199 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~  199 (424)
                      ...|.+.|.+++|+|++. +||+|+.||.|+|||+.+          ......+.+|...|.+++|+|++. .++++|+.
T Consensus       653 ~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~  721 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSAT----------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN  721 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT----------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEET
T ss_pred             eccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCC----------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeC
Confidence            347999999999999886 899999999999999987          466788899999999999999533 36899999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC---------------
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK---------------  264 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~---------------  264 (424)
                      ||.|++||+.++      .....+.+|...|++++|+|++. .+++++.||.|++||++++....               
T Consensus       722 d~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          722 DFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             TSCEEEEETTSS------SEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             CCeEEEEECCCc------chhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            999999999876      34566778999999999999987 56799999999999997642100               


Q ss_pred             ------------------------------------Ceee-eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014433          265 ------------------------------------PVQS-VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS  307 (424)
Q Consensus       265 ------------------------------------~~~~-~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~  307 (424)
                                                          .+.. ..+|...|.+++|+|++. ++++|+.||.|++||+.+ +
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~-~  872 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDS-R  872 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTT-T
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC-C
Confidence                                                0011 126788999999999988 699999999999999998 7


Q ss_pred             CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC--------------------------------
Q 014433          308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT--------------------------------  355 (424)
Q Consensus       308 ~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------  355 (424)
                      ..+..+.+|...|.+++|+|++. +|++++.||.|++|++........                                
T Consensus       873 ~~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  951 (1249)
T 3sfz_A          873 LKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG  951 (1249)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEE
T ss_pred             ceeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEec
Confidence            88889999999999999999996 799999999999999753210000                                


Q ss_pred             -------------------CC------CcCC--------CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          356 -------------------PE------DAED--------GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       356 -------------------~~------~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                                         ..      ...+        ........+.+|...|++++|+|+++ .|++++.||.|++|
T Consensus       952 ~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A          952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVW 1030 (1249)
T ss_dssp             SSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEE
T ss_pred             CcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEE
Confidence                               00      0000        11234455678999999999999999 58999999999999


Q ss_pred             ecCCccC
Q 014433          403 QMAENIY  409 (424)
Q Consensus       403 ~~~~~~~  409 (424)
                      ++.++..
T Consensus      1031 d~~~~~~ 1037 (1249)
T 3sfz_A         1031 NWQTGDY 1037 (1249)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCce
Confidence            9988754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.5e-31  Score=263.11  Aligned_cols=253  Identities=17%  Similarity=0.297  Sum_probs=211.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-eeEEEecC--CCCceEEEEeC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-GYGLSWSK--FKEGHLLSGSD  199 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~~~~l~s~~~  199 (424)
                      .|.+.|.+++|+|+++ +||+++ ++.|+||++.+..      ........+.+|... |++++|+|  ++. +|++|+.
T Consensus        16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~   86 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGD------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDE   86 (615)
T ss_dssp             CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSC------CSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEET
T ss_pred             CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCC------CccccceEEecCCCceEEEEEECcCCCCC-EEEEecC
Confidence            5889999999999997 777777 8899999998610      011567889999999 99999999  887 8999999


Q ss_pred             CCcEEEEeCCCCCCCC--cccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeeeccC
Q 014433          200 DAQICLWDINAAPKNK--SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      ||.|++||+.++....  .......+..|...|.+++|+|++..+ ++++.+    +.|++||.  +.   .+..+..|.
T Consensus        87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~v~~~d~--~~---~~~~~~~~~  160 (615)
T 1pgu_A           87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL-CVVGEGRDNFGVFISWDS--GN---SLGEVSGHS  160 (615)
T ss_dssp             TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEECCSSCSEEEEETTT--CC---EEEECCSCS
T ss_pred             CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEE-EEeccCCCCccEEEEEEC--CC---cceeeecCC
Confidence            9999999996431100  113455677899999999999999755 577766    78999983  22   467778899


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC---CEEEEEEcCC-CCcEEEEEECCCeEEEeeCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE---EVFQVGWNPK-NETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~---~v~~~~~sp~-~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ..|++++|+|+++.++++++.|+.|++||++. .+.+..+..|..   .|.+++|+|+ +. +|++++.||.|++||++.
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~  238 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS  238 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC
Confidence            99999999999987899999999999999987 678889999999   9999999999 75 799999999999999987


Q ss_pred             CCcccCCCCcCCCCCeeeEEE-c---CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          350 IDEEQTPEDAEDGPPELLFIH-G---GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +              ..+..+ .   +|...|.+++|+ ++. +|++++.|+.|++|++.++.
T Consensus       239 ~--------------~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          239 G--------------EFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             C--------------CEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTE
T ss_pred             C--------------CEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCc
Confidence            5              445555 5   899999999999 888 79999999999999998764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.3e-30  Score=247.30  Aligned_cols=238  Identities=18%  Similarity=0.362  Sum_probs=203.5

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..|...|.++++  ++. ++++|+.||.|++||+.+          ......+.+|...|.+++|  ++. +|++|+.||
T Consensus       130 ~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg  193 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNT----------LECKRILTGHTGSVLCLQY--DER-VIITGSSDS  193 (435)
T ss_dssp             CSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSS----------CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTS
T ss_pred             cCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCC----------CeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCC
Confidence            356778999888  454 899999999999999987          4567788899999999999  344 899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|++||+.++.      .+..+.+|...|.+++|++   ..+++|+.||.|++||++++........+.+|...|.+++|
T Consensus       194 ~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          194 TVRVWDVNTGE------MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             CEEEEESSSCC------EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             eEEEEECCCCc------EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence            99999998763      4566778999999999974   36789999999999999987653333667789999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                        ++. +|++|+.||.|++||+++ +.++..+..|...|.+++|+  + .++++|+.||.|++||++++           
T Consensus       265 --~~~-~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~-----------  326 (435)
T 1p22_A          265 --DDK-YIVSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG-----------  326 (435)
T ss_dssp             --ETT-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTC-----------
T ss_pred             --CCC-EEEEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCC-----------
Confidence              355 699999999999999998 68889999999999999995  3 47999999999999999875           


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                         .++..+.+|...|.+++|  ++. +|++++.||.|++||+..+.
T Consensus       327 ---~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          327 ---ACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             ---CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             ---CEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCC
Confidence               567788899999999999  566 79999999999999997654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-31  Score=269.63  Aligned_cols=264  Identities=13%  Similarity=0.140  Sum_probs=199.5

Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      .+......+|.+.|++++|+|++. +||+|+.||.|+||+...          ... .....|...|.+++|+| +. +|
T Consensus         7 ~~~~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~----------~~~-~~~~~~~~~V~~l~fsp-g~-~L   72 (902)
T 2oaj_A            7 SLAETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQ----------VEV-VIKLEDRSAIKEMRFVK-GI-YL   72 (902)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTT----------CEE-EEECSSCCCEEEEEEET-TT-EE
T ss_pred             eeccccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCC----------cEE-EEEcCCCCCEEEEEEcC-CC-EE
Confidence            355566779999999999999986 899999999999999865          222 22335788999999999 76 89


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe--------
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV--------  266 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~--------  266 (424)
                      ++++.|++|++||+.+++      .+..+. |...|++++|+|++. .+++|+.||.|++||++++... ..        
T Consensus        73 ~S~s~D~~v~lWd~~~~~------~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~  143 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQK------VLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS  143 (902)
T ss_dssp             EEEETTCEEEEEETTTCS------EEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEE-EEEECCHHHH
T ss_pred             EEEECcCeEEEEECCCCc------EEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccc-cceecccccc
Confidence            999999999999998763      334443 678999999999987 5569999999999999876521 00        


Q ss_pred             -eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC------------------CCCEEEEEEcC
Q 014433          267 -QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH------------------KEEVFQVGWNP  327 (424)
Q Consensus       267 -~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h------------------~~~v~~~~~sp  327 (424)
                       ....+|..+|++++|+|++..+|++|+.||.| +||+++ .+++..+..|                  ...|++++|+|
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence             22356889999999999765689999999999 999998 6777777655                  57899999999


Q ss_pred             CCCcEEEEEECCCeEEEeeCCCCCcccC--CCCcC-CCCC-eeeEEEcCCCCCcceEEeC----CCCCcEEEEEeCC---
Q 014433          328 KNETILASCCLGRRLMVWDLSRIDEEQT--PEDAE-DGPP-ELLFIHGGHTSKISDFSWN----PCEDWVISSVAED---  396 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~~-~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~~d---  396 (424)
                      ++. +|++++.||.|++||++++.....  ..... ..+. ........|...|++++|+    |++..+|++++.|   
T Consensus       222 dg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          222 NSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             TSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             CCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            985 899999999999999987643211  00000 0000 0000000245579999995    5554578888766   


Q ss_pred             --CcEEEEec
Q 014433          397 --NILQIWQM  404 (424)
Q Consensus       397 --g~i~vw~~  404 (424)
                        +.+++|++
T Consensus       301 ~~~~v~~~~~  310 (902)
T 2oaj_A          301 DNQSLTMIDL  310 (902)
T ss_dssp             SCCCEEEEEE
T ss_pred             CCceEEEEec
Confidence              37889985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-30  Score=242.61  Aligned_cols=312  Identities=17%  Similarity=0.214  Sum_probs=204.3

Q ss_pred             HHHHhHHhcChhHHHHhhhcCCCCCccEEEEcc-CCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccC
Q 014433           19 EEYKIWKKNTPFLYDLVITHALEWPSLTVEWLP-DREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDAR   97 (424)
Q Consensus        19 ~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p-~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~   97 (424)
                      ...++|..........+..|.  -+..+++|.| +.          ..++.|+     .+..|+++.+.-......    
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~----------~~l~~~~-----~dg~i~iw~~~~~~~~~~----   81 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHG--GGINTLDIEPVEG----------RYMLSGG-----SDGVIVLYDLENSSRQSY----   81 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTC----------CEEEEEE-----TTSCEEEEECCCCSSSSC----
T ss_pred             CcceeeccccCcceeeeeccC--CcEEEEEEecCCC----------CEEEEEc-----CCCeEEEEECCCCcccce----
Confidence            345666544433333333333  3578999999 54          4566665     345688887642110000    


Q ss_pred             CCCCcCCCCCCCCCCCCcEEEEEE------eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCc
Q 014433           98 HYDDDRSDFGGFGCANGKVQIIQQ------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD  171 (424)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~  171 (424)
                                      ........      ..|.+.|.+++|+|++..+|++++.||.|++||+..          ....
T Consensus        82 ----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~  135 (408)
T 4a11_B           82 ----------------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----------LQTA  135 (408)
T ss_dssp             ----------------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT----------TEEE
T ss_pred             ----------------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----------Cccc
Confidence                            00000111      148999999999996656899999999999999987          2333


Q ss_pred             EEEecCCCceeEEEecCCCCc--eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC
Q 014433          172 LRLRGHSTEGYGLSWSKFKEG--HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       172 ~~~~~h~~~v~~l~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  249 (424)
                      ..+ .+...+.++.|++.+..  ++++++.||.|++||++++.      .+..+..|...|.+++|+|++..+|++++.|
T Consensus       136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d  208 (408)
T 4a11_B          136 DVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------CSHILQGHRQEILAVSWSPRYDYILATASAD  208 (408)
T ss_dssp             EEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------CCEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred             eec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------eeeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence            334 47888999999986432  79999999999999998763      3455677999999999999998888899999


Q ss_pred             CeEEEEEcCCCCCCCCeeee---------------eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-------
Q 014433          250 QYLLIWDLRTPSVSKPVQSV---------------VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-------  307 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-------  307 (424)
                      |.|++||++....  .+..+               ..|...|++++|+|++. +|++++.||.|++||+++..       
T Consensus       209 g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~  285 (408)
T 4a11_B          209 SRVKLWDVRRASG--CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYG  285 (408)
T ss_dssp             SCEEEEETTCSSC--CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCC
T ss_pred             CcEEEEECCCCCc--ccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccc
Confidence            9999999987642  12222               56889999999999988 69999999999999987632       


Q ss_pred             ---------------------------------------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          308 ---------------------------------------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       308 ---------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                                                             .++..+.+|...|++++|+|++. +|++++.||.|++||+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEC
T ss_pred             cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCC
Confidence                                                   33556678999999999999995 79999999999999998


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .....              .....+   .....+.+.....+.+.+.++.+++|+..
T Consensus       365 ~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          365 LYEPV--------------PDDDET---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             C--------------------------------------------------------
T ss_pred             CCCcc--------------CCCCce---EeccccccccceeecccCccCceeecCCc
Confidence            75421              111111   12233444444356677889999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-30  Score=257.03  Aligned_cols=253  Identities=15%  Similarity=0.224  Sum_probs=209.0

Q ss_pred             EEeccCCc-eeEEEecC--CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          120 QQINHDGE-VNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       120 ~~~~h~~~-v~~~~~~p--~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ....|.+. |++++|+|  ++. +||+|+.||.|+||++.......  .........+..|...|.+++|+|++. +|++
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~  133 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESN--SVEVNVKSEFQVLAGPISDISWDFEGR-RLCV  133 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGT--EEEEEEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred             EEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccc--cccccccchhhcccccEEEEEEeCCCC-EEEE
Confidence            34579999 99999999  886 89999999999999996410000  001344567788999999999999988 7888


Q ss_pred             EeCC----CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          197 GSDD----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       197 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      ++.+    +.|.+||..        ..+..+.+|...|.+++|+|+++.++++++.|+.|++||+++.+   .+..+..|
T Consensus       134 ~~~~~~~~~~v~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~  202 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSG--------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---FSASDRTH  202 (615)
T ss_dssp             EECCSSCSEEEEETTTC--------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---EEEEECSS
T ss_pred             eccCCCCccEEEEEECC--------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc---eeeeeccc
Confidence            8887    789999842        24566778999999999999998788899999999999998865   36777788


Q ss_pred             CC---CeeEEEecCC-CCeEEEEEeCCCcEEEEECCCCCCcceEe-c---CCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          273 QS---EVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTALHTF-D---SHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       273 ~~---~v~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      ..   .|++++|+|+ +. +|++++.||.|++||+++ ++.+..+ .   .|...|.+++|+ ++. +|++++.|+.|++
T Consensus       203 ~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~  278 (615)
T 1pgu_A          203 HKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRV  278 (615)
T ss_dssp             SCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEE
T ss_pred             CCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEE
Confidence            88   9999999999 76 699999999999999998 6777787 5   899999999999 774 7999999999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCC----CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGH----TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ||++..              ..+..+..+    ...+..+.|. ++. .+++++.||.|++|++.++
T Consensus       279 wd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          279 WDVTTS--------------KCVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             EETTTT--------------EEEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEE
T ss_pred             EECCCC--------------cEEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCC
Confidence            999875              445555554    3567788886 677 6889999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-29  Score=239.95  Aligned_cols=249  Identities=14%  Similarity=0.131  Sum_probs=197.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCC--CCCCCCCCCCCCCCcEEEe--cCCCceeEEEecCCCCceEEEEe
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS--KHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      .|.+.|++++|+|+++.++|+|+.||.|+||++.  .          ......+.  .|...|.+++|+|++. +|++|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~  168 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS----------KNVLKLRKRFCFSKRPNAISIAEDDT-TVIIAD  168 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS----------SSCEEEEEEEECSSCEEEEEECTTSS-EEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC----------CceeeeeecccCCCCceEEEEcCCCC-EEEEEe
Confidence            5778999999999998656999999999999998  4          34445554  6778999999999887 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC---CCcEEEEEeCCCeEEEEEcCCCCCCCCeee-eeccCC
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDDQYLLIWDLRTPSVSKPVQS-VVAHQS  274 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~  274 (424)
                      .+|.|++|++........  ....+.+|...|++++|+|+   +. +|++++.|+.|++||++++..   +.. +.+|..
T Consensus       169 ~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~  242 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI---VDKWLFGHKH  242 (450)
T ss_dssp             TTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC---EEEECCCCSS
T ss_pred             CCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce---eeeeecCCCC
Confidence            999999999987643220  23356779999999999998   64 667999999999999998664   554 458999


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-------------------------CCCCEEEEEEcCCC
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------------------------HKEEVFQVGWNPKN  329 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-------------------------h~~~v~~~~~sp~~  329 (424)
                      .|++++|+ ++. +|++|+.|+.|++||+++ ++++..+..                         ....|.+++|+|++
T Consensus       243 ~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          243 FVSSICCG-KDY-LLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             CEEEEEEC-STT-EEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             ceEEEEEC-CCC-EEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            99999999 787 699999999999999998 566666642                         23579999999999


Q ss_pred             CcEEEEEE-CCCeEEEeeC--CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC-------CCcE
Q 014433          330 ETILASCC-LGRRLMVWDL--SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE-------DNIL  399 (424)
Q Consensus       330 ~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-------dg~i  399 (424)
                      + +|++++ .|+.|+||++  ....           ....+..+.+| ..|.+++|+|+ . ++++.+.       ++.|
T Consensus       320 ~-~l~~~~~~d~~i~iw~~~~~~~~-----------~l~~~~~~~~~-~~v~~~~~~~~-~-~~v~~~~~~~~~~~~~~i  384 (450)
T 2vdu_B          320 P-FVAFFVEATKCIIILEMSEKQKG-----------DLALKQIITFP-YNVISLSAHND-E-FQVTLDNKESSGVQKNFA  384 (450)
T ss_dssp             S-EEEEEETTCSEEEEEEECSSSTT-----------CEEEEEEEECS-SCEEEEEEETT-E-EEEEECCTTCCSSCCCSE
T ss_pred             C-EEEEEECCCCeEEEEEeccCCCC-----------ceeeccEeccC-CceEEEEecCC-c-EEEEEecccCCCCCCcce
Confidence            6 577777 8999999999  3211           12455666777 78999999995 3 4554432       5568


Q ss_pred             EEEecCC
Q 014433          400 QIWQMAE  406 (424)
Q Consensus       400 ~vw~~~~  406 (424)
                      .+|.+..
T Consensus       385 ~v~~~~~  391 (450)
T 2vdu_B          385 KFIEYNL  391 (450)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEc
Confidence            8887753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-30  Score=266.51  Aligned_cols=243  Identities=12%  Similarity=0.164  Sum_probs=181.5

Q ss_pred             CCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEE
Q 014433           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (424)
Q Consensus        41 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (424)
                      .-+..+++|.|+.          ..++.|+     .+..|+++..  .                          ..+...
T Consensus        17 ~~~V~~lafspdg----------~~lAsgs-----~Dg~I~lw~~--~--------------------------~~~~~~   53 (902)
T 2oaj_A           17 SSKPIAAAFDFTQ----------NLLAIAT-----VTGEVHIYGQ--Q--------------------------QVEVVI   53 (902)
T ss_dssp             SSCEEEEEEETTT----------TEEEEEE-----TTSEEEEECS--T--------------------------TCEEEE
T ss_pred             CCCcEEEEECCCC----------CEEEEEe-----CCCEEEEEeC--C--------------------------CcEEEE
Confidence            4456789999986          4566666     3456777632  1                          122344


Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.|...|.+++|+| +. +||+++.|++|+|||+.+          ......+. |...|++++|+|++. +|++|+.|
T Consensus        54 ~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~----------~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~d  119 (902)
T 2oaj_A           54 KLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYS----------QKVLTTVF-VPGKITSIDTDASLD-WMLIGLQN  119 (902)
T ss_dssp             ECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTT----------CSEEEEEE-CSSCEEEEECCTTCS-EEEEEETT
T ss_pred             EcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCC----------CcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCC
Confidence            567889999999999 76 899999999999999987          34445554 778999999999887 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccc-----e-eeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc--
Q 014433          201 AQICLWDINAAPKNKSLEA-----M-QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH--  272 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~--  272 (424)
                      |.|++||+++.... .+..     . ..+.+|.+.|++++|+|++..++++|+.||.| +||++++..   +..+..|  
T Consensus       120 g~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~---~~~~~~~~~  194 (902)
T 2oaj_A          120 GSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI---KQSFIYELP  194 (902)
T ss_dssp             SCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE---EEEECCCBC
T ss_pred             CcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce---EEEEecccC
Confidence            99999999865321 0000     0 23467899999999999866678899999999 999998653   4444333  


Q ss_pred             ----------------CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--e---cC-------------CCC
Q 014433          273 ----------------QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--F---DS-------------HKE  318 (424)
Q Consensus       273 ----------------~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~---~~-------------h~~  318 (424)
                                      ...|++++|+|++. +||+|+.||+|++||+++ ++++..  +   ..             |..
T Consensus       195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~-g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~  272 (902)
T 2oaj_A          195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANS-GHMIMARTVFETEINVPQPDYIRDSSTNAA  272 (902)
T ss_dssp             TTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTT-CCEEEEECSSCSCTTSCCTTCCCCCSSCCC
T ss_pred             CcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC-CcEEEEEeecccccCCCCCcCCCCCccccC
Confidence                            57899999999988 699999999999999998 555442  2   11             345


Q ss_pred             CEEEEEEc----CCCCcEEEEEECC-----CeEEEeeC
Q 014433          319 EVFQVGWN----PKNETILASCCLG-----RRLMVWDL  347 (424)
Q Consensus       319 ~v~~~~~s----p~~~~~l~s~~~d-----g~i~iwd~  347 (424)
                      +|++++|+    |++..+|++|+.|     ..+.+|++
T Consensus       273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            79999995    4444577777665     26777773

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-30  Score=245.86  Aligned_cols=266  Identities=12%  Similarity=0.090  Sum_probs=191.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCC---CCC----CCC--------------------------------
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---SKP----PLD--------------------------------  165 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~---~~~----~~~--------------------------------  165 (424)
                      ..++.+++|+|++. +|+++ .++.|++||+.+..   ...    ...                                
T Consensus         4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999999997 56654 57899999986532   000    000                                


Q ss_pred             --------CCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC--CCCCCCcccceeeee--cCCccEeeE
Q 014433          166 --------GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN--AAPKNKSLEAMQIFK--VHEGVVEDV  233 (424)
Q Consensus       166 --------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~--~~~~~v~~~  233 (424)
                              ....+.....+|...|.+++|+|++..++++|+.||.|++||+.  ++.      .+..+.  .|...|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN------VLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS------CEEEEEEEECSSCEEEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc------eeeeeecccCCCCceEE
Confidence                    00001112235666899999999998435899999999999998  442      233333  577899999


Q ss_pred             EEecCCCcEEEEEeCCCeEEEEEcCCCCCCC-CeeeeeccCCCeeEEEecCC---CCeEEEEEeCCCcEEEEECCCCCCc
Q 014433          234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVNCLAFNPF---NEWILATGSTDKTVKLFDLRKISTA  309 (424)
Q Consensus       234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~  309 (424)
                      +|+|++. .|++++.+|.|++|++.+..... ....+.+|...|++++|+|+   +. +|++|+.|+.|++||+++ +..
T Consensus       156 ~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~  232 (450)
T 2vdu_B          156 SIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQ-CFI  232 (450)
T ss_dssp             EECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESC-TTC
T ss_pred             EEcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCC-Cce
Confidence            9999987 55689999999999998876543 44466789999999999998   65 799999999999999998 566


Q ss_pred             ceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC---------CCCCee--eEEEcCCCCCc
Q 014433          310 LHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE---------DGPPEL--LFIHGGHTSKI  377 (424)
Q Consensus       310 ~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~~~~~h~~~v  377 (424)
                      +.. +.+|...|.+++|+ ++. +|++++.|+.|++||++.+..........         ..++..  ......+...|
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            666 66899999999999 775 89999999999999998864322111000         000000  00000234568


Q ss_pred             ceEEeCCCCCcEEEEEe-CCCcEEEEec
Q 014433          378 SDFSWNPCEDWVISSVA-EDNILQIWQM  404 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~-~dg~i~vw~~  404 (424)
                      .+++|+|++++ |++++ .|+.|+||++
T Consensus       311 ~~i~~~~~~~~-l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          311 SKIIKSKNLPF-VAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEECSSSSE-EEEEETTCSEEEEEEE
T ss_pred             EEEEEeCCCCE-EEEEECCCCeEEEEEe
Confidence            99999999995 66666 8999999999

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=1.5e-29  Score=238.92  Aligned_cols=243  Identities=23%  Similarity=0.406  Sum_probs=199.6

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .++.|+|++++  +||+|. |++|+|||..+        +.......+.+|...|++|+|+|++. +|++|+.||.|++|
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~t--------g~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iW  174 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASS--------GDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLW  174 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTT--------CCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCC--------CCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEE
Confidence            56789999854  788876 89999999987        32333344557888999999999988 89999999999999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE  286 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~  286 (424)
                      |+.++      +.+..+.+|...+.++++++   .++++|+.|+.+++||.+....  .+..+.+|...+..+.|+|++.
T Consensus       175 d~~~~------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~--~~~~~~~h~~~~~~~~~~~~g~  243 (420)
T 4gga_A          175 DVQQQ------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQEVCGLRWAPDGR  243 (420)
T ss_dssp             ETTTT------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTSS
T ss_pred             EcCCC------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce--eeEEecccccceeeeeecCCCC
Confidence            99876      45677888999999998864   4778999999999999987653  4667789999999999999998


Q ss_pred             eEEEEEeCCCcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCCCcEEEEE--ECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          287 WILATGSTDKTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNETILASC--CLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       287 ~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                       ++++++.|+.+++||.+...   ..+.....|...|.+++|+|.+..+++++  +.|++|+|||+.++           
T Consensus       244 -~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----------  311 (420)
T 4gga_A          244 -HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----------  311 (420)
T ss_dssp             -EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----------
T ss_pred             -eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----------
Confidence             69999999999999998633   34667788999999999999988888765  46999999999875           


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCcc
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAENI  408 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~  408 (424)
                         .++..+..| ..+..+.|+|++..++++++ .|+.|+|||+.++.
T Consensus       312 ---~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          312 ---ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             ---EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             ---ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence               445555544 46899999999996554433 79999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.6e-30  Score=237.31  Aligned_cols=251  Identities=16%  Similarity=0.236  Sum_probs=197.0

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEE-EE
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII-QQ  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  121 (424)
                      +..++.|.|+.          ..++.|+     .+..|+++.+.-.                          ..+.. ..
T Consensus        13 ~v~~~~~s~~~----------~~l~~~~-----~dg~i~iw~~~~~--------------------------~~~~~~~~   51 (379)
T 3jrp_A           13 LIHDAVLDYYG----------KRLATCS-----SDKTIKIFEVEGE--------------------------THKLIDTL   51 (379)
T ss_dssp             CEEEEEECSSS----------SEEEEEE-----TTSCEEEEEEETT--------------------------EEEEEEEE
T ss_pred             cEEEEEEcCCC----------CEEEEEE-----CCCcEEEEecCCC--------------------------cceeeeEe
Confidence            47788999875          4566665     3456888887411                          12222 33


Q ss_pred             eccCCceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEE
Q 014433          122 INHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSG  197 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~  197 (424)
                      ..|.+.|++++|+|+  + .+|++|+.||.|++||+..        ........+..|...|.+++|+|+  +. +|+++
T Consensus        52 ~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~  121 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEEN--------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVA  121 (379)
T ss_dssp             CCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEE
T ss_pred             cCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCC--------CceeEeeeecCCCcceEEEEeCCCCCCC-EEEEe
Confidence            469999999999976  5 4899999999999999987        222356777889999999999998  66 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC------------CCcEEEEEeCCCeEEEEEcCCCCCC-C
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR------------HEYLFGSVGDDQYLLIWDLRTPSVS-K  264 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~s~~~dg~i~i~d~~~~~~~-~  264 (424)
                      +.||.|++||++.....    ....+..|...|.+++|+|.            +..+|++++.||.|++||++.+... .
T Consensus       122 ~~d~~i~v~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  197 (379)
T 3jrp_A          122 SSDGKVSVVEFKENGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV  197 (379)
T ss_dssp             ETTSEEEEEECCTTSCC----CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred             cCCCcEEEEecCCCCce----eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee
Confidence            99999999999876432    23346679999999999994            2346779999999999999876531 2


Q ss_pred             CeeeeeccCCCeeEEEecCCC--CeEEEEEeCCCcEEEEECCCCCCc----ceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          265 PVQSVVAHQSEVNCLAFNPFN--EWILATGSTDKTVKLFDLRKISTA----LHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      ....+..|...|++++|+|++  ..+|++++.||.|++||++....+    +.....|...|++++|+|++. +|++++.
T Consensus       198 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~  276 (379)
T 3jrp_A          198 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGG  276 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEES
T ss_pred             eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecC
Confidence            345667899999999999993  347999999999999999974322    222334888999999999996 6889999


Q ss_pred             CCeEEEeeCCC
Q 014433          339 GRRLMVWDLSR  349 (424)
Q Consensus       339 dg~i~iwd~~~  349 (424)
                      ||.|++|++..
T Consensus       277 dg~i~iw~~~~  287 (379)
T 3jrp_A          277 DNKVTLWKENL  287 (379)
T ss_dssp             SSSEEEEEEEE
T ss_pred             CCcEEEEeCCC
Confidence            99999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=2.8e-30  Score=236.39  Aligned_cols=220  Identities=25%  Similarity=0.358  Sum_probs=187.7

Q ss_pred             CCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      .....+|++|.+.|++|+|+|++..+|+||+.||+|++||+........ .+...+.+|...|.+++|+|++. ++++++
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-~~~~~l~~h~~~V~~~~~s~dg~-~l~s~~  105 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-IPQRALRGHSHFVSDVVISSDGQ-FALSGS  105 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-EEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-eeeEEEeCCCCCEEEEEECCCCC-EEEEEc
Confidence            3445678999999999999998666899999999999999987654322 34567788999999999999987 557999


Q ss_pred             CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcC
Q 014433          248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       248 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp  327 (424)
                      .|+.|++|+......   ......+...+..+.+++.+. +|++|+.|+.+++||++...........|...+..++|++
T Consensus       106 ~d~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~  181 (340)
T 4aow_A          106 WDGTLRLWDLTTGTT---TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP  181 (340)
T ss_dssp             TTSEEEEEETTTTEE---EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred             ccccceEEeecccce---eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence            999999999988653   555667788899999999888 5899999999999999875555666778999999999998


Q ss_pred             CCC-cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          328 KNE-TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       328 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ++. .++++++.|+.|++||++..              .++..+.+|...|++++|+|+++ +|++++.||.|++||+.+
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~--------------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANC--------------KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTT
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCC--------------ceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEecc
Confidence            753 36889999999999999874              66778889999999999999999 799999999999999987


Q ss_pred             cc
Q 014433          407 NI  408 (424)
Q Consensus       407 ~~  408 (424)
                      ..
T Consensus       247 ~~  248 (340)
T 4aow_A          247 GK  248 (340)
T ss_dssp             TE
T ss_pred             Cc
Confidence            63

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=2.3e-29  Score=239.43  Aligned_cols=236  Identities=20%  Similarity=0.378  Sum_probs=201.4

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|.+++|++   .++++|+.||.|++||+.+          ......+.+|...|.+++|++  . .|++|+.||
T Consensus       156 ~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg  219 (445)
T 2ovr_B          156 VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET----------GECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDA  219 (445)
T ss_dssp             CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEEET--T-EEEEEETTS
T ss_pred             cCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc----------CcEEEEECCCCCcEEEEEecC--C-EEEEEeCCC
Confidence            47999999999984   3899999999999999987          455678889999999999963  3 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .|++||+.++      ..+..+.+|...|.+++|  ++. .+++++.||.|++||++++.   .+..+..|...|.+++|
T Consensus       220 ~i~~wd~~~~------~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          220 TLRVWDIETG------QCLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETET---CLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             EEEEEESSSC------CEEEEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTE---EEEEECCCSSCEEEEEE
T ss_pred             EEEEEECCCC------cEEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCc---EeEEecCCCCceEEEEE
Confidence            9999999876      345667789999999999  444 56799999999999999865   37777889999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                        ++. .+++|+.||.|++||+++ ++++..+..|...+.++.+++   .+|++++.||.|++||++++           
T Consensus       288 --~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~-----------  349 (445)
T 2ovr_B          288 --DGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG-----------  349 (445)
T ss_dssp             --CSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTC-----------
T ss_pred             --CCC-EEEEEeCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCC-----------
Confidence              455 699999999999999998 788899999999999998864   37999999999999999875           


Q ss_pred             CCCeeeEEEcC---CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          362 GPPELLFIHGG---HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       362 ~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                         ..+..+.+   |...|++++|++  . +|++++.||.|++|++.++..
T Consensus       350 ---~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          350 ---QCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             ---CEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE
T ss_pred             ---cEEEEEccCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCCce
Confidence               44555554   888899999964  4 799999999999999987743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-30  Score=239.94  Aligned_cols=237  Identities=10%  Similarity=0.047  Sum_probs=176.5

Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433          135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN  214 (424)
Q Consensus       135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  214 (424)
                      +++ .++|+|+.||.|++||+.+          ......+.  ...|.++.|+|.    +++++.|++|++|+.......
T Consensus        46 ~d~-~~l~sg~~Dg~v~iwd~~~----------~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           46 YDK-WVCMCRCEDGALHFTQLKD----------SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEE-EEEEEEEETTEEEEEEESS----------SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEE
T ss_pred             CCC-CEEEEECCCCcEEEEECCC----------CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEE
Confidence            344 4899999999999999987          34444454  456888899885    999999999999987642100


Q ss_pred             ---Ccccceeee-ecCCccEeeEEEec--CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCCCeeEEEecCCCCe
Q 014433          215 ---KSLEAMQIF-KVHEGVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       215 ---~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~  287 (424)
                         .....+... ..|...|.+++|+|  ++. ++++++.||.|++||++++..   +... ..+...+++++|+|++. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~-  183 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSL-  183 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSC-
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCC-
Confidence               011112222 25668899999999  876 567999999999999998664   3333 34566899999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcceEecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433          288 ILATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                      +|++|+.||.|++||+++.......+.. |..+|++++|+|++. +|++++ |+.|++||++........          
T Consensus       184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~----------  251 (343)
T 3lrv_A          184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAY----------  251 (343)
T ss_dssp             EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSS----------
T ss_pred             EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceee----------
Confidence            7999999999999999984333378887 999999999999995 788888 559999999986543221          


Q ss_pred             eEEEcCCCCCcc--eEEeCCCCCcEEEEEeC-CCcEEEEecCCc
Q 014433          367 LFIHGGHTSKIS--DFSWNPCEDWVISSVAE-DNILQIWQMAEN  407 (424)
Q Consensus       367 ~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~  407 (424)
                       ..+..|...+.  +++|+|+++ +|++++. |+.++||++...
T Consensus       252 -~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          252 -PTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             -CCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred             -cccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEccc
Confidence             11122333344  599999999 5777777 999999999654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=1.4e-29  Score=231.86  Aligned_cols=265  Identities=14%  Similarity=0.172  Sum_probs=202.6

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEE-E
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ-Q  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  121 (424)
                      +..+++|.|+.          ..++.|+     .+..|+++.+.-.                        ....+... .
T Consensus        13 ~v~~~~~~~~~----------~~l~~~~-----~dg~i~iw~~~~~------------------------~~~~~~~~~~   53 (351)
T 3f3f_A           13 LVHDVVYDFYG----------RHVATCS-----SDQHIKVFKLDKD------------------------TSNWELSDSW   53 (351)
T ss_dssp             CEEEEEECSSS----------SEEEEEE-----TTSEEEEEEECSS------------------------SCCEEEEEEE
T ss_pred             ceeEEEEcCCC----------CEEEEee-----CCCeEEEEECCCC------------------------CCcceeccee
Confidence            47789999965          3566555     4567888887311                        11223333 3


Q ss_pred             eccCCceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEE
Q 014433          122 INHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSG  197 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~  197 (424)
                      ..|.+.|++++|+|.  + .+|++|+.||.|++||+........ .........+.+|...|.+++|+|+  +. +|+++
T Consensus        54 ~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~  130 (351)
T 3f3f_A           54 RAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACL  130 (351)
T ss_dssp             ECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEE
T ss_pred             ccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCc-EEEEe
Confidence            469999999999994  5 4899999999999999987321110 0111446677889999999999998  66 79999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceee-------eecCCccEeeEEEecC--CCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQI-------FKVHEGVVEDVAWHLR--HEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                      +.||.|++||+++......+.....       ...|...+.+++|+|+  ...++++++.++.+.+|+...+. ...+..
T Consensus       131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~  209 (351)
T 3f3f_A          131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-LHVAAK  209 (351)
T ss_dssp             ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-EEEEEE
T ss_pred             cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-eeeeee
Confidence            9999999999988765444322111       1257789999999997  34577899999999888776654 233566


Q ss_pred             eeccCCCeeEEEecCCCC---eEEEEEeCCCcEEEEECCCCC--------------------------------------
Q 014433          269 VVAHQSEVNCLAFNPFNE---WILATGSTDKTVKLFDLRKIS--------------------------------------  307 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~---~~l~tg~~dg~i~iwd~~~~~--------------------------------------  307 (424)
                      +.+|...|++++|+|++.   .+|++|+.||.|++||++...                                      
T Consensus       210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence            778999999999999973   489999999999999998621                                      


Q ss_pred             -------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          308 -------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       308 -------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                             .++..+.+|...|++++|+|+++ +|++++.||.|+||++....
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             -CCSEEEEEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTS
T ss_pred             ecccccccEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCc
Confidence                   45667788999999999999996 79999999999999998753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.9e-30  Score=257.63  Aligned_cols=216  Identities=24%  Similarity=0.339  Sum_probs=183.8

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      ...+.+|...|++|+|+|++..+|++|+.||+|++|++........ .....+.+|...|.+++|+|++. ++++|+.||
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~-~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg  452 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG-VAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDG  452 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC-EEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc-cccceecCCCCcEEEEEECCCCC-EEEEEeCCC
Confidence            3468899999999999998777899999999999999976543211 23456788999999999999986 567999999


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE---ecCCCCCEEEEEEcC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT---FDSHKEEVFQVGWNP  327 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~~h~~~v~~~~~sp  327 (424)
                      .|+|||++++..   +..+.+|...|.+++|+|++. +|++|+.|++|++||++. ......   ..+|...|.+++|+|
T Consensus       453 ~v~vwd~~~~~~---~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          453 ELRLWDLAAGVS---TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             EEEEEETTTTEE---EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECS
T ss_pred             cEEEEECCCCcc---eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeC
Confidence            999999998653   677889999999999999998 599999999999999875 222211   246889999999999


Q ss_pred             CCC-cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          328 KNE-TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       328 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ++. .+|++++.|+.|+|||++..              .+...+.+|...|++++|+|+++ +|++++.||.|++||+.+
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~--------------~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNC--------------KLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT
T ss_pred             CCCcceEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC
Confidence            863 47999999999999999864              55677889999999999999999 799999999999999987


Q ss_pred             cc
Q 014433          407 NI  408 (424)
Q Consensus       407 ~~  408 (424)
                      +.
T Consensus       593 ~~  594 (694)
T 3dm0_A          593 GK  594 (694)
T ss_dssp             TE
T ss_pred             Cc
Confidence            64

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-30  Score=243.74  Aligned_cols=245  Identities=9%  Similarity=0.065  Sum_probs=186.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC---------------------CCCCCCCcEEEecCCCce
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP---------------------LDGACSPDLRLRGHSTEG  181 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~h~~~v  181 (424)
                      .....|.+++|+|||+ ++|+++.|++|+  |.........                     ..........+ .|...|
T Consensus        13 ~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V   88 (588)
T 2j04_A           13 EFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYP   88 (588)
T ss_dssp             CCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCE
T ss_pred             HhhccEEEEEECCCCC-EEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcE
Confidence            3457899999999997 899999999997  5332110000                     00011111111 457789


Q ss_pred             eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc-----cEeeEEEecCCCcEEEEEeCCCeEEEEE
Q 014433          182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG-----VVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~s~~~dg~i~i~d  256 (424)
                      .+++|+|+|. +||+++.||.|++||.+.        .+..+. |..     .+.+++|+|+++ ++|+|+.||+|+|||
T Consensus        89 ~~vawSPdG~-~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           89 RVCKPSPIDD-WMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQFFS  157 (588)
T ss_dssp             EEEEECSSSS-CEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEeCCc--------eeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEEEE
Confidence            9999999998 799999999999999542        344445 554     599999999997 557999999999999


Q ss_pred             cCCCCCCCC----eeee----eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--cceEe-cCCCCCEEEEEE
Q 014433          257 LRTPSVSKP----VQSV----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--ALHTF-DSHKEEVFQVGW  325 (424)
Q Consensus       257 ~~~~~~~~~----~~~~----~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~-~~h~~~v~~~~~  325 (424)
                      +..+....+    +..+    .+|...|.+++|+|++   +++++.|++|++||+.....  ..+++ .+|...|.+++|
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            998653222    3554    5677899999999987   67888899999999987331  23456 478899999999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe--CCCCCcEEEEEeCCCcEEEEe
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW--NPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +  + ..||+++ ++.|++||+...              .......+|...|++++|  +|++. .++++++||+ ++|.
T Consensus       235 s--g-~~LASa~-~~tIkLWd~~~~--------------~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~  294 (588)
T 2j04_A          235 V--D-YKVVLTC-PGYVHKIDLKNY--------------SISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLL  294 (588)
T ss_dssp             E--T-TEEEEEC-SSEEEEEETTTT--------------EEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEE
T ss_pred             E--C-CEEEEEe-CCeEEEEECCCC--------------eEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEe
Confidence            9  4 4788887 699999999874              332333389999999999  99998 7999999999 9999


Q ss_pred             cC
Q 014433          404 MA  405 (424)
Q Consensus       404 ~~  405 (424)
                      +.
T Consensus       295 ~d  296 (588)
T 2j04_A          295 ED  296 (588)
T ss_dssp             SS
T ss_pred             ec
Confidence            86

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.1e-29  Score=231.22  Aligned_cols=238  Identities=10%  Similarity=0.159  Sum_probs=179.5

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ...|.+.|++++|+|++. +||+|+.+| ++||++..          ......  .+...+..+++.+.+..++++++.|
T Consensus        15 ~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHP----------VAHIMS--QEMRHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----CCCCCEEEECTTSS-EEEEECSSE-EEEEEETT----------EEEEEE--EECSCCCEEEECTTSSEEEEECSST
T ss_pred             cccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCC----------cceeee--eecCCeEEEEEcCCCCEEEEEECCc
Confidence            356999999999999997 888888665 78999876          222222  2223477888888777445778889


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC-CCCCCeeeeeccCCCeeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-SVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~v~~v  279 (424)
                      +.|++||+.++.      .+..+. +...|.+++++++.  ++ ++ .++.|++||+++. +.   +..+..   +...+
T Consensus        81 ~~v~iWd~~~~~------~~~~~~-~~~~v~~v~~~~~~--~~-~~-~~~~i~i~d~~~~~~~---~~~~~~---~~~~~  143 (355)
T 3vu4_A           81 EVVHIWDDVKKQ------DVSRIK-VDAPVKDLFLSREF--IV-VS-YGDVISVFKFGNPWKR---ITDDIR---FGGVC  143 (355)
T ss_dssp             TEEEEEETTTTE------EEEEEE-CSSCEEEEEECSSE--EE-EE-ETTEEEEEESSTTCCB---SSCCEE---EEEEE
T ss_pred             cEEEEEECCCCc------EEEEEE-CCCceEEEEEcCCE--EE-EE-EcCEEEEEECCCCcee---eEEecc---CCceE
Confidence            999999998763      334444 66799999998753  33 33 4789999999987 43   222222   34455


Q ss_pred             EecCCCCeEEEE--EeCCCcEEEEECCCCC--------------Cc-ceEecCCCCCEEEEEEcCCCCcEEEEEECCCe-
Q 014433          280 AFNPFNEWILAT--GSTDKTVKLFDLRKIS--------------TA-LHTFDSHKEEVFQVGWNPKNETILASCCLGRR-  341 (424)
Q Consensus       280 ~~~~~~~~~l~t--g~~dg~i~iwd~~~~~--------------~~-~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~-  341 (424)
                      ++++  . ++++  |+.||.|++||+++..              .+ +..+.+|...|++++|+|++. +|++|+.|++ 
T Consensus       144 ~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~  219 (355)
T 3vu4_A          144 EFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTI  219 (355)
T ss_dssp             EEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSE
T ss_pred             EEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCE
Confidence            6666  4 3544  6889999999999733              12 788999999999999999995 8999999998 


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEc-C-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHG-G-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |+|||++++              .++..+. + |...|++++|+|+++ +|++++.|+.|+||++..+.
T Consensus       220 v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          220 IRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCS
T ss_pred             EEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCC
Confidence            999999875              4556666 5 999999999999999 69999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.4e-28  Score=234.08  Aligned_cols=237  Identities=19%  Similarity=0.291  Sum_probs=201.8

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ...|...|.+++|++   ..+++|+.||.|++||+..          ......+.+|...|.+++|  ++. +|++|+.|
T Consensus       195 ~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~----------~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d  258 (445)
T 2ovr_B          195 LYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET----------GQCLHVLMGHVAAVRCVQY--DGR-RVVSGAYD  258 (445)
T ss_dssp             ECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS----------CCEEEEEECCSSCEEEEEE--CSS-CEEEEETT
T ss_pred             ECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC----------CcEEEEEcCCcccEEEEEE--CCC-EEEEEcCC
Confidence            346999999999964   3799999999999999987          4567788899999999999  354 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |.|++||++++      ..+..+.+|...|.+++|  ++. .+++++.||.|++||+++++.   +..+..|...+.++.
T Consensus       259 g~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~  326 (445)
T 2ovr_B          259 FMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNC---IHTLTGHQSLTSGME  326 (445)
T ss_dssp             SCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCE---EEEECCCCSCEEEEE
T ss_pred             CEEEEEECCCC------cEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCE---EEEEcCCcccEEEEE
Confidence            99999999765      356667789999999999  444 567999999999999998664   777888999999999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      ++  +. +|++|+.||.|++||+++ ++++..+..   |...|.+++|++   .+|++++.||.|++||+.++       
T Consensus       327 ~~--~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~-------  392 (445)
T 2ovr_B          327 LK--DN-ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTG-------  392 (445)
T ss_dssp             EE--TT-EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC-------
T ss_pred             Ee--CC-EEEEEeCCCeEEEEECCC-CcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCC-------
Confidence            86  44 699999999999999998 677888876   888999999964   47999999999999999875       


Q ss_pred             CcCCCCCeeeEEE-----cCCCCCcceEEeCCCCCcEEEEEeCCCc----EEEEecCCc
Q 014433          358 DAEDGPPELLFIH-----GGHTSKISDFSWNPCEDWVISSVAEDNI----LQIWQMAEN  407 (424)
Q Consensus       358 ~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~dg~----i~vw~~~~~  407 (424)
                             +.+..+     .+|...|++++|+|++. ++++++.||.    |.|||+...
T Consensus       393 -------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          393 -------EFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             -------CEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred             -------ceeeeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECCCC
Confidence                   334444     46788899999999998 7999999998    999999764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.7e-30  Score=235.71  Aligned_cols=205  Identities=13%  Similarity=0.114  Sum_probs=161.5

Q ss_pred             cCCceeEEEecCCCCcE-EEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFL-IATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~-latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +...+.+++|+|+|+.+ +|+++.|++|+|||+.+          ......+. |...|.+|+|+|++. +|++++.+ .
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~----------~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~-~  198 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD----------LTEKFEIE-TRGEVKDLHFSTDGK-VVAYITGS-S  198 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT----------TEEEEEEE-CSSCCCEEEECTTSS-EEEEECSS-C
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC----------CcEEEEeC-CCCceEEEEEccCCc-eEEeccce-e
Confidence            44568899999999854 34556789999999987          34455554 788999999999998 78888755 5


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC----eEEEEEcCCCCCC-CCeeeeeccCCCee
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVS-KPVQSVVAHQSEVN  277 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg----~i~i~d~~~~~~~-~~~~~~~~~~~~v~  277 (424)
                      +++|+..++..    ........|...|.+++|+|++.. +++++.|+    .+++||+...... .....+..|...|+
T Consensus       199 ~~~~~~~~~~~----~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          199 LEVISTVTGSC----IARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             EEEEETTTCCE----EEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             EEEEEeccCcc----eeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            66666655432    112334568889999999999875 45777666    6888998765421 11345567899999


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      +++|+|++. +||+|+.|++|+|||+++ ++++..+ .+|..+|++++|+|+++ +||+|+.|++|+||++..
T Consensus       274 ~~~~Spdg~-~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          274 SMDVDMKGE-LAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred             eEEECCCCC-ceEEEcCCCEEEEEECCC-CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence            999999998 799999999999999998 6777764 78999999999999996 899999999999999964

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4.2e-28  Score=219.78  Aligned_cols=243  Identities=23%  Similarity=0.386  Sum_probs=193.9

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      +++|+|++++  +||+|. |++|+|||+.+        +.......+.+|...|++++|+|++. +|++|+.||+|++||
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~t--------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~   95 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASS--------GDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWD   95 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTT--------CCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCC--------CCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEee
Confidence            5789999865  788865 89999999987        22222334457888999999999988 799999999999999


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                      ++++      +.+..+.+|...+.++.+.+   .++++++.++.+++|+......  .+..+.+|...+.++++++.+. 
T Consensus        96 ~~~~------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-  163 (318)
T 4ggc_A           96 VQQQ------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQEVCGLRWAPDGR-  163 (318)
T ss_dssp             TTTT------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--EEEEEECCSSCEEEEEECTTSS-
T ss_pred             cCCc------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce--eEEEEcCccCceEEEEEcCCCC-
Confidence            9876      35667788998888877653   3678999999999999987653  4667788999999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCCC---CcceEecCCCCCEEEEEEcCCCCcEEE--EEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          288 ILATGSTDKTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNETILA--SCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +|++++.||.|++||+++..   ........|...|.+++++|.+..++.  +++.++.|++||.....           
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-----------  232 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----------  232 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-----------
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-----------
Confidence            69999999999999998732   234556678899999999998877654  45678999999988742           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEE-EeCCCcEEEEecCCccC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISS-VAEDNILQIWQMAENIY  409 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg~i~vw~~~~~~~  409 (424)
                          ......+...+..+.|+|++..++++ ++.|+.|+|||+.++..
T Consensus       233 ----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~  276 (318)
T 4ggc_A          233 ----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  276 (318)
T ss_dssp             ----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             ----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence                22233456679999999999965443 34799999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.1e-28  Score=226.04  Aligned_cols=251  Identities=12%  Similarity=0.077  Sum_probs=197.5

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ...+.+...+.+++|+|++..++++++.++.|++||+.+          .+....+..+. .+.+++|+|++..++++++
T Consensus        25 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~   93 (391)
T 1l0q_A           25 TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT----------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNM   93 (391)
T ss_dssp             EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT----------TEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred             EEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC----------CeEEEEEECCC-CccceEECCCCCEEEEEEC
Confidence            345556667999999999986778888999999999976          34445555444 8999999999985446666


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      .++.|++||+.+++      .+..+. +...+.+++|+|+++.++++++.++.|++||+++++.   +..+.. ...+.+
T Consensus        94 ~~~~v~v~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~~~  162 (391)
T 1l0q_A           94 ASSTLSVIDTTSNT------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTVSV-GRSPKG  162 (391)
T ss_dssp             TTTEEEEEETTTTE------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEEC-CSSEEE
T ss_pred             CCCEEEEEECCCCe------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEec-CCCcce
Confidence            78999999998763      233344 4457899999999988878899999999999988653   444444 456799


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE---CCCeEEEeeCCCCCcccC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC---LGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~---~dg~i~iwd~~~~~~~~~  355 (424)
                      ++|+|+++.++++++.++.|++||+++ .+.+..+. +...+.+++|+|++.. |++++   .++.|++||+..+     
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~-l~~~~~~~~~~~v~~~d~~~~-----  234 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTK-AYVTNVDKYFNTVSMIDTGTN-----  234 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSE-EEEEEECSSCCEEEEEETTTT-----
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCE-EEEEecCcCCCcEEEEECCCC-----
Confidence            999999997668888999999999997 55555555 4668999999999975 55555   7899999999864     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                               ..+..+..|. .+.+++|+|++++++++++.|+.|++||+.++.+
T Consensus       235 ---------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          235 ---------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             ---------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ---------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence                     4455555554 4789999999997668889999999999987643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.6e-27  Score=218.35  Aligned_cols=251  Identities=12%  Similarity=0.149  Sum_probs=181.7

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .+..+++.+.+..++++|+.++.|+|||..+          ......+. |...|.+++|+++   .++++ .|+.|++|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~----------~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~  124 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK----------KQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVF  124 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTT----------TEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCC----------CcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEE
Confidence            5788889888776667788899999999987          34455555 6779999999874   34444 47899999


Q ss_pred             eCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEE-EeCCCeEEEEEcCCCCC------------CCC-eeeeec
Q 014433          207 DINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSV------------SKP-VQSVVA  271 (424)
Q Consensus       207 d~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s-~~~dg~i~i~d~~~~~~------------~~~-~~~~~~  271 (424)
                      |+.+. +....      +..   +...+++++  ..++++ |+.||.|++||++++..            ..+ +..+.+
T Consensus       125 d~~~~~~~~~~------~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~  193 (355)
T 3vu4_A          125 KFGNPWKRITD------DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA  193 (355)
T ss_dssp             ESSTTCCBSSC------CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECC
T ss_pred             ECCCCceeeEE------ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc
Confidence            99876 32222      222   344556666  334333 68999999999987541            112 677889


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCc-EEEEECCCCCCcceEec-C-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKT-VKLFDLRKISTALHTFD-S-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      |...|++++|+|++. +||+|+.||+ |++||+++ ++++..+. + |...|.+++|+|++. +|++++.|+.|+|||++
T Consensus       194 h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          194 HTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESS
T ss_pred             cCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEcc
Confidence            999999999999988 7999999998 99999998 67888887 5 999999999999996 79999999999999998


Q ss_pred             CCCcccCCCC---------cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          349 RIDEEQTPED---------AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       349 ~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ..........         ..............+......++|++++. .|++++.||.+++|++..+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEEE
T ss_pred             CCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEcC
Confidence            6532211000         00000011111112223347799999999 6888999999999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=249.41  Aligned_cols=253  Identities=16%  Similarity=0.222  Sum_probs=198.9

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEE-EEEE
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQ-IIQQ  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  121 (424)
                      +..++.|.|+.          ..++.|+     .+..|+++.+.-                          +... +...
T Consensus        11 ~V~~l~~s~dg----------~~latg~-----~dg~I~vwd~~~--------------------------~~~~~~~~l   49 (753)
T 3jro_A           11 LIHDAVLDYYG----------KRLATCS-----SDKTIKIFEVEG--------------------------ETHKLIDTL   49 (753)
T ss_dssp             CEEEECCCSSS----------CCEEEEE-----TTTEEEEEEEET--------------------------TEEEEEEEE
T ss_pred             eeEEEEECCCC----------CeEEEEE-----CCCcEEEEecCC--------------------------CCCccceec
Confidence            47788888875          3455555     356788887741                          1122 2334


Q ss_pred             eccCCceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC--CCceEEEE
Q 014433          122 INHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF--KEGHLLSG  197 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~  197 (424)
                      .+|.+.|++++|+|+  + .+|++|+.||.|++||+..        +.......+.+|...|.+++|+|+  +. +|++|
T Consensus        50 ~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~--------~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sg  119 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEEN--------GRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVA  119 (753)
T ss_dssp             CCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEET--------TEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEE
T ss_pred             cCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCC--------CcccccccccCCCCCeEEEEECCCCCCC-EEEEE
Confidence            479999999999987  5 4899999999999999987        222356778889999999999998  66 89999


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC------------CCcEEEEEeCCCeEEEEEcCCCCCC-C
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR------------HEYLFGSVGDDQYLLIWDLRTPSVS-K  264 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~~~s~~~dg~i~i~d~~~~~~~-~  264 (424)
                      +.||.|++||++.....    ....+.+|...|.+++|+|.            +..++++|+.||.|++||++++... .
T Consensus       120 s~dg~I~vwdl~~~~~~----~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~  195 (753)
T 3jro_A          120 SSDGKVSVVEFKENGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV  195 (753)
T ss_dssp             ETTSEEEEEECCSSSCC----CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred             eCCCcEEEEEeecCCCc----ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence            99999999999876432    23345679999999999995            2345679999999999999986431 2


Q ss_pred             CeeeeeccCCCeeEEEecCCC--CeEEEEEeCCCcEEEEECCCCCC----cceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          265 PVQSVVAHQSEVNCLAFNPFN--EWILATGSTDKTVKLFDLRKIST----ALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~--~~~l~tg~~dg~i~iwd~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      ....+.+|...|++++|+|++  ..+|++|+.||.|++||++....    .+.....|...|++++|+|++. +|++++.
T Consensus       196 ~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~  274 (753)
T 3jro_A          196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGG  274 (753)
T ss_dssp             EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECS
T ss_pred             eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcC
Confidence            345667899999999999993  34799999999999999997421    3344456889999999999996 6899999


Q ss_pred             CCeEEEeeCCCCC
Q 014433          339 GRRLMVWDLSRID  351 (424)
Q Consensus       339 dg~i~iwd~~~~~  351 (424)
                      ||.|++|++....
T Consensus       275 Dg~I~vwd~~~~~  287 (753)
T 3jro_A          275 DNKVTLWKENLEG  287 (753)
T ss_dssp             SSCEECCBCCSSS
T ss_pred             CCEEEEEecCCCC
Confidence            9999999998543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-28  Score=222.67  Aligned_cols=215  Identities=16%  Similarity=0.262  Sum_probs=182.9

Q ss_pred             CCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEE
Q 014433          166 GACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS  245 (424)
Q Consensus       166 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  245 (424)
                      +.......+.+|...|++++|+|++. +|++|+.||.|++||+.++      ..+..+.+|...|.+++|+|++. +|++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~l~s   91 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNG------ERLGTLDGHTGTIWSIDVDCFTK-YCVT   91 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCc------hhhhhhhhcCCcEEEEEEcCCCC-EEEE
Confidence            34445567899999999999999887 8999999999999999876      34566778999999999999886 5679


Q ss_pred             EeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC----------Ccc
Q 014433          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS----------TAL  310 (424)
Q Consensus       246 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~----------~~~  310 (424)
                      ++.||.|++||+++++.   +..+. +...+.+++|+|++. +|++++.+     |.|++||++...          .++
T Consensus        92 ~~~dg~i~iwd~~~~~~---~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQC---VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             EETTTEEEEEETTTCCE---EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             EeCCCeEEEEECCCCcE---EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence            99999999999998664   55544 888999999999998 58888888     999999998633          245


Q ss_pred             eEecCCCC--CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014433          311 HTFDSHKE--EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW  388 (424)
Q Consensus       311 ~~~~~h~~--~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  388 (424)
                      ..+..|..  .+.+++|+|++. +|++++.||.|++||++..             ...+..+..|...|.+++|+|++. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~-  231 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLT-  231 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSS-
T ss_pred             eeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCC-
Confidence            55666666  999999999986 7999999999999999863             156777888999999999999999 


Q ss_pred             EEEEEeCCCcEEEEecCCcc
Q 014433          389 VISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       389 ~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +|++++.|+.|++||+.++.
T Consensus       232 ~l~~~~~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          232 YFITSSRDTNSFLVDVSTLQ  251 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCC
T ss_pred             EEEEecCCceEEEEECCCCc
Confidence            68899999999999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=7.1e-28  Score=213.53  Aligned_cols=257  Identities=11%  Similarity=0.094  Sum_probs=175.0

Q ss_pred             CCCcEEEEEEeccCC-----ceeEEEecCCC--CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-----
Q 014433          112 ANGKVQIIQQINHDG-----EVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-----  179 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~-----~v~~~~~~p~~--~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-----  179 (424)
                      ..+.++++.++..+.     .+.++.|-..+  ...+++++ ...|++|+....       .+++...++.+|..     
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-------~~~~~~~~~~~~~~~v~~~   92 (356)
T 2w18_A           21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-------WQWEKLYTWHFAEVPVLQI   92 (356)
T ss_dssp             ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-------SBEEEEEEEECCSSCEEEE
T ss_pred             CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCC-------ccceeeEEEeccCceeEEE
Confidence            356788888887654     34455554433  22566666 468999998872       12344555555554     


Q ss_pred             --------------------ceeEEEecCC----CCceEEEEeC--------------------CCcEEEEeCCCCCCCC
Q 014433          180 --------------------EGYGLSWSKF----KEGHLLSGSD--------------------DAQICLWDINAAPKNK  215 (424)
Q Consensus       180 --------------------~v~~l~~~~~----~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~  215 (424)
                                          .|.+|+++|+    +. .+++++.                    |+.|++|++....   
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG---  168 (356)
T 2w18_A           93 VPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG---  168 (356)
T ss_dssp             CCCTTCCSCEEEEECSSSEEEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS---
T ss_pred             EEcCcccceeeeeeccccccceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC---
Confidence                                4566666776    44 4555442                    7778888874321   


Q ss_pred             cccceeeeecCCccEeeEEEec---CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC---CCeeEEEecCCCCeE-
Q 014433          216 SLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ---SEVNCLAFNPFNEWI-  288 (424)
Q Consensus       216 ~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~-  288 (424)
                        +.+..+..|...++.++|++   ++ .+|++++.|++|+|||+++++.   +.++.+|.   ..+.+++|+|++..+ 
T Consensus       169 --~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~---l~tL~g~~~~v~~v~~vafSpdG~~lv  242 (356)
T 2w18_A          169 --GGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQL---LKKMHIDDSYQASVCHKAYSEMGLLFI  242 (356)
T ss_dssp             --CEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCE---EEEEECCC---CCCEEEEEEETTEEEE
T ss_pred             --ceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcE---EEEEcCCCcceeeeEEEEECCCCCEEE
Confidence              23445567888888888888   44 4778999999999999999774   66666543   467788999988743 


Q ss_pred             ----------EEEEeCCCcEEEEECCCCCCcceEe-----cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          289 ----------LATGSTDKTVKLFDLRKISTALHTF-----DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       289 ----------l~tg~~dg~i~iwd~~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                                +++|+.|++|++||..+ ++.+..+     .+|...+.+..++  + .++|+++.|++|+|||+.++   
T Consensus       243 s~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tG---  315 (356)
T 2w18_A          243 VLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLG---  315 (356)
T ss_dssp             EEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTC---
T ss_pred             EeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCC---
Confidence                      36788999999999987 5655544     3666666555555  4 47999999999999999886   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                                 +++.++.+|...+. .++|+|+++ +|++|+.|++|+|||+.
T Consensus       316 -----------k~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          316 -----------QCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             -----------SEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEEC
T ss_pred             -----------cEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecCC
Confidence                       66778888987666 589999999 69999999999999963

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=219.40  Aligned_cols=244  Identities=10%  Similarity=0.078  Sum_probs=174.8

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecC--CCCceEEEEeCCC
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSK--FKEGHLLSGSDDA  201 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg  201 (424)
                      ...|.++.|+|.    +++|+.|++|++|+.......... ......... .+|...|.+++|+|  ++. +|++|+.||
T Consensus        76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg  149 (343)
T 3lrv_A           76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS-KTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRG  149 (343)
T ss_dssp             EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET-TTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTC
T ss_pred             cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec-CCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCC
Confidence            457888899986    889999999999987641000000 001212233 36778999999999  887 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeee-ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCL  279 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v  279 (424)
                      .|++||++++..      .... ..|...+.+++|+|++. +|++|+.||.|++||++++..  ....+.. |..+|+++
T Consensus       150 ~i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          150 TIGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             CEEEEESSSSCE------EEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEE
T ss_pred             cEEEEECCCCcE------EEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEE
Confidence            999999987632      2222 23556899999999986 677999999999999998764  1155666 99999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEE--EEEEcCCCCcEEEEEEC-CCeEEEeeCCCCCcc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVF--QVGWNPKNETILASCCL-GRRLMVWDLSRIDEE  353 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~--~~~~sp~~~~~l~s~~~-dg~i~iwd~~~~~~~  353 (424)
                      +|+|++. +|++++ ++.|++||+++ ...+..+..   |...+.  +++|+|+++ +|++++. |+.|+||++..... 
T Consensus       221 ~fs~~g~-~l~s~~-~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~-  295 (343)
T 3lrv_A          221 KFADNGY-WMVVEC-DQTVVCFDLRK-DVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTK-  295 (343)
T ss_dssp             EECTTSS-EEEEEE-SSBEEEEETTS-STTCBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTC-
T ss_pred             EEeCCCC-EEEEEe-CCeEEEEEcCC-CCcceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEccccc-
Confidence            9999988 688888 55999999998 444444433   444444  699999996 7888888 99999999975421 


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCC---CCCcEEEEEeCCCcEEEEecCC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNP---CEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                                   ....    ..+..++|.+   +.. .+++++.|+.+.++-...
T Consensus       296 -------------~~~~----~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          296 -------------NWTK----DEESALCLQSDTADFT-DMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             -------------SEEE----EEEEECCC----CCCC-EEEEEEETTEEEEEEECS
T ss_pred             -------------ceEe----cCceeEecCccccccc-eeEEEecCCceEEEEecC
Confidence                         1111    3466777887   667 577778888888875544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=6.2e-27  Score=221.73  Aligned_cols=244  Identities=11%  Similarity=0.113  Sum_probs=191.8

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|.+.|.+++|+|++. ++++++.++.|++||+..          ......+..|...+.+++|+|++..++++++.|+.
T Consensus       167 ~~~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  235 (433)
T 3bws_A          167 KKLGFVETISIPEHNE-LWVSQMQANAVHVFDLKT----------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISED  235 (433)
T ss_dssp             TTCCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTT----------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCceeEEEEcCCCE-EEEEECCCCEEEEEECCC----------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc
Confidence            5788999999999775 899999999999999976          45566777899999999999998854466668999


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-------CCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-------DDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      |++||++++.      .+..+.. ...+.+++|+|++..+++++.       .||.|++||+++++.   +. ...+...
T Consensus       236 i~~~d~~~~~------~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~-~~~~~~~  304 (433)
T 3bws_A          236 ISVIDRKTKL------EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL---ID-TIGPPGN  304 (433)
T ss_dssp             EEEEETTTTE------EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---EE-EEEEEEC
T ss_pred             EEEEECCCCc------EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE---Ee-eccCCCC
Confidence            9999997652      2333333 456999999999986654432       588999999987653   32 2345668


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC---------------CC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---------------GR  340 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~---------------dg  340 (424)
                      +.+++|+|+++.++++++.++.|++||+++ ++.+..+. +...+.+++|+|+++ +|++++.               ||
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccce
Confidence            899999999988888889999999999997 56666665 678899999999997 4556555               57


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .|++||+.++              +.+..+.. ...+.+++|+|++++++++++.|+.|++|++..
T Consensus       382 ~v~~~d~~~~--------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          382 KVYVIDTTTD--------------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEETTTT--------------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEEECCCC--------------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999874              44445554 346899999999995444444699999999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.6e-27  Score=222.62  Aligned_cols=255  Identities=9%  Similarity=0.053  Sum_probs=201.3

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcE-----EEecCCCceeEEEecC
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-----RLRGHSTEGYGLSWSK  188 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~~~  188 (424)
                      +.++....+.+...+.+++|+| +..++++++.++.|++||+.+          .....     .+.+|...|.+++|++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~----------g~~~~~~~~~~~~~~~~~v~~~~~~~  179 (433)
T 3bws_A          111 ITHRFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINS----------GQTVRLSPPEKYKKKLGFVETISIPE  179 (433)
T ss_dssp             CSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTT----------CCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred             CcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCC----------CeEeeecCcccccccCCceeEEEEcC
Confidence            4667777777778888999999 556888888899999999886          22222     3457889999999999


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                      ++. ++++++.|+.|++||++++.      .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.   +..
T Consensus       180 ~~~-~~~s~~~d~~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~---~~~  249 (433)
T 3bws_A          180 HNE-LWVSQMQANAVHVFDLKTLA------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE---IRK  249 (433)
T ss_dssp             GTE-EEEEEGGGTEEEEEETTTCC------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE---EEE
T ss_pred             CCE-EEEEECCCCEEEEEECCCce------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE---EEE
Confidence            776 89999999999999997653      34556678889999999999988877877899999999987653   444


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEe--------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGS--------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~--------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      +.. ...+.+++|+|++.. +++++        .||.|++||+++ ++.+..+ .|...+.+++|+|+++.++++++.|+
T Consensus       250 ~~~-~~~~~~~~~~~~g~~-l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          250 TDK-IGLPRGLLLSKDGKE-LYIAQFSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             CCC-CSEEEEEEECTTSSE-EEEEEEESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             ecC-CCCceEEEEcCCCCE-EEEEECCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCC
Confidence            433 456999999999985 55655        588999999997 4555444 45668999999999987788889999


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC---------------CCcEEEEecC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE---------------DNILQIWQMA  405 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------------dg~i~vw~~~  405 (424)
                      .|++||+..+              ..+..+. +...+.+++|+|++++ +++++.               ||.|++||+.
T Consensus       326 ~v~v~d~~~~--------------~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          326 KIEVYDLKEK--------------KVQKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             EEEEEETTTT--------------EEEEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred             EEEEEECCCC--------------cEEEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECC
Confidence            9999999864              3344443 5667899999999995 555554               5799999998


Q ss_pred             CccC
Q 014433          406 ENIY  409 (424)
Q Consensus       406 ~~~~  409 (424)
                      ++..
T Consensus       390 ~~~~  393 (433)
T 3bws_A          390 TDTV  393 (433)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            7643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-27  Score=224.24  Aligned_cols=244  Identities=14%  Similarity=0.092  Sum_probs=179.9

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-----ceeEEEecCCCCceEEE
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-----EGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~l~s  196 (424)
                      +.|...|.+++|+|+|. .||+++.||.|+||+...            ....+. |..     .+.+++|||+|. +|++
T Consensus        82 ~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~------------~l~~l~-~~~~~~~~sv~svafSPDG~-~LAs  146 (588)
T 2j04_A           82 SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK------------MLTNLD-SKGNLSSRTYHCFEWNPIES-SIVV  146 (588)
T ss_dssp             TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE------------EEEECC-CSSCSTTTCEEEEEECSSSS-CEEE
T ss_pred             cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc------------eeeecc-CCCccccccEEEEEEcCCCC-EEEE
Confidence            36688999999999997 799999999999999543            233344 554     599999999998 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCC-cccceeee----ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-e
Q 014433          197 GSDDAQICLWDINAAPKNK-SLEAMQIF----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-V  270 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~  270 (424)
                      |+.||+|++||+.++.... .+-.+..+    .+|...|.+++|+|++   +++++.|++|++||+..+........+ .
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            9999999999998763211 10123444    5678899999999998   568889999999999887642234455 4


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE--cCCCCcEEEEEECCCeEEEeeCC
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW--NPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      +|...|.+++|+  +. .||+++ +++|++||+.. +.......+|...|..++|  +|++ ..|++++.||+ ++|...
T Consensus       224 ~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~-~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          224 ASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKN-YSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTT-TEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred             cccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCC-CeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence            788999999999  55 688887 69999999997 4442333379999999999  9998 47999999999 999985


Q ss_pred             CCCcccCCCCc-----C------CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          349 RIDEEQTPEDA-----E------DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       349 ~~~~~~~~~~~-----~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      ....  .....     +      +.....+..+.+ ...|++++|+|+|+ ++|+++
T Consensus       297 ~~~~--spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~-~lA~~~  349 (588)
T 2j04_A          297 ELHV--TADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGY-SIAIVY  349 (588)
T ss_dssp             SEEE--ECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSS-EEEEEE
T ss_pred             cEEE--CCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCC-EEEEEE
Confidence            3210  00000     0      000011112222 44589999999999 688776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=9e-28  Score=224.57  Aligned_cols=280  Identities=15%  Similarity=0.140  Sum_probs=177.7

Q ss_pred             ccCCceeEEEec---CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecC-----------
Q 014433          123 NHDGEVNRARYM---PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK-----------  188 (424)
Q Consensus       123 ~h~~~v~~~~~~---p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----------  188 (424)
                      .-+....+++|+   |+...++++|. ++.|.+|+............... ......+...+..+.|++           
T Consensus        13 pl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (393)
T 4gq1_A           13 PLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQ-ELFTIQTGLPTLHLSFSSSCSYSENLHDG   90 (393)
T ss_dssp             CTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEE-EEEEEECSSCEEEEEECTTCEEECC----
T ss_pred             cCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCccccccccee-eeEEEecCCCeeeEeecCCccccccccCC
Confidence            334455666674   45556777665 77899998754221110000000 011122344444444442           


Q ss_pred             --------CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC-------CCcEEEEEeCCCeEE
Q 014433          189 --------FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-------HEYLFGSVGDDQYLL  253 (424)
Q Consensus       189 --------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~s~~~dg~i~  253 (424)
                              ....+|++|+.|++|++||++.+... ....+..+.+|.+.|++++|+|.       ..++||+++.|++|+
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETII-TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEE-EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccc-eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence                    22337999999999999999876321 11234457789999999999982       235889999999999


Q ss_pred             EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc-----------------------
Q 014433          254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL-----------------------  310 (424)
Q Consensus       254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~-----------------------  310 (424)
                      |||++++..   +..+..|..++.+++|+|++..+|++|+.||+|++||+++.....                       
T Consensus       170 ~Wd~~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          170 IWRLTDEGP---ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEETTEE---EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             EEECCCCce---eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            999987653   666778899999999999987789999999999999998732211                       


Q ss_pred             -eEecCCCCCEEEEEEc-CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC-----CCCeeeEEEcCCCCCcceEEeC
Q 014433          311 -HTFDSHKEEVFQVGWN-PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED-----GPPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       311 -~~~~~h~~~v~~~~~s-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~  383 (424)
                       ....+|...|.++.|+ |++. .|++++.|+.+++||+..............     ...........+...+..+.+.
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence             1123577889999997 6775 799999999999999987654332211100     0001122233333333333344


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          384 PCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +.+..++++|+.||.|++||+.++..
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~  351 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDS  351 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcE
Confidence            44554678888999999999987754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.9e-26  Score=213.02  Aligned_cols=254  Identities=19%  Similarity=0.186  Sum_probs=187.5

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI  122 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (424)
                      +..+++|.|+...       ...++.|+     .+..|+++.+.-.                         +........
T Consensus        41 ~v~~~~~~~~~~~-------g~~l~~~~-----~dg~i~iw~~~~~-------------------------~~~~~~~~~   83 (368)
T 3mmy_A           41 SIGCLSFSPPTLP-------GNFLIAGS-----WANDVRCWEVQDS-------------------------GQTIPKAQQ   83 (368)
T ss_dssp             CEEEEEECCTTSS-------SEEEEEEE-----TTSEEEEEEECTT-------------------------SCEEEEEEE
T ss_pred             ceEEEEEcCCCCC-------ceEEEEEC-----CCCcEEEEEcCCC-------------------------CceeEEEec
Confidence            4678888887411       15566665     4467888877311                         122223455


Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe--cCCCCceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--SKFKEGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~d  200 (424)
                      .|.+.|++++|+|++. +|++|+.||.|++||+..          .. ...+.+|...|.+++|  +|++. +|++++.|
T Consensus        84 ~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~----------~~-~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d  150 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSS----------NQ-AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWD  150 (368)
T ss_dssp             ECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT----------TE-EEEEEECSSCEEEEEEEECSSCE-EEEEEETT
T ss_pred             cccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCC----------CC-ceeeccccCceEEEEEEeCCCCC-EEEEccCC
Confidence            7999999999999886 899999999999999987          22 3456779999999999  78776 79999999


Q ss_pred             CcEEEEeCCCCCCCCcccce-----------------------------------eeeecCCccEeeEEEecCCC---cE
Q 014433          201 AQICLWDINAAPKNKSLEAM-----------------------------------QIFKVHEGVVEDVAWHLRHE---YL  242 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~---~~  242 (424)
                      |.|++||++++.....+...                                   .....+...+.++++.+...   ..
T Consensus       151 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (368)
T 3mmy_A          151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG  230 (368)
T ss_dssp             SEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred             CcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe
Confidence            99999999877543222100                                   00001123344555544432   23


Q ss_pred             EEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC------------CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc
Q 014433          243 FGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS------------EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL  310 (424)
Q Consensus       243 ~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  310 (424)
                      +++++.||.|++||++.......+..+..|..            .|++++|+|++. +|++|+.||.|++||+++ +.++
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~-~~~~  308 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDA-RTKL  308 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTT-TEEE
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCC-CcEE
Confidence            67999999999999988642234555666655            799999999998 589999999999999998 7888


Q ss_pred             eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          311 HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       311 ~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ..+..|...|.+++|+|++. +|++++.|+..+.|++..
T Consensus       309 ~~~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          309 KTSEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EECCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGGGCC
T ss_pred             EEecCCCCCceEEEECCCCC-eEEEEecccccccccccC
Confidence            99999999999999999996 688999888666665543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.6e-26  Score=213.45  Aligned_cols=231  Identities=13%  Similarity=0.091  Sum_probs=182.7

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      .++++++.++.|++||+.+          .+....+..|. .+.+++|+|++..++++++.|+.|++||+.+++      
T Consensus         3 ~l~vs~~~d~~v~v~d~~~----------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~------   65 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS----------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN------   65 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT----------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE------
T ss_pred             EEEEEcCCCCEEEEEECCC----------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe------
Confidence            5789999999999999987          34455666554 589999999998545788899999999997763      


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      .+..+..+ ..+.+++|+|+++.++++++.++.|++||+.+++.   +..+. +...+.+++|+|+++.++++++.++.|
T Consensus        66 ~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~---~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           66 VIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV---AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeE---EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            33444433 48999999999998877887889999999998653   44444 445789999999999766889899999


Q ss_pred             EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      ++||+++ ++.+..+..+ ..+.+++|+|+++.++++++.++.|++||++..              ....... +...+.
T Consensus       141 ~~~d~~~-~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~--------------~~~~~~~-~~~~~~  203 (391)
T 1l0q_A          141 SVINTVT-KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--------------SVIDTVK-VEAAPS  203 (391)
T ss_dssp             EEEETTT-TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------EEEEEEE-CSSEEE
T ss_pred             EEEECCC-CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--------------eEEEEEe-cCCCcc
Confidence            9999997 6677777664 567999999999866678888999999999874              3333333 345689


Q ss_pred             eEEeCCCCCcEEEEEe--CCCcEEEEecCCcc
Q 014433          379 DFSWNPCEDWVISSVA--EDNILQIWQMAENI  408 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~  408 (424)
                      +++|+|+++++++++.  .++.|++||+.++.
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            9999999995444443  78999999998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=7.5e-27  Score=207.01  Aligned_cols=199  Identities=12%  Similarity=0.135  Sum_probs=144.7

Q ss_pred             cCCceeEEEecCC----CCcEEEEEe--------------------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC
Q 014433          124 HDGEVNRARYMPQ----NPFLIATKT--------------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST  179 (424)
Q Consensus       124 h~~~v~~~~~~p~----~~~~latg~--------------------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~  179 (424)
                      |.+.|++++|+|+    ++ .+++++                    .|+.|++|++..         ..+....+.+|..
T Consensus       110 ~~~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~---------dG~~~~s~~~~~~  179 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE---------DGGGKENQFLMPP  179 (356)
T ss_dssp             SEEEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT---------TSCEEEEEEECCC
T ss_pred             cccceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC---------CCceeeeeccCCC
Confidence            3457777777776    54 444433                    388888888854         1344567778999


Q ss_pred             ceeEEEecC---CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC---ccEeeEEEecCCCcE-----------
Q 014433          180 EGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE---GVVEDVAWHLRHEYL-----------  242 (424)
Q Consensus       180 ~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~-----------  242 (424)
                      .+..++|++   ++. +|++|+.|++|+|||+++++      .+..+.+|.   ..+.+++|+|++..+           
T Consensus       180 ~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          180 EETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             SSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             ceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            999999998   455 79999999999999998874      345555543   357777999998654           


Q ss_pred             EEEEeCCCeEEEEEcCCCCCCCCeeee-----eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC
Q 014433          243 FGSVGDDQYLLIWDLRTPSVSKPVQSV-----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK  317 (424)
Q Consensus       243 ~~s~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~  317 (424)
                      +++|+.|++|++||..+++.   +..+     .+|...+.+..++  +. ++|+|+.|++|+|||+++ ++.+.++.+|.
T Consensus       253 laSGs~D~tIklWd~~tgk~---l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~  325 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLS---VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL-GQCTALLPPVS  325 (356)
T ss_dssp             -----CCEEEEEEETTTTEE---EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT-CSEEEEECCC-
T ss_pred             eeccCCCcEEEEEECCCCEE---EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC-CcEEEEecCCC
Confidence            36788999999999988653   3222     2455555544544  54 799999999999999998 78999999988


Q ss_pred             CCEE-EEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          318 EEVF-QVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       318 ~~v~-~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      ..+. +++|+|+++ +|++|+.|++|+|||+
T Consensus       326 ~~vvs~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          326 DQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence            7665 589999996 7999999999999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=1.3e-24  Score=199.54  Aligned_cols=297  Identities=8%  Similarity=0.061  Sum_probs=206.9

Q ss_pred             eEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEE
Q 014433           63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA  142 (424)
Q Consensus        63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~la  142 (424)
                      .+++++|+++.+ ....++++.++..                        .+++..+....+...+..++|+|+++ +++
T Consensus         2 ~~~~~vg~y~~~-~~~~i~v~~~d~~------------------------tg~~~~~~~~~~~~~p~~~a~spdg~-l~~   55 (347)
T 3hfq_A            2 QERILFGTYTKK-TSQGIYQGTLDTT------------------------AKTLTNDGLLAATQNPTYLALSAKDC-LYS   55 (347)
T ss_dssp             EEEEEEEECCSS-SCCEEEEEEEETT------------------------TTEEEEEEEEEECSCCCCEEECTTCE-EEE
T ss_pred             CcEEEEEeccCC-CCCCEEEEEEcCC------------------------CCeEEEeeeeeccCCcceEEEccCCe-EEE
Confidence            478899998865 3557888888522                        34566666677788899999999987 666


Q ss_pred             EEeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-CCCcEEEEeCCCCCCCCcccc
Q 014433          143 TKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       143 tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      ++..  ++.|++|++..        +.......+..+...+..++|+|++. +|++++ .++.|.+|++.....   ...
T Consensus        56 ~~~~~~~~~v~~~~~~~--------g~~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~---~~~  123 (347)
T 3hfq_A           56 VDKEDDEGGIAAWQIDG--------QTAHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGA---LTL  123 (347)
T ss_dssp             EEEETTEEEEEEEEEET--------TEEEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSC---EEE
T ss_pred             EEecCCCceEEEEEecC--------CcEEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCC---eee
Confidence            6543  68999999965        22333444556778889999999998 566666 789999999964322   122


Q ss_pred             eeeeec---------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-cCCCeeEEEecCCCCeEE
Q 014433          220 MQIFKV---------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWIL  289 (424)
Q Consensus       220 ~~~~~~---------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l  289 (424)
                      +..+..         +...+.+++|+|+++ ++++...++.|.+||+........+..+.. ....+..++|+|+|++++
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEE
Confidence            222211         123488999999998 887888899999999983222112222222 234678899999999777


Q ss_pred             EEEeCCCcEEEEECCCC-CC--cceEecCCC------CCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcC
Q 014433          290 ATGSTDKTVKLFDLRKI-ST--ALHTFDSHK------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE  360 (424)
Q Consensus       290 ~tg~~dg~i~iwd~~~~-~~--~~~~~~~h~------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  360 (424)
                      +++..++.|.+|++... +.  .+..+....      ..+..++|+|+++.+++++..++.|.+|++....         
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g---------  273 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG---------  273 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG---------
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC---------
Confidence            77778899999998741 22  122332222      4588999999998666777789999999987421         


Q ss_pred             CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec--CCccC
Q 014433          361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM--AENIY  409 (424)
Q Consensus       361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~--~~~~~  409 (424)
                        ....+.....+...+..++|+|++++++++...++.|.+|++  .++.+
T Consensus       274 --~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          274 --HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             --CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             --cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence              114455555666678999999999965555556699999955  44543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=7.1e-24  Score=193.90  Aligned_cols=268  Identities=9%  Similarity=0.134  Sum_probs=181.1

Q ss_pred             cEEEEEEeccCCceeEEEecCCCCcEEEEEeCC-CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVS-AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      .++....+.|...+.+++|+|+++. |++++.+ +.|.+|++....      +.......+..+. .+.+++|+|++..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~s~dg~~l   98 (343)
T 1ri6_A           27 ALTLTQVVDVPGQVQPMVVSPDKRY-LYVGVRPEFRVLAYRIAPDD------GALTFAAESALPG-SLTHISTDHQGQFV   98 (343)
T ss_dssp             CEEEEEEEECSSCCCCEEECTTSSE-EEEEETTTTEEEEEEECTTT------CCEEEEEEEECSS-CCSEEEECTTSSEE
T ss_pred             cEEEeeeEecCCCCceEEECCCCCE-EEEeecCCCeEEEEEecCCC------CceeeccccccCC-CCcEEEEcCCCCEE
Confidence            4555667788999999999999974 5555554 999999997310      1222333444444 78999999999843


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee--eeec
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVA  271 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~~~  271 (424)
                      ++++..++.|.+||+..+   ........+. ....+.+++|+|++..+++++..++.|.+||+.+......+.  ....
T Consensus        99 ~~~~~~~~~i~~~d~~~~---~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  174 (343)
T 1ri6_A           99 FVGSYNAGNVSVTRLEDG---LPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  174 (343)
T ss_dssp             EEEETTTTEEEEEEEETT---EEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             EEEecCCCeEEEEECCCC---cccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence            344455899999999522   1112233333 334689999999998777655589999999998722211111  2222


Q ss_pred             -cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-CCc--ceEec---CC---CCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          272 -HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-STA--LHTFD---SH---KEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       272 -~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~--~~~~~---~h---~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                       ....+.+++|+|+++++++++..++.|.+||+... +..  ...+.   ..   ...+..++|+|+++.+++++..++.
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence             34578899999999976677778999999999642 221  22222   11   2357789999999866667778999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      |.+|++.....          ....+.....+.. +..++|+|+++++++++..++.|.+|++.
T Consensus       255 i~v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          255 ITVFSVSEDGS----------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEECTTSC----------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEEEcCCCC----------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            99999973110          1133444444444 89999999999655555478999999554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-23  Score=197.10  Aligned_cols=245  Identities=11%  Similarity=0.040  Sum_probs=182.3

Q ss_pred             EEeccCCceeEEEecCC--------------CCcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC
Q 014433          120 QQINHDGEVNRARYMPQ--------------NPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHST  179 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~--------------~~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~  179 (424)
                      ....|...+..+++.+.              +. .++.++.+      +.|++||+..           .....+.+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g-----------~~~~~l~~~~~  179 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDG-----------YNQFVVHRSPQ  179 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTS-----------CSCEEEEEESS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCC-----------CCCEEEeCCCC
Confidence            34568888888877751              44 34444443      7999999875           33567888999


Q ss_pred             ceeEEEecCCCCceEEEEeCCC---cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEE
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDA---QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLI  254 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i  254 (424)
                      .+.+++|+|++. .|++++.++   .|++||+.+++.       ..+..|...+.+++|+|+++.++++++.++.  |++
T Consensus       180 ~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~-------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          180 PLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  251 (415)
T ss_dssp             CEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE-------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence            999999999998 688888775   999999987632       2345677899999999999877767776655  999


Q ss_pred             EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-CC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      ||++++.    ...+..|...+.+++|+|+++. |++++. ++  .|.+||+.. +. ...+..+...+.+++|+|+++.
T Consensus       252 ~d~~~~~----~~~l~~~~~~~~~~~~spdg~~-l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          252 MDLASGQ----IRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             EETTTCC----EEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEEEEEEECTTSSE
T ss_pred             EECCCCC----EEeCcCCCCcccceEECCCCCE-EEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcccCeEECCCCCE
Confidence            9998755    3556678889999999999985 555554 55  677778876 33 4556667788999999999974


Q ss_pred             EEEEEECC---CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC---cEEEEecC
Q 014433          332 ILASCCLG---RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN---ILQIWQMA  405 (424)
Q Consensus       332 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~vw~~~  405 (424)
                       |++++.+   ..|.+||+..+.               ...+..|. .+..++|+|+++. |++++.++   .|++|++.
T Consensus       325 -l~~~~~~~g~~~i~~~d~~~~~---------------~~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          325 -MVMVSSNGGQQHIAKQDLATGG---------------VQVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             -EEEEEECSSCEEEEEEETTTCC---------------EEECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETT
T ss_pred             -EEEEECcCCceEEEEEECCCCC---------------EEEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECC
Confidence             5555543   589999998743               12334444 7899999999995 55555555   79999998


Q ss_pred             CccC
Q 014433          406 ENIY  409 (424)
Q Consensus       406 ~~~~  409 (424)
                      .+..
T Consensus       387 g~~~  390 (415)
T 2hqs_A          387 GRFK  390 (415)
T ss_dssp             SCCE
T ss_pred             CCcE
Confidence            6644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1e-22  Score=185.54  Aligned_cols=253  Identities=6%  Similarity=0.027  Sum_probs=182.3

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCceeEEEecCCCCceEEEEeCCC-
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-  201 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-  201 (424)
                      +...+ .++|+|+++.+++++..++.|++||..+          ... ...+..+..+..+++|+|++. +|+++..++ 
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~  106 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL----------EPPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNH  106 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS----------SSCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSS
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC----------CceeEEecccCCCCccceEECCCCC-EEEEecCCCC
Confidence            34556 9999999986677766689999999987          233 455666666665599999988 577555553 


Q ss_pred             --cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe-EEEEEcCCCCCCCCe-eeeeccCCCee
Q 014433          202 --QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPV-QSVVAHQSEVN  277 (424)
Q Consensus       202 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-i~i~d~~~~~~~~~~-~~~~~~~~~v~  277 (424)
                        .|.+||+.++.      .+..+. ......+++|+|+++.++++...++. |.+|++......... .........+.
T Consensus       107 ~~~i~v~d~~~~~------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          107 PFNMQSYSFLKNK------FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             SCEEEEEETTTTE------EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred             cccEEEEECCCCC------eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence              89999997663      233333 34456899999999888878788788 999999864421111 12223445689


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTA---LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      .++|+|+++++++++..++.|.+||+.+ ++.   +..+.. ...+..++|+|+++.++++...++.|.+||+.++..  
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~--  255 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQN-PENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL--  255 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE--
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCC-CcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce--
Confidence            9999999997777777899999999987 555   666654 467789999999976566666688899999987532  


Q ss_pred             CCCCcCCCCCeeeEEEcCC----CC---CcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          355 TPEDAEDGPPELLFIHGGH----TS---KISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h----~~---~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                ..+..+..+    ..   ....++|+|+++++++++..++.|.+|++....+
T Consensus       256 ----------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          256 ----------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             ----------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ----------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence                      112221111    11   2355899999997667777788999999988754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=7.9e-22  Score=182.06  Aligned_cols=299  Identities=13%  Similarity=0.131  Sum_probs=197.0

Q ss_pred             eEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEE
Q 014433           63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA  142 (424)
Q Consensus        63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~la  142 (424)
                      ...+++|+++.+ ..+.|+++.+...                        .++++.+... +...+..++|+|+++ +|+
T Consensus        13 ~~~~~vg~y~~~-~~~~i~~~~~d~~------------------------~g~~~~~~~~-~~~~p~~l~~spdg~-~l~   65 (361)
T 3scy_A           13 ELTMLVGTYTSG-NSKGIYTFRFNEE------------------------TGESLPLSDA-EVANPSYLIPSADGK-FVY   65 (361)
T ss_dssp             EEEEEEEECCSS-SCCEEEEEEEETT------------------------TCCEEEEEEE-ECSCCCSEEECTTSS-EEE
T ss_pred             ceEEEEEeccCC-CCCCEEEEEEeCC------------------------CCCEEEeecc-cCCCCceEEECCCCC-EEE
Confidence            578899999875 4567888888522                        3455556666 888899999999997 556


Q ss_pred             EEeCC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-CCCcEEEEeCCCCCCCCcc
Q 014433          143 TKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSL  217 (424)
Q Consensus       143 tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  217 (424)
                      +++.+    +.|.+|++....      +....+.....+......+++  ++. +|++++ .++.|.+|++........+
T Consensus        66 ~~~~~~~~~~~v~~~~~~~~~------g~~~~~~~~~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~~~~  136 (361)
T 3scy_A           66 SVNEFSKDQAAVSAFAFDKEK------GTLHLLNTQKTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGALLPA  136 (361)
T ss_dssp             EEECCSSTTCEEEEEEEETTT------TEEEEEEEEECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred             EEEccCCCCCcEEEEEEeCCC------CcEEEeeEeccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcCccc
Confidence            66654    899999987510      112223344445666778888  566 455544 6899999999764332222


Q ss_pred             cceeeee--------cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC------CCC----eeeeeccCCCeeEE
Q 014433          218 EAMQIFK--------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV------SKP----VQSVVAHQSEVNCL  279 (424)
Q Consensus       218 ~~~~~~~--------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~------~~~----~~~~~~~~~~v~~v  279 (424)
                      .......        .+...+.+++|+|+++.++++...++.|.+|++.....      ...    ......+...+..+
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  216 (361)
T 3scy_A          137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL  216 (361)
T ss_dssp             SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred             ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence            1111111        12234688999999988887777789999999886442      110    11122345568899


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEe---cCCCCCEEEEEEcCCCCcEEEEEEC-CCeEEEeeCCCCCcc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTF---DSHKEEVFQVGWNPKNETILASCCL-GRRLMVWDLSRIDEE  353 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~---~~h~~~v~~~~~sp~~~~~l~s~~~-dg~i~iwd~~~~~~~  353 (424)
                      +|+|+++++++++..++.|.+||+.+ +..  +..+   ..+......++|+|+++.++++... ++.|.+|++....  
T Consensus       217 ~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~--  293 (361)
T 3scy_A          217 IFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN--  293 (361)
T ss_dssp             EECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT--
T ss_pred             EEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC--
Confidence            99999986555555789999999985 332  2222   2334567899999999754455555 6899999986311  


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC--CccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA--ENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~--~~~~  409 (424)
                              +....+..... ...+.+++|+|++++++++...++.|.+|++.  ++.+
T Consensus       294 --------g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          294 --------GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             --------CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             --------CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence                    01123333433 45688999999999655555578999996554  5544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=8.8e-23  Score=182.25  Aligned_cols=243  Identities=11%  Similarity=0.090  Sum_probs=175.5

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC-CCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEE
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK-HPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ....|.+.|.+++|+|++. +|++++ ++.|++||+.. .          ........+ ...+.+++|+|++. +|+++
T Consensus        36 ~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~spdg~-~l~~~  102 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDP----------SPEKVDTGFATICNNDHGISPDGA-LYAIS  102 (297)
T ss_dssp             EEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCC----------SCEECCCTTCCCBCSCCEECTTSS-EEEEE
T ss_pred             eeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCC----------CceEeccccccccccceEECCCCC-EEEEE
Confidence            4556899999999999997 677665 78999999875 2          112223344 36789999999988 68887


Q ss_pred             e--CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          198 S--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       198 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +  .++...||.++....     ....+.. ...+..++|+|+++.++++++.++.++||+++....  ....+..+...
T Consensus       103 ~~~~~~~~~l~~~~~~~~-----~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~  174 (297)
T 2ojh_A          103 DKVEFGKSAIYLLPSTGG-----TPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGEGR  174 (297)
T ss_dssp             ECTTTSSCEEEEEETTCC-----CCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSSSC
T ss_pred             EeCCCCcceEEEEECCCC-----ceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCCCc
Confidence            7  334555555532211     1122222 334889999999988877888999999999754321  24556667888


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----------CeEEE
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-----------RRLMV  344 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----------g~i~i  344 (424)
                      +.+++|+|+++.+++++..++.+++|++......+..+..|...+.+++|+|+++ +|++++.+           +.|.+
T Consensus       175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCceEEEE
Confidence            9999999999865555556899999998744567778888888999999999997 45555544           56999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      ||+.....            ..+....+|...+..++|+|+++++++++..+
T Consensus       254 ~d~~~~~~------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          254 MDMDGGNV------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EETTSCSC------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EecCCCCc------------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99976432            34555557888899999999999644444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=9.6e-24  Score=199.21  Aligned_cols=216  Identities=13%  Similarity=0.119  Sum_probs=156.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCC------CCCCcEEEecCCCceeEEEecCCCCceEE----
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDG------ACSPDLRLRGHSTEGYGLSWSKFKEGHLL----  195 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~----  195 (424)
                      ..++.+++++++. ++++++.++ ++||+............      ...+.. ...+...|.+++|+|++. +|+    
T Consensus        37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~-~lav~~~  112 (434)
T 2oit_A           37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGL-LVPMKFPIHHLALSCDNL-TLSACMM  112 (434)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCE-EECCSSCEEEEEECTTSC-EEEEEEE
T ss_pred             CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccc-cccCCCcccEEEEcCCCC-EEEEEEe
Confidence            4578999999876 788888887 89988643111000000      011111 224677899999999988 677    


Q ss_pred             EEeCCCcEEEEeCCCC-----CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          196 SGSDDAQICLWDINAA-----PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      +|+.|+.|++||+.+.     .....+.....+.+|...|.+++|+|++..+|++++.||+|++||++++..   +....
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---~~~~~  189 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---VCATL  189 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---EEEEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---eeecc
Confidence            7889999999998754     111222234556779999999999998667889999999999999998642   44556


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-------CCCEEEEEEcCCCCcEEEEEECCCe--
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-------KEEVFQVGWNPKNETILASCCLGRR--  341 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-------~~~v~~~~~sp~~~~~l~s~~~dg~--  341 (424)
                      .|...|++++|+|++. +|++|+.||.|++||++.  .....+..|       ...|.+++|++++..+++.++.||.  
T Consensus       190 ~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CGGGCEEEEEECTTSS-CEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            6888999999999988 599999999999999982  334444333       3389999999988544444555543  


Q ss_pred             ----EEEeeCCCCC
Q 014433          342 ----LMVWDLSRID  351 (424)
Q Consensus       342 ----i~iwd~~~~~  351 (424)
                          +++|+++...
T Consensus       267 ~~~~v~i~~l~~~~  280 (434)
T 2oit_A          267 TSPDVVMALLPKKE  280 (434)
T ss_dssp             SCCEEEEEECCCTT
T ss_pred             CCCceEEEEeccCC
Confidence                8999998653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=4.8e-22  Score=186.86  Aligned_cols=225  Identities=8%  Similarity=0.054  Sum_probs=169.4

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCC---eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSA---EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ...|.+.|.+++|+|+++ .||+++.++   .|++||+.+          .. ...+..|...+.+++|+|++..+++++
T Consensus       174 l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~t----------g~-~~~l~~~~~~~~~~~~spdg~~la~~~  241 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLAN----------GA-VRQVASFPRHNGAPAFSPDGSKLAFAL  241 (415)
T ss_dssp             EEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTT----------CC-EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCC----------Cc-EEEeecCCCcccCEEEcCCCCEEEEEE
Confidence            346889999999999997 677777775   999999987          22 345777888999999999998544477


Q ss_pred             eCCCc--EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEEcCCCCCCCCeeeeeccC
Q 014433          198 SDDAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       198 ~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      +.++.  |++||+.++.       ...+..|...+.+++|+|+++.+++++..++  .|.+||+.++.    ...+..+.
T Consensus       242 ~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~~  310 (415)
T 2hqs_A          242 SKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEG  310 (415)
T ss_dssp             CTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSS
T ss_pred             ecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----EEEEecCC
Confidence            76665  9999997652       2345567888999999999986664444455  67777888755    23444567


Q ss_pred             CCeeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC---eEEEeeCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---RLMVWDLS  348 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~  348 (424)
                      ..+.+++|+|+++++++++..+  ..|++||+.+ ++. ..+..+. .+.+++|+|+++ +|++++.++   .|.+||+.
T Consensus       311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETT
T ss_pred             CcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECC
Confidence            7899999999999644444442  5899999987 343 4555554 899999999997 566666555   79999987


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      .               .....+.+|.+.|.+++|+|...
T Consensus       387 g---------------~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          387 G---------------RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             S---------------CCEEECCCSSSEEEEEEECCCCC
T ss_pred             C---------------CcEEEeeCCCCCCcCCccccccc
Confidence            4               34566788889999999999754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=4.3e-22  Score=193.03  Aligned_cols=252  Identities=11%  Similarity=0.081  Sum_probs=190.8

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeC--CCCCCCCCCCCCCCCcEEEecCCCceeEEEecC----CCCceEEEEe-CC
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDY--SKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK----FKEGHLLSGS-DD  200 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~d  200 (424)
                      +..++|+|+++ +|++++.++.|++||+  .+          ......+. +...+..++|+|    +++ +|++++ .+
T Consensus       181 ~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t----------~~~~~~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~  247 (543)
T 1nir_A          181 VHISRMSASGR-YLLVIGRDARIDMIDLWAKE----------PTKVAEIK-IGIEARSVESSKFKGYEDR-YTIAGAYWP  247 (543)
T ss_dssp             EEEEEECTTSC-EEEEEETTSEEEEEETTSSS----------CEEEEEEE-CCSEEEEEEECCSTTCTTT-EEEEEEEES
T ss_pred             cceEEECCCCC-EEEEECCCCeEEEEECcCCC----------CcEEEEEe-cCCCcceEEeCCCcCCCCC-EEEEEEccC
Confidence            89999999997 6778888999999999  44          34455565 556789999999    998 577766 58


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeec----------CC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKV----------HE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      ++|.+||..+.+.      +..+..          |. ..+..+.++|+++.++++...++.|.+||+.+.+... +..+
T Consensus       248 ~~v~v~D~~t~~~------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i  320 (543)
T 1nir_A          248 PQFAIMDGETLEP------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSI  320 (543)
T ss_dssp             SEEEEEETTTCCE------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEE
T ss_pred             CeEEEEecccccc------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-eEEe
Confidence            9999999876643      222221          22 3789999999999899999999999999998865421 2233


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC----CCCCEEEEEEcCCCCcEEEEEE-CCCeEEE
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS----HKEEVFQVGWNPKNETILASCC-LGRRLMV  344 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~l~s~~-~dg~i~i  344 (424)
                       .+...+..++|+|+++++++++..+++|.+||+.+ ++++..+..    |.+....+ ++|++..+++++. .|++|.+
T Consensus       321 -~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v  397 (543)
T 1nir_A          321 -GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL  397 (543)
T ss_dssp             -ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred             -ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence             35667889999999998777777789999999998 677777664    55444443 5787556788876 5899999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-------CCCcEEEEecCCccCC
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-------EDNILQIWQMAENIYH  410 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~dg~i~vw~~~~~~~~  410 (424)
                      ||+......       ....+++..+.+|...+..++++|++++ |++++       .+++|.|||+.+....
T Consensus       398 ~d~~~~~~~-------~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          398 IGTDPKNHP-------QYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EECCTTTCT-------TTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EEeCCCCCc-------hhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCCC
Confidence            999863211       0113678888899888999999999994 66655       2779999999987543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.2e-21  Score=189.94  Aligned_cols=264  Identities=13%  Similarity=0.155  Sum_probs=196.1

Q ss_pred             EEEEEEeccCCceeEEEecC----CCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCCCcEEEec----------CCC-
Q 014433          116 VQIIQQINHDGEVNRARYMP----QNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRG----------HST-  179 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p----~~~~~latg~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----------h~~-  179 (424)
                      .+++..+.+...+..++|+|    +++. +++++ .+++|.|||..+          .+++..+..          |.. 
T Consensus       212 ~~~~~~i~~g~~p~~va~sp~~~~dg~~-l~v~~~~~~~v~v~D~~t----------~~~~~~i~~~g~~~~~~~~~~~~  280 (543)
T 1nir_A          212 PTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGET----------LEPKQIVSTRGMTVDTQTYHPEP  280 (543)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTT----------CCEEEEEECCEECSSSCCEESCC
T ss_pred             CcEEEEEecCCCcceEEeCCCcCCCCCE-EEEEEccCCeEEEEeccc----------cccceeecccCcccCccccccCC
Confidence            44566777888899999999    9984 55555 589999999876          344455543          223 


Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .+.++.++|++..++++...++.|.+||+.+.....    +..+ .+...+.++.|+|+++++++++..+++|.+||+.+
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~----~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT----VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE----EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce----eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            688999999888778888899999999998753321    1122 35667889999999998887777899999999998


Q ss_pred             CCCCCCeeeeec----cCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCC------CCcceEecCCCCCEEEEEEcCC
Q 014433          260 PSVSKPVQSVVA----HQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKI------STALHTFDSHKEEVFQVGWNPK  328 (424)
Q Consensus       260 ~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~sp~  328 (424)
                      ++.   +..+..    |......+ ++|++..+++++. .|++|.+||+.+.      .+.++++..|...+..++++|+
T Consensus       356 g~l---~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd  431 (543)
T 1nir_A          356 RRL---SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  431 (543)
T ss_dssp             TEE---EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             CeE---EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence            764   444432    54444443 4787566788876 5899999999862      4678899999889999999999


Q ss_pred             CCcEEEEEE-------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE-----EcCCCCCcceEEeCCCCCcEEEEEe--
Q 014433          329 NETILASCC-------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI-----HGGHTSKISDFSWNPCEDWVISSVA--  394 (424)
Q Consensus       329 ~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~l~s~~--  394 (424)
                      ++ .|++++       .+++|.+||+.+.....          +.+-.     +..+...+..+.|+|+|+.++++..  
T Consensus       432 g~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          432 SS-HLYVDTTFNPDARISQSVAVFDLKNLDAKY----------QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             CC-EEEECCTTCSSHHHHTCEEEEETTCTTSCC----------EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             CC-cEEEecCCCCCcccCceEEEEECCCCCCCe----------EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence            97 576765       26799999999865321          11100     1345667999999999997666643  


Q ss_pred             --CCCcEEEEecCCccCC
Q 014433          395 --EDNILQIWQMAENIYH  410 (424)
Q Consensus       395 --~dg~i~vw~~~~~~~~  410 (424)
                        .++.|.|||..++.+.
T Consensus       501 ~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          501 KNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             TTSCCEEEEEETTTTEEE
T ss_pred             CCCCCeEEEEECCCceEE
Confidence              4799999999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2.4e-21  Score=177.95  Aligned_cols=250  Identities=9%  Similarity=0.074  Sum_probs=183.3

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeC------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTV------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ......+..++|+|+++.++++...      ++.|.+||..+          ......+. ....+.+++|+|++..+++
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----------~~~~~~~~-~~~~~~~~~~s~dg~~l~v  105 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----------LEVTQAIH-NDLKPFGATINNTTQTLWF  105 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----------CCEEEEEE-ESSCCCSEEEETTTTEEEE
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----------CeEEEEEe-cCCCcceEEECCCCCEEEE
Confidence            4455678899999998755554433      67899999887          33344444 3445789999999985566


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCc---------cEeeEEEecCCCcEEEEE-eCCCeEEEEEcCCCCCCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG---------VVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVSKP  265 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~s~-~~dg~i~i~d~~~~~~~~~  265 (424)
                      ++..++.|.+||+.+++.      +..+..+..         .+.+++|+|+++.++++. +.++.|.+||+.+++.   
T Consensus       106 ~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~---  176 (353)
T 3vgz_A          106 GNTVNSAVTAIDAKTGEV------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL---  176 (353)
T ss_dssp             EETTTTEEEEEETTTCCE------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE---
T ss_pred             EecCCCEEEEEeCCCCee------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce---
Confidence            667789999999987643      222332221         278899999998777666 3588999999988653   


Q ss_pred             eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC----CCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS----HKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       266 ~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                      +..+..+...+.+++|+|+++. +++++.++.|.+||+.+ ++.+..+..    +...+.+++|+|+++.++++...++.
T Consensus       177 ~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  254 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE  254 (353)
T ss_dssp             EEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred             EEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence            4444445666889999999985 77777899999999987 566655553    45578899999999866666666799


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      |.+||+.++.              .+.......  ...++|+|++++++++...++.|.+||+.++..
T Consensus       255 v~~~d~~~~~--------------~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          255 VLVVDTRNGN--------------ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEETTTCC--------------EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEECCCCc--------------EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            9999997753              233333222  367999999997777776899999999987643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=2.2e-21  Score=176.75  Aligned_cols=246  Identities=9%  Similarity=0.073  Sum_probs=176.2

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      ..|.+++..++++++.++.|++||..+          .+....+..+...+ +++|+|++..+++++..++.|.+||+.+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~   71 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDT----------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL   71 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTT----------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcc----------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            346666777899999999999999987          34445555556667 9999999984444455589999999987


Q ss_pred             CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-C--eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-Q--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                      +..     ....+..+..+..+++|+|+++.++ ++..+ +  .|.+||+.+++.   +..+. ......+++|+|++++
T Consensus        72 ~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~---~~~~~-~~~~~~~~~~spdg~~  141 (331)
T 3u4y_A           72 EPP-----KVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKF---ISTIP-IPYDAVGIAISPNGNG  141 (331)
T ss_dssp             SSC-----EEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEE---EEEEE-CCTTEEEEEECTTSSC
T ss_pred             Cce-----eEEecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCe---EEEEE-CCCCccceEECCCCCE
Confidence            632     1334445555555599999998766 54444 3  899999988653   44443 3456799999999987


Q ss_pred             EEEEEeCCCc-EEEEECCCCCCcc---eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          288 ILATGSTDKT-VKLFDLRKISTAL---HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       288 ~l~tg~~dg~-i~iwd~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      +++++..++. |.+|++...+...   .........+..++|+|+++.+++++..++.|.+||+..+..           
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-----------  210 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-----------  210 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-----------
T ss_pred             EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-----------
Confidence            7777777788 9999998633321   112234566899999999976667777799999999986532           


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ...+..+..+ ..+..++|+|++++++++...++.|.+||+.++.+
T Consensus       211 ~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          211 ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             CEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             cceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            0113344433 56789999999997666666788999999988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.7e-22  Score=190.76  Aligned_cols=210  Identities=14%  Similarity=0.157  Sum_probs=153.0

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-------Cccc--ceeeeecCCccEeeEEEecCCCcEEE---EE
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-------KSLE--AMQIFKVHEGVVEDVAWHLRHEYLFG---SV  246 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~---s~  246 (424)
                      ..+..+++++.+. ++++++.++ +++|+.......       ....  .......+...|.+++|+|++..+++   ++
T Consensus        37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            3577899999776 788888887 888875421110       0000  00011235678999999999976554   77


Q ss_pred             eCCCeEEEEEcCCC-----CCCCC---eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC
Q 014433          247 GDDQYLLIWDLRTP-----SVSKP---VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE  318 (424)
Q Consensus       247 ~~dg~i~i~d~~~~-----~~~~~---~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~  318 (424)
                      +.|+.|+|||+++.     ...++   +..+.+|...|++++|+|++..+|++++.||+|++||+++ +..+.....|..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPSTV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCCC
Confidence            88999999999764     11112   3445668999999999998555899999999999999998 455556667889


Q ss_pred             CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-------CCCCCcceEEeCCCCCcEEE
Q 014433          319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-------GHTSKISDFSWNPCEDWVIS  391 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~  391 (424)
                      .|.+++|+|++. +|++|+.||.|++||++ +..              ...+.       .|...|.+++|++++.++++
T Consensus       194 ~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~--------------~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          194 AVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQE--------------KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             CEEEEEECTTSS-CEEEEETTSCEEEECTT-CCE--------------EEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Ccc--------------cccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            999999999986 69999999999999998 221              11111       23347899999998885555


Q ss_pred             EEeCCCc------EEEEecCCc
Q 014433          392 SVAEDNI------LQIWQMAEN  407 (424)
Q Consensus       392 s~~~dg~------i~vw~~~~~  407 (424)
                      .++.+|.      +++|++...
T Consensus       258 ~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          258 YAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTCCSSSCCEEEEEECCCT
T ss_pred             EccCCCccCCCCceEEEEeccC
Confidence            5556543      899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=3.5e-21  Score=171.85  Aligned_cols=228  Identities=10%  Similarity=0.011  Sum_probs=164.8

Q ss_pred             EEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC-CCCCCccccee
Q 014433          143 TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA-APKNKSLEAMQ  221 (424)
Q Consensus       143 tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~  221 (424)
                      .++.++.|++||+..           .....+..|...+.+++|+|++. +|++++ ++.|.+||+.+ +..      ..
T Consensus        17 ~~~~~~~i~~~d~~~-----------~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~------~~   77 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRT-----------RKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSP------EK   77 (297)
T ss_dssp             -CCCCEEEEEEETTT-----------TEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSC------EE
T ss_pred             CCCcceeEEEEeCCC-----------CceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCc------eE
Confidence            346789999999976           22345667899999999999998 677776 78999999987 532      22


Q ss_pred             eeecC-CccEeeEEEecCCCcEEEEEe--CCCeEEEEEc--CCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC
Q 014433          222 IFKVH-EGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK  296 (424)
Q Consensus       222 ~~~~~-~~~v~~~~~~~~~~~~~~s~~--~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg  296 (424)
                      ....+ ...+.+++|+|++..++ +++  .++...||.+  ..+.    ...+.. ...+.+++|+|+++.++++++.++
T Consensus        78 ~~~~~~~~~~~~~~~spdg~~l~-~~~~~~~~~~~l~~~~~~~~~----~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           78 VDTGFATICNNDHGISPDGALYA-ISDKVEFGKSAIYLLPSTGGT----PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             CCCTTCCCBCSCCEECTTSSEEE-EEECTTTSSCEEEEEETTCCC----CEECCS-SSSEEEEEECTTSSEEEEEEEETT
T ss_pred             eccccccccccceEECCCCCEEE-EEEeCCCCcceEEEEECCCCc----eEEeec-CCCccceEECCCCCEEEEEECCCC
Confidence            23334 46789999999998654 665  3345555554  4433    233333 335899999999997666888899


Q ss_pred             cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433          297 TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK  376 (424)
Q Consensus       297 ~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  376 (424)
                      .++||+++........+..+...+.+++|+|+++.+++++..++.++||++....             ..+..+..|...
T Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~  218 (297)
T 2ojh_A          152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------SSVERITDSAYG  218 (297)
T ss_dssp             EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------SCEEECCCCSEE
T ss_pred             ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------CCcEEEecCCcc
Confidence            9999997543455667777888999999999997555555568999999986321             224445566777


Q ss_pred             cceEEeCCCCCcEEEEEeCC-----------CcEEEEecCCccC
Q 014433          377 ISDFSWNPCEDWVISSVAED-----------NILQIWQMAENIY  409 (424)
Q Consensus       377 v~~~~~~~~~~~~l~s~~~d-----------g~i~vw~~~~~~~  409 (424)
                      +..++|+|++++ |++++.+           +.|.+|++.++..
T Consensus       219 ~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          219 DWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            889999999995 5554444           5699999987643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.1e-21  Score=177.40  Aligned_cols=246  Identities=11%  Similarity=0.114  Sum_probs=166.8

Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC-CcEEEEeCCCCCCCC
Q 014433          137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-AQICLWDINAAPKNK  215 (424)
Q Consensus       137 ~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~  215 (424)
                      +..++++++.++.|++|++...       +..... ....|...+.+++|+|++. +|++++.+ +.|.+|++....  .
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~~--~   72 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHE-------GALTLT-QVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPDD--G   72 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTT-------SCEEEE-EEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTTT--C
T ss_pred             eEEEEEeCCCCCeEEEEEECCC-------CcEEEe-eeEecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCCC--C
Confidence            3446666688999999999641       111222 2345777899999999988 57777765 999999997221  1


Q ss_pred             cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433          216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       216 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                      ....+..+..+. .+..++|+|+++.+++++..++.|.+||+..+.....+..+. ....+.+++|+|+++++++++..+
T Consensus        73 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~  150 (343)
T 1ri6_A           73 ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQ  150 (343)
T ss_dssp             CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCC
Confidence            122333344333 789999999998787676679999999995322111233333 345689999999998655555489


Q ss_pred             CcEEEEECCCCCCcce----EecC-CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE
Q 014433          296 KTVKLFDLRKISTALH----TFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH  370 (424)
Q Consensus       296 g~i~iwd~~~~~~~~~----~~~~-h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      +.|.+||+...+....    .+.. ....+..++|+|+++.+++++..++.|.+|++.....          ........
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----------~~~~~~~~  220 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG----------NIECVQTL  220 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS----------CCEEEEEE
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC----------cEEEEeec
Confidence            9999999986333221    2222 3457889999999976666666899999999964211          01111111


Q ss_pred             c----CC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          371 G----GH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       371 ~----~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      .    ++  ...+..++|+|++++++++...++.|.+|++.
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            1    11  23466899999999777777789999999998

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1e-19  Score=166.96  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=173.6

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC---------ceeEEEecCC
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST---------EGYGLSWSKF  189 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~  189 (424)
                      ...+.....+..++|+|+++.+++++..++.|.+||..+          ......+..+..         .+.+++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  151 (353)
T 3vgz_A           82 TQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT----------GEVKGRLVLDDRKRTEEVRPLQPRELVADDA  151 (353)
T ss_dssp             EEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT----------CCEEEEEESCCCCCCSSCCCCEEEEEEEETT
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC----------CeeEEEEecCCCccccccCCCCCceEEECCC
Confidence            344555667889999999987777777789999999987          333444544332         2688999999


Q ss_pred             CCceEEEEe--CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          190 KEGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       190 ~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      +.. +++++  .++.|.+||+.+++      ....+..+...+.+++|+|+++.++ +++.++.|.+||+.+++.   +.
T Consensus       152 g~~-l~~~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~i~~~d~~~~~~---~~  220 (353)
T 3vgz_A          152 TNT-VYISGIGKESVIWVVDGGNIK------LKTAIQNTGKMSTGLALDSEGKRLY-TTNADGELITIDTADNKI---LS  220 (353)
T ss_dssp             TTE-EEEEEESSSCEEEEEETTTTE------EEEEECCCCTTCCCCEEETTTTEEE-EECTTSEEEEEETTTTEE---EE
T ss_pred             CCE-EEEEecCCCceEEEEcCCCCc------eEEEecCCCCccceEEECCCCCEEE-EEcCCCeEEEEECCCCeE---EE
Confidence            884 55544  58899999997653      2333443555688999999998665 667799999999988653   33


Q ss_pred             eeec----cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          268 SVVA----HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       268 ~~~~----~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      .+..    +...+..++|+|+++.++++...++.|.+||+.+ ++.+..+....  ...++|+|+++.++++...++.|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence            3332    4556888999999997666666679999999987 56666666433  267999999976666666799999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE  395 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  395 (424)
                      +||+.++              +.+..+... ..+.+++|+|++++++++...
T Consensus       298 ~~d~~~~--------------~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          298 VIDAKSY--------------KVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEETTTT--------------EEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCC--------------eEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            9999875              334444333 357899999999965555543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.7e-20  Score=188.25  Aligned_cols=242  Identities=7%  Similarity=-0.025  Sum_probs=171.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..|.+++|+|+++ .|++++. +.|++||+....        ......+..|...+.+++|+|+|+ +|+.++ ++.|++
T Consensus       109 ~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~--------~~~~~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~~  176 (741)
T 2ecf_A          109 TGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEG--------KAAVRQLTHGEGFATDAKLSPKGG-FVSFIR-GRNLWV  176 (741)
T ss_dssp             EESCCCEECTTSS-EEEEEET-TEEEEEESSSCS--------TTSCCBCCCSSSCEEEEEECTTSS-EEEEEE-TTEEEE
T ss_pred             cCcceeEECCCCC-EEEEEeC-CcEEEEECCCCC--------cceEEEcccCCcccccccCCCCCC-EEEEEe-CCcEEE
Confidence            4588999999997 5666665 999999998710        002334566778899999999998 677776 469999


Q ss_pred             EeCCCCCCCCcccceeeeecCCc----------------cEeeEEEecCCCcEEEEEeCCC-------------------
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEG----------------VVEDVAWHLRHEYLFGSVGDDQ-------------------  250 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~~s~~~dg-------------------  250 (424)
                      ||+.++..      ......+..                .+..++|+|+++.++ +++.|+                   
T Consensus       177 ~d~~~g~~------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d~~~~~~~~~~~~~p~~~~~~  249 (741)
T 2ecf_A          177 IDLASGRQ------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARIDESPVPVQKRYEVYADRTDVI  249 (741)
T ss_dssp             EETTTTEE------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEECTTSCEEEEEEECSSCEEEE
T ss_pred             EecCCCCE------EEeccCCccceeccccceeeeeccccccceEECCCCCEEE-EEEEcCCCCceEecCCCCCCcccce
Confidence            99986522      111111222                247899999998765 555444                   


Q ss_pred             --------------eEEEEEcCC-CCCCCCeeee--eccCCCeeEEEecCCCCeEEEEEe----CCCcEEEEECCCCCCc
Q 014433          251 --------------YLLIWDLRT-PSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGS----TDKTVKLFDLRKISTA  309 (424)
Q Consensus       251 --------------~i~i~d~~~-~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~----~dg~i~iwd~~~~~~~  309 (424)
                                    .|.+||+.+ ++.   ....  ..|...+.+++| |+|+.+++++.    .+..|++||+.+ +..
T Consensus       250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~  324 (741)
T 2ecf_A          250 EQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQ  324 (741)
T ss_dssp             EEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCE
T ss_pred             EeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-Cce
Confidence                          788999987 653   2221  146778999999 99996444433    256899999987 555


Q ss_pred             ceEecCCCC----CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE-EeCC
Q 014433          310 LHTFDSHKE----EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF-SWNP  384 (424)
Q Consensus       310 ~~~~~~h~~----~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~  384 (424)
                      ...+..+..    .+..++|+|+++ ++++++.||.++||.+....             . ...+..|...|..+ .|+|
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~-------------~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          325 RVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG-------------K-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-------------C-EEESCCSSSCEEEEEEEET
T ss_pred             EEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-------------C-eeeeeecceEEEeEeEEeC
Confidence            555544433    456899999997 88899999988888775321             2 44556667778787 5999


Q ss_pred             CCCcEEEEEeCCC--cEEEEecCC
Q 014433          385 CEDWVISSVAEDN--ILQIWQMAE  406 (424)
Q Consensus       385 ~~~~~l~s~~~dg--~i~vw~~~~  406 (424)
                      +++.++++++.++  .++||++..
T Consensus       390 dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          390 KAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCCEEEEEEeCCCCceEEEEEEEc
Confidence            9996667777676  899999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=2e-19  Score=166.16  Aligned_cols=294  Identities=12%  Similarity=0.145  Sum_probs=182.8

Q ss_pred             eEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe--ccCCceeEEEecCCCCcE
Q 014433           63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI--NHDGEVNRARYMPQNPFL  140 (424)
Q Consensus        63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~  140 (424)
                      .+++++|+++.+   ..|++..++.                        ..+++..+...  .....+..++|+|+++ +
T Consensus         2 ~~~~~vg~~~~~---~~i~~~~~d~------------------------~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~   53 (365)
T 1jof_A            2 LHHLMIGTWTPP---GAIFTVQFDD------------------------EKLTCKLIKRTEIPQDEPISWMTFDHERK-N   53 (365)
T ss_dssp             EEEEEEEESSSS---CEEEEEEEET------------------------TTTEEEEEEEEECCTTCCCSEEEECTTSS-E
T ss_pred             cEEEEEEEccCC---CcEEEEEEEC------------------------CCCCEEEeeEEccCCCCCCcEEEECCCCC-E
Confidence            367889998753   3566666631                        12344444433  3445788999999997 5


Q ss_pred             EEEEeCCCeEEEEeCC-CCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc-eEEEEe-------------CCCcEEE
Q 014433          141 IATKTVSAEVYVFDYS-KHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-HLLSGS-------------DDAQICL  205 (424)
Q Consensus       141 latg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~i  205 (424)
                      |++++.+ .|.+|++. .        +..........+ +.+.+++|+|++.. ++++++             .+|.+.+
T Consensus        54 l~~~~~~-~v~~~~~~~~--------g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           54 IYGAAMK-KWSSFAVKSP--------TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EEEEEBT-EEEEEEEEET--------TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EEEEccc-eEEEEEECCC--------CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            6666766 99999986 3        111111111111 23667999999874 244553             6899999


Q ss_pred             EeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC-CCCCCCCeeeee--ccCCCeeEEEe
Q 014433          206 WDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR-TPSVSKPVQSVV--AHQSEVNCLAF  281 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~-~~~~~~~~~~~~--~~~~~v~~v~~  281 (424)
                      |++......  ...+..+. .+...+.+++|+|+++.++++...++.|++||+. +++. ..+..+.  .+...+..++|
T Consensus       124 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~  200 (365)
T 1jof_A          124 FSVSETGKL--EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEECTTCCE--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEE
T ss_pred             EccCCCCcC--cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEE
Confidence            999743211  11111111 2456799999999998776555457899999998 5442 1222232  23567899999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCC-CCcc---eEe---c----CCCC------CEEEEE-EcCCCCcEEEEEECCC---
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKI-STAL---HTF---D----SHKE------EVFQVG-WNPKNETILASCCLGR---  340 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~---~~~---~----~h~~------~v~~~~-~sp~~~~~l~s~~~dg---  340 (424)
                      +|+|++++++...++.|.+|++... ++..   ..+   .    +|..      .+..++ |+|+|+.++++...++   
T Consensus       201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~  280 (365)
T 1jof_A          201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence            9999865444445789999987531 3321   112   1    1122      588999 9999975444433333   


Q ss_pred             --eEEEeeCCCCCcccCCCCcCCCCCeeeE-EEcCCCCCcceEEeCC---CCCcEEEEEeC-CCcEEEEecCCccC
Q 014433          341 --RLMVWDLSRIDEEQTPEDAEDGPPELLF-IHGGHTSKISDFSWNP---CEDWVISSVAE-DNILQIWQMAENIY  409 (424)
Q Consensus       341 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~---~~~~~l~s~~~-dg~i~vw~~~~~~~  409 (424)
                        .|.+|++.....           ...+. ....+...+..++|+|   ++++ |++++. ++.|++|++....+
T Consensus       281 ~~~i~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          281 QGYIAGFKLRDCGS-----------IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             CCEEEEEEECTTSC-----------EEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSCEEEEEEEETTEE
T ss_pred             CCeEEEEEECCCCC-----------EEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCCeEEEEEEchhhC
Confidence              899999863111           01111 2333455678899999   7995 555554 58999999976643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=4.7e-20  Score=168.00  Aligned_cols=246  Identities=13%  Similarity=0.029  Sum_probs=171.1

Q ss_pred             EEeccCC---ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-C----CCceeEEEecCCCC
Q 014433          120 QQINHDG---EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-H----STEGYGLSWSKFKE  191 (424)
Q Consensus       120 ~~~~h~~---~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~~~~~~  191 (424)
                      ..+.+..   .+..++|+|+++.+++++..++.|.+||+.+          ......+.. +    ...+.+++|+|++.
T Consensus        25 ~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~   94 (337)
T 1pby_B           25 KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT----------GETLGRIDLSTPEERVKSLFGAALSPDGK   94 (337)
T ss_dssp             EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT----------CCEEEEEECCBTTEEEECTTCEEECTTSS
T ss_pred             EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC----------CCeEeeEEcCCcccccccccceEECCCCC
Confidence            3444444   5889999999987778888889999999976          233333332 1    12577899999988


Q ss_pred             ceEEEEe------------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          192 GHLLSGS------------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       192 ~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                       +|++++            .++.|.+||+.+++      ....+. ....+.+++|+|+++.++++   ++.|.+||+.+
T Consensus        95 -~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~  163 (337)
T 1pby_B           95 -TLAIYESPVRLELTHFEVQPTRVALYDAETLS------RRKAFE-APRQITMLAWARDGSKLYGL---GRDLHVMDPEA  163 (337)
T ss_dssp             -EEEEEEEEEEECSSCEEECCCEEEEEETTTTE------EEEEEE-CCSSCCCEEECTTSSCEEEE---SSSEEEEETTT
T ss_pred             -EEEEEecccccccccccccCceEEEEECCCCc------EEEEEe-CCCCcceeEECCCCCEEEEe---CCeEEEEECCC
Confidence             577665            57999999997652      223333 24567889999999877644   68999999988


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-----------------------cEEEEECCCCCCcceEecCC
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----------------------TVKLFDLRKISTALHTFDSH  316 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-----------------------~i~iwd~~~~~~~~~~~~~h  316 (424)
                      ++.   +..+..+. ....+.|+|++..+++++..++                       .|.+||+.+.......+..+
T Consensus       164 ~~~---~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          164 GTL---VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             TEE---EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CcE---eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            653   33333322 1123378998886554443333                       46899998743223344556


Q ss_pred             CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014433          317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      ...+.+++|+|+++ +++++  ++.|.+||+.++              +.+..+..+ ..+.+++|+|++++ |++++.+
T Consensus       240 ~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~--------------~~~~~~~~~-~~~~~~~~s~dg~~-l~~~~~~  300 (337)
T 1pby_B          240 DVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN--------------ASIKRVPLP-HSYYSVNVSTDGST-VWLGGAL  300 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT--------------EEEEEEECS-SCCCEEEECTTSCE-EEEESBS
T ss_pred             CCceeeEEECCCCC-EEEEe--CCeEEEEECCCC--------------cCcceecCC-CceeeEEECCCCCE-EEEEcCC
Confidence            67889999999997 45555  789999999764              333333322 35789999999994 5566889


Q ss_pred             CcEEEEecCCccC
Q 014433          397 NILQIWQMAENIY  409 (424)
Q Consensus       397 g~i~vw~~~~~~~  409 (424)
                      +.|++||+.++..
T Consensus       301 ~~i~v~d~~~~~~  313 (337)
T 1pby_B          301 GDLAAYDAETLEK  313 (337)
T ss_dssp             SEEEEEETTTCCE
T ss_pred             CcEEEEECcCCcE
Confidence            9999999987743

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=2.6e-20  Score=188.46  Aligned_cols=241  Identities=11%  Similarity=0.155  Sum_probs=167.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeC-CC-----eEEEEeCCCCCCCCCCCCCCCCcEEEecCC--------------------
Q 014433          125 DGEVNRARYMPQNPFLIATKTV-SA-----EVYVFDYSKHPSKPPLDGACSPDLRLRGHS--------------------  178 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~--------------------  178 (424)
                      ...|..++|+|+|+ .||+++. ++     .|++||+.+          ......+..+.                    
T Consensus        36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGS----------GQTRLLVDSKVVLPGTETLSDEEKARRERQR  104 (741)
T ss_dssp             CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTT----------CCEEEEECGGGTC------------------
T ss_pred             CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCC----------CceeEccchhhcccccccccchhhhhhhhhh
Confidence            45688999999997 6777777 88     999999987          22222333222                    


Q ss_pred             ----CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE
Q 014433          179 ----TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (424)
Q Consensus       179 ----~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  254 (424)
                          ..+.+++|+|+++ +|++++. +.|.+||+.++...    ....+..|...+..++|+|+++.+ +.++ ++.|++
T Consensus       105 ~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~----~~~~l~~~~~~~~~~~~SPDG~~l-a~~~-~~~i~~  176 (741)
T 2ecf_A          105 IAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKA----AVRQLTHGEGFATDAKLSPKGGFV-SFIR-GRNLWV  176 (741)
T ss_dssp             --CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTT----SCCBCCCSSSCEEEEEECTTSSEE-EEEE-TTEEEE
T ss_pred             hccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcc----eEEEcccCCcccccccCCCCCCEE-EEEe-CCcEEE
Confidence                2378999999998 6777776 99999999876200    112244567889999999999855 4555 569999


Q ss_pred             EEcCCCCCCCCeeeeeccCC----------------CeeEEEecCCCCeEEEEEeCCC----------------------
Q 014433          255 WDLRTPSVSKPVQSVVAHQS----------------EVNCLAFNPFNEWILATGSTDK----------------------  296 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~~~----------------~v~~v~~~~~~~~~l~tg~~dg----------------------  296 (424)
                      ||+.++..   ......+..                .+.+++|+|+|+. |++++.|+                      
T Consensus       177 ~d~~~g~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          177 IDLASGRQ---MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             EETTTTEE---EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             EecCCCCE---EEeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            99987542   221122222                1478999999996 66665554                      


Q ss_pred             -----------cEEEEECCC-CCCcceEec--CCCCCEEEEEEcCCCCcEEEEEE----CCCeEEEeeCCCCCcccCCCC
Q 014433          297 -----------TVKLFDLRK-ISTALHTFD--SHKEEVFQVGWNPKNETILASCC----LGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       297 -----------~i~iwd~~~-~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~  358 (424)
                                 .|.+||+.+ .. ......  .|...+..++| |+|+.+++++.    .+..|++||+.++..      
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~------  324 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ------  324 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE------
T ss_pred             cCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce------
Confidence                       788899875 33 222222  46788999999 99975444433    256799999987532      


Q ss_pred             cCCCCCeeeEEEcCCCC----CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          359 AEDGPPELLFIHGGHTS----KISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                              ......+..    .+..++|+|+++ ++++++.||.++||.+.
T Consensus       325 --------~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          325 --------RVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID  366 (741)
T ss_dssp             --------EEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred             --------EEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence                    222222222    457899999999 78888999988888775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3.9e-20  Score=181.87  Aligned_cols=233  Identities=10%  Similarity=0.051  Sum_probs=169.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeC---
Q 014433          125 DGEVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSD---  199 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~---  199 (424)
                      ..+|++++|+|+|+ .||+++. +|+++||++..           .....+..|. ..+.+++|+|+ . ++++++.   
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~-----------g~~~~lt~~~~~~~~~~~~spd-~-~l~~~~~~~g   86 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDG-----------GETVKLNREPINSVLDPHYGVG-R-VILVRDVSKG   86 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEET-----------TEEEECCSSCCSEECEECTTCS-E-EEEEEECSTT
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcC-----------CCcEeeecccccccccccCCCC-e-EEEEeccCCC
Confidence            45799999999998 5666665 99999999854           2234455565 58999999997 4 7777765   


Q ss_pred             CCcEEEEeCCC--CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCee
Q 014433          200 DAQICLWDINA--APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN  277 (424)
Q Consensus       200 dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  277 (424)
                      +....+|.+..  .....      .+. ....+...+|+|+++.++++.+.++.+.+||+.+++.    ..+..+..  .
T Consensus        87 ~~~~~l~~~~~~~~g~~~------~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~~~~~--~  153 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGEEQ------RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----RELARLPG--F  153 (582)
T ss_dssp             SCCEEEEEEETTSTTCCE------ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----EEEEEESS--C
T ss_pred             CcceEEEEEeccCCCccc------ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE----EEeecCCC--c
Confidence            45566766544  22111      111 1223446688898876555555555666999987652    23333333  8


Q ss_pred             EEEecCCCCeEEEEEeCC----CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCC
Q 014433          278 CLAFNPFNEWILATGSTD----KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRID  351 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~  351 (424)
                      +++|+|+|+. |++++.+    +.|++||+.+ ++ ...+..|...+..++|||+|+ .|+++..++  .|++||+..+.
T Consensus       154 ~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          154 GFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSS-GG-LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             EEEEEEETTE-EEEEEEEETTEEEEEEEETTT-CC-CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTCC
T ss_pred             eEEECCCCCE-EEEEEEcCCCCeEEEEEcCCC-CC-ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCCc
Confidence            9999999994 7766665    6899999986 33 446778888999999999997 577888888  89999998642


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEE--------eCCCCCcEEEEEeCCCcEEEEec
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFS--------WNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                                    .. ...+|...+..++        |+|+|. ++++++.|+.+++|++
T Consensus       230 --------------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          230 --------------VE-DLELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID  274 (582)
T ss_dssp             --------------EE-ECCCSCSHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred             --------------EE-EccCCCcChhhhhhccccceeEcCCCc-EEEEEEcCCcEEEEEE
Confidence                          22 5566777777788        999995 8999999999999999

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=5.2e-20  Score=185.67  Aligned_cols=238  Identities=10%  Similarity=0.066  Sum_probs=165.2

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC---ceeEEEecCCCCceEEEEeCC---
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST---EGYGLSWSKFKEGHLLSGSDD---  200 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~d---  200 (424)
                      .+.+++|+|++. ++++ +.||.|++||+.+          ......+..|..   .|.+++|+|+|+ +|++++.+   
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~----------g~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~   84 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVET----------NTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPI   84 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGG----------CCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCC
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCC----------CcEEEEeccccccccccceEEECCCCC-EEEEEecCccc
Confidence            467799999997 6666 6899999999987          333455555654   489999999998 68887764   


Q ss_pred             ------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          201 ------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       201 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                            +.|.+||+.++..    ..+.....|...+..++|+|+++.+ |.++. +.|++||+.++..   ......+..
T Consensus        85 ~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG~~l-a~~~~-~~i~~~~~~~g~~---~~~~~~~~~  155 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQL-IFIFE-NNIYYCAHVGKQA---IRVVSTGKE  155 (723)
T ss_dssp             SSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCE-EEEET-TEEEEESSSSSCC---EEEECCCBT
T ss_pred             eeecceeeEEEEECCCCce----EeccCCccccccccccEECCCCCEE-EEEEC-CeEEEEECCCCce---EEEecCCCC
Confidence                  7888999987643    1122223455568999999999865 45554 8999999988653   333333232


Q ss_pred             C------------------eeEEEecCCCCeEEEEEeCCC----------------------------------cEEEEE
Q 014433          275 E------------------VNCLAFNPFNEWILATGSTDK----------------------------------TVKLFD  302 (424)
Q Consensus       275 ~------------------v~~v~~~~~~~~~l~tg~~dg----------------------------------~i~iwd  302 (424)
                      .                  +.+++|+|+|+. |++++.++                                  .|++||
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d  234 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG  234 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence            2                  378999999995 66655432                                  799999


Q ss_pred             CCCCCCcceEecCC------CCCEEEEEEcCCCCcEEEEEEC----CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-
Q 014433          303 LRKISTALHTFDSH------KEEVFQVGWNPKNETILASCCL----GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-  371 (424)
Q Consensus       303 ~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-  371 (424)
                      +.+ +.....+..+      ...+.+++|+|+|+ +|++.+.    +..|.+||+.++..              ..... 
T Consensus       235 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~~--------------~~~~~~  298 (723)
T 1xfd_A          235 LNG-PTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGVC--------------TKKHED  298 (723)
T ss_dssp             SSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCCE--------------EEEEEE
T ss_pred             CCC-CceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCcc--------------eEEEEe
Confidence            987 4444555543      56799999999996 5655543    35799999987532              22221 


Q ss_pred             CCCCCc----ceEEeCCCCCcEEEE-EeCCC------cEEEEe
Q 014433          372 GHTSKI----SDFSWNPCEDWVISS-VAEDN------ILQIWQ  403 (424)
Q Consensus       372 ~h~~~v----~~~~~~~~~~~~l~s-~~~dg------~i~vw~  403 (424)
                      .+...+    ..++|+|+|+.+++. +..++      .|.+|+
T Consensus       299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            233333    378999999976554 55677      566777

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=3.9e-19  Score=162.76  Aligned_cols=238  Identities=10%  Similarity=0.008  Sum_probs=164.2

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  208 (424)
                      .+++++++ .++++++.++.|++||..+          .+....+..+. ..+..++|+|++..+++++..++.|.+||+
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVAS----------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTT----------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCC----------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence            45677755 4889999999999999976          33344444332 257899999998755566667899999999


Q ss_pred             CCCCCCCcccceeeeec-C-----CccEeeEEEecCCCcEEEEEeC-----------CCeEEEEEcCCCCCCCCeeeeec
Q 014433          209 NAAPKNKSLEAMQIFKV-H-----EGVVEDVAWHLRHEYLFGSVGD-----------DQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~s~~~-----------dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      .+++.      ...+.. +     ...+..++|+|+++.++++...           ++.|.+||+.+++....+.... 
T Consensus        73 ~t~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  145 (349)
T 1jmx_B           73 DTCKN------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-  145 (349)
T ss_dssp             TTTEE------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred             CCCcE------EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence            76532      222221 1     2337899999999876644432           4899999998855333344433 


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC----------------------------------
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK----------------------------------  317 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~----------------------------------  317 (424)
                      +...+.+++|+|++. +++ ++  +.|.+||+.+ ++.+..+..+.                                  
T Consensus       146 ~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (349)
T 1jmx_B          146 MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  220 (349)
T ss_dssp             CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             CCCcccceeECCCCc-EEE-cc--CcEEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence            344689999999998 555 33  3499999987 44444443221                                  


Q ss_pred             ----------------------------------CCEEEEEEcC-CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          318 ----------------------------------EEVFQVGWNP-KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       318 ----------------------------------~~v~~~~~sp-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                                                        ..+..++|+| +++ +++++  ++.|.+||+.++            
T Consensus       221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~------------  285 (349)
T 1jmx_B          221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQR------------  285 (349)
T ss_dssp             ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTT------------
T ss_pred             CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccC------------
Confidence                                              1456778889 886 45555  889999999874            


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                        +.+..+.. ...+.+++|+|+++++ ++++.++.|++||+.++..
T Consensus       286 --~~~~~~~~-~~~~~~~~~s~dg~~l-~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          286 --KLIKAANL-DHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             --EEEEEEEC-SSCCCEEEECSSSSCE-EEESBSSEEEEEETTTTEE
T ss_pred             --eEEEEEcC-CCCccceEECCCCCEE-EEecCCCeEEEEeccccce
Confidence              33333332 2347899999999864 4567889999999987643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=2.3e-19  Score=180.45  Aligned_cols=258  Identities=12%  Similarity=0.125  Sum_probs=173.9

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--------------CceeEEE
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--------------TEGYGLS  185 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~  185 (424)
                      ....+.+.+.+++|+|+++ .||++ .++.|++|++.......     .........+.              ..+.+++
T Consensus       115 ~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~-----g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~  187 (706)
T 2z3z_A          115 YLFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGM-----SRAIAVTIDGTETLVYGQAVHQREFGIEKGTF  187 (706)
T ss_dssp             EEECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCC-----CCCEESCSCCBTTEEESSCCGGGCTTCCCSEE
T ss_pred             EccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccC-----CCcEEeccCCCCCeEcccchhhhhcCCCceEE
Confidence            3456778899999999997 56664 67999999987510000     00111111111              2258999


Q ss_pred             ecCCCCceEEEEe---------------------------------CCCcEEEEeCCCCCCCCcccceeeeecCCccEee
Q 014433          186 WSKFKEGHLLSGS---------------------------------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVED  232 (424)
Q Consensus       186 ~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  232 (424)
                      |+|+++ +|++++                                 .+..|.+||+.++..    ..+.....|...+.+
T Consensus       188 ~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          188 WSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTN  262 (706)
T ss_dssp             ECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEE
T ss_pred             ECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEee
Confidence            999998 677776                                 446799999976532    111111246678999


Q ss_pred             EEEecCCCcEEEEEeCCC-----eEEEEEcCCCCCCCCeeeeeccC---CCeeEEEecC--CCCeEEEEEeCCCcEEEEE
Q 014433          233 VAWHLRHEYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQSVVAHQ---SEVNCLAFNP--FNEWILATGSTDKTVKLFD  302 (424)
Q Consensus       233 ~~~~~~~~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~---~~v~~v~~~~--~~~~~l~tg~~dg~i~iwd  302 (424)
                      ++|+|+++.++ +++.++     .|++||+.++.....+.. ..+.   ..+.+++|+|  +++ ++++++.++.++||+
T Consensus       263 ~~~spdg~~l~-~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          263 LSWSPDENILY-VAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEECTTSSEEE-EEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEE
T ss_pred             EEEECCCCEEE-EEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEE
Confidence            99999998665 555554     899999988732111111 1122   2347789999  887 688888999999998


Q ss_pred             CCCCCCcceEecCCCCCEEE-EEEcCCCCcEEEEEECCC----eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCc
Q 014433          303 LRKISTALHTFDSHKEEVFQ-VGWNPKNETILASCCLGR----RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI  377 (424)
Q Consensus       303 ~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  377 (424)
                      +...+..+..+..|...+.. ++|+|+++.++++++.++    .|..||+..+.               ...+ .|...+
T Consensus       340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---------------~~~l-~~~~~~  403 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---------------TKDL-TPESGM  403 (706)
T ss_dssp             EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---------------CEES-CCSSSE
T ss_pred             EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---------------ceec-cCCCce
Confidence            87435667777778888877 899999986666666665    56666765532               1111 245568


Q ss_pred             ceEEeCCCCCcEEEEEeCC---CcEEEEecCCcc
Q 014433          378 SDFSWNPCEDWVISSVAED---NILQIWQMAENI  408 (424)
Q Consensus       378 ~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~  408 (424)
                      ..++|+|++++++++++.+   +.|++|++.++.
T Consensus       404 ~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          404 HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            8999999999655555544   569999998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=2.3e-18  Score=157.84  Aligned_cols=223  Identities=6%  Similarity=0.045  Sum_probs=151.8

Q ss_pred             cEEEEEE-eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---------CCCceeEE
Q 014433          115 KVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---------HSTEGYGL  184 (424)
Q Consensus       115 ~~~~~~~-~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~l  184 (424)
                      ..+.+.. ..+...+..++|+|+++.+++++..++.|.+|++...       +.......+..         +...+.++
T Consensus        74 ~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~-------g~~~~~~~~~~~~~~p~~~~~~~~~~~~  146 (347)
T 3hfq_A           74 TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD-------GALTLTDTVQHSGHGPRPEQDGSHIHYT  146 (347)
T ss_dssp             EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT-------SCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred             cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC-------CCeeecceeecCCCCCCccccCCCceEE
Confidence            3333333 4577889999999999855554447899999999641       11122222221         12347889


Q ss_pred             EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-
Q 014433          185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-  262 (424)
Q Consensus       185 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-  262 (424)
                      +|+|++. ++++...++.|.+|++.....   +.....+.. ....+..++|+|+++.++++...++.|.+|++..... 
T Consensus       147 ~~spdg~-l~v~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  222 (347)
T 3hfq_A          147 DLTPDNR-LAVIDLGSDKVYVYNVSDAGQ---LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA  222 (347)
T ss_dssp             EECTTSC-EEEEETTTTEEEEEEECTTSC---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             EECCCCc-EEEEeCCCCEEEEEEECCCCc---EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            9999998 788888899999999983211   122222222 2336788999999988887788899999999885221 


Q ss_pred             CCCeeeeeccC------CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--CcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          263 SKPVQSVVAHQ------SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       263 ~~~~~~~~~~~------~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      ...+..+....      ..+..++|+|+|++++++...++.|.+||+...+  ..+..+..+...+..++|+|+++.+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          223 FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred             eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence            11122222222      3488899999999766788889999999997422  345556666677899999999975444


Q ss_pred             EEECCCeEEEeeCC
Q 014433          335 SCCLGRRLMVWDLS  348 (424)
Q Consensus       335 s~~~dg~i~iwd~~  348 (424)
                      ++..++.|.+|++.
T Consensus       303 ~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          303 VNQNTDNATLYARD  316 (347)
T ss_dssp             EETTTTEEEEEEEC
T ss_pred             EEcCCCcEEEEEEe
Confidence            44456899999554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=2.1e-19  Score=180.75  Aligned_cols=244  Identities=10%  Similarity=0.075  Sum_probs=169.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...|.+++|+|+ ..++++  .++.|++||+.+           .....+..+...+.+++|+|+|+ .|+++ .++.|+
T Consensus        81 ~~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~-----------~~~~~l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~  144 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLF--TQGGLVGFDMLA-----------RKVTYLFDTNEETASLDFSPVGD-RVAYV-RNHNLY  144 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEE--ETTEEEEEETTT-----------TEEEEEECCTTCCTTCEECTTSS-EEEEE-ETTEEE
T ss_pred             ccCceeEEECCC-CeEEEE--ECCEEEEEECCC-----------CceEEccCCcccccCCcCCCCCC-EEEEE-ECCeEE
Confidence            367999999998 544444  359999999976           22345566777899999999998 57774 679999


Q ss_pred             EEeCCC-----CCCCCcccceeeeecCCc--------------cEeeEEEecCCCcEEEEEe------------------
Q 014433          205 LWDINA-----APKNKSLEAMQIFKVHEG--------------VVEDVAWHLRHEYLFGSVG------------------  247 (424)
Q Consensus       205 iwd~~~-----~~~~~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~~~s~~------------------  247 (424)
                      +|++.+     +...      .....+..              .+.+++|+|+++.++ +++                  
T Consensus       145 v~~~~~~~~~~g~~~------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la-~~~~d~~~~~~~~~~~~~~~~  217 (706)
T 2z3z_A          145 IARGGKLGEGMSRAI------AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA-FYRMDQSMVKPTPIVDYHPLE  217 (706)
T ss_dssp             EEECBCTTSCCCCCE------ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE-EEEEECTTSCCEEEEECCSSS
T ss_pred             EEecCcccccCCCcE------EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE-EEEECCCCCceEEeeccCCCC
Confidence            999987     5321      11111222              258999999998665 554                  


Q ss_pred             ---------------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCC
Q 014433          248 ---------------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKIS  307 (424)
Q Consensus       248 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~  307 (424)
                                     .+..|++||+.++... .+.....|...+.+++|+|+++. |++++.++     .|.+||+.+ +
T Consensus       218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~-g  294 (706)
T 2z3z_A          218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAET-G  294 (706)
T ss_dssp             CEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTT-C
T ss_pred             CceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCC-C
Confidence                           4467999999876521 11111246678999999999985 66666554     899999987 4


Q ss_pred             CcceEec--CCCC---CEEEEEEcC--CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce-
Q 014433          308 TALHTFD--SHKE---EVFQVGWNP--KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD-  379 (424)
Q Consensus       308 ~~~~~~~--~h~~---~v~~~~~sp--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-  379 (424)
                      .....+.  .+..   .+..++|+|  +++ ++++++.|+.++||.+....             ..+..+..|...+.. 
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~-------------~~~~~l~~~~~~v~~~  360 (706)
T 2z3z_A          295 RFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTG-------------RLIRQVTKGEWEVTNF  360 (706)
T ss_dssp             CEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTS-------------CEEEECCCSSSCEEEE
T ss_pred             ceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCC-------------CEEEecCCCCeEEEee
Confidence            2222222  2222   346789999  986 78888899999999876211             334455666667776 


Q ss_pred             EEeCCCCCcEEEEEeCCC----cEEEEecCCcc
Q 014433          380 FSWNPCEDWVISSVAEDN----ILQIWQMAENI  408 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg----~i~vw~~~~~~  408 (424)
                      ++|+|+++.++++++.++    .|..|++.++.
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            799999997667766665    67777776654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=6.5e-19  Score=177.66  Aligned_cols=246  Identities=7%  Similarity=0.005  Sum_probs=158.5

Q ss_pred             ceeEEEecCCCCcEEEEEeCC---------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVS---------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      .|.+++|+|+++ .||+++.+         +.|++||+.+.        ....+....+|...+..++|+|+|+ .|+.+
T Consensus        62 ~v~~~~~SpDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~--------~~~~l~~~~~~~~~~~~~~~SPdG~-~la~~  131 (723)
T 1xfd_A           62 RAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHG--------DPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFI  131 (723)
T ss_dssp             TCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSC--------CCEECCCTTCCSCCCSBCCBCSSTT-CEEEE
T ss_pred             ccceEEECCCCC-EEEEEecCccceeecceeeEEEEECCCC--------ceEeccCCccccccccccEECCCCC-EEEEE
Confidence            489999999997 67776653         78999999872        1111111223555688999999998 58877


Q ss_pred             eCCCcEEEEeCCCCCCCCcccceeeeecCCc------------------cEeeEEEecCCCcEEEEEeCCC---------
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEG------------------VVEDVAWHLRHEYLFGSVGDDQ---------  250 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~s~~~dg---------  250 (424)
                      +. +.|++||+.++..      ......+..                  .+.+++|+|+++.++ +++.++         
T Consensus       132 ~~-~~i~~~~~~~g~~------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la-~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          132 FE-NNIYYCAHVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIMELP  203 (723)
T ss_dssp             ET-TEEEEESSSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEEEC
T ss_pred             EC-CeEEEEECCCCce------EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE-EEEECCCccceEEee
Confidence            75 7999999987643      111222222                  237899999998665 544332         


Q ss_pred             -------------------------eEEEEEcCCCCCCCCeeeeec------cCCCeeEEEecCCCCeEEEEEeC----C
Q 014433          251 -------------------------YLLIWDLRTPSVSKPVQSVVA------HQSEVNCLAFNPFNEWILATGST----D  295 (424)
Q Consensus       251 -------------------------~i~i~d~~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~l~tg~~----d  295 (424)
                                               .|++||+.++..   ...+..      +...+.+++|+|+|+ +|++...    +
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~  279 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNV  279 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCe
Confidence                                     799999988653   233333      256789999999998 4555432    3


Q ss_pred             CcEEEEECCCCCCcceEecC-CCCCE----EEEEEcCCCCcEEEE-EECCC------eEEEeeCCCCCcccCCCCcCCCC
Q 014433          296 KTVKLFDLRKISTALHTFDS-HKEEV----FQVGWNPKNETILAS-CCLGR------RLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       296 g~i~iwd~~~~~~~~~~~~~-h~~~v----~~~~~sp~~~~~l~s-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      ..|.+||+.+ ++....+.. +...+    ..++|+|+|+.++++ +..++      .|.+||+......          
T Consensus       280 ~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------  348 (723)
T 1xfd_A          280 SILTLCDATT-GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----------  348 (723)
T ss_dssp             EEEEEEETTT-CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----------
T ss_pred             EEEEEEeCCC-CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----------
Confidence            5799999987 454444432 33444    378999999876655 56677      4666663222110          


Q ss_pred             CeeeEEEcCCCCCcce-EEeCCCCCcEEEEEeCC--CcEEEEecCC
Q 014433          364 PELLFIHGGHTSKISD-FSWNPCEDWVISSVAED--NILQIWQMAE  406 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d--g~i~vw~~~~  406 (424)
                       .....+..+...+.. ++|+|+++.+++++..+  +.++||++..
T Consensus       349 -~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          349 -DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             -CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             -cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence             001111122223444 69999999655555555  8899999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=3.3e-18  Score=179.15  Aligned_cols=246  Identities=11%  Similarity=0.102  Sum_probs=180.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..|.+.+.++.|+++  .++++++.++.+.||.+...         ......+..|. .+..++|+|++. .|+.+ .++
T Consensus       200 ~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~---------g~~~~~l~~~~-~~~~~~~SpDG~-~la~~-~~~  265 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLD---------GKDLRKHTSFT-DYYPRHLNTDGR-RILFS-KGG  265 (1045)
T ss_dssp             ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETT---------SCSCEECCCCC-SSCEEEEEESSS-CEEEE-ETT
T ss_pred             cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCC---------CCcceEecCCC-CcceeeEcCCCC-EEEEE-eCC
Confidence            689999999999986  47788888899999987641         12234455554 467789999998 57766 489


Q ss_pred             cEEEEeCCCCCCCCcccc-----eeeeecCCccEeeEEEe-cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC-
Q 014433          202 QICLWDINAAPKNKSLEA-----MQIFKVHEGVVEDVAWH-LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-  274 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  274 (424)
                      .|.+|++..... ..+..     ......|...+.+++|+ |++..++ +++ ++.|.+|++..+.    ...+..|.. 
T Consensus       266 ~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la-~~~-~~~i~~~~~~~~~----~~~~~~~~~~  338 (1045)
T 1k32_A          266 SIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA-FVS-RGQAFIQDVSGTY----VLKVPEPLRI  338 (1045)
T ss_dssp             EEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE-EEE-TTEEEEECTTSSB----EEECSCCSCE
T ss_pred             EEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEE-EEE-cCEEEEEcCCCCc----eEEccCCCcc
Confidence            999999833211 00000     00011245579999999 9997664 554 8899999998654    334556666 


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEE-EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVK-LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~-iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      .+..++|+ +++. |+.++.++.+. +||+.. +. ...+..|...+..++|+|+++ .|++++.++.|++||+.++   
T Consensus       339 ~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg---  410 (1045)
T 1k32_A          339 RYVRRGGD-TKVA-FIHGTREGDFLGIYDYRT-GK-AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETG---  410 (1045)
T ss_dssp             EEEEECSS-SEEE-EEEEETTEEEEEEEETTT-CC-EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTC---
T ss_pred             eEEeeeEc-CCCe-EEEEECCCceEEEEECCC-CC-ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCC---
Confidence            89999999 8874 77777788888 899876 33 344447788999999999996 6889999999999999875   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC----------CcEEEEecCCcc
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED----------NILQIWQMAENI  408 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------g~i~vw~~~~~~  408 (424)
                                 .+.....+|...+..++|+|+|++ |++++.+          +.|++||+.++.
T Consensus       411 -----------~~~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          411 -----------KPTVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             -----------CEEEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             -----------ceEEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc
Confidence                       334445578888999999999995 5555443          489999998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.8e-18  Score=181.11  Aligned_cols=234  Identities=9%  Similarity=0.027  Sum_probs=177.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----------CCCceeEEEec-CCCCce
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----------HSTEGYGLSWS-KFKEGH  193 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~~  193 (424)
                      ..+..++|+|++. .||.+ .++.|++|++..           ..+..+.+           |...+.+++|+ |++. .
T Consensus       245 ~~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~-----------~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~  310 (1045)
T 1k32_A          245 TDYYPRHLNTDGR-RILFS-KGGSIYIFNPDT-----------EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-L  310 (1045)
T ss_dssp             CSSCEEEEEESSS-CEEEE-ETTEEEEECTTT-----------CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-C
T ss_pred             CCcceeeEcCCCC-EEEEE-eCCEEEEecCCc-----------eEeeeeccCcccccccccccccccceeeecCCCCC-E
Confidence            3567889999997 56665 489999999843           11112222           45578999999 9998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc-cEeeEEEecCCCcEEEEEeCCCeEE-EEEcCCCCCCCCeeeeec
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG-VVEDVAWHLRHEYLFGSVGDDQYLL-IWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~~~dg~i~-i~d~~~~~~~~~~~~~~~  271 (424)
                      |++++ ++.|.+|++..+.       ...+..|.. .+..++|+ ++..+ ++++.++.+. +||+..+.    ...+..
T Consensus       311 la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l-~~~s~~~~l~~~~d~~~~~----~~~l~~  376 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF-IHGTREGDFLGIYDYRTGK----AEKFEE  376 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE-EEEETTEEEEEEEETTTCC----EEECCC
T ss_pred             EEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE-EEEECCCceEEEEECCCCC----ceEecC
Confidence            77776 7899999987542       223445666 89999999 87655 5677788888 99988754    334446


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC----------Ce
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG----------RR  341 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d----------g~  341 (424)
                      |...+.+++|+|+++ .|++++.++.|++||+.+ ++.......|...+.+++|+|+|+ +|++++.+          +.
T Consensus       377 ~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~  453 (1045)
T 1k32_A          377 NLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQA  453 (1045)
T ss_dssp             CCCSEEEEEECTTSS-EEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEE
T ss_pred             CccceeeeEECCCCC-EEEEECCCCeEEEEECCC-CceEEeccCCCCCccceEECCCCC-eEEEEecCccccccCCCCCe
Confidence            778899999999998 588899999999999987 566666668889999999999997 46665554          48


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      |++||+..+              . ...+..|...+..++|+|+|+ .|++++.++...+|+...
T Consensus       454 i~l~d~~~g--------------~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          454 IHVYDMEGR--------------K-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEEEETTTT--------------E-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSS
T ss_pred             EEEEECCCC--------------c-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhc
Confidence            999999863              2 455567777788999999999 577778778788887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=2.7e-17  Score=151.58  Aligned_cols=241  Identities=10%  Similarity=0.108  Sum_probs=158.2

Q ss_pred             EEEEEe----CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC----CcEEEEeCCCC
Q 014433          140 LIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD----AQICLWDINAA  211 (424)
Q Consensus       140 ~latg~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~  211 (424)
                      .+.+|+    .++.|++|.++...      +........  +...+..++|+|++. +|++++.+    +.|.+|++...
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~------g~~~~~~~~--~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEET------GESLPLSDA--EVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTT------CCEEEEEEE--ECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETT
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCC------CCEEEeecc--cCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCC
Confidence            455554    35689999886411      112222222  677788999999987 68877775    89999998753


Q ss_pred             CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec-----------cCCCeeEEE
Q 014433          212 PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----------HQSEVNCLA  280 (424)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~~~~v~~v~  280 (424)
                      .  ..+..+.....+......+++  +++.++++...++.|.+|++........+.....           +...+.+++
T Consensus        86 ~--g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           86 K--GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR  161 (361)
T ss_dssp             T--TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred             C--CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence            1  122233334445556777777  6777776666889999999976443222221111           123458899


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCC------c------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKIST------A------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~------~------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      |+|+++++++++..++.|.+|++.....      .      ......+...+..++|+|+++.+++++..++.|.+|++.
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~  241 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA  241 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec
Confidence            9999997677776789999999886332      1      111223456788999999997544444478999999997


Q ss_pred             CCCcccCCCCcCCCCCeeeEEE---cCCCCCcceEEeCCCCCcEEEEEeC-CCcEEEEecC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIH---GGHTSKISDFSWNPCEDWVISSVAE-DNILQIWQMA  405 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw~~~  405 (424)
                      .+..            ..+...   ..+......++|+|++++++++... ++.|.+|++.
T Consensus       242 ~g~~------------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          242 DGML------------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             TTEE------------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCce------------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            5321            112222   2233456799999999965566555 6899999996

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=1.2e-17  Score=164.14  Aligned_cols=274  Identities=11%  Similarity=0.095  Sum_probs=183.7

Q ss_pred             CCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEE
Q 014433           41 EWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ  120 (424)
Q Consensus        41 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (424)
                      ..|..++.|.|++          .++++++..    +..+.|+.+.                          .+..  .+
T Consensus        21 ~~~~~~~~~~~DG----------~~la~~s~~----~g~~~lw~~~--------------------------~g~~--~~   58 (582)
T 3o4h_A           21 AVEKYSLQGVVDG----------DKLLVVGFS----EGSVNAYLYD--------------------------GGET--VK   58 (582)
T ss_dssp             HSCEEEEEEEETT----------TEEEEEEEE----TTEEEEEEEE--------------------------TTEE--EE
T ss_pred             ccchheeecCCCC----------CeEEEEEcc----CCceeEEEEc--------------------------CCCc--Ee
Confidence            4579999999987          456665532    3356666652                          0111  22


Q ss_pred             EeccC-CceeEEEecCCCCcEEEEEeC---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          121 QINHD-GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       121 ~~~h~-~~v~~~~~~p~~~~~latg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ...|. ..+..++|+|+  .++++++.   +....||.+.....       .. ...+..+ ..+...+|+|++...+++
T Consensus        59 lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~-------g~-~~~l~~~-~~~~~~~~s~dg~~~~~~  127 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRP-------GE-EQRLEAV-KPMRILSGVDTGEAVVFT  127 (582)
T ss_dssp             CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTST-------TC-CEECTTS-CSBEEEEEEECSSCEEEE
T ss_pred             eecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCC-------Cc-cccccCC-CCceeeeeCCCCCeEEEE
Confidence            23455 58999999997  47777664   45556655533000       01 1122222 234467889988765555


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeeecc
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      ++.++.+.+||+.++..      .. +..+..  .+++|+|+|+.+ ++++.+    +.|++||+.+++.    ..+..|
T Consensus       128 s~~~~~~~l~d~~~g~~------~~-l~~~~~--~~~~~spDG~~l-a~~~~~~~~~~~i~~~d~~~g~~----~~l~~~  193 (582)
T 3o4h_A          128 GATEDRVALYALDGGGL------RE-LARLPG--FGFVSDIRGDLI-AGLGFFGGGRVSLFTSNLSSGGL----RVFDSG  193 (582)
T ss_dssp             EECSSCEEEEEEETTEE------EE-EEEESS--CEEEEEEETTEE-EEEEEEETTEEEEEEEETTTCCC----EEECCS
T ss_pred             ecCCCCceEEEccCCcE------EE-eecCCC--ceEEECCCCCEE-EEEEEcCCCCeEEEEEcCCCCCc----eEeecC
Confidence            55555666999976521      12 222333  889999999865 455555    7799999988663    456678


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEE--------EcCCCCcEEEEEECCCeE
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVG--------WNPKNETILASCCLGRRL  342 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~--------~sp~~~~~l~s~~~dg~i  342 (424)
                      ...+..++|+|+|+. |+++..++  .|++||+.+ ++.. .+..|...+..++        |+|+| .++++++.|+.+
T Consensus       194 ~~~~~~~~~SpDG~~-l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~  269 (582)
T 3o4h_A          194 EGSFSSASISPGMKV-TAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRS  269 (582)
T ss_dssp             SCEEEEEEECTTSCE-EEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEE
T ss_pred             CCccccceECCCCCE-EEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcE
Confidence            888999999999995 66888888  899999987 4554 6677777777777        99999 689999999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc---EEEEecCC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI---LQIWQMAE  406 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~---i~vw~~~~  406 (424)
                      +||++  +.              ...   .+...|.+++|+ +++ ++++++.+..   +.+|+..+
T Consensus       270 ~l~~~--g~--------------~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          270 AVFID--GE--------------RVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEET--TE--------------EEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEE--CC--------------eec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence            99999  32              111   123457889999 887 5677666643   66666653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=1.4e-17  Score=151.43  Aligned_cols=229  Identities=11%  Similarity=0.000  Sum_probs=158.1

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-C-ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-T-EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS  216 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  216 (424)
                      .++++++.++.|++||..+          ......+.... . .+.+++|+|++..++++++.++.|.+||+.+++.   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---   68 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---
T ss_pred             cEEEEcCCCCeEEEEECCC----------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---
Confidence            3788899999999999976          33344444222 1 5789999999985566777789999999987632   


Q ss_pred             ccceeeeec-----CCccEeeEEEecCCCcEEEEEe-----------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          217 LEAMQIFKV-----HEGVVEDVAWHLRHEYLFGSVG-----------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       217 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                         +..+..     +...+..++|+|+++.++++..           .++.|.+||+.+++.   +..+.. ...+.+++
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~-~~~~~~~~  141 (337)
T 1pby_B           69 ---LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFEA-PRQITMLA  141 (337)
T ss_dssp             ---EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEEC-CSSCCCEE
T ss_pred             ---EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEeC-CCCcceeE
Confidence               222221     1236788999999987664431           579999999987553   333333 45688899


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--------------------
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--------------------  340 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--------------------  340 (424)
                      |+|++.. |+++  ++.|.+||+.+ ++.+..+..+.. ...+.|+|++..+++++..++                    
T Consensus       142 ~s~dg~~-l~~~--~~~i~~~d~~~-~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          142 WARDGSK-LYGL--GRDLHVMDPEA-GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             ECTTSSC-EEEE--SSSEEEEETTT-TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             ECCCCCE-EEEe--CCeEEEEECCC-CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence            9999986 4454  68999999987 566666654331 113378999875544443343                    


Q ss_pred             ---eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          341 ---RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       341 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                         .|.+||+..+..            . ......+...+.+++|+|++++ ++++  ++.|.+||+.++.
T Consensus       217 ~~~~v~~~d~~~~~~------------~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~  271 (337)
T 1pby_B          217 YRTGLLTMDLETGEM------------A-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             EEEEEEEEETTTCCE------------E-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTE
T ss_pred             cccceEEEeCCCCCc------------e-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCc
Confidence               468899877532            1 2334455667889999999995 5554  6899999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=3.3e-16  Score=142.35  Aligned_cols=243  Identities=16%  Similarity=0.116  Sum_probs=173.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCC------------------------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCc
Q 014433          126 GEVNRARYMPQNPFLIATKTVS------------------------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTE  180 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~  180 (424)
                      +.+.+|+++|++. ++++...+                        +.|.+||..+          ......+. ++-..
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------g~~~~~~~~~~~~~   92 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN----------AEILQSSGKNLFYL   92 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT----------CCEEEEECTTTCSS
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC----------CeEEeccCCCccCC
Confidence            5789999999986 67776666                        4799999865          22222222 34457


Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeee---------ecCCccEeeEEEecCCCcEEEEEe-CCC
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF---------KVHEGVVEDVAWHLRHEYLFGSVG-DDQ  250 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~s~~-~dg  250 (424)
                      +.+++++|++. ++++...++.|++|+......     .+..+         ..+-.....++++|++..++++.+ .++
T Consensus        93 p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~-----~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           93 PHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEG-----PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEECTTCSSC-----CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             ceEEEECCCCC-EEEEECCCCEEEEEeCCCCeE-----EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            88999999888 788888899999999864311     11111         233446889999994445777776 689


Q ss_pred             eEEEEEcCCCCCCCCeeeeec----------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVA----------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKE  318 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~  318 (424)
                      .|++||.. +..   +..+..          +-.....|+++|++..++++...++.|++||..+ ++.+..+.  .+..
T Consensus       167 ~I~~~~~~-g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~  241 (329)
T 3fvz_A          167 RIVQFSPS-GKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGR  241 (329)
T ss_dssp             EEEEECTT-SCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTT
T ss_pred             eEEEEcCC-CCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCC
Confidence            99999943 332   333321          1234889999998566888888899999999985 56666663  4567


Q ss_pred             CEEEEEEcCCCCcEEEEEE-------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE---cCCCCCcceEEeCCCCCc
Q 014433          319 EVFQVGWNPKNETILASCC-------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH---GGHTSKISDFSWNPCEDW  388 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~  388 (424)
                      .+..++|+| + .++++.+       .+..|++|++..+              .++..+   .++...+.+++++|+|. 
T Consensus       242 ~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g--------------~~~~~~~~~~~~~~~p~~ia~~~dG~-  304 (329)
T 3fvz_A          242 NVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSG--------------EIIDVFKPVRKHFDMPHDIVASEDGT-  304 (329)
T ss_dssp             CEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTC--------------CEEEEECCSSSCCSSEEEEEECTTSE-
T ss_pred             CcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCC--------------eEEEEEcCCCCccCCeeEEEECCCCC-
Confidence            889999999 3 3343333       2448999998775              334444   35666789999999995 


Q ss_pred             EEEEEeCCCcEEEEecCCc
Q 014433          389 VISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       389 ~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++++...++.|++|++...
T Consensus       305 lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEESSSCCEEEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCcc
Confidence            8999899999999998653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=5e-18  Score=171.10  Aligned_cols=240  Identities=10%  Similarity=0.077  Sum_probs=158.4

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC---ceeEEEecCCCCceEEEEeC-------
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST---EGYGLSWSKFKEGHLLSGSD-------  199 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~~-------  199 (424)
                      .++|+|++. ++++ +.|+.|++||+.+          ......+.+|..   .+.+++|+|+|+ +|++++.       
T Consensus        20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~~~~   86 (719)
T 1z68_A           20 FPNWISGQE-YLHQ-SADNNIVLYNIET----------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKLWRY   86 (719)
T ss_dssp             CCEESSSSE-EEEE-CTTSCEEEEESSS----------CCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEECSSS
T ss_pred             ccEECCCCe-EEEE-cCCCCEEEEEcCC----------CcEEEEEccccccccceeeEEECCCCC-eEEEEecCceeEEe
Confidence            679999984 5655 4699999999987          233333444433   389999999998 6777765       


Q ss_pred             --CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCCC-
Q 014433          200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSE-  275 (424)
Q Consensus       200 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~-  275 (424)
                        ++.|++||+.++.....    ..   ....+..++|+|+|+.++ .+ .++.|++||+.++..   .... .++... 
T Consensus        87 s~~~~i~~~d~~~g~~~~~----~~---l~~~~~~~~~SPDG~~la-~~-~~~~i~~~~~~~g~~---~~l~~~~~~~~v  154 (719)
T 1z68_A           87 SYTATYYIYDLSNGEFVRG----NE---LPRPIQYLCWSPVGSKLA-YV-YQNNIYLKQRPGDPP---FQITFNGRENKI  154 (719)
T ss_dssp             CEEEEEEEEETTTTEECCS----SC---CCSSBCCEEECSSTTCEE-EE-ETTEEEEESSTTSCC---EECCCCCBTTTE
T ss_pred             ecceEEEEEECCCCccccc----ee---cCcccccceECCCCCEEE-EE-ECCeEEEEeCCCCCc---EEEecCCCcCCe
Confidence              78999999987632100    11   124688999999998664 55 478999999987653   2111 122221 


Q ss_pred             ----------------eeEEEecCCCCeEEEEEeCCC----------------------------------cEEEEECCC
Q 014433          276 ----------------VNCLAFNPFNEWILATGSTDK----------------------------------TVKLFDLRK  305 (424)
Q Consensus       276 ----------------v~~v~~~~~~~~~l~tg~~dg----------------------------------~i~iwd~~~  305 (424)
                                      ..+++|+|+|+. ||+++.|.                                  .|++||+.+
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~  233 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY  233 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred             EcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence                            258999999995 66665442                                  788999987


Q ss_pred             CCCcc--------eEecCCCCCEEEEEEcCCCCcEEEEEECC----CeEEEee----CCCCCcccCCCCcCCCCCeee-E
Q 014433          306 ISTAL--------HTFDSHKEEVFQVGWNPKNETILASCCLG----RRLMVWD----LSRIDEEQTPEDAEDGPPELL-F  368 (424)
Q Consensus       306 ~~~~~--------~~~~~h~~~v~~~~~sp~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~-~  368 (424)
                       +...        ..+..|...+.+++|+|++ .++++....    ..|.+||    +.++...           .++ .
T Consensus       234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-----------~~~~~  300 (719)
T 1z68_A          234 -PAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP-----------KTQEH  300 (719)
T ss_dssp             -HHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC-----------GGGEE
T ss_pred             -CCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE-----------EEEec
Confidence             3332        1234578889999999997 466664432    2488888    6554321           111 1


Q ss_pred             EEcCCCCCcc-----eEEeCCCCCcEEE-EEeCCC--cEEEEecCCcc
Q 014433          369 IHGGHTSKIS-----DFSWNPCEDWVIS-SVAEDN--ILQIWQMAENI  408 (424)
Q Consensus       369 ~~~~h~~~v~-----~~~~~~~~~~~l~-s~~~dg--~i~vw~~~~~~  408 (424)
                      ...+|...+.     .+.|+|+|+.+++ +...+|  .|.+|++.++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            1135666666     8899999996554 344555  46666766554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=6.8e-17  Score=162.80  Aligned_cols=247  Identities=12%  Similarity=0.052  Sum_probs=157.0

Q ss_pred             ceeEEEecCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTV---------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      .+.+++|+|+|+ .||+++.         ++.|++||+.+.        .......+   ...+..++|+|+|+ .|+.+
T Consensus        61 ~~~~~~~SpDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g--------~~~~~~~l---~~~~~~~~~SPDG~-~la~~  127 (719)
T 1z68_A           61 NASNYGLSPDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNG--------EFVRGNEL---PRPIQYLCWSPVGS-KLAYV  127 (719)
T ss_dssp             TCSEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTT--------EECCSSCC---CSSBCCEEECSSTT-CEEEE
T ss_pred             ceeeEEECCCCC-eEEEEecCceeEEeecceEEEEEECCCC--------ccccceec---CcccccceECCCCC-EEEEE
Confidence            389999999997 5666655         689999999872        11000111   24688999999998 57777


Q ss_pred             eCCCcEEEEeCCCCCCCCccc---ceeeeecCCcc---------EeeEEEecCCCcEEEEEeCCC---------------
Q 014433          198 SDDAQICLWDINAAPKNKSLE---AMQIFKVHEGV---------VEDVAWHLRHEYLFGSVGDDQ---------------  250 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~---------v~~~~~~~~~~~~~~s~~~dg---------------  250 (424)
                      . ++.|++|++.++.......   ....+.++...         ..+++|+|+++.++ +++.|.               
T Consensus       128 ~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la-~~~~d~~~~~~~~~~~~~~~~  205 (719)
T 1z68_A          128 Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLA-YAEFNDTDIPVIAYSYYGDEQ  205 (719)
T ss_dssp             E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEE-EEEEECTTSCEEEEEECCSSS
T ss_pred             E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEE-EEEECCCCCceEEeeccCCCC
Confidence            5 7899999998764311000   00011222222         25899999998664 555331               


Q ss_pred             -------------------eEEEEEcCCCCCCC--Ce---eeeeccCCCeeEEEecCCCCeEEEEEeCC----CcEEEEE
Q 014433          251 -------------------YLLIWDLRTPSVSK--PV---QSVVAHQSEVNCLAFNPFNEWILATGSTD----KTVKLFD  302 (424)
Q Consensus       251 -------------------~i~i~d~~~~~~~~--~~---~~~~~~~~~v~~v~~~~~~~~~l~tg~~d----g~i~iwd  302 (424)
                                         .|++||+.++....  .+   ..+..|...+.+++|+|++. ++++....    ..|.+||
T Consensus       206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          206 YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEE
T ss_pred             CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEc
Confidence                               78899998754210  00   12235777899999999965 66664432    2488899


Q ss_pred             ----CCCCCCcceEe----cCCCCCEE-----EEEEcCCCCcEEE-EEECCCe--EEEeeCCCCCcccCCCCcCCCCCee
Q 014433          303 ----LRKISTALHTF----DSHKEEVF-----QVGWNPKNETILA-SCCLGRR--LMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       303 ----~~~~~~~~~~~----~~h~~~v~-----~~~~sp~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                          +.+ ++....+    ..|...+.     .++|+|+|+.+++ ++..+|.  |.+||+....               
T Consensus       285 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------------  348 (719)
T 1z68_A          285 FREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------------  348 (719)
T ss_dssp             ECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------
T ss_pred             ccCCCCC-CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------
Confidence                665 4444444    45666676     8999999986554 3445664  6666665432               


Q ss_pred             eEEEcCCCCCcceEEeCCCCCcEEEEEeC----CCcEEEEecCC
Q 014433          367 LFIHGGHTSKISDFSWNPCEDWVISSVAE----DNILQIWQMAE  406 (424)
Q Consensus       367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~i~vw~~~~  406 (424)
                      ...+..+...+..+.+. ++..+++++..    ++..++|.+..
T Consensus       349 ~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          349 AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            22333445557777777 77766666654    58899998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2.6e-15  Score=133.47  Aligned_cols=236  Identities=15%  Similarity=0.154  Sum_probs=165.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe------cCCCceeEEEec-CCCCceEEEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR------GHSTEGYGLSWS-KFKEGHLLSG  197 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~l~s~  197 (424)
                      -..+.+++++|++. ++++...++.|++|+...           .....+.      ++...+.++++. +++. ++++.
T Consensus        29 ~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~   95 (286)
T 1q7f_A           29 FTEPSGVAVNAQND-IIVADTNNHRIQIFDKEG-----------RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTE   95 (286)
T ss_dssp             BSCEEEEEECTTCC-EEEEEGGGTEEEEECTTS-----------CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEE
T ss_pred             cCCCceEEECCCCC-EEEEECCCCEEEEECCCC-----------cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEc
Confidence            35678999999886 788778889999999764           2222232      234568899995 5443 45554


Q ss_pred             eC-CCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee--ccC
Q 014433          198 SD-DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV--AHQ  273 (424)
Q Consensus       198 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~  273 (424)
                      .. ++.|.+||.. +.      .+..+. .+...+.++++++++. ++++...++.|.+||... .   .+..+.  .+.
T Consensus        96 ~~~~~~i~~~d~~-g~------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~  163 (286)
T 1q7f_A           96 RSPTHQIQIYNQY-GQ------FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N---VLHKFGCSKHL  163 (286)
T ss_dssp             CGGGCEEEEECTT-SC------EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C---EEEEEECTTTC
T ss_pred             CCCCCEEEEECCC-Cc------EEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC-C---EEEEeCCCCcc
Confidence            33 8899999943 32      122222 2345789999999985 776777789999999653 2   133332  344


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC--CCCEEEEEEcCCCCcEEEEEECCC-eEEEeeCCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLGR-RLMVWDLSRI  350 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~~  350 (424)
                      ..+..+++++++. ++++...++.|++||..  +..+..+..+  ...+..+++++++. ++++...++ .|.+|+... 
T Consensus       164 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g-  238 (286)
T 1q7f_A          164 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG-  238 (286)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS-
T ss_pred             CCcEEEEECCCCC-EEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC-
Confidence            5689999999886 77787788999999975  3555566443  36789999999984 777777775 999999643 


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                                    ..+..+..+  ...+.+++++|++. ++++ +.|+.|++|++..
T Consensus       239 --------------~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          239 --------------QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             --------------CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred             --------------CEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence                          223333333  23467899999998 6777 5799999999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.6e-16  Score=147.76  Aligned_cols=250  Identities=13%  Similarity=0.109  Sum_probs=158.4

Q ss_pred             ccCCceeE-----EEecCCCCcEEEEEeC-CC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceE
Q 014433          123 NHDGEVNR-----ARYMPQNPFLIATKTV-SA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       123 ~h~~~v~~-----~~~~p~~~~~latg~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  194 (424)
                      .|......     .+|+|+++. ||.++. +|  .|.+||+..          ........++...+.++.|+|++. .|
T Consensus        28 ~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~g~~~l~~~d~~~----------g~~~~lt~~~~~~~~~~~~spdg~-~l   95 (388)
T 3pe7_A           28 PPDVTCHRNYFYQKCFTRDGSK-LLFGGAFDGPWNYYLLDLNT----------QVATQLTEGRGDNTFGGFLSPDDD-AL   95 (388)
T ss_dssp             CTTSCEECCCTTSCCBCTTSCE-EEEEECTTSSCEEEEEETTT----------CEEEECCCSSCBCSSSCEECTTSS-EE
T ss_pred             CCcccccchhhcCccCCCCCCE-EEEEEcCCCCceEEEEeCCC----------CceEEeeeCCCCCccceEEcCCCC-EE
Confidence            44444444     889999985 555554 67  488888776          222222334555555789999998 68


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEE--EecCCCcEEEE---------------------EeCCCe
Q 014433          195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA--WHLRHEYLFGS---------------------VGDDQY  251 (424)
Q Consensus       195 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~s---------------------~~~dg~  251 (424)
                      +.++.++.|++||+.++..      ......+...+....  +++++..+++.                     ...+..
T Consensus        96 ~~~~~~~~l~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           96 FYVKDGRNLMRVDLATLEE------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             EEEETTTEEEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             EEEeCCCeEEEEECCCCcc------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            8888899999999987632      222333444444333  47888754322                     123467


Q ss_pred             EEEEEcCCCCCCCCeeeeeccCCCeeEEEecC-CCCeEEEEEeCC------CcEEEEECCCCCCcceEecCCC--CCEEE
Q 014433          252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTD------KTVKLFDLRKISTALHTFDSHK--EEVFQ  322 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~h~--~~v~~  322 (424)
                      |.+||+.+++    ...+..+...+..++|+| ++.. |+....+      ..|.++|+..  .....+..+.  ..+..
T Consensus       170 l~~~d~~~g~----~~~l~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          170 LMRVDLKTGE----STVILQENQWLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCTH  242 (388)
T ss_dssp             EEEEETTTCC----EEEEEEESSCEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEEE
T ss_pred             EEEEECCCCc----eEEeecCCccccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCC--CceEEeeeCCCCccccc
Confidence            9999998865    344445677899999999 8885 5554442      3788888764  3334444444  35888


Q ss_pred             EEEcCCCCcEEEEEECCC----eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC---CcceEEeCCCCCcEEEEE--
Q 014433          323 VGWNPKNETILASCCLGR----RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS---KISDFSWNPCEDWVISSV--  393 (424)
Q Consensus       323 ~~~sp~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~--  393 (424)
                      ++|+|+|+.+++++..++    .|.+||+..+..            ..+....++..   ....++|+|+|+.++++.  
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN------------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE------------EEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCce------------EEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence            999999986555444333    399999987542            22333333110   123357999999655443  


Q ss_pred             ------eCCCcEEEEecCCccC
Q 014433          394 ------AEDNILQIWQMAENIY  409 (424)
Q Consensus       394 ------~~dg~i~vw~~~~~~~  409 (424)
                            ..+..|++|++.++..
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          311 DSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             ------CCCCEEEEEETTTTEE
T ss_pred             ccccccCCCCEEEEEeccCCce
Confidence                  4567899999988654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=4.4e-16  Score=157.25  Aligned_cols=246  Identities=11%  Similarity=0.095  Sum_probs=160.1

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCc-----eeEEEecCCCCceEEEEeCC-
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDD-  200 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~d-  200 (424)
                      ....++|+|++. +++++  ||.|++||+.+          ......+.+|...     ...++|||+++ +|+.++.+ 
T Consensus        18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~   83 (740)
T 4a5s_A           18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEY----------GNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYV   83 (740)
T ss_dssp             CCCCEEECSSSE-EEEEE--TTEEEEEETTT----------CCEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEE
T ss_pred             cccccEECCCCc-EEEEc--CCcEEEEECCC----------CceEEEEechhhhhhcccccceEECCCCC-EEEEEECCe
Confidence            456799999985 77775  89999999987          2334445666533     23478899998 67777765 


Q ss_pred             --------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       201 --------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                              +.+.+||+.+++.       ..+..|...+...+|+|+|+.+. .+ .++.|++||+.++.... + +..++
T Consensus        84 ~~~r~~~~~~~~~~d~~~~~~-------~~l~~~~~~~~~~~~SPdG~~la-~~-~~~~i~~~~~~~~~~~~-l-t~~g~  152 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKRQL-------ITEERIPNNTQWVTWSPVGHKLA-YV-WNNDIYVKIEPNLPSYR-I-TWTGK  152 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTTEE-------CCSSCCCTTEEEEEECSSTTCEE-EE-ETTEEEEESSTTSCCEE-C-CSCCB
T ss_pred             eeEEEccceEEEEEECCCCcE-------EEcccCCCcceeeEECCCCCEEE-EE-ECCeEEEEECCCCceEE-E-cCCCC
Confidence                    5677999987632       22445677899999999998664 44 57899999998765311 1 11122


Q ss_pred             CC-----------------CeeEEEecCCCCeEEEEEeCC-C-----------------------------------cEE
Q 014433          273 QS-----------------EVNCLAFNPFNEWILATGSTD-K-----------------------------------TVK  299 (424)
Q Consensus       273 ~~-----------------~v~~v~~~~~~~~~l~tg~~d-g-----------------------------------~i~  299 (424)
                      ..                 ....+.|+|+|+. ||.++.| +                                   .|+
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            22                 2245899999995 5555422 1                                   478


Q ss_pred             EEECCC---CCC-cceEec------CCCCCEEEEEEcCCCCcEEEEE-EC---CCeEEEeeCCCCC----cccCCCCcCC
Q 014433          300 LFDLRK---IST-ALHTFD------SHKEEVFQVGWNPKNETILASC-CL---GRRLMVWDLSRID----EEQTPEDAED  361 (424)
Q Consensus       300 iwd~~~---~~~-~~~~~~------~h~~~v~~~~~sp~~~~~l~s~-~~---dg~i~iwd~~~~~----~~~~~~~~~~  361 (424)
                      +||+.+   ... ....+.      .|...+..++|+|+++ +++.. ..   +..|.+||+.++.    +...      
T Consensus       232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~------  304 (740)
T 4a5s_A          232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNCLVA------  304 (740)
T ss_dssp             EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEECGG------
T ss_pred             EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccceeEE------
Confidence            888876   321 223333      2677899999999996 44443 32   2369999998764    1110      


Q ss_pred             CCCeeeEEEcCCCCCcc-----eEEeCCCCCcEEEEEe-CCC--cEEEEecCCccC
Q 014433          362 GPPELLFIHGGHTSKIS-----DFSWNPCEDWVISSVA-EDN--ILQIWQMAENIY  409 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~l~s~~-~dg--~i~vw~~~~~~~  409 (424)
                         . .....+|...|.     ...|+|+|+.+++..+ .+|  .|++|++.++..
T Consensus       305 ---~-~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          305 ---R-QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             ---G-CEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             ---E-EeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence               1 111134555554     7899999996552444 444  577788776543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.72  E-value=1.2e-15  Score=139.39  Aligned_cols=196  Identities=12%  Similarity=0.116  Sum_probs=138.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC------CCceeEEEecCCCCceEEEEeCC
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH------STEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+..++|+|+++.+++++..++.|.+||+.+          ......+..+      ...+.+++|+|+++ +|++++.+
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t----------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~  112 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT----------CKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNP  112 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT----------TEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC----------CcEEEEEEcccccccccccccceEECCCCC-EEEEEccc
Confidence            6889999999976677777889999999976          2333334322      22378899999998 67777754


Q ss_pred             ------------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          201 ------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       201 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                                  +.|.+||+.++....   .+.... +...+.+++|+|++. +++ ++  +.|.+||+.+++.   +..
T Consensus       113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~---~~~  181 (349)
T 1jmx_B          113 TQRLNDHYVVKPPRLEVFSTADGLEAK---PVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKY---TVA  181 (349)
T ss_dssp             EEECSSCEEECCCEEEEEEGGGGGGBC---CSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCE---EEE
T ss_pred             ccccccccccCCCeEEEEECCCccccc---eeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCce---ecc
Confidence                        899999998643211   122232 344688999999998 664 43  3499999987653   211


Q ss_pred             eecc--------------------------------------------------------------------CCCeeEEE
Q 014433          269 VVAH--------------------------------------------------------------------QSEVNCLA  280 (424)
Q Consensus       269 ~~~~--------------------------------------------------------------------~~~v~~v~  280 (424)
                      +..+                                                                    ...+.+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (349)
T 1jmx_B          182 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL  261 (349)
T ss_dssp             ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeE
Confidence            1111                                                                    12456778


Q ss_pred             ecC-CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          281 FNP-FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       281 ~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      |+| ++.. ++++  ++.|.+||+.+ ++.+..+.. ...+.+++|+|+++. |++++.++.|.+||+.+.
T Consensus       262 ~sp~dg~~-l~~~--~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          262 RSPKDPNQ-IYGV--LNRLAKYDLKQ-RKLIKAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             ECSSCTTE-EEEE--ESEEEEEETTT-TEEEEEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTT
T ss_pred             ecCCCCCE-EEEE--cCeEEEEECcc-CeEEEEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEecccc
Confidence            889 8885 5555  88999999987 566666653 346789999999975 555778899999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=7.9e-16  Score=143.03  Aligned_cols=243  Identities=7%  Similarity=0.007  Sum_probs=152.9

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEe--cCCCCceEEE-----
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--SKFKEGHLLS-----  196 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s-----  196 (424)
                      |...+..++|+|+++ .|+.++.++.|++||+.+          ......+..+...+....|  +|++. +++.     
T Consensus        79 ~~~~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~----------g~~~~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~  146 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDD-ALFYVKDGRNLMRVDLAT----------LEENVVYQVPAEWVGYGTWVANSDCT-KLVGIEIRR  146 (388)
T ss_dssp             SCBCSSSCEECTTSS-EEEEEETTTEEEEEETTT----------CCEEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEG
T ss_pred             CCCCccceEEcCCCC-EEEEEeCCCeEEEEECCC----------CcceeeeechhhcccccceeECCCCC-eeccccccC
Confidence            334445678999997 677778889999999987          2333334445554544444  78777 4553     


Q ss_pred             -----------------EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec-CCCcEEEEEeC------CCeE
Q 014433          197 -----------------GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGD------DQYL  252 (424)
Q Consensus       197 -----------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~s~~~------dg~i  252 (424)
                                       ...+..|.+||+.++.       ...+..+...+..++|+| ++..++ .+..      ...|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~-~~~~~~~~~~~~~l  218 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVA-FCHEGPHDLVDARM  218 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEE-EEECSCTTTSSCSE
T ss_pred             cccccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEE-EEEecCCCCCcceE
Confidence                             2245789999998763       223334566789999999 887554 4443      3378


Q ss_pred             EEEEcCCCCCCCCeeeeeccC--CCeeEEEecCCCCeEEEEEeCCC----cEEEEECCCCCC-cceEecCCCCC---EEE
Q 014433          253 LIWDLRTPSVSKPVQSVVAHQ--SEVNCLAFNPFNEWILATGSTDK----TVKLFDLRKIST-ALHTFDSHKEE---VFQ  322 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l~tg~~dg----~i~iwd~~~~~~-~~~~~~~h~~~---v~~  322 (424)
                      .++|+....    ...+..+.  ..+..++|+|+|+.+++++..++    .|++||+.+... .+..+..+...   ...
T Consensus       219 ~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~  294 (388)
T 3pe7_A          219 WLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG  294 (388)
T ss_dssp             EEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred             EEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence            888876644    23333333  25778899999997545444333    399999987321 22233221000   122


Q ss_pred             EEEcCCCCcEEEEE--------ECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC-----------CcceEEeC
Q 014433          323 VGWNPKNETILASC--------CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS-----------KISDFSWN  383 (424)
Q Consensus       323 ~~~sp~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~  383 (424)
                      ++|+|+|+.++++.        ..+..|.+||+..+.               +..+..|..           .+..++|+
T Consensus       295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~l~~~~~~~~~~~~~~~~~~~~~~~s  359 (388)
T 3pe7_A          295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT---------------QHRVARHDTSWKVFEGDRQVTHPHPSFT  359 (388)
T ss_dssp             SEEEEEECCC------------CCCCEEEEEETTTTE---------------EEEEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred             CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc---------------eEEeccccCcccccccccccCCCCccCC
Confidence            37999998655443        456689999998642               222333333           47889999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecC
Q 014433          384 PCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      |+|+.+++++..+|...||.+.
T Consensus       360 pDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          360 PDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCCEEEEEecCCCceeEEEEE
Confidence            9999766677678888887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=8.6e-16  Score=153.28  Aligned_cols=247  Identities=8%  Similarity=-0.005  Sum_probs=163.3

Q ss_pred             EeccCCceeEEEecCCCCcEEEEE--eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCcee---------EEEec--
Q 014433          121 QINHDGEVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY---------GLSWS--  187 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--  187 (424)
                      ...|...+..++|+++. .+++..  +.++...||....          ......+..|...+.         ...|+  
T Consensus        19 ~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           19 VASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRA----------DGAEESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             HHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECT----------TSCEEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             HhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECC----------CCCcceeCCCCccccccccccCCccceeeee
Confidence            34688999999999864 355655  4578999999633          122344555655555         56666  


Q ss_pred             CCCCc-eEEEEeCCCcEEEEeCC--C-CCCCCcccceeeeec-----CCccEeeEEEecCCCcEEEEEeCC---------
Q 014433          188 KFKEG-HLLSGSDDAQICLWDIN--A-APKNKSLEAMQIFKV-----HEGVVEDVAWHLRHEYLFGSVGDD---------  249 (424)
Q Consensus       188 ~~~~~-~l~s~~~dg~i~iwd~~--~-~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~~d---------  249 (424)
                      |++.. ++++...+..|.++++.  . +. .      ..+..     |...+.+++|+|+++.++ +++.+         
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~-~------~~l~~~~~~~~~~~~~~~~~spDg~~l~-~~~~~~~~~~~~~~  159 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV-P------RPLTPVSAVGGGLRWADPVLLPERGEVW-CMAEEFTGEGPSDV  159 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCC-C------EECSCCCCSTTCEEEEEEEEETTTTEEE-EEEEEECSSSTTCE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCC-C------EeccCCccCCCCccccCcEECCCCCEEE-EEEecccCCCCCCc
Confidence            98884 33343346677777765  2 21 1      12222     567889999999998665 55554         


Q ss_pred             -CeEEEEEcCC------CCCCCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCC--------CcEEEEECCCCC---Ccc
Q 014433          250 -QYLLIWDLRT------PSVSKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTD--------KTVKLFDLRKIS---TAL  310 (424)
Q Consensus       250 -g~i~i~d~~~------~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~---~~~  310 (424)
                       ..|++||+.+      +.    ...+. .+...+..++|+|+|+. |+.++.+        ..|.+||+...+   ...
T Consensus       160 ~~~i~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA----VRELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG----SEESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             eeEEEEEECCCCccccCCc----eeEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence             5899999987      33    23444 45567888999999996 5555433        379999998324   333


Q ss_pred             eEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC--------CcceE
Q 014433          311 HTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS--------KISDF  380 (424)
Q Consensus       311 ~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~  380 (424)
                      .....|...+..++|+|+|+ +++++..++  .|.+||+..+....              ...++..        .+..+
T Consensus       235 ~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~--------------l~~~~~~~~~p~w~~~~~~~  299 (662)
T 3azo_A          235 TLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQ--------------LCRREEEFAGPLWTPGMRWF  299 (662)
T ss_dssp             EEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEE--------------SSCCSSBSSCCCCSTTCCSE
T ss_pred             EeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceee--------------cccccccccCccccccCceE
Confidence            44445678899999999997 888888888  56666654432111              1111111        15678


Q ss_pred             EeCCCCCcEEEEEeCCCcEEEE--ecCCcc
Q 014433          381 SWNPCEDWVISSVAEDNILQIW--QMAENI  408 (424)
Q Consensus       381 ~~~~~~~~~l~s~~~dg~i~vw--~~~~~~  408 (424)
                      +|+|++. ++++++. +.++||  ++.++.
T Consensus       300 ~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          300 APLANGL-IAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EECTTSC-EEEEEBS-SSCEEEEEETTTTE
T ss_pred             eEeCCCE-EEEEEEc-CccEEEEEECCCCc
Confidence            9999988 7888888 999999  554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=3.4e-14  Score=127.00  Aligned_cols=244  Identities=11%  Similarity=0.038  Sum_probs=168.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .+.....+++|+|++..+++++..++.|+.|+...           . ...+..+...+.++++++++. ++++...++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----------~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~   91 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----------Q-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRR   91 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----------C-EEEEESSCSSEEEEEECTTCC-EEEEETTTTE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----------C-eEEEECCCCCcceeeECCCCc-EEEEecCCCe
Confidence            45667889999999876888889999999999876           2 455666777899999999887 6666666789


Q ss_pred             EEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEE----e-------------CCCeEEEEEcCCCCCCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSV----G-------------DDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~----~-------------~dg~i~i~d~~~~~~~~  264 (424)
                      |.+||..++.... +  ..... .....+++++++|++. ++++.    +             ..+.|..++.. +.   
T Consensus        92 i~~~d~~~g~~~~-~--~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---  163 (296)
T 3e5z_A           92 LERQREPGGEWES-I--ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---  163 (296)
T ss_dssp             EEEECSTTCCEEE-E--ECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---
T ss_pred             EEEEcCCCCcEEE-E--eeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC---
Confidence            9999986653210 0  00111 1123567899999986 55552    2             13456555554 22   


Q ss_pred             CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---ceEecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA---LHTFDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                       +..+..+......++|+|++.. +++.+.++.|.+||+...+..   ...+..+...+.+++++++|. ++++.  ++.
T Consensus       164 -~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~  238 (296)
T 3e5z_A          164 -LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDG  238 (296)
T ss_dssp             -EEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTE
T ss_pred             -EEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCe
Confidence             4444556667899999999985 488888899999999732333   223333456678899999995 55555  788


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe-CCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW-NPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |.+|+...               ..+..+..+.. +.+++| .|+++. |+.++.+ .+.-+++.+..++
T Consensus       239 v~~~~~~g---------------~~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          239 VHVLTPDG---------------DELGRVLTPQT-TSNLCFGGPEGRT-LYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             EEEECTTS---------------CEEEEEECSSC-CCEEEEESTTSCE-EEEEETT-EEEEEECSCCBCC
T ss_pred             EEEECCCC---------------CEEEEEECCCC-ceeEEEECCCCCE-EEEEcCC-eEEEEEccccccc
Confidence            99999763               44555666666 899999 688884 5555555 4555666666554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=4.7e-15  Score=136.80  Aligned_cols=209  Identities=11%  Similarity=0.076  Sum_probs=136.2

Q ss_pred             CceeEEEecCCCCc-EEEEEe-------------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEe----cCCCceeEEEec
Q 014433          126 GEVNRARYMPQNPF-LIATKT-------------VSAEVYVFDYSKHPSKPPLDGACSPDLRLR----GHSTEGYGLSWS  187 (424)
Q Consensus       126 ~~v~~~~~~p~~~~-~latg~-------------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~  187 (424)
                      +.+.+++|+|+++. +++++.             .+|.+.+|++...         ......+.    .+...+.+++|+
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~s  153 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET---------GKLEKNVQNYEYQENTGIHGMVFD  153 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT---------CCEEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC---------CcCcceEeeEEeCCCCcceEEEEC
Confidence            34667999999974 344543             6899999999741         11112222    245678999999


Q ss_pred             CCCCceEEEEe-CCCcEEEEeCC-CCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC--CC
Q 014433          188 KFKEGHLLSGS-DDAQICLWDIN-AAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT--PS  261 (424)
Q Consensus       188 ~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~--~~  261 (424)
                      |+++ +|+++. .++.|.+|++. +++    +..+..+.  .|...+..++|+|+++.++++...++.|.+|++..  ++
T Consensus       154 pdG~-~l~~~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  228 (365)
T 1jof_A          154 PTET-YLYSADLTANKLWTHRKLASGE----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             TTSS-EEEEEETTTTEEEEEEECTTSC----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCCC-EEEEEcCCCCEEEEEEECCCCC----EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence            9998 566655 46899999997 432    12222232  23567899999999987765555688999998763  32


Q ss_pred             CCC---Ceeeee----ccCC------CeeEEE-ecCCCCeEEEEEeCCC-----cEEEEECCCCCCcce---EecCCCCC
Q 014433          262 VSK---PVQSVV----AHQS------EVNCLA-FNPFNEWILATGSTDK-----TVKLFDLRKISTALH---TFDSHKEE  319 (424)
Q Consensus       262 ~~~---~~~~~~----~~~~------~v~~v~-~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~---~~~~h~~~  319 (424)
                      ...   .+..+.    +|..      .+..++ |+|+|++++++...+.     .|.+|++...+....   ....+...
T Consensus       229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~  308 (365)
T 1jof_A          229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG  308 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC
T ss_pred             EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC
Confidence            100   011111    1122      478999 9999996544443333     899999963244332   23334556


Q ss_pred             EEEEEEcC---CCCcEEEEEEC-CCeEEEeeCCC
Q 014433          320 VFQVGWNP---KNETILASCCL-GRRLMVWDLSR  349 (424)
Q Consensus       320 v~~~~~sp---~~~~~l~s~~~-dg~i~iwd~~~  349 (424)
                      +..++|+|   +++ +|++++. ++.|.+|++..
T Consensus       309 ~~~~a~sp~~~dg~-~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          309 GHSNAVSPCPWSDE-WMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTCCCEEECTTCTT-EEEEECSSSCEEEEEEEET
T ss_pred             cccceecCCCcCCC-EEEEEEcCCCeEEEEEEch
Confidence            77899999   786 5666665 58999999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=2.5e-13  Score=123.42  Aligned_cols=236  Identities=9%  Similarity=0.043  Sum_probs=157.3

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC-
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-  200 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-  200 (424)
                      ..+...+.+++|+|++. +++++..++.|++||...          .........+...+.+++|++++. +++++..+ 
T Consensus        41 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~  108 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPET----------KEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDF  108 (333)
T ss_dssp             ESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTT----------CCEEEEEECSSSSEEEEEECTTSC-EEEEECTTS
T ss_pred             eccCccccCcEECCCCC-EEEEECCCCEEEEEeCCC----------CcEEEEeeCCCCCcceEEECCCCc-EEEEeCCCC
Confidence            34666789999999886 777888889999999876          122222224667899999999886 66666655 


Q ss_pred             ---CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC------CCeEEEEEcCCCCCCCCeeeeec
Q 014433          201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       201 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~------dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                         +.|.+||..+.....    ......+...+.+++++|++. ++++...      .+.|..+|..++.    +..+..
T Consensus       109 ~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~  179 (333)
T 2dg1_A          109 KSTGGIFAATENGDNLQD----IIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQ  179 (333)
T ss_dssp             SSCCEEEEECTTSCSCEE----EECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC----EEEEEE
T ss_pred             CCCceEEEEeCCCCEEEE----EEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCE----EEEeec
Confidence               689999987653210    100012345789999999986 5545443      3556666655433    223323


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE--------ecCCCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--------FDSHKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      ....+..++|+|++..++++.+.++.|.+||++..+..+..        +..+ ..+..+++++++. ++++...++.|.
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~  257 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVL  257 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEE
Confidence            34457899999999866666667889999999742333221        1222 4678899999985 777777788999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCC------CCCcceEEeCCCCCcEEEEEeC
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGH------TSKISDFSWNPCEDWVISSVAE  395 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~~  395 (424)
                      +||...               ..+..+..+      ...+.+++|+|++..+++++..
T Consensus       258 ~~d~~g---------------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          258 VFNKRG---------------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EECTTS---------------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCC---------------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999742               223333322      2268999999998755555554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=4.4e-14  Score=124.26  Aligned_cols=241  Identities=5%  Similarity=-0.013  Sum_probs=165.1

Q ss_pred             ceeEEEecCCCCcEEE-EEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          127 EVNRARYMPQNPFLIA-TKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       127 ~v~~~~~~p~~~~~la-tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...++++.+++. +++ +...++.|.+|+....          . ...+ ..+...+.++++.+++. ++++.. ++.|.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~----------~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGST----------G-TTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC----------------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCc----------c-cceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEE
Confidence            677899999886 666 5467889999987551          1 1111 22335678899999876 555555 88999


Q ss_pred             EEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          205 LWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      +||......       ..+. .....+..+++++++. ++++...++.|.+|+..+...   ..........+..+++++
T Consensus        91 ~~d~~~~~~-------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           91 TLAAGSNNQ-------TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             EECTTCSCC-------EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECT
T ss_pred             EEeCCCceE-------eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeC
Confidence            999865421       1111 1235688999999885 776777788999997654331   221122334678999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      ++. ++++...++.|.+||... .........+...+.++++++++ .++++...++.|.+|+......           
T Consensus       160 ~g~-l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-----------  225 (270)
T 1rwi_B          160 SGN-VYVTDTDNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----------  225 (270)
T ss_dssp             TCC-EEEEEGGGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC-----------
T ss_pred             CCC-EEEEECCCCEEEEEecCC-CceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc-----------
Confidence            887 677777788999999876 33222222333678999999998 5777777788999999865321           


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                         ......+...+.++++++++. ++++...++.|+++++.....+
T Consensus       226 ---~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          226 ---TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             ---EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGSC
T ss_pred             ---eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcccc
Confidence               111112334688999999998 8888889999999999876554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=5.2e-14  Score=141.44  Aligned_cols=252  Identities=9%  Similarity=0.023  Sum_probs=165.4

Q ss_pred             cCCceeEEEecCCCCcEEEEEeC-CC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          124 HDGEVNRARYMPQNPFLIATKTV-SA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~-dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      |...+..++|||+|+ +||.+.. .|    .|++||+.+        +  ....... ....+.+++|+|+++ .|+.++
T Consensus       123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~t--------g--~~~~~~~-~~~~~~~~~wspDg~-~l~~~~  189 (710)
T 2xdw_A          123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDG--------A--KELPDVL-ERVKFSCMAWTHDGK-GMFYNA  189 (710)
T ss_dssp             SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTT--------T--EEEEEEE-EEECSCCEEECTTSS-EEEEEE
T ss_pred             CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCC--------C--CCCcccc-cCcccceEEEEeCCC-EEEEEE
Confidence            334678899999998 4554443 33    899999987        2  2221111 112367899999998 577777


Q ss_pred             CCCc----------------EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC----CCeEEEEEcC
Q 014433          199 DDAQ----------------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----DQYLLIWDLR  258 (424)
Q Consensus       199 ~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~----dg~i~i~d~~  258 (424)
                      .++.                |++|++.++.....  .+.....|...+..+.|+|+++.++++...    +..|++||+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             ECCccccccccccccCCCCEEEEEECCCCcccce--EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            6655                99999976532111  111122245567899999999977655542    5789999998


Q ss_pred             C------CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCC-cceEecCCCC--CEEEEEEc
Q 014433          259 T------PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD---KTVKLFDLRKIST-ALHTFDSHKE--EVFQVGWN  326 (424)
Q Consensus       259 ~------~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~-~~~~~~~h~~--~v~~~~~s  326 (424)
                      +      +..  ....+..+...+.. .|+|+|..+++.+..+   +.|.+||+.+... ....+..|..  .+..++|+
T Consensus       268 ~~~~~~~~~~--~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~  344 (710)
T 2xdw_A          268 QESNGITGIL--KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV  344 (710)
T ss_dssp             GSSSSSCSSC--CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ccccccCCcc--ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence            6      321  24455555555554 4788888766555443   3699999987431 2345555544  68889999


Q ss_pred             CCCCcEEEEEECCCe--EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe---CCCcEEE
Q 014433          327 PKNETILASCCLGRR--LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA---EDNILQI  401 (424)
Q Consensus       327 p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~v  401 (424)
                      +++ .++++...|+.  |.+|++..+              ..+..+..+...+..+.++|+++.++++.+   ..+.|.+
T Consensus       345 ~~~-~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  409 (710)
T 2xdw_A          345 RSN-FLVLCYLHDVKNTLQLHDLATG--------------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (710)
T ss_dssp             TTT-EEEEEEEETTEEEEEEEETTTC--------------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             cCC-EEEEEEEECCEEEEEEEECCCC--------------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence            665 58888888885  455666443              233445556667888999999875555544   3578999


Q ss_pred             EecCCcc
Q 014433          402 WQMAENI  408 (424)
Q Consensus       402 w~~~~~~  408 (424)
                      ||+.++.
T Consensus       410 ~d~~tg~  416 (710)
T 2xdw_A          410 CDLTKEE  416 (710)
T ss_dssp             EETTSSS
T ss_pred             EECCCCc
Confidence            9998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3.4e-15  Score=139.01  Aligned_cols=241  Identities=10%  Similarity=0.118  Sum_probs=150.3

Q ss_pred             CceeEEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-eEEEecCCCCceEEEEeCCCc
Q 014433          126 GEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-YGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ..+..++|+|+|+.++++...+  ..|++|++..          .. ...+..+...+ ..+.|+|++. .|+.++.++.
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~----------~~-~~~l~~~~~~~~~~~~~spdg~-~l~~~~~~~~  103 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET----------QQ-AVQLTEGKGDNTFGGFISTDER-AFFYVKNELN  103 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT----------TE-EEECCCSSCBCTTTCEECTTSS-EEEEEETTTE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCC----------Cc-EEEeecCCCCccccceECCCCC-EEEEEEcCCc
Confidence            3477889999998555554433  3788888776          11 22333333333 3488999998 6888888889


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEee-------------------EEEecCCCcEEEEE----eCCCeEEEEEcCC
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVED-------------------VAWHLRHEYLFGSV----GDDQYLLIWDLRT  259 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~s~----~~dg~i~i~d~~~  259 (424)
                      |.+||+.++..      ......+......                   +.|+|+++.+++..    ..+..|.+||+.+
T Consensus       104 l~~~d~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~  177 (396)
T 3c5m_A          104 LMKVDLETLEE------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET  177 (396)
T ss_dssp             EEEEETTTCCE------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEEECCCCCc------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence            99999976532      1112212222212                   35677776543222    4567899999987


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecC-CCCeEEEEEeCC------CcEEEEECCCCCCcceEecCC--CCCEEEEEEcCCCC
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTD------KTVKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNE  330 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~h--~~~v~~~~~sp~~~  330 (424)
                      ++    ...+..+...+..+.|+| ++.. |+..+.+      ..|.+||+.. +. ...+..+  ...+..++|+|+++
T Consensus       178 g~----~~~~~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          178 GE----LEVIHQDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             CC----EEEEEEESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSS
T ss_pred             Cc----EEeeccCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCC
Confidence            65    233335677889999999 6764 4444433      3688888865 33 2333333  23588899999997


Q ss_pred             cEEEEEECC----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEe-----------
Q 014433          331 TILASCCLG----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVA-----------  394 (424)
Q Consensus       331 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~-----------  394 (424)
                      .+++++..+    +.|.+||+..+..            ..+....+    .. +.|+| +++ ++++++           
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~------------~~l~~~~~----~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLEN------------EEVMVMPP----CS-HLMSNFDGS-LMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCE------------EEEEECCS----EE-EEEECSSSS-EEEEEECCC--------
T ss_pred             EEEEEecCCCCccceEEEEECCCCCe------------EEeeeCCC----CC-CCccCCCCc-eEEEecCCcceeecccc
Confidence            644444332    4499999976432            22222222    22 88999 999 565543           


Q ss_pred             -----CCCcEEEEecCCccC
Q 014433          395 -----EDNILQIWQMAENIY  409 (424)
Q Consensus       395 -----~dg~i~vw~~~~~~~  409 (424)
                           .++.|++|++.++..
T Consensus       313 ~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          313 SYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             --CCCCCCEEEEEETTTTBC
T ss_pred             ccccCCCCcEEEEecccCce
Confidence                 347899999987754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=1.5e-14  Score=133.04  Aligned_cols=220  Identities=9%  Similarity=0.046  Sum_probs=139.5

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe----------CCCcEEEEeCCCCCCCC
Q 014433          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNK  215 (424)
Q Consensus       146 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~  215 (424)
                      .|+.|++||..+          .+....+..+..+  .++|+|+++ +++++.          .++.|.+||+.+.+.  
T Consensus        29 ~d~~v~v~D~~t----------~~~~~~i~~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--   93 (361)
T 2oiz_A           29 TESRVHVYDYTN----------GKFLGMVPTAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTF--   93 (361)
T ss_dssp             GGCEEEEEETTT----------CCEEEEEECCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCE--
T ss_pred             ccCeEEEEECCC----------CeEEEEecCCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcCCcE--
Confidence            378999999876          3444556655444  899999998 576665          367899999876533  


Q ss_pred             cccceeeeec------CCccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeee-eeccCCCeeEEEecCCCCe
Q 014433          216 SLEAMQIFKV------HEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       216 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~  287 (424)
                          +..+..      +......++++|+++.++++... ++.|.+||+.+.+.   +.. +. ... ...+.+.|.+..
T Consensus        94 ----~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~---~~~~i~-~~~-~~~v~~~p~~~~  164 (361)
T 2oiz_A           94 ----EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY---VEDVTA-AAG-CWSVIPQPNRPR  164 (361)
T ss_dssp             ----EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE---EEEEGG-GTT-EEEEEECTTSSS
T ss_pred             ----EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE---EEEEec-CCC-cceeEEcCCCCe
Confidence                222221      23456789999999988766544 78999999998653   333 22 111 122344454433


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcc-------------------------------------------------eEecCC--
Q 014433          288 ILATGSTDKTVKLFDLRKISTAL-------------------------------------------------HTFDSH--  316 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~-------------------------------------------------~~~~~h--  316 (424)
                      .+++.+.||.+.+|++...++..                                                 ..+...  
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            45555555555555543211111                                                 000000  


Q ss_pred             --------CCCEEEEEEcCCCCcEEEEEEC----------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          317 --------KEEVFQVGWNPKNETILASCCL----------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       317 --------~~~v~~~~~sp~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                              ......++|+|++..++++...          .+.|.+||+.+.              +.+..+..+.  +.
T Consensus       245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------------~~v~~i~~~~--p~  308 (361)
T 2oiz_A          245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------------QRVARIPGRD--AL  308 (361)
T ss_dssp             HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------------EEEEEEECTT--CC
T ss_pred             cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------------cEEEEEecCC--ee
Confidence                    0011126889988766655541          347999998875              5566666666  89


Q ss_pred             eEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          379 DFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +++|+|+++ +|++++. +.|.+||..++
T Consensus       309 ~ia~spdg~-~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          309 SMTIDQQRN-LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEEETTTT-EEEEECS-SCEEEEECSSS
T ss_pred             EEEECCCCC-EEEEeCC-CeEEEEECCCC
Confidence            999999999 5666666 99999999988

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1e-14  Score=145.55  Aligned_cols=251  Identities=7%  Similarity=-0.057  Sum_probs=150.4

Q ss_pred             EEEec--CCCCc-EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecCCCCceEEEEeCC-
Q 014433          130 RARYM--PQNPF-LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFKEGHLLSGSDD-  200 (424)
Q Consensus       130 ~~~~~--p~~~~-~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d-  200 (424)
                      ..+|+  |+++. ++++...+..|+++++....        ......+..     |...+.+++|+|+|+ .|++++.+ 
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g--------~~~~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~  151 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPG--------GAVPRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEF  151 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTT--------CCCCEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCC--------CCCCEeccCCccCCCCccccCcEECCCCC-EEEEEEecc
Confidence            44555  99986 44443345667777765000        011233444     566788999999998 67777766 


Q ss_pred             ---------CcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCC-------CeEEEEEcC-CCCC
Q 014433          201 ---------AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD-------QYLLIWDLR-TPSV  262 (424)
Q Consensus       201 ---------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d-------g~i~i~d~~-~~~~  262 (424)
                               ..|++||+.+..... ......+. .+...+..++|+|+++.++.+....       ..|++||+. ++..
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAAD-RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTC-GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             cCCCCCCceeEEEEEECCCCcccc-CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                     589999997620000 00112233 4556788999999998665343332       479999998 4421


Q ss_pred             CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCC--------EEEEEEcCCCCcE
Q 014433          263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEE--------VFQVGWNPKNETI  332 (424)
Q Consensus       263 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~~  332 (424)
                      .........+...+..++|+|+|+ +++++..++  .|.+||+.. ++.......+...        +..++|+|++. +
T Consensus       231 ~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~  307 (662)
T 3azo_A          231 ADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-I  307 (662)
T ss_dssp             EEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-E
T ss_pred             cccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCE-E
Confidence            011222234567899999999999 788888888  566666544 3332222222221        56789999885 7


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcE-EEEEeCCCc--EEEEecCCcc
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWV-ISSVAEDNI--LQIWQMAENI  408 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~dg~--i~vw~~~~~~  408 (424)
                      +++++. +.++||.+....             ..+..+..|...+..+ |++++..+ +++++.+..  |.+|++.++.
T Consensus       308 ~~~~~~-~~~~l~~~d~~~-------------~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          308 AVVHGK-GAAVLGILDPES-------------GELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEBS-SSCEEEEEETTT-------------TEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEc-CccEEEEEECCC-------------CcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            888888 999999543211             1234455666666666 13444434 444455544  5555665553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=1e-13  Score=139.99  Aligned_cols=204  Identities=9%  Similarity=0.056  Sum_probs=129.1

Q ss_pred             eEEEecCCCCcEEEEEeCC---------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          129 NRARYMPQNPFLIATKTVS---------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..++|||+++ .||.++.+         +.+.+||+.+        +.   ...+..|...+...+|||+|+ .||.++ 
T Consensus        65 ~~~~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~--------~~---~~~l~~~~~~~~~~~~SPdG~-~la~~~-  130 (740)
T 4a5s_A           65 NDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNK--------RQ---LITEERIPNNTQWVTWSPVGH-KLAYVW-  130 (740)
T ss_dssp             CEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTT--------TE---ECCSSCCCTTEEEEEECSSTT-CEEEEE-
T ss_pred             cceEECCCCC-EEEEEECCeeeEEEccceEEEEEECCC--------Cc---EEEcccCCCcceeeEECCCCC-EEEEEE-
Confidence            4588999997 56666654         6678999987        22   223556778899999999998 577764 


Q ss_pred             CCcEEEEeCCCCCCCCcccc----eeeeecCC---------ccEeeEEEecCCCcEEEEEeCCC----------------
Q 014433          200 DAQICLWDINAAPKNKSLEA----MQIFKVHE---------GVVEDVAWHLRHEYLFGSVGDDQ----------------  250 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~----~~~~~~~~---------~~v~~~~~~~~~~~~~~s~~~dg----------------  250 (424)
                      ++.|++|++.++... .+..    ...+.++.         +....+.|+|+|+.++.+...++                
T Consensus       131 ~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~  209 (740)
T 4a5s_A          131 NNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ  209 (740)
T ss_dssp             TTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred             CCeEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCC
Confidence            689999999876421 1100    00112222         12235899999986653322222                


Q ss_pred             -------------------eEEEEEcCC---CCCCCCeeeee------ccCCCeeEEEecCCCCeEEEEEe-C---CCcE
Q 014433          251 -------------------YLLIWDLRT---PSVSKPVQSVV------AHQSEVNCLAFNPFNEWILATGS-T---DKTV  298 (424)
Q Consensus       251 -------------------~i~i~d~~~---~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~l~tg~-~---dg~i  298 (424)
                                         .|++||+.+   +.... ...+.      .+...+..++|+|+++. ++... .   +..|
T Consensus       210 ~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i  287 (740)
T 4a5s_A          210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVM  287 (740)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEE
T ss_pred             CCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEE
Confidence                               578888887   53211 22332      26777999999999984 44433 2   2379


Q ss_pred             EEEECCCCCC------cceEe--cCCCCCEE-----EEEEcCCCCcEEEEEE-CCC--eEEEeeCCCC
Q 014433          299 KLFDLRKIST------ALHTF--DSHKEEVF-----QVGWNPKNETILASCC-LGR--RLMVWDLSRI  350 (424)
Q Consensus       299 ~iwd~~~~~~------~~~~~--~~h~~~v~-----~~~~sp~~~~~l~s~~-~dg--~i~iwd~~~~  350 (424)
                      .+||+.+ ++      .+..+  ..|...|.     ..+|+|+|+.+++..+ .+|  .|.+||+..+
T Consensus       288 ~~~d~~t-g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          288 DICDYDE-SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEEEEET-TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEEECCC-CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            9999987 33      12222  44555554     7899999986552554 444  4777787653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=1.1e-12  Score=117.93  Aligned_cols=245  Identities=9%  Similarity=0.067  Sum_probs=161.0

Q ss_pred             CCceeEEEecCCCCcEEEE-------EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-----cCCCceeEEEecCC-CC
Q 014433          125 DGEVNRARYMPQNPFLIAT-------KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-----GHSTEGYGLSWSKF-KE  191 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~lat-------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~-~~  191 (424)
                      -....+++|.+++. ++++       +..++.|.+|+..+        +  . ...+.     ++...+.+++++++ +.
T Consensus        17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~--------g--~-~~~~~~~~~~~~~~~~~~i~~~~~~g~   84 (314)
T 1pjx_A           17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKT--------G--K-KTVICKPEVNGYGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTT--------C--C-EEEEECCEETTEECCEEEEEECSSSSE
T ss_pred             CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCC--------C--c-EEEEEecccCCCCCCCceEEEecCCCc
Confidence            34667899998885 6666       56788999999765        1  1 12222     24467899999998 54


Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCC---------------CeEEEE
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD---------------QYLLIW  255 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d---------------g~i~i~  255 (424)
                        |..++..+.|.+||.. +... .+. ..... .....+.++++++++. ++++...+               +.|..|
T Consensus        85 --l~v~~~~~~l~~~d~~-g~~~-~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A           85 --LFVADMRLGLLVVQTD-GTFE-EIA-KKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             --EEEEETTTEEEEEETT-SCEE-ECC-SBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             --EEEEECCCCEEEEeCC-CCEE-EEE-eccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEE
Confidence              4444445578899987 4211 000 00000 1224588999999986 55555444               567777


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEec----CCCCeEEEEEeCCCcEEEEECCCCCC-----cceEecCCC-CCEEEEEE
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFN----PFNEWILATGSTDKTVKLFDLRKIST-----ALHTFDSHK-EEVFQVGW  325 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~----~~~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~~h~-~~v~~~~~  325 (424)
                      |.. +.    +..+..+......++|+    |+++.++++...++.|.+||+...+.     ....+..+. ..+..+++
T Consensus       159 ~~~-g~----~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          159 TTD-GQ----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             CTT-SC----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             CCC-CC----EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            764 32    22332334457889999    98876666666788999999862122     223334443 56889999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ++++. ++++...++.|.+||..++.              .+..+..+...+.+++|+|++..++++...++.|..|++.
T Consensus       234 d~~G~-l~v~~~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          234 DEDNN-LLVANWGSSHIEVFGPDGGQ--------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BTTCC-EEEEEETTTEEEEECTTCBS--------------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCC-EEEEEcCCCEEEEEcCCCCc--------------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            99985 77777778899999987432              2233344556789999999998666776677899999987


Q ss_pred             Cc
Q 014433          406 EN  407 (424)
Q Consensus       406 ~~  407 (424)
                      ..
T Consensus       299 ~~  300 (314)
T 1pjx_A          299 RN  300 (314)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.7e-13  Score=123.84  Aligned_cols=224  Identities=14%  Similarity=0.166  Sum_probs=141.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCC---C--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-
Q 014433          126 GEVNRARYMPQNPFLIATKTVS---A--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-  199 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~d---g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-  199 (424)
                      ..+..++|+|+|+. ||..+.+   +  .|++|++..          .. ...+..+.. +..++|+|++. .|+.++. 
T Consensus        59 ~~~~~~~~SpDg~~-la~~~~~~~~~~~~l~~~~~~~----------g~-~~~l~~~~~-~~~~~wspdg~-~l~~~~~~  124 (347)
T 2gop_A           59 ENATMPRISPDGKK-IAFMRANEEKKVSEIWVADLET----------LS-SKKILEAKN-IRSLEWNEDSR-KLLIVGFK  124 (347)
T ss_dssp             ESCEEEEECTTSSE-EEEEEEETTTTEEEEEEEETTT----------TE-EEEEEEESE-EEEEEECTTSS-EEEEEEEC
T ss_pred             ccCCCeEECCCCCE-EEEEEeccCCCcceEEEEECCC----------Cc-eEEEEcCCC-ccceeECCCCC-EEEEEEcc
Confidence            56888999999984 5544432   3  477777765          12 223333334 89999999998 4665543 


Q ss_pred             --------------------------CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC---
Q 014433          200 --------------------------DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---  250 (424)
Q Consensus       200 --------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg---  250 (424)
                                                ...|.+||+.++.      .+..+.. . .+..++|+|++  +++++..++   
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~------~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~  194 (347)
T 2gop_A          125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE------VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP  194 (347)
T ss_dssp             CCC---------CCCC---------CEEEEEEEETTTTE------EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC
T ss_pred             CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe------EEeeecC-C-CcccccCCCCe--EEEEEecccccc
Confidence                                      2568899987652      1122332 3 78899999998  555555432   


Q ss_pred             ----eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-------CcEEEEECCCCCCcceEecCCCCC
Q 014433          251 ----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-------KTVKLFDLRKISTALHTFDSHKEE  319 (424)
Q Consensus       251 ----~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-------g~i~iwd~~~~~~~~~~~~~h~~~  319 (424)
                          ...||.+.++.    ...+..+ ..+..+  +|+|+.+++.+..+       ..|.+||  + ++.......+...
T Consensus       195 ~~~~~~~l~~~d~~~----~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~  264 (347)
T 2gop_A          195 QYFKFWDIYIWEDGK----EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG  264 (347)
T ss_dssp             CSSCCEEEEEEETTE----EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE
T ss_pred             cccccccEEEeCCCc----eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc
Confidence                34555444322    3333334 445444  89998644444332       4688888  3 4444444556678


Q ss_pred             EEE-EEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433          320 VFQ-VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI  398 (424)
Q Consensus       320 v~~-~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  398 (424)
                      +.. +.|+ ++  ++++++.++.++|| +..+              .... +..+...|.+++|+|  . ++++++.++.
T Consensus       265 ~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g--------------~~~~-~~~~~~~v~~~~~s~--~-~~~~~~~~~~  322 (347)
T 2gop_A          265 VGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG--------------EIKP-IAKGRHWIMGFDVDE--I-VVYLKETATR  322 (347)
T ss_dssp             EEEEEEET-TE--EEEEEEETTEEEEE-EESS--------------SEEE-EECSSSEEEEEEESS--S-EEEEEECSSS
T ss_pred             cCCccEEc-Cc--EEEEEecCCcEEEE-EcCC--------------ceEE-EecCCCeEEeeeeeC--c-EEEEEcCCCC
Confidence            886 9999 76  78899999999999 8632              1122 223466789999999  4 6777776666


Q ss_pred             E-EEEecC
Q 014433          399 L-QIWQMA  405 (424)
Q Consensus       399 i-~vw~~~  405 (424)
                      . .||.+.
T Consensus       323 ~~~l~~~~  330 (347)
T 2gop_A          323 LRELFTWD  330 (347)
T ss_dssp             CCEEEEES
T ss_pred             hHHheEeC
Confidence            5 788775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=9.2e-14  Score=129.25  Aligned_cols=232  Identities=7%  Similarity=-0.006  Sum_probs=143.0

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeE-------------------EEecCCC
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-------------------LSWSKFK  190 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~  190 (424)
                      .+.|+|+++ .|+.++.++.|++|++..          .........+......                   +.|+|++
T Consensus        85 ~~~~spdg~-~l~~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg  153 (396)
T 3c5m_A           85 GGFISTDER-AFFYVKNELNLMKVDLET----------LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT  153 (396)
T ss_dssp             TCEECTTSS-EEEEEETTTEEEEEETTT----------CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             cceECCCCC-EEEEEEcCCcEEEEECCC----------CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC
Confidence            478999997 677778888999999876          1222222223322222                   4577777


Q ss_pred             CceEEEE-----eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec-CCCcEEEEEeCC------CeEEEEEcC
Q 014433          191 EGHLLSG-----SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGDD------QYLLIWDLR  258 (424)
Q Consensus       191 ~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~s~~~d------g~i~i~d~~  258 (424)
                      .. ++.+     ..+..|.+||+.++..       ..+..+...+..+.|+| ++..++ .++.+      ..|.+||+.
T Consensus       154 ~~-~~~~~~~~~~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~-~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          154 SW-EKFAEFYHTNPTCRLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVG-FCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             SH-HHHHHHHHTCCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEE-EEECSCSSSCSCCCEEEETT
T ss_pred             cc-eeeeeeccCCCcceEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEE-EEecCCCCCCCceEEEEECC
Confidence            63 4433     4567899999976531       12224567789999999 666454 33333      468888887


Q ss_pred             CCCCCCCeeeeecc--CCCeeEEEecCCCCeEEEEEeCC----CcEEEEECCCCCCcceEecCCCCCEEEEEEcC-CCCc
Q 014433          259 TPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGSTD----KTVKLFDLRKISTALHTFDSHKEEVFQVGWNP-KNET  331 (424)
Q Consensus       259 ~~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~  331 (424)
                      .+..    ..+..+  ...+..++|+|+++.+++++..+    +.|++||+.+ ++....... . ... +.|+| ++. 
T Consensus       225 ~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~-~-~~~-~~~s~~dg~-  295 (396)
T 3c5m_A          225 GSNV----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEEVMVM-P-PCS-HLMSNFDGS-  295 (396)
T ss_dssp             SCCC----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEEEEEC-C-SEE-EEEECSSSS-
T ss_pred             CCce----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEEeeeC-C-CCC-CCccCCCCc-
Confidence            6442    222222  23578899999998644443332    3499999986 333222211 1 233 89999 997 


Q ss_pred             EEEEEE----------------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC-----------CcceEEeCC
Q 014433          332 ILASCC----------------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS-----------KISDFSWNP  384 (424)
Q Consensus       332 ~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~  384 (424)
                      ++++++                .+..|.+||+..+..            ..+   ..+..           .+..++|+|
T Consensus       296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~~~~~~~~~~~~~~~~~~~~~s~  360 (396)
T 3c5m_A          296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA------------QKL---CKHSTSWDVLDGDRQITHPHPSFTP  360 (396)
T ss_dssp             EEEEEECCC----------CCCCCCEEEEEETTTTBC------------CEE---EECCCCCCCBTTBSSTTCCCCEECT
T ss_pred             eEEEecCCcceeeccccccccCCCCcEEEEecccCce------------EEc---cCCCCccccccccccCCCCCceEcc
Confidence            566544                346899999876431            111   22222           256789999


Q ss_pred             CCCcEEEEEeCCCcEEEEecC
Q 014433          385 CEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      +++++++++..++...||.+.
T Consensus       361 dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          361 NDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCeEEEEecCCCCceEEEEE
Confidence            999666665566766666653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=1.8e-13  Score=124.39  Aligned_cols=247  Identities=9%  Similarity=0.052  Sum_probs=163.7

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...|.+++|+++.. .++..+.++.++.|.-             .....+..+...+.+++|++++. +++++..++.|.
T Consensus         5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~   69 (333)
T 2dg1_A            5 QQDLPTLFYSGKSN-SAVPIISESELQTITA-------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIF   69 (333)
T ss_dssp             -CCCCBCCSCGGGG-CSSCCCCGGGSCEEEC-------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEE
T ss_pred             ccccceeeecCCcc-ceeEEeecccCccccc-------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCEEE
Confidence            34578889999765 4555567888888832             22455667777789999999887 677888899999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----CeEEEEEcCCCCCCCCeeeee--ccCCCeeE
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----QYLLIWDLRTPSVSKPVQSVV--AHQSEVNC  278 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~i~d~~~~~~~~~~~~~~--~~~~~v~~  278 (424)
                      +||..++..      ......+...+.++++++++. ++++...+    +.|.+||..++..   ...+.  .+...+..
T Consensus        70 ~~d~~~~~~------~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~  139 (333)
T 2dg1_A           70 KINPETKEI------KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL---QDIIEDLSTAYCIDD  139 (333)
T ss_dssp             EECTTTCCE------EEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC---EEEECSSSSCCCEEE
T ss_pred             EEeCCCCcE------EEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEE---EEEEccCccCCcccc
Confidence            999876531      111223567899999999986 66566555    6899999887653   11111  23457899


Q ss_pred             EEecCCCCeEEEEEeC------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          279 LAFNPFNEWILATGST------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ++++|++. ++++...      .+.|..+|... + .+..+..+...+..++|+|++..++++.+.++.|.+|++.....
T Consensus       140 i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~  216 (333)
T 2dg1_A          140 MVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-R-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV  216 (333)
T ss_dssp             EEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-C-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred             eEECCCCC-EEEEeccccccCCCceEEEEeCCC-C-EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence            99999987 5555543      24566666543 2 23333333446789999999975566666788999999864211


Q ss_pred             -ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          353 -EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       353 -~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       .....      ........++ ..+..+++++++. ++++...++.|.+|+....
T Consensus       217 ~~~~~~------~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          217 TIQPFG------ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             SEEEEE------EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC
T ss_pred             Cccccc------ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCC
Confidence             00000      0111122222 3577899999998 6777777889999998644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=1.6e-13  Score=137.55  Aligned_cols=251  Identities=8%  Similarity=-0.086  Sum_probs=159.6

Q ss_pred             cCCceeEEEecCCCCcEEEE----EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          124 HDGEVNRARYMPQNPFLIAT----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~lat----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      |...+..++|||+|+.++.+    |+.+..|++||+.+.        .......+..  .....++|+|+++ .|+.++.
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg--------~~~~~~~~~~--~~~~~~~wspDg~-~l~~~~~  187 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG--------EWSKVDVIEG--GKYATPKWTPDSK-GFYYEWL  187 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC--------CBCSSCCBSC--CTTCCCEECTTSS-EEEEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC--------CCcCCcccCc--ccccceEEecCCC-EEEEEEe
Confidence            44568899999999844333    333468999999872        1110001111  1126899999998 5777777


Q ss_pred             CCc-------------EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-C--eEEEEEcCCCCCC
Q 014433          200 DAQ-------------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-Q--YLLIWDLRTPSVS  263 (424)
Q Consensus       200 dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g--~i~i~d~~~~~~~  263 (424)
                      |..             |++|++.++....  ..+.....+...+..+.|+|+++.++++...+ +  .|.++|..++.  
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--  263 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--  263 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--
Confidence            765             9999998764211  11222233556788999999998876555443 3  56666544332  


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCCC-cceEecCC--CCCEEEEEEcCCCCcEEEEEE
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKIST-ALHTFDSH--KEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~~-~~~~~~~h--~~~v~~~~~sp~~~~~l~s~~  337 (424)
                        ...+..+...+....+ +++. +++.+.   .++.|.+||+.+... ....+..+  ...+..++|+ ++ .++++..
T Consensus       264 --~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~  337 (695)
T 2bkl_A          264 --FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYL  337 (695)
T ss_dssp             --CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEE
T ss_pred             --eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEE
Confidence              3444455556666666 5666 666655   357899999976321 12333333  4467888998 44 5888999


Q ss_pred             CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCcc
Q 014433          338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENI  408 (424)
Q Consensus       338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~---~dg~i~vw~~~~~~  408 (424)
                      .|+..+||.+....             .....+..+ ...+..++++|+++.++++.+   ..+.|++||+.++.
T Consensus       338 ~dg~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          338 KDATSEVRVATLKG-------------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTEEEEEEEETTC-------------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ECCEEEEEEEeCCC-------------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            99998888765211             122333333 556788899999885555544   34689999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=1.5e-12  Score=119.66  Aligned_cols=222  Identities=11%  Similarity=0.065  Sum_probs=137.4

Q ss_pred             EEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------CCCceeEEEecCCCCceE
Q 014433          130 RARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------HSTEGYGLSWSKFKEGHL  194 (424)
Q Consensus       130 ~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l  194 (424)
                      .++|+|+++.+.++..         .++.|.+||..+          .+....+..      +......++++|+++ +|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t----------~~~~~~i~~~~~~~~~g~~p~~i~~spdg~-~l  122 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK----------LTFEKEISLPPKRVQGLNYDGLFRQTTDGK-FI  122 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT----------CCEEEEEEECTTBCCBCCCGGGEEECTTSS-EE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC----------CcEEEEEEcCccccccCCCcceEEECCCCC-EE
Confidence            8999999985444432         367899999876          344444442      234567899999998 56


Q ss_pred             EEEeC--CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE-----------------
Q 014433          195 LSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW-----------------  255 (424)
Q Consensus       195 ~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~-----------------  255 (424)
                      +++..  +++|.+||+.+.+....+     +. .. ....+.+.|.+...+++.+.||.+.+|                 
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~~~~-----i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~  195 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYVEDV-----TA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM  195 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEEEEE-----GG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred             EEECCCCCCeEEEEECCCCcEEEEE-----ec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence            66653  689999999876332210     11 11 111123334333333344444444444                 


Q ss_pred             -------------------------------EcCCCCCCCCeeeeec------c----CCCeeEEEecCCCCeEEEEEeC
Q 014433          256 -------------------------------DLRTPSVSKPVQSVVA------H----QSEVNCLAFNPFNEWILATGST  294 (424)
Q Consensus       256 -------------------------------d~~~~~~~~~~~~~~~------~----~~~v~~v~~~~~~~~~l~tg~~  294 (424)
                                                     |+..... ..+..+..      +    ......++|+|++..++++...
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          196 FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence                                           4432211 00000000      0    0111226889998876665541


Q ss_pred             ----------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCC
Q 014433          295 ----------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP  364 (424)
Q Consensus       295 ----------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  364 (424)
                                .+.|.+||+.+ .+.+.++..+.  +.+++|+|+++ +|++++. +.|.+||..++..            
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l------------  337 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEP------------  337 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSSC------------
T ss_pred             CCCcccccCCCceEEEEECCC-CcEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcc------------
Confidence                      34899999998 67888888776  99999999997 5666666 9999999987521            


Q ss_pred             eeeEEEcCCCCCcceEEeCCCCC
Q 014433          365 ELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       365 ~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      +++..+..+......++++|+|.
T Consensus       338 ~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          338 KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEETTSCSSEEEEEECCCSC
T ss_pred             eeeEEeccCCCCcEEEEecCCCC
Confidence            44555555566678899999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.57  E-value=1.4e-12  Score=118.26  Aligned_cols=201  Identities=10%  Similarity=0.093  Sum_probs=146.5

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---------ecCCCceeEEEecC-CCCce
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---------RGHSTEGYGLSWSK-FKEGH  193 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~~-~~~~~  193 (424)
                      +-..+..++++|++. ++++...++.|++|+....         ......+         .++-....+|+++| ++. +
T Consensus        89 ~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~---------~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-l  157 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSK---------EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-V  157 (329)
T ss_dssp             TCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCS---------SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-E
T ss_pred             ccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCC---------eEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-E
Confidence            445789999999887 8888888999999998651         1123333         23445689999999 555 6


Q ss_pred             EEEEe-CCCcEEEEeCCCCCCCCcccceeeeec----------CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433          194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKV----------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       194 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      +++.+ .++.|++|+.. +.      .+..+..          +-.....|+++|++..++++...++.|++||..+++.
T Consensus       158 yv~d~~~~~~I~~~~~~-g~------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~  230 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPS-GK------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF  230 (329)
T ss_dssp             EEEECSSCCEEEEECTT-SC------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEeCCCCCeEEEEcCC-CC------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE
Confidence            66665 68999999953 21      1222211          2234789999999667888888999999999986553


Q ss_pred             CCCeeee--eccCCCeeEEEecCCCCeEEEEEe-------CCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCC
Q 014433          263 SKPVQSV--VAHQSEVNCLAFNPFNEWILATGS-------TDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNE  330 (424)
Q Consensus       263 ~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~-------~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~  330 (424)
                         +..+  ..+...+.+++|+| +- ++++.+       .+..|++||+.+ ++.+..+.   .+...+..++++|+| 
T Consensus       231 ---~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG-  303 (329)
T 3fvz_A          231 ---VREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDG-  303 (329)
T ss_dssp             ---EEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTS-
T ss_pred             ---EEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCC-
Confidence               3443  34566788999999 32 344333       345899999987 67777763   566789999999999 


Q ss_pred             cEEEEEECCCeEEEeeCCC
Q 014433          331 TILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~  349 (424)
                      .++++...++.|++|++..
T Consensus       304 ~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          304 TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEESSSCCEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCc
Confidence            6888988999999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=8.1e-12  Score=120.86  Aligned_cols=269  Identities=8%  Similarity=0.045  Sum_probs=176.3

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEec----CCCCce
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS----KFKEGH  193 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~  193 (424)
                      ++.++.....+..++|+|+++ ++.+++.++.|.+||+..        ...+....+.. ......++|+    |+|+.+
T Consensus       189 v~~~i~~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~--------~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l  258 (567)
T 1qks_A          189 IKTVLDTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWM--------KEPTTVAEIKI-GSEARSIETSKMEGWEDKYA  258 (567)
T ss_dssp             EEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS--------SSCCEEEEEEC-CSEEEEEEECCSTTCTTTEE
T ss_pred             EEEEEeCCCCccceEECCCCC-EEEEEcCCCeEEEEECCC--------CCCcEeEEEec-CCCCceeEEccccCCCCCEE
Confidence            344556666778999999997 566677899999999951        01344455553 3356799999    688854


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceee-e---ecCCc-cEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQI-F---KVHEG-VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~~~~-~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                      +++...++.|.++|..+.+....+..... .   ..|.. .+..+..+++++.+++....+|.|.++|....... .+..
T Consensus       259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v~~  337 (567)
T 1qks_A          259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-KTTE  337 (567)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-EEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-eeee
Confidence            55555679999999876543222211000 0   01222 67888889988878878888899999999775421 1222


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC-----CCCCEEEEEEcCCCCcEEEEEE-CCCeE
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-----HKEEVFQVGWNPKNETILASCC-LGRRL  342 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-----h~~~v~~~~~sp~~~~~l~s~~-~dg~i  342 (424)
                      + ........+.|+|++++++++...++.|.++|+.+ ++.+..+..     |.+.-..+ ++|++..+++++. .++.|
T Consensus       338 i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~V  414 (567)
T 1qks_A          338 I-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSV  414 (567)
T ss_dssp             E-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred             e-eccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeE
Confidence            2 23456778999999998777777789999999998 555554443     33222222 5887555666664 46899


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC------CCcEEEEecCCc
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE------DNILQIWQMAEN  407 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------dg~i~vw~~~~~  407 (424)
                      .++|........       ...+.+..+......-..+..+|+++++.++...      .+.|.|+|+.+.
T Consensus       415 svid~~~~~~~~-------~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          415 ALIGTDPEGHPD-------NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEECCTTTCTT-------TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EEecCCCCCCcc-------ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            999987632110       0124455555443334568899999976655421      458999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=1.4e-11  Score=109.64  Aligned_cols=242  Identities=6%  Similarity=-0.040  Sum_probs=163.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .+...+.++++.+++. +.++...++.|.+|+...          ......+..+...+.++++.+++. ++++...++.
T Consensus        12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~~----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~   79 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLDG----------KITEYPLPTPDAKVMCLTISSDGE-VWFTENAANK   79 (299)
T ss_dssp             SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTTC----------CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTE
T ss_pred             CcCCCccceEECCCCC-EEEEecCCCcEEEEcCCC----------CeEEecCCcccCceeeEEECCCCC-EEEeCCCCCe
Confidence            3456889999999886 566555578999999763          110111123456789999999876 5666666888


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      |..|+....     +... ........+..+++.+++. ++++...++.|.+||. ++..  ...........+..++++
T Consensus        80 i~~~~~~g~-----~~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           80 IGRITKKGI-----IKEY-TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKI--REYELPNKGSYPSFITLG  149 (299)
T ss_dssp             EEEECTTSC-----EEEE-ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEEC
T ss_pred             EEEECCCCc-----EEEE-eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCE--EEecCCCCCCCCceEEEc
Confidence            999997521     1111 1112345788999999875 6666667889999998 4331  111122244578999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceE-ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +++. ++++...++.|..||. + +..... ...+...+.++++++++. ++++...++.|.+||. .+.          
T Consensus       150 ~~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~----------  214 (299)
T 2z2n_A          150 SDNA-LWFTENQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGE----------  214 (299)
T ss_dssp             TTSC-EEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCC----------
T ss_pred             CCCC-EEEEeCCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCc----------
Confidence            9886 6666666789999998 4 333222 333456788999999985 6666666788999998 432          


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                         ........+...+.++++++++. ++++...++.|.+|+..
T Consensus       215 ---~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          215 ---ITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             ---EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT
T ss_pred             ---EEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC
Confidence               11122233455688999999998 67776677889999984

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=2.2e-12  Score=117.00  Aligned_cols=237  Identities=12%  Similarity=0.053  Sum_probs=158.7

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      ....+.+..  ..++++...++.|.+||..+          .+...++. .......+++++++. ++++...++.|.+|
T Consensus        45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~~t----------~~~~~~i~-~~~~p~~i~~~~~g~-lyv~~~~~~~v~~i  110 (328)
T 3dsm_A           45 VAQSMVIRD--GIGWIVVNNSHVIFAIDINT----------FKEVGRIT-GFTSPRYIHFLSDEK-AYVTQIWDYRIFII  110 (328)
T ss_dssp             CEEEEEEET--TEEEEEEGGGTEEEEEETTT----------CCEEEEEE-CCSSEEEEEEEETTE-EEEEEBSCSEEEEE
T ss_pred             cceEEEEEC--CEEEEEEcCCCEEEEEECcc----------cEEEEEcC-CCCCCcEEEEeCCCe-EEEEECCCCeEEEE
Confidence            345677643  34677777789999999987          34445554 456788999988773 44444478999999


Q ss_pred             eCCCCCCCCcccceeeeecCC-----ccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          207 DINAAPKNKSLEAMQIFKVHE-----GVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      |+.+.+.      ...+....     .....+++  ++..++++.. .++.|.++|+.+++.   +..+.. ......++
T Consensus       111 D~~t~~~------~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~---~~~i~~-g~~p~~i~  178 (328)
T 3dsm_A          111 NPKTYEI------TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV---VDELTI-GIQPTSLV  178 (328)
T ss_dssp             ETTTTEE------EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE---EEEEEC-SSCBCCCE
T ss_pred             ECCCCeE------EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE---EEEEEc-CCCccceE
Confidence            9987632      22222111     15567777  3556776655 489999999998663   333332 33467889


Q ss_pred             ecCCCCeEEEEEeCC----------CcEEEEECCCCCCcceEecCC-CCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          281 FNPFNEWILATGSTD----------KTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       281 ~~~~~~~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ++|+|+ +++++..+          +.|.++|..+ .+....+... ......++|+|+++. |+++..  .|.+||..+
T Consensus       179 ~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          179 MDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEA  253 (328)
T ss_dssp             ECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTC
T ss_pred             EcCCCC-EEEEECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCC
Confidence            999887 56555444          7899999987 5555555432 346899999999875 444433  799999976


Q ss_pred             CCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE----eCCCcEEEEecCC
Q 014433          350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV----AEDNILQIWQMAE  406 (424)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~dg~i~vw~~~~  406 (424)
                      +.....         ..   ...+......++++|++..++++.    ..++.|.+|+...
T Consensus       254 ~~~~~~---------~~---~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          254 DRVPVR---------PF---LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             SSCCSS---------CS---BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             Cceeee---------ee---ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            542110         00   011134578899999655578887    6789999999983

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.54  E-value=2.6e-12  Score=114.01  Aligned_cols=206  Identities=16%  Similarity=0.140  Sum_probs=141.7

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIW  255 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~  255 (424)
                      +-..+.++++++++. ++++...++.|.+||.... ....+........+...+..+++.+.+..++++... ++.|.+|
T Consensus        28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCC-EEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            445688999999886 7777788999999998632 111110000001234578899995434456656543 8899999


Q ss_pred             EcCCCCCCCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcE
Q 014433          256 DLRTPSVSKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       256 d~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~  332 (424)
                      |. ++..   +..+. .+...+..++++|++. ++++...++.|.+||..  +..+..+.  .+...+..++++|++. +
T Consensus       106 d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~-l  177 (286)
T 1q7f_A          106 NQ-YGQF---VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQE-I  177 (286)
T ss_dssp             CT-TSCE---EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSE-E
T ss_pred             CC-CCcE---EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCC-E
Confidence            94 4332   33332 2345789999999987 77777778999999965  34455553  3445789999999985 7


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC--CCCCcceEEeCCCCCcEEEEEeCCC-cEEEEecCCcc
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--HTSKISDFSWNPCEDWVISSVAEDN-ILQIWQMAENI  408 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg-~i~vw~~~~~~  408 (424)
                      +++...++.|++||...               ..+..+..  +...+..+++++++. ++++...++ .|.+|+.....
T Consensus       178 ~v~~~~~~~i~~~~~~g---------------~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~  240 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQL  240 (286)
T ss_dssp             EEEEGGGTEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCE
T ss_pred             EEEECCCCEEEEEcCCC---------------CEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCE
Confidence            77777889999999753               23333432  235688999999998 788877775 99999976543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.53  E-value=1.6e-12  Score=118.66  Aligned_cols=224  Identities=9%  Similarity=0.098  Sum_probs=138.2

Q ss_pred             CceeEEEecCCCCcEEEEE--------eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          126 GEVNRARYMPQNPFLIATK--------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg--------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ..+..+++  +|+.++.+.        ..++.|++|++..          .. ...+    ..+..++|+|+|. .|+.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----------~~-~~~l----~~~~~~~~SpDg~-~la~~   76 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN----------NA-RRFI----ENATMPRISPDGK-KIAFM   76 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT----------CC-EEEE----ESCEEEEECTTSS-EEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC----------Cc-eEEc----ccCCCeEECCCCC-EEEEE
Confidence            45566677  676444432        2256899999876          11 2233    4578899999998 56665


Q ss_pred             eCC---C--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC------------------------
Q 014433          198 SDD---A--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD------------------------  248 (424)
Q Consensus       198 ~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~------------------------  248 (424)
                      +.+   +  .|.+|++.++.      ... +..+.. +..++|+|+++.++.+...                        
T Consensus        77 ~~~~~~~~~~l~~~~~~~g~------~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  148 (347)
T 2gop_A           77 RANEEKKVSEIWVADLETLS------SKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD  148 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTE------EEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred             EeccCCCcceEEEEECCCCc------eEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence            543   3  37777886542      112 222334 9999999999876654432                        


Q ss_pred             --CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-------cEEEEECCCCCCcceEecCCCCC
Q 014433          249 --DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-------TVKLFDLRKISTALHTFDSHKEE  319 (424)
Q Consensus       249 --dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-------~i~iwd~~~~~~~~~~~~~h~~~  319 (424)
                        ...|.+||+.++..   +..+.. . .+..++|+|++  +++++..++       ...||.+.+ +. ...+..+ ..
T Consensus       149 ~~~~~l~~~d~~~~~~---~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~  218 (347)
T 2gop_A          149 GEKTTFWIFDTESEEV---IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VS  218 (347)
T ss_dssp             -CEEEEEEEETTTTEE---EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ES
T ss_pred             CccceEEEEECCCCeE---EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cc
Confidence              25789999987652   133333 3 78899999998  566665542       344444443 33 3333334 45


Q ss_pred             EEEEEEcCCCCcEEEEEECC-------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce-EEeCCCCCcEEE
Q 014433          320 VFQVGWNPKNETILASCCLG-------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD-FSWNPCEDWVIS  391 (424)
Q Consensus       320 v~~~~~sp~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~  391 (424)
                      +..+  +|+|+.+++++..+       ..|.+||  .+              .......+|...+.. +.|+ ++  +++
T Consensus       219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--------------~~~~l~~~~~~~~~~~~~~s-dg--~~~  277 (347)
T 2gop_A          219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--------------EVMGILDEVDRGVGQAKIKD-GK--VYF  277 (347)
T ss_dssp             EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------CEEESSTTCCSEEEEEEEET-TE--EEE
T ss_pred             eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------ceEeccccCCcccCCccEEc-Cc--EEE
Confidence            5544  99997544444332       4677887  32              112222345556776 8999 76  788


Q ss_pred             EEeCCCcEEEEecCCc
Q 014433          392 SVAEDNILQIWQMAEN  407 (424)
Q Consensus       392 s~~~dg~i~vw~~~~~  407 (424)
                      +++.++.++|| +.++
T Consensus       278 ~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             EEEETTEEEEE-EESS
T ss_pred             EEecCCcEEEE-EcCC
Confidence            88999999999 8743

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=2.9e-11  Score=116.96  Aligned_cols=230  Identities=13%  Similarity=0.082  Sum_probs=162.0

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC--CCCCCCc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN--AAPKNKS  216 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~  216 (424)
                      .++++...++.|.++|..+          .+.+..+. ....+..+.++|++. ++++++.|+.|.+||+.  +.+    
T Consensus       168 ~~~V~~~~~~~V~viD~~t----------~~v~~~i~-~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~----  231 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST----------YEIKTVLD-TGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPT----  231 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT----------CCEEEEEE-CSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCC----
T ss_pred             eEEEEeCCCCeEEEEECCC----------CeEEEEEe-CCCCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCc----
Confidence            4677778889999999987          34444554 344577999999998 68888999999999995  332    


Q ss_pred             ccceeeeecCCccEeeEEEe----cCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----------c-CCCeeEEEe
Q 014433          217 LEAMQIFKVHEGVVEDVAWH----LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------H-QSEVNCLAF  281 (424)
Q Consensus       217 ~~~~~~~~~~~~~v~~~~~~----~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------~-~~~v~~v~~  281 (424)
                        .+..+.. ......++|+    |+++.++++...++.|.++|..+.+.   +..+..          | ...+..+..
T Consensus       232 --~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~---~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          232 --TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             --EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             --EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE---EEEEeccccccccccccCCCceEEEEE
Confidence              2333332 3346799999    69999988888889999999888553   433321          1 225778888


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      ++++..++++...+|.|.++|....................+.|+|+++++++++..++.|.++|+.++.          
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----------  375 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----------  375 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----------
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----------
Confidence            9988877777777899999999864322211222345677899999998777777778999999998753          


Q ss_pred             CCCeeeEEEc-----CCCCCcceEE-eCCCCCcEEEEEe-CCCcEEEEecCC
Q 014433          362 GPPELLFIHG-----GHTSKISDFS-WNPCEDWVISSVA-EDNILQIWQMAE  406 (424)
Q Consensus       362 ~~~~~~~~~~-----~h~~~v~~~~-~~~~~~~~l~s~~-~dg~i~vw~~~~  406 (424)
                          ++....     .|.+  ..+. ++|++..+++++. .++.|.+++..+
T Consensus       376 ----l~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          376 ----LVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             ----EEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ----EEEEEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                222222     1322  2333 5787554666654 468999999876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=2.5e-11  Score=108.37  Aligned_cols=233  Identities=10%  Similarity=0.053  Sum_probs=155.9

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      .-..+..|+|++..++++....+.|+.|+...          .. ...+ .....+.++++++++. +++ +. ++.|.+
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------~~-~~~~-~~~~~~~~i~~~~dG~-l~v-~~-~~~l~~   77 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------KQ-VQRV-TMDAPVSSVALRQSGG-YVA-TI-GTKFCA   77 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTT----------CC-EEEE-ECSSCEEEEEEBTTSS-EEE-EE-TTEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCC----------Cc-EEEE-eCCCceEEEEECCCCC-EEE-EE-CCeEEE
Confidence            34568899997777888888889999999876          11 2222 3456799999999887 444 44 568999


Q ss_pred             EeCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeC---------CCeEEEEEcCCCCCCCCeeeeeccCC
Q 014433          206 WDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVAHQS  274 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~  274 (424)
                      ||..++..    ..+....  .....+++++++|++. ++++...         ...-.||.+.....   +..+.....
T Consensus        78 ~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~~  149 (297)
T 3g4e_A           78 LNWKEQSA----VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQVD  149 (297)
T ss_dssp             EETTTTEE----EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEES
T ss_pred             EECCCCcE----EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC---EEEEeeccc
Confidence            99876521    1111111  1234688999999987 4444322         12334555543221   333333445


Q ss_pred             CeeEEEecCCCCeEEEEEeCCCcEEEEECC-CCCCc-----ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          275 EVNCLAFNPFNEWILATGSTDKTVKLFDLR-KISTA-----LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       275 ~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~-----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      ..+.++|+|+++.++++.+.++.|.+||+. ..+..     +..+..+......++++++|. +.++...++.|.+||..
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTT
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCC
Confidence            678999999998777777778999999974 21221     222333345788999999994 77777778899999987


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCC
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAED  396 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d  396 (424)
                      ++              +++..+..+...+++++|. |+++.|+++...+
T Consensus       229 tG--------------~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          229 TG--------------KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TC--------------CEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             Cc--------------eEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            54              4455556666679999998 8888677776644

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=8e-11  Score=104.75  Aligned_cols=242  Identities=4%  Similarity=-0.055  Sum_probs=158.6

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +...+.++++.+++. +.++...++.|..|+...          ......+......+.++++.+++. ++++...++.|
T Consensus        55 ~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i  122 (299)
T 2z2n_A           55 PDAKVMCLTISSDGE-VWFTENAANKIGRITKKG----------IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRI  122 (299)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTTS----------CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred             ccCceeeEEECCCCC-EEEeCCCCCeEEEECCCC----------cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceE
Confidence            446788999999886 666656678899998753          111111222455788999999776 66666668899


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ..||. ++..    .. .........+..+++.+++. ++++...++.|..||. ++.. . ..........+..+++++
T Consensus       123 ~~~d~-~g~~----~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          123 GRITD-DGKI----RE-YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDI-T-EFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             EEECT-TCCE----EE-EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECT
T ss_pred             EEECC-CCCE----EE-ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcE-E-EeeCCCCCCcceeEEECC
Confidence            99998 3321    11 11122345689999999885 6666666789999998 5432 0 111223345688999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      ++. ++++...++.|.+||. + +.... ....+...+.++++++++. ++++...++.|.+||.. +.           
T Consensus       193 ~g~-l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~-----------  256 (299)
T 2z2n_A          193 DDA-LWFVEIIGNKIGRITT-S-GEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN-NI-----------  256 (299)
T ss_dssp             TSS-EEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT-TE-----------
T ss_pred             CCC-EEEEccCCceEEEECC-C-CcEEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC-Cc-----------
Confidence            887 6666666789999998 4 33222 2233456799999999985 66666577889999983 21           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                        ........+...+.++++ +++. ++++.. .+.+..+++.++.
T Consensus       257 --~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          257 --IEEYPIQIKSAEPHGICF-DGET-IWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             --EEEEECSSSSCCEEEEEE-CSSC-EEEEET-TTEEEEEEEC---
T ss_pred             --eEEEeCCCCCCccceEEe-cCCC-EEEEec-CCcEEEEEcCccc
Confidence              111222344556889999 8888 566654 5678888877654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=2.7e-11  Score=113.03  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=160.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QI  203 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i  203 (424)
                      .....|+|+|++. ++++...++.|++||...          .. ...+........ ++|++++. .|+++..++  .|
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~----------g~-~~~~~~~~~~~~-ia~~~~g~-~l~~~d~~~~~~I  196 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDD----------NK-VTTVHPGFKGGK-PAVTKDKQ-RVYSIGWEGTHTV  196 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTT----------TE-EEEEEETCCBCB-CEECTTSS-EEEEEBSSTTCEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCC----------CE-EEEeeccCCCCc-eeEecCCC-cEEEEecCCCceE
Confidence            4678999999886 777777789999999876          12 223332333344 99999887 677777655  78


Q ss_pred             EEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee--eeccCCC--eeE
Q 014433          204 CLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS--VVAHQSE--VNC  278 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~--v~~  278 (424)
                      .+++.......   ..+..... ....+.+++++|++..+++ +..++.|+.||..++.. ..+..  .......  ...
T Consensus       197 ~~~d~~~~~~~---~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~  271 (409)
T 3hrp_A          197 YVYMKASGWAP---TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPY  271 (409)
T ss_dssp             EEEEGGGTTCE---EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCE
T ss_pred             EEEEcCCCcee---EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE-EEEecccccCCCCCCcccc
Confidence            88887654221   11111112 3466789999996666765 66788999999986542 11100  1111111  239


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC---------------CCEEEEEEcCCCCcEEEEEE-CCCeE
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK---------------EEVFQVGWNPKNETILASCC-LGRRL  342 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~---------------~~v~~~~~sp~~~~~l~s~~-~dg~i  342 (424)
                      ++|+|++..++++-..++.|+.||...  . +..+.++.               .....++++|++. ++++-. .+++|
T Consensus       272 ia~~p~~g~lyv~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I  347 (409)
T 3hrp_A          272 LIYYFVDSNFYMSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCL  347 (409)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEE
Confidence            999997666788877889999998764  2 33333322               3478999999996 777777 78999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCC---------------CCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGH---------------TSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      +.|++..+.               +..+.++               -....++++++++. ++++-..++.|+.+++
T Consensus       348 ~~~~~~~G~---------------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          348 RKLDILDGY---------------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEETTTTE---------------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             EEEECCCCE---------------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            999975532               1111111               23578899999976 7888888888988775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1.5e-12  Score=119.04  Aligned_cols=180  Identities=13%  Similarity=0.076  Sum_probs=127.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC-CCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP-LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      .++.+++++... ++++|+.+ .+.+|++........ ......+.... .+.. |+.|+|  ++. +|+++ .++.|++
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence            588999999776 78888877 566699764210000 00012232333 4667 999999  666 68877 8899999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      ||+.+...      ......|...+.++.+.+.  . +++++.||.|.+||+..+..   . .   +...|+|++|+|.|
T Consensus       111 ~dv~sl~~------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~---~-~---~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSE------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKST---K-Q---LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTC------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCE---E-E---EEESEEEEEECSSE
T ss_pred             EEchhhhc------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcc---c-c---ccCCceEEEEcCCc
Confidence            99976542      2234456777888877654  3 66889999999999997653   2 1   34689999999988


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCc--ceEe------c---CCCCCEEEEEEcCCCCcEEEE
Q 014433          286 EWILATGSTDKTVKLFDLRKISTA--LHTF------D---SHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~--~~~~------~---~h~~~v~~~~~sp~~~~~l~s  335 (424)
                         ++.|..||++++|+... ...  ..++      .   +|...|.++.|.+++. ++++
T Consensus       175 ---~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~-flv~  230 (388)
T 1xip_A          175 ---LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD-FLAV  230 (388)
T ss_dssp             ---EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE-EEEE
T ss_pred             ---eEEEEcCCcEEEEcCCC-ccccccceecCCcccccccCCCeeEEEEEEecCCe-EEEE
Confidence               56789999999998876 332  4445      2   4788999999999885 4554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.49  E-value=3e-11  Score=121.34  Aligned_cols=205  Identities=12%  Similarity=0.021  Sum_probs=137.2

Q ss_pred             eeEEEecCCCCcEEEEEeCCCe----------------EEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCC
Q 014433          128 VNRARYMPQNPFLIATKTVSAE----------------VYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKF  189 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~----------------v~iw~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~  189 (424)
                      +..++|+|+++ .|+.++.++.                |++|++.+.        .......+..  |...+.++.|+|+
T Consensus       173 ~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~--------~~~~~~v~~~~~~~~~~~~~~~SpD  243 (710)
T 2xdw_A          173 FSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD--------QSEDILCAEFPDEPKWMGGAELSDD  243 (710)
T ss_dssp             SCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC--------GGGCEEEECCTTCTTCEEEEEECTT
T ss_pred             cceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCC--------cccceEEeccCCCCeEEEEEEEcCC
Confidence            67899999997 4555566554                999999762        1111222232  4555789999999


Q ss_pred             CCceEEEEeC-----CCcEEEEeCCC------CCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC---CeEEEE
Q 014433          190 KEGHLLSGSD-----DAQICLWDINA------APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---QYLLIW  255 (424)
Q Consensus       190 ~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---g~i~i~  255 (424)
                      +. +|+.++.     +..|.+||+.+      +..     ....+..+...+.. .|++++..+++.+..+   +.|.+|
T Consensus       244 g~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          244 GR-YVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             SC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             CC-EEEEEEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            98 5555543     56899999975      311     12333445555544 4788888776665443   469999


Q ss_pred             EcCCCCCCCCeeeeeccCC--CeeEEEecCCCCeEEEEEeCCCc--EEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc
Q 014433          256 DLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKT--VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET  331 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~tg~~dg~--i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  331 (424)
                      |+.++.. .....+..+..  .+..++|++.+ .++++...++.  |.+||+.+ +..+..+..+...+..+.++|+++.
T Consensus       317 d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v~~~~~s~d~~~  393 (710)
T 2xdw_A          317 DFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTE  393 (710)
T ss_dssp             ETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSE
T ss_pred             eCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceEEEEecCCCCCE
Confidence            9987541 11234444443  67889998644 57888888884  56677755 5566777777788999999998876


Q ss_pred             EEEEEEC---CCeEEEeeCCCCC
Q 014433          332 ILASCCL---GRRLMVWDLSRID  351 (424)
Q Consensus       332 ~l~s~~~---dg~i~iwd~~~~~  351 (424)
                      ++++.+.   .+.|.+||+.++.
T Consensus       394 l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEeCCCCCCEEEEEECCCCc
Confidence            6655544   4789999997754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=9.3e-12  Score=125.62  Aligned_cols=251  Identities=10%  Similarity=0.035  Sum_probs=154.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          126 GEVNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      ..+..++|+|+|+.++.+.+..|    .|++||+.+        +  ... ....+...+..++|+|+ + .|+.++.++
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--------g--~~~-~~~~~~~~~~~~~wspD-~-~l~~~~~~~  229 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--------G--KPL-ADELKWVKFSGLAWLGN-D-ALLYSRFAE  229 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--------C--CEE-EEEEEEEESCCCEESTT-S-EEEEEECCC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--------C--CCC-CccCCCceeccEEEECC-C-EEEEEEecC
Confidence            46788999999985444433333    599999987        2  211 12112222367999998 6 566666554


Q ss_pred             c--------------EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC----CCeEEEEEcCCCCCC
Q 014433          202 Q--------------ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----DQYLLIWDLRTPSVS  263 (424)
Q Consensus       202 ~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~----dg~i~i~d~~~~~~~  263 (424)
                      .              |++|++.++.....  .+.....+...+..+.|+|+++.++++...    ...|++||+.++.. 
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-  306 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-  306 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCE--EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCE--EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-
Confidence            3              88999876532111  111112233358899999999877655542    34899999987521 


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      .....+..+...+.... .|++..+++....   ++.|.+||+.+.. .....+..+...+..++|+  +..++++...|
T Consensus       307 ~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d  383 (741)
T 1yr2_A          307 GPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHD  383 (741)
T ss_dssp             CCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEET
T ss_pred             cccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEEC
Confidence            11334444444555554 3788864444432   3469999987631 2333344445556678887  34688899999


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCcc
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENI  408 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vw~~~~~~  408 (424)
                      +..+||.+....             .....+.. +...+..+.++|+++.++++.+   ..+.|++||+.++.
T Consensus       384 g~~~l~~~~~~g-------------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          384 AKSQVLAFDLDG-------------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TEEEEEEEETTS-------------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CEEEEEEEeCCC-------------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            988887654211             12222332 3456888999999886555544   34789999998764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=2.7e-11  Score=106.68  Aligned_cols=210  Identities=8%  Similarity=-0.010  Sum_probs=147.1

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL  217 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  217 (424)
                      ++|++++.++.|++||..+          .+.+..+..+. ..+.++.+.|+|. +|+  +.++.|..||. +++.    
T Consensus         6 ~~lv~~~~~~~v~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~----   67 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDT----------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRE----   67 (276)
T ss_dssp             EEEEECTTCSEEEEEETTT----------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCE----
T ss_pred             cEEEeeCCCCEEEEEECCC----------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCE----
Confidence            4899999999999999866          45566777665 4788999999887 666  45778999998 5532    


Q ss_pred             cceeeeecC-CccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeeeee------ccCCCeeEEEecCCCCeEE
Q 014433          218 EAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVV------AHQSEVNCLAFNPFNEWIL  289 (424)
Q Consensus       218 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~l  289 (424)
                        +..+..+ ...+.++.+.+++..++ +.+. ++.|..+|. .++.   +..+.      .+......+++.+++. ++
T Consensus        68 --~W~~~~~~~~~~~~~~~~~dG~~lv-~~~~~~~~v~~vd~-~Gk~---l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l  139 (276)
T 3no2_A           68 --LWNIAAPAGCEMQTARILPDGNALV-AWCGHPSTILEVNM-KGEV---LSKTEFETGIERPHAQFRQINKNKKGN-YL  139 (276)
T ss_dssp             --EEEEECCTTCEEEEEEECTTSCEEE-EEESTTEEEEEECT-TSCE---EEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred             --EEEEcCCCCccccccEECCCCCEEE-EecCCCCEEEEEeC-CCCE---EEEEeccCCCCcccccccCceECCCCC-EE
Confidence              3333333 34788899999997554 5555 777877775 3332   22222      1112455667888887 68


Q ss_pred             EEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433          290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI  369 (424)
Q Consensus       290 ~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      ++...++.|..||..  ++.+.++..+ ..+.++...+++. ++++++.+++|..+|..++.              .+..
T Consensus       140 v~~~~~~~v~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~--------------~~w~  201 (276)
T 3no2_A          140 VPLFATSEVREIAPN--GQLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNR--------------IVRR  201 (276)
T ss_dssp             EEETTTTEEEEECTT--SCEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCC--------------EEEE
T ss_pred             EEecCCCEEEEECCC--CCEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCc--------------EEEE
Confidence            888889999999986  5777777754 4566788889885 78788888899999988653              3444


Q ss_pred             EcCC------CCCcceEEeCCCCCcEEEEE
Q 014433          370 HGGH------TSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       370 ~~~h------~~~v~~~~~~~~~~~~l~s~  393 (424)
                      +..+      ...+..++..+++. ++++.
T Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          202 VNANDIEGVQLFFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             EEGGGSBSCCCSEEEEEEECTTSC-EEEEE
T ss_pred             ecCCCCCCccccccccceEcCCCC-EEEEe
Confidence            4322      12366777888888 55555

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.47  E-value=1e-11  Score=110.70  Aligned_cols=210  Identities=10%  Similarity=-0.008  Sum_probs=143.0

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      ...+..+.....+++|+|++..+++++..++.|..|+..++        ...+..+...+.++++++++. ++++...++
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~   90 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--------LSPEMHPSHHQNGHCLNKQGH-LIACSHGLR   90 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--------EEEEESSCSSEEEEEECTTCC-EEEEETTTT
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--------eEEEECCCCCcceeeECCCCc-EEEEecCCC
Confidence            45566666778899999988767888888999999998754        223344667799999999986 666666678


Q ss_pred             eEEEEEcCCCCCCCCeeee-e-ccCCCeeEEEecCCCCeEEEE----Ee-------------CCCcEEEEECCCCCCcce
Q 014433          251 YLLIWDLRTPSVSKPVQSV-V-AHQSEVNCLAFNPFNEWILAT----GS-------------TDKTVKLFDLRKISTALH  311 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~v~~~~~~~~~l~t----g~-------------~dg~i~iwd~~~~~~~~~  311 (424)
                      .|.+||..++... .+... . .....++.++++|+|. ++++    |+             ..+.|..++..   ..+.
T Consensus        91 ~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~  165 (296)
T 3e5z_A           91 RLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLS  165 (296)
T ss_dssp             EEEEECSTTCCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEE
T ss_pred             eEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC---CCEE
Confidence            9999999776521 11110 1 1123567899999997 6666    32             12345555543   2344


Q ss_pred             EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEE
Q 014433          312 TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIS  391 (424)
Q Consensus       312 ~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  391 (424)
                      .+..+......++|+|++.. |++.+.++.|.+|++.......          .....+..+...+.+++++++|. +++
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~----------~~~~~~~~~~~~p~~i~~d~~G~-l~v  233 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETE----------YQGVHFTVEPGKTDGLRVDAGGL-IWA  233 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEE----------EEEEEECCSSSCCCSEEEBTTSC-EEE
T ss_pred             EeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCc----------CCCeEeeCCCCCCCeEEECCCCC-EEE
Confidence            45556677899999999974 5777788999999986211100          00111133555678899999998 666


Q ss_pred             EEeCCCcEEEEecCCcc
Q 014433          392 SVAEDNILQIWQMAENI  408 (424)
Q Consensus       392 s~~~dg~i~vw~~~~~~  408 (424)
                      +.  ++.|.+|+.....
T Consensus       234 ~~--~~~v~~~~~~g~~  248 (296)
T 3e5z_A          234 SA--GDGVHVLTPDGDE  248 (296)
T ss_dssp             EE--TTEEEEECTTSCE
T ss_pred             Ec--CCeEEEECCCCCE
Confidence            65  7889999987543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=2.1e-10  Score=103.73  Aligned_cols=228  Identities=11%  Similarity=0.026  Sum_probs=148.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .....+|+|++..+++++..++.|..|+...        +  . ...+. ....+.+++|++++. ++++ +.+ .|.+|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--------~--~-~~~~~-~~~~v~~i~~~~dg~-l~v~-~~~-gl~~~  114 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS--------G--R-KTVHA-LPFMGSALAKISDSK-QLIA-SDD-GLFLR  114 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT--------T--E-EEEEE-CSSCEEEEEEEETTE-EEEE-ETT-EEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC--------C--c-EEEEE-CCCcceEEEEeCCCe-EEEE-ECC-CEEEE
Confidence            3467899998777888888889999999876        1  1 12222 356799999999876 4444 444 49999


Q ss_pred             eCCCCCCCCcccceeeee--cCCccEeeEEEecCCCcEEEEEeC------CCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          207 DINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      |..++..    ..+....  .....+++++++|++. ++++...      .+.|..++  +++    +..+.......+.
T Consensus       115 d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~----~~~~~~~~~~~~~  183 (326)
T 2ghs_A          115 DTATGVL----TLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK----VTKLFADISIPNS  183 (326)
T ss_dssp             ETTTCCE----EEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE----EEEEEEEESSEEE
T ss_pred             ECCCCcE----EEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc----EEEeeCCCcccCC
Confidence            9876532    1111111  1124689999999987 4444332      24555555  322    2223233345789


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECC--CCC-Cc-----ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLR--KIS-TA-----LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~--~~~-~~-----~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      ++|+|+++.++++.+.++.|.+||+.  + + ..     +..+......+..+++++++. ++++...++.|.+|+... 
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g-  260 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG-  260 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC-
Confidence            99999998666666677899999986  3 3 21     222333345678899999995 666666678899998732 


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCCC
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAEDN  397 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg  397 (424)
                                    ..+..+..+...+++++|. +++..++++...++
T Consensus       261 --------------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          261 --------------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             --------------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             --------------CEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence                          3344445555668999998 88876666666553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=4.9e-11  Score=119.29  Aligned_cols=250  Identities=12%  Similarity=0.121  Sum_probs=157.5

Q ss_pred             cCCceeEEEecCCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          124 HDGEVNRARYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      |...+..++|||+++.++.+.+.    ...|++||+.+        +  ... ....+......++|+ +++. |+.++.
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--------g--~~~-~~~~~~~k~~~~~Ws-Dg~~-l~y~~~  193 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--------K--QPL-ETPLKDVKFSGISWL-GNEG-FFYSSY  193 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--------C--SEE-EEEEEEEESCCCEEE-TTTE-EEEEES
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--------C--CCC-ccccCCceeccEEEe-CCCE-EEEEEe
Confidence            34467788999999854443332    35799999987        2  211 111111113578999 8884 666666


Q ss_pred             CC-------------cEEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeCC---CeEEEEEcCCCCC
Q 014433          200 DA-------------QICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDD---QYLLIWDLRTPSV  262 (424)
Q Consensus       200 dg-------------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~d---g~i~i~d~~~~~~  262 (424)
                      +.             .|++|++.+.....  ..+..... |...+..+.|+|+++.++++.+.+   ..|+++|+.++..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGC--EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccc--eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            53             39999987653211  11222222 344578899999999887766533   5899999987642


Q ss_pred             CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCC-cceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD---KTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       263 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                        ....+..+....... |++++..+++.+..+   +.|..+|+.+... ....+..|...+.  .|+++++.++++...
T Consensus       272 --~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          272 --PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             --CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             --ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence              244455555555554 666677677676554   5799999987322 1345666666665  899998766666666


Q ss_pred             CC--eEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCcEEEEEeC---CCcEEEEecCCcc
Q 014433          339 GR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDWVISSVAE---DNILQIWQMAENI  408 (424)
Q Consensus       339 dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~  408 (424)
                      ++  .|++|++....               ...+. .....+..+.++++++.++++.+.   -+.+..||+.++.
T Consensus       347 ~g~~~l~~~d~~g~~---------------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          347 DATARVEQFDYEGKR---------------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEECTTSCE---------------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCeeEEEEEECCCCe---------------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            76  57888876421               11221 233456777888888866655443   2789999987764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=5.8e-10  Score=99.16  Aligned_cols=242  Identities=5%  Similarity=-0.038  Sum_probs=161.4

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....+.++++.+++. +.++...++.|.+|+....         .. ...+..+...+.++++.+++. ++++...++.|
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~---------~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v   85 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGR---------IK-EFEVPTPDAKVMCLIVSSLGD-IWFTENGANKI   85 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSC---------EE-EEECSSTTCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCCCc---------eE-EEECCCCCCcceeEEECCCCC-EEEEecCCCeE
Confidence            345788999999886 6666566789999987620         10 112223346788999998776 56666567889


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ..+|.. +..    .. .........+.++++.+++. ++++...++.|..+|.. +..  ...........+..+++++
T Consensus        86 ~~~d~~-g~~----~~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~--~~~~~~~~~~~~~~i~~d~  155 (300)
T 2qc5_A           86 GKLSKK-GGF----TE-YPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTI--YEYDLPNKGSYPAFITLGS  155 (300)
T ss_dssp             EEECTT-SCE----EE-EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCE--EEEECSSTTCCEEEEEECT
T ss_pred             EEECCC-CCe----EE-ecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCE--EEccCCCCCCCceeEEECC
Confidence            999986 321    11 11122335788999998875 66566668899999986 432  1111222346789999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      ++. ++++...++.|..||..  +.... ....+...+..+++++++. ++++....+.|.+|+.. +.           
T Consensus       156 ~g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~-----------  219 (300)
T 2qc5_A          156 DNA-LWFTENQNNSIGRITNT--GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTT-GE-----------  219 (300)
T ss_dssp             TSS-EEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT-CC-----------
T ss_pred             CCC-EEEEecCCCeEEEECCC--CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCC-Cc-----------
Confidence            887 66666667889999983  33222 2223445789999999884 66666667789999973 21           


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                        ........+...+.++++++++. +.++...++.|..|+...
T Consensus       220 --~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          220 --ISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             --EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTS
T ss_pred             --EEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCC
Confidence              11122223445688999999998 777766678899999843

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=9.8e-12  Score=113.60  Aligned_cols=178  Identities=14%  Similarity=0.038  Sum_probs=125.3

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCC-----CCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP-----KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  254 (424)
                      .++.|++++... ++++|+.++ +.+|++....     ....+.+.... .+.. |+.++|  ++. .++++ .++.|++
T Consensus        39 ~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence            578899999776 788888874 5569875432     00012221222 3566 999999  665 44466 8899999


Q ss_pred             EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      ||+++...   ......+..++.++.+.+.  . +|+++.||.|.+||+.. +....    +...|++++|||.|   ++
T Consensus       111 ~dv~sl~~---~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~-~~~~~----~~~~Vs~v~WSpkG---~~  176 (388)
T 1xip_A          111 LDLEELSE---FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRT-KSTKQ----LAQNVTSFDVTNSQ---LA  176 (388)
T ss_dssp             EESSSTTC---EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTT-CCEEE----EEESEEEEEECSSE---EE
T ss_pred             EEchhhhc---cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccC-Ccccc----ccCCceEEEEcCCc---eE
Confidence            99988653   4445567778888877653  3 78889999999999997 33322    45689999999998   57


Q ss_pred             EEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE------c---CCCCCcceEEeCCCCCcEEEE
Q 014433          335 SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH------G---GHTSKISDFSWNPCEDWVISS  392 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~---~h~~~v~~~~~~~~~~~~l~s  392 (424)
                      .|..||.+++|+.......            ....+      .   +|...|.++.|.+++.+ +++
T Consensus       177 vg~~dg~i~~~~~~~~~~~------------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f-lv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEME------------KQFEFSLPSELEELPVEEYSPLSVTILSPQDF-LAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEE------------EEEEECCCHHHHTSCTTTSEEEEEEESSSSEE-EEE
T ss_pred             EEEcCCcEEEEcCCCcccc------------ccceecCCcccccccCCCeeEEEEEEecCCeE-EEE
Confidence            7999999999987654210            02222      2   46788999999999885 444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.40  E-value=1.4e-09  Score=99.97  Aligned_cols=249  Identities=10%  Similarity=-0.052  Sum_probs=154.0

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCceeE
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STEGYG  183 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~  183 (424)
                      ..+.-.... .++++|+++.+.++..         .++.|.+||..+          .+....+.-.       ......
T Consensus        61 ~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t----------~~~~~~i~~~~~~~~~~g~~p~~  129 (373)
T 2mad_H           61 GHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFDVGPYSWM  129 (373)
T ss_pred             EEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC----------CcEEEEEECCCccccccCCCccc
Confidence            344433333 8999999986555532         367899999976          2323332211       123458


Q ss_pred             EEecCCCCceEEEEeC--CCcEEEEeCCCCCCCCcccceee-eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          184 LSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      +.|+|+++ +|+++..  ++.|.++| .+++..      .. +. ...   ++.+.|.++..+++.+.||.+.++|. ++
T Consensus       130 ~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~------~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          130 NANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSD------DQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             eEECCCCC-EEEEEecCCCCeEEEEE-CCCCEE------eEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            99999998 5666653  57899999 776432      22 11 111   24566777777888889999999999 65


Q ss_pred             CCCCCeeeee-----ccCCCe-eEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecC----------CCCCEEEE
Q 014433          261 SVSKPVQSVV-----AHQSEV-NCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDS----------HKEEVFQV  323 (424)
Q Consensus       261 ~~~~~~~~~~-----~~~~~v-~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~----------h~~~v~~~  323 (424)
                      +.   .....     ....++ ....+.+++..++++. ..+.+.+.|+.... ..+..+..          .......+
T Consensus       197 ~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          197 GA---AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             cE---EEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence            53   21111     111221 2345666665544444 67899999997522 11222211          12234457


Q ss_pred             EEcCCCCcEEEEEE---------CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          324 GWNPKNETILASCC---------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       324 ~~sp~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      +++|++..++++..         .++.|.++|+.+.              +.+..+.. .....+++|+|+++++++++.
T Consensus       273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------------~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------------QTSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--------------EEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence            88999876555543         2357999999875              33444432 224789999999995566666


Q ss_pred             -CCCcEEEEecCCccCCC
Q 014433          395 -EDNILQIWQMAENIYHD  411 (424)
Q Consensus       395 -~dg~i~vw~~~~~~~~~  411 (424)
                       .++.|.|+|+.++....
T Consensus       338 ~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          338 AGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CCCCeEEEEECCCCCEEe
Confidence             58999999999876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.40  E-value=4e-11  Score=120.08  Aligned_cols=205  Identities=9%  Similarity=0.008  Sum_probs=130.6

Q ss_pred             cCCCceeEEEecCCCCceEE-E----EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          176 GHSTEGYGLSWSKFKEGHLL-S----GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       176 ~h~~~v~~l~~~~~~~~~l~-s----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      +|...+.+++|||+|+ +|+ +    |+.+..|++||+.++.....    ..+.  ......++|+|+++.++ .++.|.
T Consensus       118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~----~~~~--~~~~~~~~wspDg~~l~-~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV----DVIE--GGKYATPKWTPDSKGFY-YEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS----CCBS--CCTTCCCEECTTSSEEE-EEECCC
T ss_pred             CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC----cccC--cccccceEEecCCCEEE-EEEecC
Confidence            3555789999999998 455 3    33456899999988753200    0111  11126899999998665 566655


Q ss_pred             e-------------EEEEEcCCCCCC-CCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-C--cEEEEECCCCCCcceEe
Q 014433          251 Y-------------LLIWDLRTPSVS-KPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-K--TVKLFDLRKISTALHTF  313 (424)
Q Consensus       251 ~-------------i~i~d~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-g--~i~iwd~~~~~~~~~~~  313 (424)
                      .             |++|++.++... ..+.....+...+..+.|+|+|++++++.... +  .|.++|...  .....+
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~l  267 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE--KDFRLL  267 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--SSCEEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--CceEEe
Confidence            5             999999876521 11222233456788999999999755554433 3  566665443  345556


Q ss_pred             cCCCCCEEEEEEcCCCCcEEEEEE---CCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcE
Q 014433          314 DSHKEEVFQVGWNPKNETILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWV  389 (424)
Q Consensus       314 ~~h~~~v~~~~~sp~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~  389 (424)
                      ..+...+....| +++. +++.+.   .++.|.+||+......           ........+ ...+.+++|+ ++. +
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~-~~~-l  332 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVPEDSSASLLSVSIV-GGH-L  332 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEECCCSSCEEEEEEEE-TTE-E
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEecCCCCCeEEEEEEE-CCE-E
Confidence            566666777777 6675 666655   2578999998764210           111222222 3457788888 444 8


Q ss_pred             EEEEeCCCcEEEEecC
Q 014433          390 ISSVAEDNILQIWQMA  405 (424)
Q Consensus       390 l~s~~~dg~i~vw~~~  405 (424)
                      +++...|+..+||.+.
T Consensus       333 v~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          333 SLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEEEECCEEEEEEEe
Confidence            8999999998888665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=1.2e-10  Score=102.12  Aligned_cols=199  Identities=8%  Similarity=-0.034  Sum_probs=138.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ...+.++++.+++. ++++.. ++.|.+|+....           ....+. .....+.++++.+++. ++++...++.|
T Consensus        66 ~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~-----------~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i  131 (270)
T 1rwi_B           66 LYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSN-----------NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRV  131 (270)
T ss_dssp             CCSCCCEEECTTCC-EEEEET-TTEEEEECTTCS-----------CCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEE
T ss_pred             cCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCc-----------eEeeeecCCcCCCcceEECCCCC-EEEEECCCCEE
Confidence            35678899999886 566555 889999997651           112222 2235688999999876 66766778899


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      .+|+..+...      ..........+.++++++++. ++++...++.|.+||......   ......+...+..|++++
T Consensus       132 ~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          132 VKLAAGSKTQ------TVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             EEECTTCCSC------EECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECT
T ss_pred             EEEECCCcee------EeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECC
Confidence            9997644321      111112234678899999886 776777788999999876442   111122336788999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +|. ++++...++.|.+||... .........+-..+.++++++++. ++++...++.|+++++...
T Consensus       202 ~g~-l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          202 AGT-VYVTEHNTNQVVKLLAGS-TTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TCC-EEEEETTTSCEEEECTTC-SCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred             CCC-EEEEECCCCcEEEEcCCC-CcceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence            884 777777788999999875 222222222335789999999995 8888888999999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=1.6e-09  Score=96.22  Aligned_cols=238  Identities=5%  Similarity=-0.060  Sum_probs=155.4

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...+.++++.+++. +.++...++.|..||...          ......+......+.++++.+++. ++++...++.|.
T Consensus        61 ~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~g----------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~  128 (300)
T 2qc5_A           61 DAKVMCLIVSSLGD-IWFTENGANKIGKLSKKG----------GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIG  128 (300)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTTS----------CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEE
T ss_pred             CCcceeEEECCCCC-EEEEecCCCeEEEECCCC----------CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEE
Confidence            36788999999886 666655678899998763          111112222346688999998776 566666678999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      .+|.. +..    .. .........+..+++.+++. ++++...++.|..+|. ++...  ..........+..++++++
T Consensus       129 ~~~~~-g~~----~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~--~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          129 KLTAD-GTI----YE-YDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLE--EYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             EECTT-SCE----EE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE--EEECSSTTCCEEEEEECTT
T ss_pred             EECCC-CCE----EE-ccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEE--EeeCCCCCCCcceEEECCC
Confidence            99886 321    10 11222345788999999886 6666666789999998 43321  1112233456889999998


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      +. ++++....+.|.+||..  +.... ....+...+.++++++++. ++++...++.|..|+.. +.            
T Consensus       199 g~-l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~------------  261 (300)
T 2qc5_A          199 GA-LWFVEIMGNKIGRITTT--GEISEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND-NT------------  261 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC------------
T ss_pred             CC-EEEEccCCCEEEEEcCC--CcEEEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC-Cc------------
Confidence            86 66666667789999983  33222 2333456789999999985 66666667889999973 21            


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                       ...+........+.++++.+++. ++++.. . .|..+++.
T Consensus       262 -~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          262 -IQEYQLQTENAEPHGITFGKDGS-VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -EEEEECCSTTCCCCCEEECTTSC-EEEECS-S-EEEEEEEC
T ss_pred             -EEEEECCccCCccceeEeCCCCC-EEEEcc-C-ceEEeCCC
Confidence             11122233345688999999998 566544 4 67666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.32  E-value=2.9e-10  Score=102.88  Aligned_cols=202  Identities=6%  Similarity=0.003  Sum_probs=133.9

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceeEEEecCCCCce
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKEGH  193 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~  193 (424)
                      +..+.....+..+++++++ .++++...++.|.+||..+          .+....+....     .....+++  ++..+
T Consensus        77 ~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t----------~~~~~~i~~g~~~~~~~~p~~i~~--~~~~l  143 (328)
T 3dsm_A           77 VGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT----------YEITGYIECPDMDMESGSTEQMVQ--YGKYV  143 (328)
T ss_dssp             EEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT----------TEEEEEEECTTCCTTTCBCCCEEE--ETTEE
T ss_pred             EEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC----------CeEEEEEEcCCccccCCCcceEEE--ECCEE
Confidence            3445556788999999887 4666655789999999886          22233333222     14567777  34434


Q ss_pred             EEEEe-CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----------CeEEEEEcCCCCC
Q 014433          194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----------QYLLIWDLRTPSV  262 (424)
Q Consensus       194 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----------g~i~i~d~~~~~~  262 (424)
                      +++.. .++.|.++|+.+++.      ...+.. ......++++|+++ +++++..+          +.|.++|..+.+.
T Consensus       144 yv~~~~~~~~v~viD~~t~~~------~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKV------VDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEE------EEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             EEEcCCCCCEEEEEECCCCeE------EEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            44443 488999999987632      222222 33457899999886 55555444          7899999987653


Q ss_pred             CCCeeeeecc-CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-E-ecCCCCCEEEEEEcCCCCcEEEEE---
Q 014433          263 SKPVQSVVAH-QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-T-FDSHKEEVFQVGWNPKNETILASC---  336 (424)
Q Consensus       263 ~~~~~~~~~~-~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~-~~~h~~~v~~~~~sp~~~~~l~s~---  336 (424)
                         ...+... ......++++|+++.++ ++..  .|.+||..+ ++... . +..+......++++|++..++++.   
T Consensus       216 ---~~~~~~~~g~~p~~la~~~d~~~ly-v~~~--~v~~~d~~t-~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~  288 (328)
T 3dsm_A          216 ---EKQFKFKLGDWPSEVQLNGTRDTLY-WINN--DIWRMPVEA-DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID  288 (328)
T ss_dssp             ---EEEEECCTTCCCEEEEECTTSCEEE-EESS--SEEEEETTC-SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred             ---EEEEecCCCCCceeEEEecCCCEEE-EEcc--EEEEEECCC-CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence               3333221 24689999999998644 4433  899999986 33321 1 222246789999999666677777   


Q ss_pred             -ECCCeEEEeeCC
Q 014433          337 -CLGRRLMVWDLS  348 (424)
Q Consensus       337 -~~dg~i~iwd~~  348 (424)
                       ..++.|.+||..
T Consensus       289 y~~~~~V~v~d~~  301 (328)
T 3dsm_A          289 YQQQGIVYRYSPQ  301 (328)
T ss_dssp             SSSEEEEEEECTT
T ss_pred             cccCCEEEEECCC
Confidence             678899999987

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.29  E-value=1.7e-09  Score=96.74  Aligned_cols=229  Identities=11%  Similarity=0.041  Sum_probs=146.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      ..........|+|++..+++++..++.|..|+...           . ...+..+...+.++++++++. ++++...++.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~  108 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------T-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA  108 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------C-EEEEEESCSCEEEEEECTTSC-EEEEETTTTE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------C-EEEEeCCCCccceeeECCCCC-EEEEECCCCE
Confidence            45566778999999877888888899999998743           1 234555667789999999887 5555555678


Q ss_pred             EEEEeCCCCCCCCccccee-eeec-CCccEeeEEEecCCCcEEEE----EeC-------------CCeEEEEEcCCCCCC
Q 014433          203 ICLWDINAAPKNKSLEAMQ-IFKV-HEGVVEDVAWHLRHEYLFGS----VGD-------------DQYLLIWDLRTPSVS  263 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~s----~~~-------------dg~i~i~d~~~~~~~  263 (424)
                      |.+|+.. +..    ..+. ...+ ....++++++++++. ++++    |..             .+.|..+|..+++. 
T Consensus       109 v~~~~~~-g~~----~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-  181 (305)
T 3dr2_A          109 ITRSDAD-GQA----HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-  181 (305)
T ss_dssp             EEEECTT-SCE----EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-
T ss_pred             EEEECCC-CCE----EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-
Confidence            9999975 321    1111 1111 123577899999986 5544    221             25677777766552 


Q ss_pred             CCeeeeeccCCCeeEEEecCCCCeEEEEEeC-----CCcEEEEECCCCCCcce---Ee-cCCCCCEEEEEEcCCCCcEEE
Q 014433          264 KPVQSVVAHQSEVNCLAFNPFNEWILATGST-----DKTVKLFDLRKISTALH---TF-DSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       264 ~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~---~~-~~h~~~v~~~~~sp~~~~~l~  334 (424)
                         ..+. .....+.++|+|++..++++.+.     .+.|.+||+....  +.   .+ .........++++++|. +.+
T Consensus       182 ---~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~-lwv  254 (305)
T 3dr2_A          182 ---QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGW-LWS  254 (305)
T ss_dssp             ---EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSC-EEE
T ss_pred             ---EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCC-EEE
Confidence               2222 34467889999999854444433     2789999987522  11   11 11234456789999996 444


Q ss_pred             EEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014433          335 SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN  397 (424)
Q Consensus       335 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg  397 (424)
                      + +.+| |.+|+...               ..+..+..+. .+..++|.++++.++++ +.++
T Consensus       255 ~-~~~g-v~~~~~~g---------------~~~~~~~~~~-~~~~~~f~~d~~~L~it-~~~~  298 (305)
T 3dr2_A          255 S-SGTG-VCVFDSDG---------------QLLGHIPTPG-TASNCTFDQAQQRLFIT-GGPC  298 (305)
T ss_dssp             C-CSSE-EEEECTTS---------------CEEEEEECSS-CCCEEEECTTSCEEEEE-ETTE
T ss_pred             e-cCCc-EEEECCCC---------------CEEEEEECCC-ceeEEEEeCCCCEEEEE-cCCe
Confidence            3 4444 99998743               3344444333 48899999988855554 4454

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=1.4e-10  Score=105.68  Aligned_cols=260  Identities=13%  Similarity=0.104  Sum_probs=151.4

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEe--CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE  191 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  191 (424)
                      +.++.+..+.  ..+..++++|+++ ++++..  .++.++||.+... ....... ..  .....|-..+.++++.+++.
T Consensus         7 g~~~~v~~~~--~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g-~~~~~p~-~~--~~~~~~~~~p~gv~~d~~g~   79 (343)
T 2qe8_A            7 DRLEVVAELS--LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQD-GLIPFPP-QS--GNAIITFDTVLGIKSDGNGI   79 (343)
T ss_dssp             -CCEEEEEES--SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETT-EEEESCC-CC--SSCCCCCSCEEEEEECSSSE
T ss_pred             ceeEEEEEcC--CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCC-CeecCCC-cc--cCcccceeEeeEEEEcCCCc
Confidence            4566666655  7889999999986 676653  2343555555421 0000000 00  01123556799999999875


Q ss_pred             ceEEEEeC-----CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCCC
Q 014433          192 GHLLSGSD-----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVS  263 (424)
Q Consensus       192 ~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~  263 (424)
                       ++++-..     ++.|.+||+.+++....+........+...+..+++++++..++++..   .++.|.+||+.+++. 
T Consensus        80 -L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-  157 (343)
T 2qe8_A           80 -VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-  157 (343)
T ss_dssp             -EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-
T ss_pred             -EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-
Confidence             4444332     578999999876321111100000112345789999987667777766   688999999976542 


Q ss_pred             CCeeeeecc-----------------------------CCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCC--CC---
Q 014433          264 KPVQSVVAH-----------------------------QSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKI--ST---  308 (424)
Q Consensus       264 ~~~~~~~~~-----------------------------~~~v~~v~~~~~~~~~l~tg~~dg-~i~iwd~~~~--~~---  308 (424)
                        ...+..|                             ...++.|+|+|+++. |+.+...+ .+..++....  ..   
T Consensus       158 --~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~  234 (343)
T 2qe8_A          158 --ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLTD  234 (343)
T ss_dssp             --EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred             --EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence              1111110                             123688999999985 45555444 5666653210  00   


Q ss_pred             --cce--EecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          309 --ALH--TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       309 --~~~--~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                        ...  ...++......++++++| .++++...++.|.+||...+..            ..+.. ..+...+.+++|.+
T Consensus       235 ~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~------------~~~~~-~~~~~~p~~va~~~  300 (343)
T 2qe8_A          235 AELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY------------KLLVT-DEKLSWTDSFNFGS  300 (343)
T ss_dssp             HHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE------------EEEEE-CGGGSCEEEEEECT
T ss_pred             hhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE------------EEEEE-CCceecCCeeEECC
Confidence              000  111234456789999998 4788888899999999833210            11111 12244678999999


Q ss_pred             CCCcEEEEEeCCCcEE
Q 014433          385 CEDWVISSVAEDNILQ  400 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~  400 (424)
                      ++. ++++.+..+.+.
T Consensus       301 ~g~-l~v~~~~~~~~~  315 (343)
T 2qe8_A          301 DGY-LYFDCNQLHHSA  315 (343)
T ss_dssp             TSC-EEEEECCGGGSG
T ss_pred             CCc-EEEEeCcccccc
Confidence            988 677766544443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.28  E-value=5.3e-10  Score=98.40  Aligned_cols=183  Identities=11%  Similarity=0.039  Sum_probs=132.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA  271 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~  271 (424)
                      +|++++.++.|.+||.++++.      +..+..+. ..+.++.+.|+++ +++  +.++.|..||. +++.   +..+..
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~------~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~---~W~~~~   73 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEI------VWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRE---LWNIAA   73 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEE------EEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCE---EEEEEC
T ss_pred             EEEeeCCCCEEEEEECCCCeE------EEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCE---EEEEcC
Confidence            799999999999999977743      34444444 4688999999986 554  45788999998 6553   555554


Q ss_pred             c-CCCeeEEEecCCCCeEEEEEeC-CCcEEEEECCCCCCcceEecC------CCCCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          272 H-QSEVNCLAFNPFNEWILATGST-DKTVKLFDLRKISTALHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       272 ~-~~~v~~v~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      + ...+.++.+.++|. ++++.+. ++.|..+|..  ++.+..+..      +......+++.+++. ++++...++.|.
T Consensus        74 ~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~  149 (276)
T 3no2_A           74 PAGCEMQTARILPDGN-ALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVR  149 (276)
T ss_dssp             CTTCEEEEEEECTTSC-EEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEE
T ss_pred             CCCccccccEECCCCC-EEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEE
Confidence            3 34688999999998 5666665 7777777753  555555442      112455678889985 788888999999


Q ss_pred             EeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .||.. +              +.+..+..+ ..+.++...+++. ++++++.++.|..+|..++.+
T Consensus       150 ~~d~~-G--------------~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          150 EIAPN-G--------------QLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             EECTT-S--------------CEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCE
T ss_pred             EECCC-C--------------CEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE
Confidence            99987 4              445555543 3467788899998 677778788899999986644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=5.4e-09  Score=93.07  Aligned_cols=209  Identities=10%  Similarity=0.087  Sum_probs=135.4

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD  256 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d  256 (424)
                      +..-.-+..|++++..++++...++.|..||..++..       ..+ .....+.++++++++. ++++ . ++.|.+||
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALN   79 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEE
Confidence            3445568999997766777777889999999976521       112 2456799999999987 5433 3 57899999


Q ss_pred             cCCCCCCCCeeeeec--cCCCeeEEEecCCCCeEEEEEeC---------CCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433          257 LRTPSVSKPVQSVVA--HQSEVNCLAFNPFNEWILATGST---------DKTVKLFDLRKISTALHTFDSHKEEVFQVGW  325 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  325 (424)
                      ..++.. ..+.....  ....++.++++|+|. ++++...         ...-.||.+...+. +..+..+-...+.++|
T Consensus        80 ~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~  156 (297)
T 3g4e_A           80 WKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDW  156 (297)
T ss_dssp             TTTTEE-EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEE
T ss_pred             CCCCcE-EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEE
Confidence            987542 11111111  123478899999998 4544322         12345555543233 2223333456789999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCC--CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          326 NPKNETILASCCLGRRLMVWDLS--RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      +|+++.++++.+.++.|.+|++.  .+...         ..+.+..+..+......++++++|. +.++...++.|.+|+
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLD  226 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEEC
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEc
Confidence            99998666777778999999874  22110         0122333333345678899999998 777777788899999


Q ss_pred             cCCccC
Q 014433          404 MAENIY  409 (424)
Q Consensus       404 ~~~~~~  409 (424)
                      ..++.+
T Consensus       227 ~~tG~~  232 (297)
T 3g4e_A          227 PVTGKR  232 (297)
T ss_dssp             TTTCCE
T ss_pred             CCCceE
Confidence            986643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.24  E-value=4.6e-09  Score=95.63  Aligned_cols=251  Identities=14%  Similarity=0.032  Sum_probs=152.8

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCce
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STEG  181 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v  181 (424)
                      ++.++.-..... ++++|+++.++++..         .++.|.+||..+          .+....+.-.       ....
T Consensus        71 v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t----------~~v~~~I~v~~g~r~~~g~~P  139 (386)
T 3sjl_D           71 VIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT----------LLPTADIELPDAPRFLVGTYP  139 (386)
T ss_dssp             EEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT----------CCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC----------CeEEEEEECCCccccccCCCC
Confidence            344554333334 999999986666542         367899999987          3444444321       1246


Q ss_pred             eEEEecCCCCceEEEEeC--CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          182 YGLSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      ..++++|+|+ +++++..  ++.|.++|+.+.+.      +..+.. .+ .  ....|.+...|++.+.||.+.+.++..
T Consensus       140 ~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~v------v~tI~v-~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          140 WMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAF------KRMLDV-PD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             GGEEECTTSS-EEEEEECSSSCEEEEEETTTTEE------EEEEEC-CS-E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             ceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcE------EEEEEC-CC-c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence            6899999998 4665543  68999999987743      222321 11 1  122355555666888899999999876


Q ss_pred             -CCCCCCeeeeecc----CCCee-EEEec-CCCCeEEEEEeCCCcEEEEECCCCC-CcceEec----------CCCCCEE
Q 014433          260 -PSVSKPVQSVVAH----QSEVN-CLAFN-PFNEWILATGSTDKTVKLFDLRKIS-TALHTFD----------SHKEEVF  321 (424)
Q Consensus       260 -~~~~~~~~~~~~~----~~~v~-~v~~~-~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~----------~h~~~v~  321 (424)
                       ++.   ......+    ..++. ...|. ++|+ +++ .+.+|.|++.|+.... ..+..+.          .......
T Consensus       209 ~g~v---~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q  283 (386)
T 3sjl_D          209 EGTP---EITHTEVFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  283 (386)
T ss_dssp             SSCC---EEEECCCCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             CCeE---EEeecceeccccccccccceeEcCCCc-EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence             342   1111111    12221 23554 5564 333 5568999999997632 1222221          0122344


Q ss_pred             EEEEcCCCCcEEEEEEC---------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEE
Q 014433          322 QVGWNPKNETILASCCL---------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVIS  391 (424)
Q Consensus       322 ~~~~sp~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~  391 (424)
                      .++++|++..++++...         .+.|.++|+.+.+              .+..+.. ...+++++++++++ .+++
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--------------v~~~i~v-g~~~~~lavs~D~~~~ly~  348 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------------RLAKFEM-GHEIDSINVSQDEKPLLYA  348 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe--------------EEEEEEC-CCCcceEEECCCCCeEEEE
Confidence            57789988766655432         2579999998864              2332221 12578999999996 4445


Q ss_pred             EEeCCCcEEEEecCCccCC
Q 014433          392 SVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       392 s~~~dg~i~vw~~~~~~~~  410 (424)
                      +...++.|.++|..++.+.
T Consensus       349 tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          349 LSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EETTTTEEEEEETTTCCEE
T ss_pred             EcCCCCeEEEEECCCCcEE
Confidence            5556899999999988653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.22  E-value=4.2e-09  Score=94.34  Aligned_cols=201  Identities=10%  Similarity=0.114  Sum_probs=133.5

Q ss_pred             cCCceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-e-----cCCCceeEEEecCCCCceEEE
Q 014433          124 HDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-R-----GHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       124 h~~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~-----~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +...+.++++.++ +. ++++.. .+.|.+|+... .           ...+ .     .....+.++++.+++. ++++
T Consensus        69 ~~~~~~~i~~~~~~g~-l~v~~~-~~~l~~~d~~g-~-----------~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~  133 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQ-LFVADM-RLGLLVVQTDG-T-----------FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWIT  133 (314)
T ss_dssp             EECCEEEEEECSSSSE-EEEEET-TTEEEEEETTS-C-----------EEECCSBCTTSCBCBCCCEEEECTTSC-EEEE
T ss_pred             CCCCCceEEEecCCCc-EEEEEC-CCCEEEEeCCC-C-----------EEEEEeccCCCccccCCcCEEECCCCC-EEEE
Confidence            3467889999998 64 555443 44788898762 1           0111 1     1123578999999886 5555


Q ss_pred             EeCC---------------CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEe----cCCCcEEEEEeCCCeEEEEEc
Q 014433          197 GSDD---------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH----LRHEYLFGSVGDDQYLLIWDL  257 (424)
Q Consensus       197 ~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~s~~~dg~i~i~d~  257 (424)
                      ...+               +.|..|+.. +.       ...+..+......++|+    ++++.++++...++.|.+||+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~  205 (314)
T 1pjx_A          134 APAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             ECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             ecCcccccccccccccCCCCeEEEECCC-CC-------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEEC
Confidence            5544               466667654 21       11112233456889999    998777767677899999998


Q ss_pred             C-CCCCC--CCeeeeeccC-CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEE
Q 014433          258 R-TPSVS--KPVQSVVAHQ-SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       258 ~-~~~~~--~~~~~~~~~~-~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                      . .+...  .....+..+. ..+..++++++|. ++++...++.|.+||..+ ++.+..+..+...+.+++|+|++..++
T Consensus       206 ~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          206 KGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             CCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCceeEEECCCCCEEE
Confidence            6 32210  0112222232 5678899999886 677776788999999885 456666666668899999999996566


Q ss_pred             EEEECCCeEEEeeCCC
Q 014433          334 ASCCLGRRLMVWDLSR  349 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~  349 (424)
                      ++...++.|..|++..
T Consensus       284 v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          284 VTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEETTTTEEEEEECSS
T ss_pred             EEeCCCCeEEEEeCCC
Confidence            6666678899999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.22  E-value=2.6e-09  Score=99.55  Aligned_cols=198  Identities=8%  Similarity=0.035  Sum_probs=132.3

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC--eEEEEE
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWD  256 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~i~d  256 (424)
                      .....|+|++++. ++++...++.|++||+.++..       ..+........ ++|++++..++ ++..++  .|.+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~-------~~~~~~~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKV-------TTVHPGFKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYM  200 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEE-------EEEEETCCBCB-CEECTTSSEEE-EEBSSTTCEEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEE-------EEeeccCCCCc-eeEecCCCcEE-EEecCCCceEEEEE
Confidence            3578999999876 677777789999999976521       11211222334 99999998665 555544  799999


Q ss_pred             cCCCCCCCCeeee---ec-cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-----cCCCCCE--EEEEE
Q 014433          257 LRTPSVSKPVQSV---VA-HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-----DSHKEEV--FQVGW  325 (424)
Q Consensus       257 ~~~~~~~~~~~~~---~~-~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~h~~~v--~~~~~  325 (424)
                      ......   ...+   .. ....+.+++++|++..+++ +..++.|+.||.... . ...+     .++...-  ..++|
T Consensus       201 ~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~-~-~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          201 KASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQ-E-VTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             GGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTC-C-EEEEEECCCCSCCCCSSCCEEEE
T ss_pred             cCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCC-C-EEEEecccccCCCCCCccccEEE
Confidence            876542   2222   12 4566789999996555555 667889999999863 2 2222     1222222  39999


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC---------------CCCcceEEeCCCCCcEE
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH---------------TSKISDFSWNPCEDWVI  390 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~l  390 (424)
                      +|++..++++....+.|+.|+....                +..+.++               -.....+++++++. ++
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~----------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-ly  337 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGE----------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FY  337 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCC----------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EE
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCC----------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EE
Confidence            9965567777778899999987642                1111111               23468899999999 78


Q ss_pred             EEEe-CCCcEEEEecCCccC
Q 014433          391 SSVA-EDNILQIWQMAENIY  409 (424)
Q Consensus       391 ~s~~-~dg~i~vw~~~~~~~  409 (424)
                      ++-. .++.|+.|++.++.+
T Consensus       338 vad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEE
T ss_pred             EEeCCCCCEEEEEECCCCEE
Confidence            8877 889999999766643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.20  E-value=5.3e-09  Score=96.88  Aligned_cols=256  Identities=12%  Similarity=0.025  Sum_probs=156.3

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCc
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE  180 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~  180 (424)
                      +++.++.-.... .++++|+++.++++..         .++.|.++|..+          .+....+.-.       ...
T Consensus       110 ~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t----------~~vv~~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          110 RILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT----------FLPIADIELPDAPRFLVGTY  178 (426)
T ss_dssp             EEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT----------CCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC----------CcEEEEEECCCccccccCCC
Confidence            344455433334 8999999986666542         467899999987          3444444311       234


Q ss_pred             eeEEEecCCCCceEEEEeC--CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          181 GYGLSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ...+.++|+++ +|+++..  ++.|.+.|+.+.+.      +..+.. ..   +....|.+...+++.+.||.+.+.++.
T Consensus       179 P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kv------v~~I~v-~g---~~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          179 QWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTF------DRMLDV-PD---CYHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             GGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEE------EEEEEC-CS---EEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             cceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeE------EEEEEc-CC---ceeeccCCCcEEEEEcCCCCEEEEECC
Confidence            56899999998 5666553  68899999987643      222221 11   133455555677788889999988885


Q ss_pred             CCCCCCCe-eeeeccCCCe-eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-cceEecC----------CCCCEEEEEE
Q 014433          259 TPSVSKPV-QSVVAHQSEV-NCLAFNPFNEWILATGSTDKTVKLFDLRKIST-ALHTFDS----------HKEEVFQVGW  325 (424)
Q Consensus       259 ~~~~~~~~-~~~~~~~~~v-~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~----------h~~~v~~~~~  325 (424)
                      +++..... ..+.....++ ..+.+.+++..+++ ....+.|.+.|+..... .+..+..          .......+++
T Consensus       248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~  326 (426)
T 3c75_H          248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY  326 (426)
T ss_dssp             TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred             CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence            54421000 0111111221 23567888886444 45688999999865221 1111110          0112223789


Q ss_pred             cCCCCcEEEEEEC---------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-C
Q 014433          326 NPKNETILASCCL---------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-E  395 (424)
Q Consensus       326 sp~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~  395 (424)
                      +|++..++++...         ++.|.++|+.+.+              .+..+... ....++.|+|+++.+++++. .
T Consensus       327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------------vv~~I~vg-~~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------------RINKIELG-HEIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred             cCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------------EEEEEECC-CCcCeEEEccCCCEEEEEEcCC
Confidence            9998766665432         3579999998863              33333211 14789999999984455555 6


Q ss_pred             CCcEEEEecCCccCC
Q 014433          396 DNILQIWQMAENIYH  410 (424)
Q Consensus       396 dg~i~vw~~~~~~~~  410 (424)
                      ++.|.|+|+.+..+.
T Consensus       392 s~~VsVID~~t~kvv  406 (426)
T 3c75_H          392 TQTLHIYDAATGEEL  406 (426)
T ss_dssp             TTEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEE
Confidence            999999999988654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.19  E-value=1.6e-09  Score=109.24  Aligned_cols=203  Identities=11%  Similarity=0.075  Sum_probs=124.5

Q ss_pred             CCCceeEEEecCCCCceEEEEeC-CC----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSD-DA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-  250 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-  250 (424)
                      |...+.+++|||+|+ +|+.++. +|    .|++||+.++..      +.. ..+...+..++|+|+ +.++.+ +.++ 
T Consensus       161 ~~~~~~~~~~SPDG~-~la~~~~~~G~e~~~i~v~dl~tg~~------~~~-~~~~~~~~~~~wspD-~~l~~~-~~~~~  230 (741)
T 1yr2_A          161 GATALDAWAASDDGR-LLAYSVQDGGSDWRTVKFVGVADGKP------LAD-ELKWVKFSGLAWLGN-DALLYS-RFAEP  230 (741)
T ss_dssp             --EEEEEEEECTTSS-EEEEEEEETTCSEEEEEEEETTTCCE------EEE-EEEEEESCCCEESTT-SEEEEE-ECCCC
T ss_pred             CCEEEEeEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCC------CCc-cCCCceeccEEEECC-CEEEEE-EecCc
Confidence            334678999999998 4655443 34    599999987743      111 112223468999999 766644 4443 


Q ss_pred             -------------eEEEEEcCCCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeC----CCcEEEEECCCCCCc-c
Q 014433          251 -------------YLLIWDLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGST----DKTVKLFDLRKISTA-L  310 (424)
Q Consensus       251 -------------~i~i~d~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~-~  310 (424)
                                   .|++|++.++.. .....+.  .+...+..+.|+|+|+++++++..    ...|++||+.+.... .
T Consensus       231 ~~~~~~~~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          231 KEGQAFQALNYNQTVWLHRLGTPQS-ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             --------CCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC
T ss_pred             ccccccccCCCCCEEEEEECCCCch-hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc
Confidence                         388999876542 1122222  233358899999999965555442    348999999863112 4


Q ss_pred             eEecCCCCCEEEEEEcCCCCcEEEEEEC---CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014433          311 HTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED  387 (424)
Q Consensus       311 ~~~~~h~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  387 (424)
                      ..+..+...+.... +|+++.+++....   .+.|.+||+....            .........+...+.+++|.  +.
T Consensus       310 ~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------------~~~~~l~~~~~~~l~~~~~~--~~  374 (741)
T 1yr2_A          310 TALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST------------PRFDTVVPESKDNLESVGIA--GN  374 (741)
T ss_dssp             EEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS------------CEEEEEECCCSSEEEEEEEE--BT
T ss_pred             EEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc------------cccEEEecCCCCeEEEEEEE--CC
Confidence            55555555555554 4888754444432   3459999987531            02222234444456677777  44


Q ss_pred             cEEEEEeCCCcEEEEecC
Q 014433          388 WVISSVAEDNILQIWQMA  405 (424)
Q Consensus       388 ~~l~s~~~dg~i~vw~~~  405 (424)
                      .++++...|+..+||.+.
T Consensus       375 ~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEe
Confidence            488898999988887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=1.8e-09  Score=108.03  Aligned_cols=208  Identities=13%  Similarity=0.119  Sum_probs=133.7

Q ss_pred             CCCceeEEEecCCCCceEEEEeC----CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC---
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSD----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---  249 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---  249 (424)
                      |...+.+++|||+++.++++.+.    ...|++||+.++..      +.. .........++|+ +++.++ .++.+   
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~------~~~-~~~~~k~~~~~Ws-Dg~~l~-y~~~~~~~  197 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP------LET-PLKDVKFSGISWL-GNEGFF-YSSYDKPD  197 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE------EEE-EEEEEESCCCEEE-TTTEEE-EEESSCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC------Ccc-ccCCceeccEEEe-CCCEEE-EEEecCcc
Confidence            45578889999999843333333    35699999988742      111 1111123678999 988776 44444   


Q ss_pred             ----------CeEEEEEcCCCCCC-CCeeeeec-cCCCeeEEEecCCCCeEEEEEeCC---CcEEEEECCCCCCcceEec
Q 014433          250 ----------QYLLIWDLRTPSVS-KPVQSVVA-HQSEVNCLAFNPFNEWILATGSTD---KTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       250 ----------g~i~i~d~~~~~~~-~~~~~~~~-~~~~v~~v~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~  314 (424)
                                ..|++|++.++... ..+..... +......+.|+|++++++++.+.+   ..|+++|+.+.......+.
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence                      34999998875421 11222223 445678899999999876666533   5899999987544566666


Q ss_pred             CCCCCEEEEEEcCCCCcEEEEEECC---CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEE
Q 014433          315 SHKEEVFQVGWNPKNETILASCCLG---RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIS  391 (424)
Q Consensus       315 ~h~~~v~~~~~sp~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  391 (424)
                      .+....... |++++..+++.+..+   +.|..+++.....            .-...+..|...+.  .|++++.++++
T Consensus       278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------------~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------------AHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG------------GGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc------------cccEEEecCCCCEE--EEEEECCEEEE
Confidence            666666555 677777677666654   5788999876432            11223344544454  88899987766


Q ss_pred             EEeCCC--cEEEEecCCcc
Q 014433          392 SVAEDN--ILQIWQMAENI  408 (424)
Q Consensus       392 s~~~dg--~i~vw~~~~~~  408 (424)
                      +...++  .|++|++..+.
T Consensus       343 ~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEEETTEEEEEEECTTSCE
T ss_pred             EEEECCeeEEEEEECCCCe
Confidence            766666  68888887553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=9.6e-08  Score=87.68  Aligned_cols=232  Identities=15%  Similarity=0.089  Sum_probs=143.7

Q ss_pred             Eec--CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe------c-CCCceeEEEecCCCCceEEEEeCC--
Q 014433          132 RYM--PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR------G-HSTEGYGLSWSKFKEGHLLSGSDD--  200 (424)
Q Consensus       132 ~~~--p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~~~d--  200 (424)
                      .++  ++++.+++.|..++.|+|+|+.+.+..+      +....+.      . .......+...|++  +++++..+  
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~  159 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEE  159 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC------EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETT
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc------eeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcC
Confidence            336  7888899999999999999997633222      2222331      0 11234567778887  56666555  


Q ss_pred             ----CcEEEEeCCCCCCCCcccceeeeec--CC-ccEeeEEEecCCCcEEEEEe-------------------CCCeEEE
Q 014433          201 ----AQICLWDINAAPKNKSLEAMQIFKV--HE-GVVEDVAWHLRHEYLFGSVG-------------------DDQYLLI  254 (424)
Q Consensus       201 ----g~i~iwd~~~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~~~~s~~-------------------~dg~i~i  254 (424)
                          |.|.++|..+.+..      ..+..  .. ..-.++.|+|+++.++ +..                   ....|.+
T Consensus       160 g~~~g~v~vlD~~T~~v~------~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v  232 (462)
T 2ece_A          160 GEGPGGILMLDHYSFEPL------GKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHF  232 (462)
T ss_dssp             SCSCCEEEEECTTTCCEE------EECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred             CCCCCeEEEEECCCCeEE------EEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEE
Confidence                78999999876432      22321  11 2245688999998554 442                   3789999


Q ss_pred             EEcCCCCCCCCeeeeecc--CCCeeEE--EecCCCCeEEEEEe-----CCCcEEEEECCCCCC--cceEe--cC------
Q 014433          255 WDLRTPSVSKPVQSVVAH--QSEVNCL--AFNPFNEWILATGS-----TDKTVKLFDLRKIST--ALHTF--DS------  315 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~--~~~v~~v--~~~~~~~~~l~tg~-----~dg~i~iwd~~~~~~--~~~~~--~~------  315 (424)
                      ||+.+++.   +.++...  ......|  +|+|++++.++++-     .+++|.+|.... +.  ..+.+  ..      
T Consensus       233 ~D~~~~k~---~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~  308 (462)
T 2ece_A          233 WDLRKRKR---IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGN  308 (462)
T ss_dssp             EETTTTEE---EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSS
T ss_pred             EECCCCcE---eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCcccccc
Confidence            99987542   4444332  1233444  45999997777776     778887765543 21  00110  00      


Q ss_pred             ----------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC------------
Q 014433          316 ----------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH------------  373 (424)
Q Consensus       316 ----------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h------------  373 (424)
                                -......|.+||+++.++++.-..+.|.+||+.....           ..++....-.            
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-----------~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK-----------PVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS-----------CEEEEEEECBTTTTCBCCTTSC
T ss_pred             ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----------cEEEEEEEeCCeeccccccccc
Confidence                      0245788999999987777777789999999964321           1333222211            


Q ss_pred             --CCCcceEEeCCCCCcEEEEE
Q 014433          374 --TSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       374 --~~~v~~~~~~~~~~~~l~s~  393 (424)
                        ...-..++++|+|++++++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence              01357899999999655554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.13  E-value=3.5e-09  Score=96.45  Aligned_cols=232  Identities=8%  Similarity=-0.114  Sum_probs=136.0

Q ss_pred             EEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe----------CCCcEEE
Q 014433          140 LIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----------DDAQICL  205 (424)
Q Consensus       140 ~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~i  205 (424)
                      ++++-..++    +|.++|..+          .+.+.++.....+  .+.++|++.. ++++.          .++.|.+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t----------~~v~~~i~vG~~P--~i~~spDg~~-lyVan~~~~r~~~G~~~~~Vsv  100 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGC----------GVTLGHSLGAFLS--LAVAGHSGSD-FALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTT----------TEEEEEEEECTTC--EEEECTTSSC-EEEEEEEETTTTSSSEEEEEEE
T ss_pred             EEEECCccCCccceEEEEECCC----------CeEEEEEeCCCCC--ceEECCCCCE-EEEEcccccccccCCCCCEEEE
Confidence            455544444    888999887          4555666544444  7999999984 55554          3789999


Q ss_pred             EeCCCCCCCCcccceeeeecC-------CccEeeEEEecCCCcEEEEEeC-CCeEEE--EEcCCCCCCCCeee------e
Q 014433          206 WDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGD-DQYLLI--WDLRTPSVSKPVQS------V  269 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~s~~~-dg~i~i--~d~~~~~~~~~~~~------~  269 (424)
                      ||+.+.+..      ..+...       ......++++|+++.++++... +..+.+  +|+.+-   ..+..      .
T Consensus       101 iD~~T~~vv------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~  171 (368)
T 1mda_H          101 FDPVTFLPI------ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIH  171 (368)
T ss_dssp             ECTTTCCEE------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCE
T ss_pred             EECCCCCEE------EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEc
Confidence            999887432      333211       1245689999999988865533 467888  888650   00100      0


Q ss_pred             ec---------cCCCeeEEEe--------------------------cCCCCeEEEEEeCCCcEEEEECCCCC-CcceEe
Q 014433          270 VA---------HQSEVNCLAF--------------------------NPFNEWILATGSTDKTVKLFDLRKIS-TALHTF  313 (424)
Q Consensus       270 ~~---------~~~~v~~v~~--------------------------~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~  313 (424)
                      ..         ..+.+..+..                          .+++..++ ..+. +.|.+.|+.... ..+..+
T Consensus       172 p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCCEEECCC
T ss_pred             cCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcceEEEEE
Confidence            00         0001111111                          22233222 2223 667777765311 111111


Q ss_pred             cC-------C---CCCEEEEEEcCCCCcEEEEEE-C-------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCC
Q 014433          314 DS-------H---KEEVFQVGWNPKNETILASCC-L-------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS  375 (424)
Q Consensus       314 ~~-------h---~~~v~~~~~sp~~~~~l~s~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  375 (424)
                      ..       +   ......++++|+++.++++.. .       ++.+.++|+.+.+..              ..+.... 
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv--------------~~i~vg~-  314 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS--------------GPISNGH-  314 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE--------------ECCEEEE-
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE--------------EEEECCC-
Confidence            11       0   011122789999987666544 2       235669999886432              2221111 


Q ss_pred             CcceEEeCCCCCcEEEEEe-CCCcEEEEecCCccCC
Q 014433          376 KISDFSWNPCEDWVISSVA-EDNILQIWQMAENIYH  410 (424)
Q Consensus       376 ~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~  410 (424)
                      ....++|+|++++++++.. .++.|.|+|+.+..+.
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            4789999999987888888 6999999999988654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=5.8e-08  Score=87.63  Aligned_cols=197  Identities=10%  Similarity=0.020  Sum_probs=127.2

Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      ..+..|+|++..++++...++.|..||..++..       ..+. ....+.+++|++++. ++++ +. ..|.+||..++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-------~~~~-~~~~v~~i~~~~dg~-l~v~-~~-~gl~~~d~~~g  119 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-------TVHA-LPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATG  119 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------EEEE-CSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-------EEEE-CCCcceEEEEeCCCe-EEEE-EC-CCEEEEECCCC
Confidence            467889998766777777889999999876421       1122 346799999999986 4433 34 45999998776


Q ss_pred             CCCCCeeeeecc-----CCCeeEEEecCCCCeEEEEEeC------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC
Q 014433          261 SVSKPVQSVVAH-----QSEVNCLAFNPFNEWILATGST------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       261 ~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      ..    ..+...     ...++.++++|+|. ++++...      .+.|..+|  . ++. ..+..+......++|+|++
T Consensus       120 ~~----~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~-~~~~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          120 VL----TLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKV-TKLFADISIPNSICFSPDG  190 (326)
T ss_dssp             CE----EEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEE-EEEEEEESSEEEEEECTTS
T ss_pred             cE----EEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcE-EEeeCCCcccCCeEEcCCC
Confidence            52    222111     23588999999998 4444332      24566666  3 332 2232233457899999999


Q ss_pred             CcEEEEEECCCeEEEeeCC--CC-CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          330 ETILASCCLGRRLMVWDLS--RI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      +.++++.+.++.|.+|++.  .+ .. .        ....+..+.........++++++|. +.++...++.|.+|+...
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~-~--------~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g  260 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPT-G--------KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG  260 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBS-S--------CCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcc-c--------CceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC
Confidence            7656666667899999985  32 11 0        0122333333344567899999998 666666678899999854


Q ss_pred             c
Q 014433          407 N  407 (424)
Q Consensus       407 ~  407 (424)
                      .
T Consensus       261 ~  261 (326)
T 2ghs_A          261 N  261 (326)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=8.4e-08  Score=88.10  Aligned_cols=205  Identities=12%  Similarity=-0.018  Sum_probs=127.7

Q ss_pred             ceeEEEecCCCCcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          127 EVNRARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ....++|+|+++.++++... ++.|.++| .+          .+.... +. ...   ++.+.|.+...+++.+.||.+.
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t----------~~~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~  190 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QG----------GSSDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CC----------CCEEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEE
Confidence            35579999999865555433 57899999 76          232333 22 111   2455666766778888899999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCcc-EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----------cC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------HQ  273 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~  273 (424)
                      +++. +++..........+ ....+ .....+.+++..++.+. ..+.+.+.|+..... ..+..+..          ..
T Consensus       191 ~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~-~v~~~~~~~~~~~~~~~~~p  266 (373)
T 2mad_H          191 KTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA-TNKAPIDALSGGRKADTWRP  266 (373)
T ss_pred             EEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc-eEeeeeeecCCcccccceec
Confidence            9999 65332111000001 11122 22345666665555443 678999999976431 11111110          12


Q ss_pred             CCeeEEEecCCCCeEEEEEe---------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-CCCeEE
Q 014433          274 SEVNCLAFNPFNEWILATGS---------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLM  343 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-~dg~i~  343 (424)
                      .....++++|++..++++..         ..+.|.++|+.+ .+.+.++.. .....+++|+|+++.+++++. .++.|.
T Consensus       267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            23445788999887665543         235799999998 677777754 446899999999974666666 589999


Q ss_pred             EeeCCCCCc
Q 014433          344 VWDLSRIDE  352 (424)
Q Consensus       344 iwd~~~~~~  352 (424)
                      ++|+.+.+.
T Consensus       345 ViD~~t~~v  353 (373)
T 2mad_H          345 IYDAGAGDQ  353 (373)
T ss_pred             EEECCCCCE
Confidence            999988653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=8.1e-07  Score=77.51  Aligned_cols=223  Identities=8%  Similarity=0.044  Sum_probs=143.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .+..++|.|++..++++-...+.|.+++....          .....+........++++.+.+..++++-...+.|.++
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~----------~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~  106 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCC----------CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence            57789999977767777777889999998751          11222222234678999998766455555667899999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC--CCeEEEEEcCCCCCCCCeeee-eccCCCeeEEEecC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNP  283 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~~~  283 (424)
                      ++.....    .  ............++++|++..++++...  .+.|..+++....    ...+ ...-.....+++++
T Consensus       107 ~~~g~~~----~--~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A          107 KMDGTQR----R--VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTSCSC----E--EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEEEEET
T ss_pred             EcCCCCE----E--EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEECCCCCCcEEEEcC
Confidence            9864321    1  1111112457899999977777766544  4788888886432    1222 12234678999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      ++.+++++-...+.|.++|+.. ......+.. ......++..  +..++++....+.|.++|..++             
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-------------  239 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-------------  239 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTE-EEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-------------
T ss_pred             CCCEEEEEECCCCEEEEEecCC-CceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-------------
Confidence            8887777777788999999875 222222222 2344667664  4456666666789999998764             


Q ss_pred             CeeeEEEcCC-CCCcceEEeCCCCC
Q 014433          364 PELLFIHGGH-TSKISDFSWNPCED  387 (424)
Q Consensus       364 ~~~~~~~~~h-~~~v~~~~~~~~~~  387 (424)
                       ..+..+... ......+++.|++.
T Consensus       240 -~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          240 -KEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             -EEEEEECCSSCCCCCCEEEECSCC
T ss_pred             -CceEEEccccccccceeeecCccC
Confidence             333333322 22367778877754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=8.3e-07  Score=77.45  Aligned_cols=229  Identities=7%  Similarity=-0.030  Sum_probs=142.9

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (424)
                      +.|+.+++.......     ......+......+.+++|++.+..++++-..++.|..+++.....      ........
T Consensus        10 ~~I~~~~~~g~~~~~-----~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~   78 (267)
T 1npe_A           10 GKIERLPLERNTMKK-----TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP------TTIIRQDL   78 (267)
T ss_dssp             EEEEEEEESSSCBCG-----GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC------EEEECTTC
T ss_pred             CeEEEEEecCccccc-----ccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc------EEEEECCC
Confidence            578888887521000     0001112212235679999997765555666678999999875421      11111222


Q ss_pred             ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCC
Q 014433          228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRK  305 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~  305 (424)
                      .....+++++++..++++-...+.|.++++.....   .............++++|++.+++++...  .+.|..+++..
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            46789999998778887877888999999875331   11122222467899999977766666544  46888888764


Q ss_pred             CCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          306 ISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       306 ~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                        .....+. ..-.....++++|++..++++....+.|.++++....              ......+ ......++.. 
T Consensus       156 --~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--------------~~~~~~~-~~~P~gi~~d-  217 (267)
T 1npe_A          156 --TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--------------RRKVLEG-LQYPFAVTSY-  217 (267)
T ss_dssp             --CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--------------EEEEEEC-CCSEEEEEEE-
T ss_pred             --CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--------------eEEEecC-CCCceEEEEe-
Confidence              2222222 2234678999999877677777778899999987521              1111122 1223566654 


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCccC
Q 014433          385 CEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                       +.+++++....+.|.+++..++..
T Consensus       218 -~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          218 -GKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             -TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCCc
Confidence             454677766778999999987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=1e-07  Score=82.14  Aligned_cols=208  Identities=14%  Similarity=0.122  Sum_probs=140.4

Q ss_pred             cEEEEEEeccCCc--eeEEEecCCCCcEEEEEeC--CCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCceeEEEecCC
Q 014433          115 KVQIIQQINHDGE--VNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSKF  189 (424)
Q Consensus       115 ~~~~~~~~~h~~~--v~~~~~~p~~~~~latg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~  189 (424)
                      ..+++..+.|...  ...++|+|++. ++++.+.  ++.|+++|..+          .+....+.- .......+++.  
T Consensus         8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~t----------g~v~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A            8 IVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQT----------GKVENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTT----------CCEEEEEECCTTCCEEEEEEE--
T ss_pred             CceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCC----------CCEEEEEecCCCcceEEEEEe--
Confidence            5678889999865  57999999864 5555443  57999999987          333444331 11122345554  


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      +..+.++.-.++.+.++|..+.+.      +..+.....  ....+++++..++++- .++.|.++|..+.+.   +..+
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v------~~~i~~g~~--~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v---~~~I  142 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSN------IKNFTHQMK--DGWGLATDGKILYGSD-GTSILYEIDPHTFKL---IKKH  142 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEE------EEEEECCSS--SCCEEEECSSSEEEEC-SSSEEEEECTTTCCE---EEEE
T ss_pred             CCEEEEEEecCCEEEEEECCCCcE------EEEEECCCC--CeEEEEECCCEEEEEC-CCCeEEEEECCCCcE---EEEE
Confidence            444556666789999999976532      333321111  1234556788888654 688999999988664   3333


Q ss_pred             ec--cC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-------------CCCEEEEEEcCCCCc
Q 014433          270 VA--HQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-------------KEEVFQVGWNPKNET  331 (424)
Q Consensus       270 ~~--~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~  331 (424)
                      .-  ..   ..++.+.|. ++ .+++....++.|.+.|..+ ++.+..+...             ....+.++|+|+++.
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~  219 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR  219 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred             EECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence            21  11   236778887 55 4676666788999999998 6777766532             135689999999988


Q ss_pred             EEEEEECCCeEEEeeCCCC
Q 014433          332 ILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~  350 (424)
                      +++++...+.+...++...
T Consensus       220 lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          220 IFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTCSEEEEEEEEEC
T ss_pred             EEEECCCCCeEEEEEEecc
Confidence            9999989999999888653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.02  E-value=2.6e-08  Score=90.71  Aligned_cols=213  Identities=9%  Similarity=-0.095  Sum_probs=122.2

Q ss_pred             EEEEeccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCce
Q 014433          118 IIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STEG  181 (424)
Q Consensus       118 ~~~~~~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v  181 (424)
                      ++.++.-.... .+.++|+++.+.++..         .++.|.+||..+          .+...++...       ....
T Consensus        58 v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T----------~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           58 TLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT----------CCEEEEEEETTSCSCCBSCCT
T ss_pred             EEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC----------CCEEEEEECCCccccccCCCc
Confidence            34444333233 7999999986665542         468999999988          4555665432       1346


Q ss_pred             eEEEecCCCCceEEEEeC--CCcEEE--EeCCCCCCCCcccc---eeeeecC---------CccEeeEEE----------
Q 014433          182 YGLSWSKFKEGHLLSGSD--DAQICL--WDINAAPKNKSLEA---MQIFKVH---------EGVVEDVAW----------  235 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~---~~~~~~~---------~~~v~~~~~----------  235 (424)
                      ..++++|+++ +++++..  +..|.+  +|+.+   ...+..   ......+         .+.+..+..          
T Consensus       127 ~~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v  202 (368)
T 1mda_H          127 HIIGNCASSA-CLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             TSEEECTTSS-CEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             ceEEEcCCCC-EEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence            7899999998 5666653  467888  88854   111100   0000000         000000000          


Q ss_pred             ----------------ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----------cCCCeeEEEecCCCCeEE
Q 014433          236 ----------------HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------HQSEVNCLAFNPFNEWIL  289 (424)
Q Consensus       236 ----------------~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~~l  289 (424)
                                      .+++..++ ..+. +.+.+.|+..... +.+..+..          .......++++|++.+++
T Consensus       203 ~~~~t~~i~vg~~P~~~~~~~~~~-~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly  279 (368)
T 1mda_H          203 GAQCTGAQNCSSQAAQANYPGMLV-WAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEE-ECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             EEEeeeeeeCCCCccccccCCEEE-EEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence                            22222222 2222 5566666543211 00000000          011122268999998766


Q ss_pred             EEEe-C-------CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-CCCeEEEeeCCCC
Q 014433          290 ATGS-T-------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLMVWDLSRI  350 (424)
Q Consensus       290 ~tg~-~-------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-~dg~i~iwd~~~~  350 (424)
                      ++.. .       ++.+.++|+.+ .+.+..+... .....++|+|+++.++++.. .++.|.++|+.+.
T Consensus       280 V~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          280 ILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EEeccccCcccccCCCEEEEECCC-CeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            6544 2       23566999998 5667776653 36899999999987888888 6999999999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.01  E-value=3.3e-08  Score=93.90  Aligned_cols=249  Identities=10%  Similarity=0.120  Sum_probs=156.1

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEe-c-CCCCceEEEEe--------------
Q 014433          136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSW-S-KFKEGHLLSGS--------------  198 (424)
Q Consensus       136 ~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-~-~~~~~~l~s~~--------------  198 (424)
                      +|+.++++...++.|.+.|+.+          .+....+. .....+..+++ . |++. ++++++              
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t----------~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDV----------MKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT----------TEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTT
T ss_pred             CCCEEEEEcCCCCEEEEEECCC----------ceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccc
Confidence            7877888777788999999988          33333222 12345778887 4 8787 566663              


Q ss_pred             ----CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-------------------------
Q 014433          199 ----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-------------------------  249 (424)
Q Consensus       199 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------------------------  249 (424)
                          .++.+.+.|..+.+      ....+.- .+....++++|+++.+++++...                         
T Consensus       169 ~~~~~~~~vtvID~~t~~------v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~  241 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWE------VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  241 (595)
T ss_dssp             CGGGEEEEEEEEETTTTE------EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             cccccCceEEEEECCCCe------EEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence                34678899987642      2222221 12456678899998887665433                         


Q ss_pred             ------------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC----------
Q 014433          250 ------------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS----------  307 (424)
Q Consensus       250 ------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~----------  307 (424)
                                  +.|.|.|.++.+....+..+.. .....++.++|+|+++++++..+.+|.++|+.+..          
T Consensus       242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             eEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                        2366777766211011223322 34567899999999988888889999999998631          


Q ss_pred             -CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC-----CCcceEE
Q 014433          308 -TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-----SKISDFS  381 (424)
Q Consensus       308 -~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~  381 (424)
                       ..+.... -......++|+|+| ...++.-.|+.|.+||+.......  ..  +.....+..+..|-     ..-.++.
T Consensus       321 ~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~--~g--~~~~~vi~kidV~yqpGh~~~~~g~t  394 (595)
T 1fwx_A          321 SAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAY--AG--EKVDPIKDKLDVHYQPGHLKTVMGET  394 (595)
T ss_dssp             GGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHH--HT--CSCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             cceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhh--cc--cccceeEEEeecccccccceeccceE
Confidence             1222333 24578899999999 677788889999999987621000  00  00013344444332     2234557


Q ss_pred             eCCCCCcEEEEEeCC-CcE-----------EEEecCCccC
Q 014433          382 WNPCEDWVISSVAED-NIL-----------QIWQMAENIY  409 (424)
Q Consensus       382 ~~~~~~~~l~s~~~d-g~i-----------~vw~~~~~~~  409 (424)
                      ++|+|++++++.... .++           +++|++.+.+
T Consensus       395 ~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          395 LDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             TTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             eCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            789999766554432 234           8899876654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.97  E-value=1.6e-07  Score=85.52  Aligned_cols=244  Identities=10%  Similarity=0.020  Sum_probs=145.6

Q ss_pred             EEecCCCCcEEEEEeC----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe--------
Q 014433          131 ARYMPQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--------  198 (424)
Q Consensus       131 ~~~~p~~~~~latg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--------  198 (424)
                      ....|++..++++-..    ++.|.++|..+          .+.+..+.....+  .++++|+++. ++++.        
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----------~~v~~~I~vG~~P--~va~spDG~~-lyVan~~~~r~~~  104 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA----------GRVIGMIDGGFLP--NPVVADDGSF-IAHASTVFSRIAR  104 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTT----------TEEEEEEEECSSC--EEEECTTSSC-EEEEEEEEEETTE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCC----------CeEEEEEECCCCC--cEEECCCCCE-EEEEccccccccc
Confidence            3446777766665443    67999999987          4445555544444  4999999985 55543        


Q ss_pred             --CCCcEEEEeCCCCCCCCcccceeeeecC-------CccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeee
Q 014433          199 --DDAQICLWDINAAPKNKSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       199 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~  268 (424)
                        .++.|.+||..+.+..      ..+...       ......++++|+++.++++.. .++.|.++|+.+.+.   +..
T Consensus       105 G~~~~~VsviD~~t~~v~------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v---v~t  175 (386)
T 3sjl_D          105 GERTDYVEVFDPVTLLPT------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF---KRM  175 (386)
T ss_dssp             EEEEEEEEEECTTTCCEE------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEE
T ss_pred             CCCCCEEEEEECCCCeEE------EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE---EEE
Confidence              3678999999876432      222211       124667999999998886654 378999999999764   444


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec----CCCCCEE-EEEEc-CCCCcEEEEEECCCeE
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD----SHKEEVF-QVGWN-PKNETILASCCLGRRL  342 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~-~~~~s-p~~~~~l~s~~~dg~i  342 (424)
                      +.. .+   |....|.+...+++.+.||.+.+.++...++......    .-..++. ...|. ++|+ ++ -.+.+|.|
T Consensus       176 I~v-~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~-~vs~~g~V  249 (386)
T 3sjl_D          176 LDV-PD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LV-WPTYTGKI  249 (386)
T ss_dssp             EEC-CS---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EE-EEBTTSEE
T ss_pred             EEC-CC---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EE-EEeCCCEE
Confidence            432 11   1222354544577888899999999876334322211    1112222 24664 5663 33 35668999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEE----cC-CCCCcceEEeCCCCCcEEEEEeC---------CCcEEEEecCCcc
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIH----GG-HTSKISDFSWNPCEDWVISSVAE---------DNILQIWQMAENI  408 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~-h~~~v~~~~~~~~~~~~l~s~~~---------dg~i~vw~~~~~~  408 (424)
                      .+.|+..........      ..+ +..    .+ .......+++++++..++++...         .+.|.+.|+.+..
T Consensus       250 ~v~d~~~~~~~v~~~------~~~-~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          250 HQIDLSSGDAKFLPA------VEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             EEEECTTSSCEECCC------EES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EEEECCCCcceeecc------eec-cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence            999997643110000      000 000    00 11223457788988865555431         2578888988875


Q ss_pred             C
Q 014433          409 Y  409 (424)
Q Consensus       409 ~  409 (424)
                      +
T Consensus       323 v  323 (386)
T 3sjl_D          323 R  323 (386)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=9.3e-08  Score=85.36  Aligned_cols=205  Identities=12%  Similarity=0.068  Sum_probs=131.3

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      ...+........+..|+|++..++++...++.|..|+.. +.       ...+..+...+..+++++++. ++++...++
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~  107 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDAQQR-LVHCEHGRR  107 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECTTSC-EEEEETTTT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECCCCC-EEEEECCCC
Confidence            445555566678899999988677888888999999873 31       223444566789999999986 665555568


Q ss_pred             eEEEEEcCCCCCCCCeeeeec-----cCCCeeEEEecCCCCeEEEE----EeC-------------CCcEEEEECCCCCC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVA-----HQSEVNCLAFNPFNEWILAT----GST-------------DKTVKLFDLRKIST  308 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~l~t----g~~-------------dg~i~iwd~~~~~~  308 (424)
                      .|.+|+.. +.    +..+..     ....++.++++|+|. ++++    |..             .+.|..||..+ ++
T Consensus       108 ~v~~~~~~-g~----~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~  180 (305)
T 3dr2_A          108 AITRSDAD-GQ----AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SP  180 (305)
T ss_dssp             EEEEECTT-SC----EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CC
T ss_pred             EEEEECCC-CC----EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC-Cc
Confidence            89999975 33    222211     123467899999997 5665    332             24677777754 33


Q ss_pred             cceEecCCCCCEEEEEEcCCCCcEEEEEECC------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433          309 ALHTFDSHKEEVFQVGWNPKNETILASCCLG------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW  382 (424)
Q Consensus       309 ~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  382 (424)
                      ... +. .......++|+|++.. |+.+...      +.|.+|++..... .         ....+ ..........+++
T Consensus       181 ~~~-~~-~~~~p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~l-~---------~~~~~-~~~~~~~pdgi~~  246 (305)
T 3dr2_A          181 LQR-MA-DLDHPNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGAL-H---------DRRHF-ASVPDGLPDGFCV  246 (305)
T ss_dssp             CEE-EE-EESSEEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTEE-E---------EEEEE-ECCSSSCCCSEEE
T ss_pred             EEE-Ee-cCCCCcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCCc-c---------CCeEE-EECCCCCCCeEEE
Confidence            322 22 3456788999999974 4444443      6899999864320 0         00111 1112344678999


Q ss_pred             CCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          383 NPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       383 ~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +++|. +.++. .+ .|.+|+.....
T Consensus       247 d~~G~-lwv~~-~~-gv~~~~~~g~~  269 (305)
T 3dr2_A          247 DRGGW-LWSSS-GT-GVCVFDSDGQL  269 (305)
T ss_dssp             CTTSC-EEECC-SS-EEEEECTTSCE
T ss_pred             CCCCC-EEEec-CC-cEEEECCCCCE
Confidence            99998 55554 44 49999986543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.96  E-value=1.6e-07  Score=86.28  Aligned_cols=213  Identities=13%  Similarity=0.167  Sum_probs=131.9

Q ss_pred             EEec--CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee------c-CCccEeeEEEecCCCcEEEEEeCC-----
Q 014433          184 LSWS--KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK------V-HEGVVEDVAWHLRHEYLFGSVGDD-----  249 (424)
Q Consensus       184 l~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~~~s~~~d-----  249 (424)
                      ..++  ++++.+++++..++.|.++|+.+.....  +..+.+.      . .......+...|++  +++++..+     
T Consensus        87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p--~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~  162 (462)
T 2ece_A           87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP--KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEG  162 (462)
T ss_dssp             TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC--EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCS
T ss_pred             cccCCCccCCEEEEccCCCCeEEEEECCCCCCCc--eeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCC
Confidence            3446  7777667778889999999997553322  2223231      1 11245667788998  55566555     


Q ss_pred             -CeEEEEEcCCCCCCCCeeeeeccC---CCeeEEEecCCCCeEEEEEe-------------------CCCcEEEEECCCC
Q 014433          250 -QYLLIWDLRTPSVSKPVQSVVAHQ---SEVNCLAFNPFNEWILATGS-------------------TDKTVKLFDLRKI  306 (424)
Q Consensus       250 -g~i~i~d~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~l~tg~-------------------~dg~i~iwd~~~~  306 (424)
                       |.|.++|..+.+.   +..+....   ..-..+.|+|+++ .+++..                   ...+|.+||+.+ 
T Consensus       163 ~g~v~vlD~~T~~v---~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-  237 (462)
T 2ece_A          163 PGGILMLDHYSFEP---LGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-  237 (462)
T ss_dssp             CCEEEEECTTTCCE---EEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-
T ss_pred             CCeEEEEECCCCeE---EEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-
Confidence             7899999998764   44443221   2244588899998 466653                   368999999997 


Q ss_pred             CCcceEecCC--CCCEEEEEE--cCCCCcEEEEEE-----CCCeEEEeeCCCCCcc--cCCCCcC---CC-CCeeeEEEc
Q 014433          307 STALHTFDSH--KEEVFQVGW--NPKNETILASCC-----LGRRLMVWDLSRIDEE--QTPEDAE---DG-PPELLFIHG  371 (424)
Q Consensus       307 ~~~~~~~~~h--~~~v~~~~~--sp~~~~~l~s~~-----~dg~i~iwd~~~~~~~--~~~~~~~---~~-~~~~~~~~~  371 (424)
                      ++.+.++...  ......+.|  +|+++..++++-     .+++|.+|....+.-.  +......   .. -+.+...+.
T Consensus       238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence            6777777652  134455656  999987666666     7788888776532100  0000000   00 000000000


Q ss_pred             CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      +-.....++.+++++++|.++.-..+.|.++++.
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            0023478899999999877887788999999986

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.93  E-value=7.7e-08  Score=87.47  Aligned_cols=214  Identities=11%  Similarity=0.046  Sum_probs=128.1

Q ss_pred             CceeEEEecCCCCceEEEEe--CCCcEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecCCCcEEEEEeC-----CC
Q 014433          179 TEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLRHEYLFGSVGD-----DQ  250 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----dg  250 (424)
                      ..+..+++++++. ++++..  .++.++||.+..+. ...+... .....+-..+..+++++++. ++++-..     ++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence            6789999999887 677653  23435566554221 1100000 01123456899999999875 6555433     57


Q ss_pred             eEEEEEcCCCCCCCCeeeeec------cCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCCCcceEecCC-----
Q 014433          251 YLLIWDLRTPSVSKPVQSVVA------HQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFDSH-----  316 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~h-----  316 (424)
                      .|.+||+.+++.   +..+..      +...+..+++++++..++++..   .++.|.+||+.+ ++....+..|     
T Consensus        94 ~i~~~d~~tg~~---~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~~~~~~~~  169 (343)
T 2qe8_A           94 KLVAWDTLNNQL---SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQGYPGIAP  169 (343)
T ss_dssp             EEEEEETTTTEE---EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECTTCTTTSC
T ss_pred             eEEEEECCCCeE---EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEecCCCcccc
Confidence            899999987653   222221      2345689999987666666665   678999999876 3333333221     


Q ss_pred             ------------------------CCCEEEEEEcCCCCcEEEEEECCC-eEEEeeCCCCCcccCCCCcCCCCCee--eEE
Q 014433          317 ------------------------KEEVFQVGWNPKNETILASCCLGR-RLMVWDLSRIDEEQTPEDAEDGPPEL--LFI  369 (424)
Q Consensus       317 ------------------------~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~  369 (424)
                                              ...+..++|+|+++. |+.+..++ .+..++........ ..     ..+.  ...
T Consensus       170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~-~~-----~~~~~~~~~  242 (343)
T 2qe8_A          170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQ-LT-----DAELGSKIE  242 (343)
T ss_dssp             CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTT-CC-----HHHHHTTCE
T ss_pred             cccceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCC-CC-----hhhhhcceE
Confidence                                    124688999999964 55555554 45444432111000 00     0000  001


Q ss_pred             EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       370 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ..++......++++++|. ++++...++.|.+|+..++
T Consensus       243 ~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          243 RYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             EEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT
T ss_pred             ecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC
Confidence            113334567899999998 7888888999999999443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=1.5e-07  Score=87.16  Aligned_cols=249  Identities=8%  Similarity=-0.034  Sum_probs=143.3

Q ss_pred             CCCcEEEEEeCC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe----------CCC
Q 014433          136 QNPFLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----------DDA  201 (424)
Q Consensus       136 ~~~~~latg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg  201 (424)
                      ++..++++...+    +.|.++|..+          .+.+..+..-..+  .+.++|+++. |+++.          .++
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t----------~~vv~~I~vG~~P--gia~SpDgk~-lyVan~~~~~~~~G~~~~  149 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST----------GRILGMTDGGFLP--HPVAAEDGSF-FAQASTVFERIARGKRTD  149 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT----------TEEEEEEEECSSC--EEEECTTSSC-EEEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC----------CEEEEEEECCCCC--ceEECCCCCE-EEEEeccccccccCCCCC
Confidence            444455554433    7999999987          4555555544444  8999999985 55544          467


Q ss_pred             cEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          202 QICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      .|.++|..+.+....+..- ..-.........++++|++++++++... ++.|.++|+.+.+.   +..+... .   +.
T Consensus       150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv---v~~I~v~-g---~~  222 (426)
T 3c75_H          150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF---DRMLDVP-D---CY  222 (426)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEECC-S---EE
T ss_pred             EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE---EEEEEcC-C---ce
Confidence            8999999877432222100 0000012345688999999988866543 68999999998764   4443321 1   13


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcce----EecCCCCCE-EEEEEcCCCCcEEEEEECCCeEEEeeCCCCCccc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALH----TFDSHKEEV-FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~----~~~~h~~~v-~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~  354 (424)
                      ...|.+...+++.+.||.+.+.++.. ++...    .+.....++ ..+.+.+++..++ ..+..+.+.+.|+.......
T Consensus       223 ~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~-~~s~~g~V~ViD~~~~~~~v  300 (426)
T 3c75_H          223 HIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNTEVFHTEDELLINHPAFSLRSGRLV-WPTYTGKIFQADLTAEGATF  300 (426)
T ss_dssp             EEEEEETTEEEEEETTSSEEEEECCT-TCCEEEECCCCSCTTSCBCSCCEECTTTCEEE-EEBTTSEEEEEEECSSCEEE
T ss_pred             eeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEeeeeeccCCCceeeEeeecCCCCEEE-EEeCCCcEEEEeccCCceEE
Confidence            34455545677777888888888843 33332    122212222 2457888887544 44567899999986532110


Q ss_pred             CCCCc-CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe---------CCCcEEEEecCCccC
Q 014433          355 TPEDA-EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA---------EDNILQIWQMAENIY  409 (424)
Q Consensus       355 ~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~  409 (424)
                      ..... ..........   .......++++|+++.++++..         .++.|.+.|+.+...
T Consensus       301 ~~~~~~~~~~~i~~g~---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv  362 (426)
T 3c75_H          301 RAPIEALTEAERADDW---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER  362 (426)
T ss_dssp             CCCEESSCTTTGGGTE---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eeeeeecccccccccc---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence            00000 0000000000   0111234789999886666543         135799999988754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=99.89  Aligned_cols=179  Identities=11%  Similarity=0.037  Sum_probs=95.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .+++++.||.|+.||..+          .+....+..  ..+.+..+..++. ++++++.||.|+.||..+++....+. 
T Consensus        11 ~v~~gs~dg~v~a~d~~t----------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~-   76 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRT----------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLP-   76 (369)
T ss_dssp             EEEEEETTSEEEEEETTT----------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECS-
T ss_pred             EEEEEcCCCEEEEEECCC----------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeee-
Confidence            688889999999999887          444555554  4555555555555 67778899999999998775432221 


Q ss_pred             eeeeecCC-ccEe-eEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014433          220 MQIFKVHE-GVVE-DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT  297 (424)
Q Consensus       220 ~~~~~~~~-~~v~-~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~  297 (424)
                           .+. ..+. ...+. .+. .+++++.++.|+.||.++++..   ..+..+.    ...++|.+. .+++++.++.
T Consensus        77 -----~~~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~---w~~~~~~----~~~~~p~~~-~v~~~~~dg~  141 (369)
T 2hz6_A           77 -----FTIPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQ---QTLSSAF----ADSLSPSTS-LLYLGRTEYT  141 (369)
T ss_dssp             -----CCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEE
T ss_pred             -----ccCccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEE---EEecCCC----cccccccCC-EEEEEecCCE
Confidence                 111 0110 01111 233 3457788999999999988752   2222222    234556666 5788888999


Q ss_pred             EEEEECCCCCCcceEecCCCCCEEEEEEcCCC---CcEEEEEECCCeEEEeeCCCCC
Q 014433          298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKN---ETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       298 i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |+.||.++ ++.+..+..+.  ....++.++.   . .+++++.||.|..||..++.
T Consensus       142 v~a~d~~t-G~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          142 ITMYDTKT-RELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EECCCSSS-SSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCC
T ss_pred             EEEEECCC-CCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCCCc
Confidence            99999998 55554443211  1223333321   2 36678899999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=6.6e-07  Score=76.21  Aligned_cols=195  Identities=15%  Similarity=0.208  Sum_probs=125.3

Q ss_pred             CcEEEEEEeccCCce--eEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC
Q 014433          114 GKVQIIQQINHDGEV--NRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF  189 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v--~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  189 (424)
                      ...++++.++|....  ..+.|+ ++ .++.+.+.+|  .|+++|+.+          .+....+.-. .........+.
T Consensus        29 ~~~~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T----------gkv~~~~~l~-~~~FgeGit~~   95 (262)
T 3nol_A           29 YDYQIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES----------GKTLQQIELG-KRYFGEGISDW   95 (262)
T ss_dssp             EEEEEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT----------CCEEEEEECC-TTCCEEEEEEE
T ss_pred             cceEEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC----------CcEEEEEecC-CccceeEEEEe
Confidence            357888899998665  889998 45 4666666666  899999987          3434444322 23333222233


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee
Q 014433          190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       190 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      +..+.++.-.++.+.++|..+.+.      +..+.. ...-..+  ++++..++++- .++.|.++|..+.+.   +..+
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~~------~~ti~~-~~eG~gl--t~dg~~L~~Sd-Gs~~i~~iDp~T~~v---~~~I  162 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLRQ------VRSFNY-DGEGWGL--THNDQYLIMSD-GTPVLRFLDPESLTP---VRTI  162 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCE------EEEEEC-SSCCCCE--EECSSCEEECC-SSSEEEEECTTTCSE---EEEE
T ss_pred             CCEEEEEEeeCCEEEEEECccCcE------EEEEEC-CCCceEE--ecCCCEEEEEC-CCCeEEEEcCCCCeE---EEEE
Confidence            554555566789999999987643      333332 1222334  45677777554 478899999998664   3333


Q ss_pred             ec--cC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC------------CCCEEEEEEcCCCCcE
Q 014433          270 VA--HQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH------------KEEVFQVGWNPKNETI  332 (424)
Q Consensus       270 ~~--~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h------------~~~v~~~~~sp~~~~~  332 (424)
                      ..  ..   ..++-+.|. +|. +++..-.+..|.+.|.++ ++.+..+...            ..-.+.|+|+|+++.+
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             EeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            22  12   334557776 454 676666788999999998 6666665532            2356899999998877


Q ss_pred             EEEEE
Q 014433          333 LASCC  337 (424)
Q Consensus       333 l~s~~  337 (424)
                      +++|-
T Consensus       240 fVTGK  244 (262)
T 3nol_A          240 FVTGK  244 (262)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            77663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=8.5e-07  Score=79.75  Aligned_cols=218  Identities=9%  Similarity=-0.003  Sum_probs=138.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .+..++.++.|..+|...           ........+...+.++...+++.  +..++.++.|..+|.. +..      
T Consensus       109 ~l~v~t~~~~l~~~d~~g-----------~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~------  168 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTDG-----------TEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTE------  168 (330)
T ss_dssp             EEEEECTTSEEEEECTTS-----------CEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCE------
T ss_pred             EEEEEecCCEEEEEcCCC-----------CEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCE------
Confidence            466677888999998752           22333444444556666665554  7778888999999987 422      


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                      ...+......+.++...+++. ++ .++  +.|..+| .++..   +.........+.++...+++.  |..++.++.|.
T Consensus       169 ~~~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~  238 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTE---KWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLY  238 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCE---EEEECCSSCCCSCCEECTTSC--EEEEETTTEEE
T ss_pred             eEEEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcE---EEEEccCCcceeceEECCCCe--EEEEcCCCeEE
Confidence            222333345667777776665 44 444  8899999 55442   334444456688888888775  56677788888


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      .+|..  +..+..+......+..+...+++.  |..++.+|.|..+|. .+              ..+..+......+.+
T Consensus       239 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g--------------~~~~~~~~~~~~~~~  299 (330)
T 3hxj_A          239 AINPD--GTEKWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DG--------------TEKWNFETGSWIIAT  299 (330)
T ss_dssp             EECTT--SCEEEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TS--------------CEEEEEECSSCCCSC
T ss_pred             EECCC--CCEeEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CC--------------cEEEEEEcCCccccc
Confidence            88743  455555554444455566666663  667788888999985 32              223333334456778


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +...+++.  |..++.+|.+++.......
T Consensus       300 ~~~d~~g~--l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          300 PVIDENGT--IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             CEECTTCC--EEEECTTSCEEEEEC----
T ss_pred             eEEcCCCE--EEEEcCCCeEEEEeccccc
Confidence            88888887  4456889999988766543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.85  E-value=5.8e-06  Score=74.24  Aligned_cols=241  Identities=7%  Similarity=-0.033  Sum_probs=141.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--------------------CCCceeEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--------------------HSTEGYGLS  185 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------------------h~~~v~~l~  185 (424)
                      ....+++|.+++. ++.++..++.|..|+....           ....+..                    ....+.+++
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~   86 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNS-----------GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS   86 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTT-----------CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCC-----------ceEEEecccccccccccccccchhccccCCCCceEE
Confidence            3466788999875 5667788899999987641           1111210                    113478899


Q ss_pred             ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee-eec-CCccEeeEEEec-CCCcEEEEEeC--------------
Q 014433          186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKV-HEGVVEDVAWHL-RHEYLFGSVGD--------------  248 (424)
Q Consensus       186 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~~~~s~~~--------------  248 (424)
                      +.+.+. .|+.+...+.|..+|..++..    ..+.. ..+ .....+.+++.+ ++. ++++...              
T Consensus        87 ~~~~~g-~l~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           87 YNLQNN-QLYIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             EETTTT-EEEEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHH
T ss_pred             EcCCCC-cEEEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcc
Confidence            987333 366665555688888764321    11111 110 113478899999 875 5545322              


Q ss_pred             ---CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceEecCCCCCEEEEE
Q 014433          249 ---DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVG  324 (424)
Q Consensus       249 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~  324 (424)
                         ++.|..+|..++..    ..+.......+.|+++|++..++++-...+.|.+|++.... .....+....+ ...++
T Consensus       161 ~~~~g~v~~~d~~~~~~----~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKET----TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             TCCCEEEEEEETTTTEE----EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             cCCCceEEEEeCCCCEE----EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence               36788888765442    22212223457799999988666665667899999987421 11112211223 78899


Q ss_pred             EcCCCCcEEEEEEC----------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC----CCCcceEEeCCCCCcEE
Q 014433          325 WNPKNETILASCCL----------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH----TSKISDFSWNPCEDWVI  390 (424)
Q Consensus       325 ~sp~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l  390 (424)
                      +.++|. ++++...          .+.|..+|...               ..+..+...    ...++.+++ .++. |+
T Consensus       236 ~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G---------------~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~  297 (322)
T 2fp8_A          236 RNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG---------------NILEVIPLPPPFAGEHFEQIQE-HDGL-LY  297 (322)
T ss_dssp             ECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS---------------CEEEEEECCTTTTTSCCCEEEE-ETTE-EE
T ss_pred             ECCCCC-EEEEecCcccccccCCCccEEEEECCCC---------------CEEEEEECCCCCccccceEEEE-eCCE-EE
Confidence            999996 5555443          35677777532               223223221    234666766 3455 77


Q ss_pred             EEEeCCCcEEEEecCCc
Q 014433          391 SSVAEDNILQIWQMAEN  407 (424)
Q Consensus       391 ~s~~~dg~i~vw~~~~~  407 (424)
                      ++....+.|.++++...
T Consensus       298 v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          298 IGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EECSSCSEEEEEEC---
T ss_pred             EeecCCCceEEEecccc
Confidence            77777889999988643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.84  E-value=2.8e-05  Score=70.53  Aligned_cols=241  Identities=9%  Similarity=-0.014  Sum_probs=148.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      +..+|.+..+ .+.++++  ....|+..++..           .....+......+.+++|.+.+..++++-...+.|..
T Consensus        34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g-----------~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r   99 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHR-----------SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR   99 (349)
T ss_dssp             TSSCEEESSS-CCEEEEE--CBSCEEEECTTS-----------CCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCccccccc-CceeEee--cccceEEEeCCC-----------CeeEEeecCCCceEEEEEeccccEEEEEeccCCceEE
Confidence            3445556555 3334433  334577777764           1122333334457899999876645555556788999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      +++.....      .............+++.+.+..++.+-...+.|.+.++.....   .......-.....++++|.+
T Consensus       100 ~~~~g~~~------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l~~P~~iavdp~~  170 (349)
T 3v64_C          100 ANLNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPME  170 (349)
T ss_dssp             EETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTCSCEEEEEEETTT
T ss_pred             EecCCCCc------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCCCCcceEEEecCc
Confidence            99875431      1111112234578999987778887877788999999875432   22222333567899999987


Q ss_pred             CeEEEEEeCC-CcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          286 EWILATGSTD-KTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       286 ~~~l~tg~~d-g~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      ..++++-... +.|..+++..  .....+ ...-...+.++++|++..++++-...+.|..+++.....           
T Consensus       171 g~ly~td~~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-----------  237 (349)
T 3v64_C          171 GTIYWTDWGNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-----------  237 (349)
T ss_dssp             TEEEEEECSSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------
T ss_pred             CeEEEeccCCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-----------
Confidence            7777776666 7899998874  222332 222346789999998776777766778899999864211           


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       .  ...........++++. .+ .++++-...+.|...+..++
T Consensus       238 -~--~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          238 -K--AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             -E--EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred             -E--EEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCC
Confidence             1  1112223345667773 33 36667666777777774333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.82  E-value=2.8e-05  Score=69.50  Aligned_cols=229  Identities=8%  Similarity=-0.025  Sum_probs=141.0

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      ...|+..++..          .. ...+......+.+++|++.+..++++-...+.|..+++........  ....+...
T Consensus         9 ~~~I~~i~~~~----------~~-~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~--~~~~~~~~   75 (316)
T 1ijq_A            9 RHEVRKMTLDR----------SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRD   75 (316)
T ss_dssp             BSSEEEEETTS----------CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSS
T ss_pred             CCeEEEEECCC----------cc-eEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc--cEEEEeCC
Confidence            35688889876          12 2223334456789999987765555656678999999875210000  01112112


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-CcEEEEECCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-KTVKLFDLRK  305 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-g~i~iwd~~~  305 (424)
                      -.....+++.+.+..++++-...+.|.++|+.....   .............++++|.+.+++++.... +.|..+++..
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce---EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            235678999887777887777889999999875331   112222345678999999877666665444 7888888764


Q ss_pred             CCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          306 ISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       306 ~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                        .....+ ...-.....++++|++..++++-+..+.|..+|+.....            ..+...........++++. 
T Consensus       153 --~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~------------~~~~~~~~~~~~P~giav~-  217 (316)
T 1ijq_A          153 --VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVF-  217 (316)
T ss_dssp             --CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEECTTTTSSEEEEEEE-
T ss_pred             --CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce------------EEEeecCCccCCcEEEEEE-
Confidence              333332 222356789999998776666766778999999864211            2222211222345677774 


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCc
Q 014433          385 CEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      .+ .++++-...+.|..++..++
T Consensus       218 ~~-~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          218 ED-KVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TT-EEEEEETTTTEEEEEETTTC
T ss_pred             CC-EEEEEECCCCeEEEEeCCCC
Confidence            23 46777777788888887544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.82  E-value=5.9e-07  Score=76.47  Aligned_cols=191  Identities=13%  Similarity=0.097  Sum_probs=126.5

Q ss_pred             cEEEEEEeccCCce--eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCcee--EEEecCCC
Q 014433          115 KVQIIQQINHDGEV--NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY--GLSWSKFK  190 (424)
Q Consensus       115 ~~~~~~~~~h~~~v--~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~  190 (424)
                      ..++++.+.|...-  ..+.|+.  ..+..+.+.+|.|+++|+.+          .+....+.  .....  +++..  +
T Consensus        42 ~~~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~T----------gkv~~~~l--~~~~FgeGit~~--g  105 (268)
T 3nok_A           42 VAHIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLES----------AQPVWMER--LGNIFAEGLASD--G  105 (268)
T ss_dssp             EEEEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSC----------SSCSEEEE--CTTCCEEEEEEC--S
T ss_pred             ceEEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCC----------CcEEeEEC--CCCcceeEEEEe--C
Confidence            45788888888655  6888874  45788888889999999987          33344441  22333  35543  4


Q ss_pred             CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       191 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      ..+.++.-.++.+.+||..+.+.      +..+.. ...-..++  +++..++++- .++.|.++|..+.+.   +..+.
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~Tl~~------~~ti~~-~~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v---~~~I~  172 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMPPQR------ERTTRY-SGEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFAL---VGAVQ  172 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTTTEE------EEEEEC-SSCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCE---EEEEE
T ss_pred             CEEEEEEccCCEEEEEECCcCcE------EEEEeC-CCceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeE---EEEEE
Confidence            54566666789999999977633      333332 22234555  4566677554 588999999998664   33332


Q ss_pred             c--cC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-------------CCCEEEEEEcCCCCcE
Q 014433          271 A--HQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-------------KEEVFQVGWNPKNETI  332 (424)
Q Consensus       271 ~--~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~~  332 (424)
                      -  +.   ..++-+.|. +|. +++..-.+..|.+.|.++ ++.+..+...             ..-.+.|+|+|+++.+
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             eCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCC-CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence            2  22   234667776 464 666666788999999998 6666655431             2356899999998888


Q ss_pred             EEEEE
Q 014433          333 LASCC  337 (424)
Q Consensus       333 l~s~~  337 (424)
                      ++||-
T Consensus       250 fVTGK  254 (268)
T 3nok_A          250 FMTGK  254 (268)
T ss_dssp             EEEET
T ss_pred             EEeCC
Confidence            87763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.80  E-value=1.6e-05  Score=73.28  Aligned_cols=240  Identities=9%  Similarity=-0.025  Sum_probs=148.5

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      -.|.+..+ ...++++  ....|+..++..           .....+......+.+++|.+.+..++++-...+.|..++
T Consensus        79 ~~C~~~~~-~~~l~~~--~~~~I~~i~~~~-----------~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~  144 (386)
T 3v65_B           79 RSCKALGP-EPVLLFA--NRIDIRQVLPHR-----------SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN  144 (386)
T ss_dssp             SCEEECSS-CCEEEEE--CBSCEEEECTTS-----------CCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CeECCccc-cceeEee--cCccceeeccCC-----------CcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe
Confidence            34555445 3333333  345688888765           112333334456789999987665555555678899999


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                      +.....      .............+++.+.+..++++-...+.|.+.++.....   .......-.....|+++|.+.+
T Consensus       145 ~~g~~~------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          145 LNGSNV------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             TTSCCE------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEECSSCSCEEEEEEETTTTE
T ss_pred             cCCCCc------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEeecCCCCCCcEEEEEcCCCe
Confidence            875421      1111212235578899987778887877788899988875331   2222233356789999998887


Q ss_pred             EEEEEeCC-CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCee
Q 014433          288 ILATGSTD-KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL  366 (424)
Q Consensus       288 ~l~tg~~d-g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  366 (424)
                      ++++-... +.|..+++.. ..........-...+.|+|+|++..++++-+..+.|..+++.....            . 
T Consensus       216 ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~-  281 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------K-  281 (386)
T ss_dssp             EEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------E-
T ss_pred             EEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------E-
Confidence            77766555 7888888874 2222222223345789999987777777777778899999764211            1 


Q ss_pred             eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       ...........++++. .+ .++++-...+.|..++..++
T Consensus       282 -~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          282 -AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             -EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred             -EEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCC
Confidence             1112223345677773 33 36777777788888874443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.78  E-value=5.7e-07  Score=77.51  Aligned_cols=196  Identities=9%  Similarity=-0.002  Sum_probs=129.1

Q ss_pred             eeEEEecCCCCceEEEEeC--CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          181 GYGLSWSKFKEGHLLSGSD--DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ..++.|++++. ++++.+.  ++.|.++|+.+++....+.    +..+ .....+++.  +..++++.-.++.+.++|..
T Consensus        23 ~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           23 TQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK----MDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             EEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE----CCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             cccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe----cCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            57999998753 4444433  6899999998875422211    1111 122345554  55788787789999999999


Q ss_pred             CCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-----CCEEEEEEcCCCCcEE
Q 014433          259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-----EEVFQVGWNPKNETIL  333 (424)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~~l  333 (424)
                      +.+.   +..+......-..  +++++..++++ ..++.|.++|..+ .+.+..+....     ..++.+.|. ++ .++
T Consensus        95 t~~v---~~~i~~g~~~g~g--lt~Dg~~l~vs-~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ly  165 (266)
T 2iwa_A           95 TLSN---IKNFTHQMKDGWG--LATDGKILYGS-DGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVW  165 (266)
T ss_dssp             TTEE---EEEEECCSSSCCE--EEECSSSEEEE-CSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEE
T ss_pred             CCcE---EEEEECCCCCeEE--EEECCCEEEEE-CCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CC-EEE
Confidence            8654   4444322122233  44567766655 4688999999988 45555554321     246788888 56 466


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC-------------CCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-------------HTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      +....++.|.+.|..++..              +..+.-             .....+.++|+|+++.+++++...+.|.
T Consensus       166 vn~~~~~~V~vID~~tg~V--------------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTL--------------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             EEETTSSEEEEEETTTCCE--------------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             EecCCCCeEEEEECCCCcE--------------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            6666688999999988643              222211             0124589999999988899998999999


Q ss_pred             EEecCCc
Q 014433          401 IWQMAEN  407 (424)
Q Consensus       401 vw~~~~~  407 (424)
                      +-++...
T Consensus       232 ~i~l~~~  238 (266)
T 2iwa_A          232 EIKLHLV  238 (266)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            9988764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.76  E-value=5.1e-09  Score=96.26  Aligned_cols=180  Identities=12%  Similarity=-0.015  Sum_probs=90.8

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      .+++++.||.|..||..+++...      .+..  +.+.+..+..++. ++++++.||.|+.||..+++.   +.....+
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~W------~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~---~w~~~~~   78 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIKW------TLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEG---LTKLPFT   78 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE------EEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CC---SEECSCC
T ss_pred             EEEEEcCCCEEEEEECCCCCEEE------EecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCce---eeeeecc
Confidence            79999999999999998885432      2222  3444444445554 555778999999999988764   2222111


Q ss_pred             C-CCee-EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          273 Q-SEVN-CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       273 ~-~~v~-~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      . ..+. +..+. .+. .+++|+.++.|+.||.++ ++.+..+..+.    ...++|.+. .+++++.|+.|+.||.+++
T Consensus        79 ~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           79 IPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             HHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred             CccccccCceEe-cCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCC
Confidence            1 0010 01111 233 477788899999999998 66666665543    234566664 6788889999999999886


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC---CcEEEEEeCCCcEEEEecCCccC
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE---DWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ...-            .+.....    ....+.++.   . .++.++.||.|+.||..++..
T Consensus       151 ~~~W------------~~~~~~~----~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          151 ELRW------------NATYFDY----AASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             SCCC------------EEEEEEE----CCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCE
T ss_pred             CEEE------------eEecccc----cCccccCCccccc-eEEEECCCCEEEEEECCCCcE
Confidence            4311            1111111    222333321   3 355678899999999987743

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.74  E-value=7e-06  Score=69.27  Aligned_cols=194  Identities=13%  Similarity=0.119  Sum_probs=124.5

Q ss_pred             CcEEEEEEeccCCc--eeEEEecCCCCcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-ceeEEEecC
Q 014433          114 GKVQIIQQINHDGE--VNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-EGYGLSWSK  188 (424)
Q Consensus       114 ~~~~~~~~~~h~~~--v~~~~~~p~~~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~  188 (424)
                      -..+++..++|...  ...+.|++ + .++.+.+..  ..|+++|+.+          .+......-... -.-+++.. 
T Consensus         7 ~~~~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t----------gkv~~~~~l~~~~fgeGi~~~-   73 (243)
T 3mbr_X            7 QGYRVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET----------GRILQRAEVPPPYFGAGIVAW-   73 (243)
T ss_dssp             CCEEEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT----------CCEEEEEECCTTCCEEEEEEE-
T ss_pred             cceEEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC----------CCEEEEEeCCCCcceeEEEEe-
Confidence            46788999999854  55999987 4 466666665  4999999987          333443332211 11234443 


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                       +..+.+..-.++.+.++|..+.+      .+..+... ..-..++  +++..++++- .++.|.++|..+.+.   +..
T Consensus        74 -~~~ly~ltw~~~~v~v~D~~tl~------~~~ti~~~-~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~---~~~  139 (243)
T 3mbr_X           74 -RDRLIQLTWRNHEGFVYDLATLT------PRARFRYP-GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQ---VGS  139 (243)
T ss_dssp             -TTEEEEEESSSSEEEEEETTTTE------EEEEEECS-SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCE---EEE
T ss_pred             -CCEEEEEEeeCCEEEEEECCcCc------EEEEEeCC-CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeE---EEE
Confidence             45456666678999999997763      33333322 2224444  5677777664 588999999998664   333


Q ss_pred             eec--cC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-------------CCCEEEEEEcCCCC
Q 014433          269 VVA--HQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-------------KEEVFQVGWNPKNE  330 (424)
Q Consensus       269 ~~~--~~---~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~  330 (424)
                      +.-  +.   ..++-+.|. +|. +++..-.+..|.+.|.++ ++.+..+...             ..-.+.|+++|.++
T Consensus       140 I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             EECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             EEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence            322  21   245566665 354 666665678999999998 6666555421             23568999999988


Q ss_pred             cEEEEEE
Q 014433          331 TILASCC  337 (424)
Q Consensus       331 ~~l~s~~  337 (424)
                      .+++||-
T Consensus       217 ~lfVTGK  223 (243)
T 3mbr_X          217 RLFVTGK  223 (243)
T ss_dssp             EEEEEET
T ss_pred             EEEEECC
Confidence            7777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.72  E-value=8.8e-05  Score=67.27  Aligned_cols=206  Identities=6%  Similarity=-0.023  Sum_probs=134.6

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....+..++|.+.+..++.+-...+.|+.++....          .....+........++++.+.+..++++-...+.|
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~----------~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I  140 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI  140 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCC----------CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeE
Confidence            34557899999877667777677889999998761          11222222234457888887666555666667899


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      .+.++.....      .......-.....++++|.+..++.+-... +.|..+++.....   .......-...+.|+++
T Consensus       141 ~~~~~dG~~~------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGla~d  211 (349)
T 3v64_C          141 EVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTID  211 (349)
T ss_dssp             EEEETTSCSC------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EESCCSSCSCEEEEEEE
T ss_pred             EEEcCCCCce------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc---EEEEECCCCCcceEEEe
Confidence            9999875421      111222334678999999888888776666 8899998875332   11111223457899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |.+..++++-...+.|..+|+.. ......+...-.....+++.  +..++.+-...+.|..++..++.
T Consensus       212 ~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          212 YAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCC-CceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCC
Confidence            98887777766778999999875 22222233334566788884  33567777778888888855544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.71  E-value=0.0001  Score=68.10  Aligned_cols=230  Identities=9%  Similarity=-0.024  Sum_probs=142.1

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      ...|+..++..           .....+......+.+|+|++.+..++.+-...+.|..+++.......  .........
T Consensus        91 ~~~I~~i~l~~-----------~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--~~~~~~~~~  157 (400)
T 3p5b_L           91 RHEVRKMTLDR-----------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--SYDTVISRD  157 (400)
T ss_dssp             TTEEEEECTTS-----------CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C--CCEEEECSS
T ss_pred             cceeEEEccCC-----------cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC--cceEEEeCC
Confidence            46888888876           12233444556788999998766445555567889999886532100  011122223


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-CCcEEEEECCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-DKTVKLFDLRK  305 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-dg~i~iwd~~~  305 (424)
                      ......+++.+.+..++.+-...+.|.+.++.....   ...+...-.....|+++|.+.+++++-.. .+.|...++..
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE---EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce---EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            356788999987777887877889999999876431   22222334557899999987766666533 47888888874


Q ss_pred             CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       306 ~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       ..........-.....|++++.+..++++-...+.|..+|+.....            ..+....+......++++.  
T Consensus       235 -~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~~~~~~~l~~P~gl~v~--  299 (400)
T 3p5b_L          235 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVF--  299 (400)
T ss_dssp             -CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC------------EEEEECSSTTSSEEEEEEE--
T ss_pred             -CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc------------EEEEeCCCCCCCCEEEEEe--
Confidence             2222222333357899999998876666666678899999864221            2222211222334566663  


Q ss_pred             CCcEEEEEeCCCcEEEEecCCc
Q 014433          386 EDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +..++.+-...+.|..++..++
T Consensus       300 ~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          300 EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCEEEEecCCCCeEEEEEcCCC
Confidence            3346777777778888875444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.69  E-value=4.4e-05  Score=70.32  Aligned_cols=206  Identities=6%  Similarity=-0.024  Sum_probs=134.4

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....+..++|.+.+..++.+-...+.|+.++...          ......+........++++.+.+..++++-...+.|
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g----------~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I  183 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG----------SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI  183 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC----------CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeE
Confidence            3456788999987766777777788999999876          111122222233456788887666555665667788


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      .+.++.....      .......-.....++++|.+..++.+-... +.|..+++.....   .......-...+.|+++
T Consensus       184 ~~~~~dg~~~------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGlavd  254 (386)
T 3v65_B          184 EVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTID  254 (386)
T ss_dssp             EECBTTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEE
T ss_pred             EEEeCCCCce------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEEEECCCCCeeeEEEe
Confidence            8888864321      111222235678999999888888776666 7899888875432   22222233457899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      |.+..++++-...+.|..+|+.. ......+.........+++..  ..++.+....+.|..++..++.
T Consensus       255 ~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~giav~~--~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          255 YAGRRMYWVDAKHHVIERANLDG-SHRKAVISQGLPHPFAITVFE--DSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             GGGTEEEEEETTTTEEEEECTTS-CSCEEEECSSCSSEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCC-CeeEEEEECCCCCceEEEEEC--CEEEEeeCCCCeEEEEECCCCc
Confidence            88887777777778999999875 232223333345667888833  3577777778889888865544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.66  E-value=6.7e-05  Score=66.67  Aligned_cols=243  Identities=7%  Similarity=0.058  Sum_probs=142.6

Q ss_pred             CCcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCc
Q 014433          113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       113 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      ....+++..+.-......++|.+++. ++++-..++.|..|+...           ... ........+.++++.+++. 
T Consensus        19 ~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g-----------~~~-~~~~~~~~p~gia~~~dG~-   84 (306)
T 2p4o_A           19 LAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG-----------NQQ-IHATVEGKVSGLAFTSNGD-   84 (306)
T ss_dssp             CCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC-----------CEE-EEEECSSEEEEEEECTTSC-
T ss_pred             CCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCC-----------ceE-EEEeCCCCceeEEEcCCCc-
Confidence            34566777776667788999999876 777766788999998764           111 1222345688999999887 


Q ss_pred             eEEEEeC-CC-cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee--
Q 014433          193 HLLSGSD-DA-QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS--  268 (424)
Q Consensus       193 ~l~s~~~-dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~--  268 (424)
                      ++++... ++ .|..++..++..    ..+.... .......++..+. ..++++-..++.|.++|...+..  .+..  
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~----~~~~~~~-~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~--~v~~~~  156 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTV----ETLLTLP-DAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSG--SIWLEH  156 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCE----EEEEECT-TCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEE--EEEEEC
T ss_pred             EEEEeccCCcceEEEEcCCCCeE----EEEEeCC-CccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcE--eEEEEC
Confidence            4544433 22 466667655421    1111111 1122344444443 34565555688999999765310  0100  


Q ss_pred             -------eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          269 -------VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       269 -------~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                             ....-...+.|  +|++.+++++-...+.|..||+...+..  ...+.. ......++++++|. ++++....
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~  232 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIY  232 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTT
T ss_pred             CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCC
Confidence                   00111234455  7778877777777889999998742211  111211 13456789999994 67666667


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC---CCCCcEEEEEe
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN---PCEDWVISSVA  394 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~  394 (424)
                      +.|.+++.. +..            ..+..........++++|.   |++..|+++.+
T Consensus       233 ~~V~~~~~~-G~~------------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          233 NSVVRIAPD-RST------------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CCEEEECTT-CCE------------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CeEEEECCC-CCE------------EEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            889999864 210            1111112223457889998   88776666654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.64  E-value=2.4e-06  Score=84.80  Aligned_cols=236  Identities=9%  Similarity=0.080  Sum_probs=138.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-C----CceeEEEecCCCCceEEEEeC------CCcEEEEeC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-S----TEGYGLSWSKFKEGHLLSGSD------DAQICLWDI  208 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~----~~v~~l~~~~~~~~~l~s~~~------dg~i~iwd~  208 (424)
                      .|.+++.++.|..+|..+          .+.+..+..+ .    ..+.+--.. .+. .++.++.      +|.|+.+|.
T Consensus       130 ~v~v~~~dg~l~alD~~t----------G~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~  197 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAAT----------GKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDA  197 (677)
T ss_dssp             EEEEECTTSEEEEEETTT----------CCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCC----------CCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEEC
Confidence            566778899999999877          3444444433 1    111110001 133 4555543      689999999


Q ss_pred             CCCCCCCcccceeee-----------------e---------cCCccEeeEEEecCCCcEEEEEeCCC------------
Q 014433          209 NAAPKNKSLEAMQIF-----------------K---------VHEGVVEDVAWHLRHEYLFGSVGDDQ------------  250 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~-----------------~---------~~~~~v~~~~~~~~~~~~~~s~~~dg------------  250 (424)
                      .+++....+......                 .         +.......+++++++..++ .+..++            
T Consensus       198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~  276 (677)
T 1kb0_A          198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKG  276 (677)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTC
T ss_pred             CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccC
Confidence            988653322110000                 0         1111224678888877554 555543            


Q ss_pred             -------eEEEEEcCCCCCCCCeeeeec--cC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcceE
Q 014433          251 -------YLLIWDLRTPSVSKPVQSVVA--HQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTALHT  312 (424)
Q Consensus       251 -------~i~i~d~~~~~~~~~~~~~~~--~~-------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~  312 (424)
                             .|..+|.++++.   +-.+..  |.       .....+....+|+  .+++.++.+|.++++|.++ ++++..
T Consensus       277 gd~~~~~sv~AlD~~TG~~---~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~  352 (677)
T 1kb0_A          277 GDNLYLASIVALDPDTGKY---KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISA  352 (677)
T ss_dssp             CCCTTTTEEEEECTTTCCE---EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEE
T ss_pred             CCCeeeEEEEEEECCCCCE---EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEecc
Confidence                   599999998874   222221  21       1222233333552  4788999999999999988 566544


Q ss_pred             ecCCC-----------CCE------------------------EEEEEcCCCCcEEEEEECC------------------
Q 014433          313 FDSHK-----------EEV------------------------FQVGWNPKNETILASCCLG------------------  339 (424)
Q Consensus       313 ~~~h~-----------~~v------------------------~~~~~sp~~~~~l~s~~~d------------------  339 (424)
                      +....           .++                        ..++++|+.. ++++...+                  
T Consensus       353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~  431 (677)
T 1kb0_A          353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGP  431 (677)
T ss_dssp             EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred             ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccc
Confidence            43211           011                        1578899876 45554332                  


Q ss_pred             -------------------------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          340 -------------------------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       340 -------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                                               |.|..||+.++              +.+..+. +...+.+..+...+. +++.++
T Consensus       432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG--------------~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~  495 (677)
T 1kb0_A          432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ--------------KAAWSVE-HVSPWNGGTLTTAGN-VVFQGT  495 (677)
T ss_dssp             TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT--------------EEEEEEE-ESSSCCCCEEEETTT-EEEEEC
T ss_pred             cccccccccccccccccccCCCCCccEEEEEeCCCC--------------cEEeecC-CCCCCcCcceEeCCC-EEEEEC
Confidence                                     66778887765              3343333 223355555666677 677789


Q ss_pred             CCCcEEEEecCCccC
Q 014433          395 EDNILQIWQMAENIY  409 (424)
Q Consensus       395 ~dg~i~vw~~~~~~~  409 (424)
                      .||.+++||..++..
T Consensus       496 ~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          496 ADGRLVAYHAATGEK  510 (677)
T ss_dssp             TTSEEEEEETTTCCE
T ss_pred             CCCcEEEEECCCCce
Confidence            999999999998854

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.62  E-value=3.8e-06  Score=75.47  Aligned_cols=175  Identities=11%  Similarity=0.028  Sum_probs=113.9

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH  272 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  272 (424)
                      .+..++.++.|..+|.. +..      ..........+.++...+++. ++ .++.++.|..+|.. +..   +......
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~---~~~~~~~  175 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTE------KWRFKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTE---KWRFKTN  175 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCE---EEEEECS
T ss_pred             EEEEEecCCEEEEEcCC-CCE------EEEEcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCE---eEEEecC
Confidence            58888889999999987 422      222223344566677766664 44 67778999999988 542   3344444


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ...+.++...+++.  +..++  +.|..+| .+ +..+..+......+.++...+++.  |..++.++.|..++...   
T Consensus       176 ~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~g---  244 (330)
T 3hxj_A          176 DAITSAASIGKDGT--IYFGS--DKVYAIN-PD-GTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPDG---  244 (330)
T ss_dssp             SCCCSCCEECTTCC--EEEES--SSEEEEC-TT-SCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTTS---
T ss_pred             CCceeeeEEcCCCE--EEEEe--CEEEEEC-CC-CcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCCC---
Confidence            55677788877776  44455  7899999 54 455556665566788899988874  55677777888887432   


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                                  ..+.........+..+...+++.  |..++.+|.|..++..
T Consensus       245 ------------~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          245 ------------TEKWRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINPD  283 (330)
T ss_dssp             ------------CEEEEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECTT
T ss_pred             ------------CEeEEeeCCCCccccceEcCCCe--EEEecCCCCEEEECCC
Confidence                        22333333333445566666666  4556677788888864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.61  E-value=5.4e-05  Score=64.75  Aligned_cols=206  Identities=10%  Similarity=0.109  Sum_probs=130.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      -.+.+..++|+|++..++|+...++.|...|...           .....+. +-....-+|++.+++. ++++.-.++.
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g-----------~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~   92 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG-----------DLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYA   92 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC-----------CEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC-----------CEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCc
Confidence            4467999999998777888888888888888763           2233332 1224577888887664 5555556788


Q ss_pred             EEEEeCCCCCCCCccccee-ee--ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-------cc
Q 014433          203 ICLWDINAAPKNKSLEAMQ-IF--KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-------AH  272 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-------~~  272 (424)
                      +.++++............. .+  .........|+|+|.+..++++.-.+. ..+|.++.......+....       .+
T Consensus        93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccc
Confidence            9999887654211111111 00  123455789999999887876554443 4444443100001122211       12


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC---------CCEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK---------EEVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~---------~~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      ...+.+++++|....+++.......+.++|...  +++..+....         ..--.|+|.++|. ++ ..+..+.++
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-ly-IvsE~n~~y  247 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IY-IVSEPNRFY  247 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EE-EEETTTEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EE-EEcCCceEE
Confidence            346789999999888888888889999999774  4555544322         2568899999995 44 447766666


Q ss_pred             Eee
Q 014433          344 VWD  346 (424)
Q Consensus       344 iwd  346 (424)
                      .|.
T Consensus       248 ~f~  250 (255)
T 3qqz_A          248 RFT  250 (255)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=4.6e-06  Score=71.02  Aligned_cols=198  Identities=12%  Similarity=0.108  Sum_probs=117.7

Q ss_pred             cCCCc--eeEEEecCCCCceEEEEeCCC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe
Q 014433          176 GHSTE--GYGLSWSKFKEGHLLSGSDDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY  251 (424)
Q Consensus       176 ~h~~~--v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  251 (424)
                      .|...  ..+|.|+ ++ .++.+++.+|  .|+++|+.+++....      ... ..........+.+..+++..-.++.
T Consensus        38 phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~------~~l-~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQ------IEL-GKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEE------EEC-CTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEE------Eec-CCccceeEEEEeCCEEEEEEeeCCE
Confidence            35443  3788998 44 4677777766  899999998854322      221 1222222222345678877778999


Q ss_pred             EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC--C---CCEEEEEEc
Q 014433          252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH--K---EEVFQVGWN  326 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h--~---~~v~~~~~s  326 (424)
                      +.+||..+.+.   +.++.... .-..++  +++..++++ ..++.|.++|..+ .+.+.++...  .   ..++.+.|.
T Consensus       109 v~v~D~~t~~~---~~ti~~~~-eG~glt--~dg~~L~~S-dGs~~i~~iDp~T-~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          109 GFVWNIRNLRQ---VRSFNYDG-EGWGLT--HNDQYLIMS-DGTPVLRFLDPES-LTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EEEEETTTCCE---EEEEECSS-CCCCEE--ECSSCEEEC-CSSSEEEEECTTT-CSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEEEECccCcE---EEEEECCC-CceEEe--cCCCEEEEE-CCCCeEEEEcCCC-CeEEEEEEeccCCccccccceeEEE
Confidence            99999998664   55554322 223344  456655554 4477899999988 4555555432  1   345668887


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                       +| .+++..-.++.|.+.|..++..........-.+....  ...-....+.++|+|+++.++++|-
T Consensus       181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~--~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP--LPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS--CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc--ccCcCCceEEEEEcCCCCEEEEECC
Confidence             56 4666665688999999988754322211100000000  0011234688999999886666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.59  E-value=1.3e-05  Score=79.77  Aligned_cols=237  Identities=7%  Similarity=0.046  Sum_probs=134.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceeEEEecC--CCCceEEEEe------CCCcEEEEeCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSK--FKEGHLLSGS------DDAQICLWDIN  209 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~--~~~~~l~s~~------~dg~i~iwd~~  209 (424)
                      .|++++.|+.|+.+|..+          .+.+......  ......+..+|  .+. .++.++      .+|.|..||..
T Consensus       123 ~v~v~~~dg~l~AlDa~T----------G~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          123 KVYVGVLDGRLEAIDAKT----------GQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             EEEEECTTSEEEEEETTT----------CCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETT
T ss_pred             EEEEEccCCEEEEEECCC----------CCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECC
Confidence            577788899999999977          3334443321  11111111112  122 355543      36899999999


Q ss_pred             CCCCCCccccee-----e------------ee--------cCCccEeeEEEecCCCcEEEEEeCCC--------------
Q 014433          210 AAPKNKSLEAMQ-----I------------FK--------VHEGVVEDVAWHLRHEYLFGSVGDDQ--------------  250 (424)
Q Consensus       210 ~~~~~~~~~~~~-----~------------~~--------~~~~~v~~~~~~~~~~~~~~s~~~dg--------------  250 (424)
                      +++.........     .            +.        ++......++++|.... ++.+..++              
T Consensus       192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd  270 (689)
T 1yiq_A          192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGD  270 (689)
T ss_dssp             TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSC
T ss_pred             CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCC
Confidence            886533221100     0            00        11111235788887764 45676665              


Q ss_pred             -----eEEEEEcCCCCCCCCeeeeec--cC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcceEec
Q 014433          251 -----YLLIWDLRTPSVSKPVQSVVA--HQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       251 -----~i~i~d~~~~~~~~~~~~~~~--~~-------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~  314 (424)
                           .|..+|.++++.   +-.+..  |.       .++.......+|.  .+++.++.+|.++++|.++ ++++....
T Consensus       271 ~~y~~~v~AlD~~TG~~---~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~  346 (689)
T 1yiq_A          271 NLFLSSIVAVNADTGEY---VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKG  346 (689)
T ss_dssp             CTTTTEEEEEETTTCCE---EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEE
T ss_pred             ceeeeeEEEEEccCCce---eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEecccc
Confidence                 399999999874   323222  21       1122222222332  3688899999999999988 55542221


Q ss_pred             CCC----------------------------C-----------CEEEEEEcCCCCcEEEEEEC-----------------
Q 014433          315 SHK----------------------------E-----------EVFQVGWNPKNETILASCCL-----------------  338 (424)
Q Consensus       315 ~h~----------------------------~-----------~v~~~~~sp~~~~~l~s~~~-----------------  338 (424)
                      ...                            .           .-..++++|+.. ++++...                 
T Consensus       347 ~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~  425 (689)
T 1yiq_A          347 IVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNP  425 (689)
T ss_dssp             SSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCS
T ss_pred             ccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccc
Confidence            100                            0           012378888875 5555533                 


Q ss_pred             ----------------------------CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEE
Q 014433          339 ----------------------------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVI  390 (424)
Q Consensus       339 ----------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  390 (424)
                                                  +|.|..||+.++              +.+..+..+. .+....+...+. ++
T Consensus       426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG--------------~~~W~~~~~~-~~~~g~~~tagg-lv  489 (689)
T 1yiq_A          426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ--------------QAAWEVPYVT-IFNGGTLSTAGN-LV  489 (689)
T ss_dssp             CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT--------------EEEEEEEESS-SCCCCEEEETTT-EE
T ss_pred             cccccccCccccccCcccccCCCCCCCcceeEEEEECCCC--------------CeEeEccCCC-CccCccceECCC-EE
Confidence                                        255777777664              3344443333 234445555666 78


Q ss_pred             EEEeCCCcEEEEecCCccC
Q 014433          391 SSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       391 ~s~~~dg~i~vw~~~~~~~  409 (424)
                      +.++.||.|+.||..++..
T Consensus       490 f~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          490 FEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EEECTTSEEEEEETTTCCE
T ss_pred             EEECCCCcEEEEECCCCcc
Confidence            8889999999999998854

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=8.5e-05  Score=69.79  Aligned_cols=269  Identities=11%  Similarity=0.027  Sum_probs=147.9

Q ss_pred             ceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC----CCceeEEEe-------cCCCCceE
Q 014433          127 EVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH----STEGYGLSW-------SKFKEGHL  194 (424)
Q Consensus       127 ~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-------~~~~~~~l  194 (424)
                      ....|+|.|. +.+++++....+.|++.|...           ..+..+..-    ......|+|       ++++.. |
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-----------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~-l  207 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-----------RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY-M  207 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-----------TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE-E
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-----------CEEEEEEccCccccCCCcEEEEeecccccCCCCCE-E
Confidence            3568999983 555666665557788888776           222333221    235789999       998874 5


Q ss_pred             EEEeCCC-------cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC-------CC
Q 014433          195 LSGSDDA-------QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR-------TP  260 (424)
Q Consensus       195 ~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~-------~~  260 (424)
                      +++...+       .|.+++...............+... .....++.+|++..|+++-..++.|..+|+.       ++
T Consensus       208 yvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg  286 (496)
T 3kya_A          208 IVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG  286 (496)
T ss_dssp             EEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred             EEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence            5554433       2666664331111100000111111 2456788999878888888889999999998       54


Q ss_pred             CCCCC--------eeee--eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc---eEecCC---C-------
Q 014433          261 SVSKP--------VQSV--VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL---HTFDSH---K-------  317 (424)
Q Consensus       261 ~~~~~--------~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~h---~-------  317 (424)
                      ....+        ...+  .......+.|+|+|++..++++-.....|+.+|.......+   ..+-+.   .       
T Consensus       287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~  366 (496)
T 3kya_A          287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG  366 (496)
T ss_dssp             CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred             eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence            43111        1111  11234468999999998656666667889997654311111   122111   0       


Q ss_pred             -----CCEE-EEEEc-------CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCc--------------CCCCCeeeEEE
Q 014433          318 -----EEVF-QVGWN-------PKNETILASCCLGRRLMVWDLSRIDEEQTPEDA--------------EDGPPELLFIH  370 (424)
Q Consensus       318 -----~~v~-~~~~s-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~  370 (424)
                           .... .++..       +.+ .++++-....+|+.++. .+ ........              .++.+..    
T Consensus       367 ~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~----  439 (496)
T 3kya_A          367 TEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLRE----  439 (496)
T ss_dssp             GGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTT----
T ss_pred             cccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchh----
Confidence                 1234 44554       344 46666667788998883 22 11111000              0000000    


Q ss_pred             cCCCCCcceEEeCCC-CCcEEEEEeCCCcEEEEecCCccCCCCCCCC
Q 014433          371 GGHTSKISDFSWNPC-EDWVISSVAEDNILQIWQMAENIYHDEDDLP  416 (424)
Q Consensus       371 ~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  416 (424)
                      ...-....+++++++ +. ++++=..+..|+.+++.......+.+.+
T Consensus       440 ~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~~~~~~~~  485 (496)
T 3kya_A          440 VARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEENVAGDENI  485 (496)
T ss_dssp             TCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC--------
T ss_pred             hhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcccccCCCC
Confidence            001123578999997 66 7777778889999999988776654443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.56  E-value=0.00018  Score=61.45  Aligned_cols=208  Identities=14%  Similarity=0.088  Sum_probs=128.7

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i  252 (424)
                      +.+-...+.+++|+|++..++++...++.|...|+. +..      ++.+. .-......|++.+++. ++++.-.++.+
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v------~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l   93 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL------IRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAI   93 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE------EEEEECSSCSSEEEEEECSTTE-EEEEETTTTEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE------EEEEecCCCCChHHeEEeCCCE-EEEEECCCCcE
Confidence            345556799999999877566678888999999986 422      22221 1125678889888775 44455567889


Q ss_pred             EEEEcCCCCCCCCeeeee------ccCCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCCCCcceEec-------CCCC
Q 014433          253 LIWDLRTPSVSKPVQSVV------AHQSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKISTALHTFD-------SHKE  318 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~-------~h~~  318 (424)
                      .++++........+....      ........|+|+|.+..++++.-.+. .|..|+-......+..+.       .+-.
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            999887654211111111      22445689999999876665554443 455554111111222221       1234


Q ss_pred             CEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CC------CCCcceEEeCCCCCcEEE
Q 014433          319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GH------TSKISDFSWNPCEDWVIS  391 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h------~~~v~~~~~~~~~~~~l~  391 (424)
                      .+.+++++|....+++.......+.++|.... .            .....+. +.      ...--+++|.++|+ +.+
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~------------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyI  239 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V------------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYI  239 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E------------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E------------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEE
Confidence            67899999988778888888888999997642 1            1122222 11      12457899999998 555


Q ss_pred             EEeCCCcEEEEec
Q 014433          392 SVAEDNILQIWQM  404 (424)
Q Consensus       392 s~~~dg~i~vw~~  404 (424)
                      + ++-+.++++.-
T Consensus       240 v-sE~n~~y~f~~  251 (255)
T 3qqz_A          240 V-SEPNRFYRFTP  251 (255)
T ss_dssp             E-ETTTEEEEEEC
T ss_pred             E-cCCceEEEEEe
Confidence            5 77776666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.56  E-value=2.1e-06  Score=81.72  Aligned_cols=212  Identities=10%  Similarity=0.018  Sum_probs=132.7

Q ss_pred             EeccCCceeEEEe-c-CCCCcEEEEE-----------------eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce
Q 014433          121 QINHDGEVNRARY-M-PQNPFLIATK-----------------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG  181 (424)
Q Consensus       121 ~~~h~~~v~~~~~-~-p~~~~~latg-----------------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v  181 (424)
                      .+.....+..+++ . |++.++++++                 -.++.+.+.|..+          .+...++.--. ..
T Consensus       129 ~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg-~p  197 (595)
T 1fwx_A          129 EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSG-NL  197 (595)
T ss_dssp             ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESS-CC
T ss_pred             eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCC-Cc
Confidence            5655567888887 4 8887655553                 3356888999876          34444444222 45


Q ss_pred             eEEEecCCCCceEEEEeCCC--------------------------------------cEEEEeCCCCCCCCcccceeee
Q 014433          182 YGLSWSKFKEGHLLSGSDDA--------------------------------------QICLWDINAAPKNKSLEAMQIF  223 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg--------------------------------------~i~iwd~~~~~~~~~~~~~~~~  223 (424)
                      ..++.+|++. ++++++.+.                                      .|.+.|..+.+. ..  .+..+
T Consensus       198 d~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~-~~--~~~~I  273 (595)
T 1fwx_A          198 DNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-SL--FTRYI  273 (595)
T ss_dssp             CCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC-CS--SEEEE
T ss_pred             cceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC-ce--eEEEE
Confidence            6788889887 555555432                                      355666654110 00  01112


Q ss_pred             ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC-----C---CCeeeeeccCCCeeEEEecCCCCeEEEEEeCC
Q 014433          224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----S---KPVQSVVAHQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       224 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-----~---~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                      . -.....++.++|+|+++++++..+.+|.++|+.+.+.     .   ..+.....-......++|+|+| ++.++...|
T Consensus       274 p-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld  351 (595)
T 1fwx_A          274 P-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD  351 (595)
T ss_dssp             E-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTT
T ss_pred             e-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecC
Confidence            1 1235678999999999999988999999999986310     0   0111111234568899999999 778888889


Q ss_pred             CcEEEEECCCC---------CCcceEecCCCCCE-----EEEEEcCCCCcEEEEEECC-CeE-----------EEeeCCC
Q 014433          296 KTVKLFDLRKI---------STALHTFDSHKEEV-----FQVGWNPKNETILASCCLG-RRL-----------MVWDLSR  349 (424)
Q Consensus       296 g~i~iwd~~~~---------~~~~~~~~~h~~~v-----~~~~~sp~~~~~l~s~~~d-g~i-----------~iwd~~~  349 (424)
                      +.|.+||+...         .+.+.++..|-.+-     ..+.++|+|++++++.... .++           .++|+..
T Consensus       352 sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          352 SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             CcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            99999998651         34566666654322     2235579998554444332 234           7888854

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=2.3e-05  Score=77.76  Aligned_cols=201  Identities=7%  Similarity=0.057  Sum_probs=121.2

Q ss_pred             eEEEecCCCCceEEEEeCCC-------------------cEEEEeCCCCCCCCcccceeeeecCC-------ccEeeEEE
Q 014433          182 YGLSWSKFKEGHLLSGSDDA-------------------QICLWDINAAPKNKSLEAMQIFKVHE-------GVVEDVAW  235 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~  235 (424)
                      ..+++.|.+. +++.+..++                   .|..+|..+++....++.    ..|.       ....-+..
T Consensus       246 ~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~----~~~d~wd~~~~~~p~l~~~  320 (677)
T 1kb0_A          246 DSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE----TPGDNWDYTSTQPMILADI  320 (677)
T ss_dssp             SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES----STTCCSCCCCCSCCEEEEE
T ss_pred             cceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec----CCCcccccccCCCcEEEec
Confidence            3567788766 677776554                   589999988754322211    1111       11112222


Q ss_pred             ecCCC--cEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-----------CCCe------------------------eE
Q 014433          236 HLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----------QSEV------------------------NC  278 (424)
Q Consensus       236 ~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------~~~v------------------------~~  278 (424)
                      ..+++  .+++.++.+|.|+++|.++++.   +......           ..++                        ..
T Consensus       321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~  397 (677)
T 1kb0_A          321 KIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP  397 (677)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred             ccCCcEeeEEEEECCCCEEEEEECCCCCE---eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence            23552  4667889999999999999874   2222110           0001                        15


Q ss_pred             EEecCCCCeEEEEEeC-------------------------------------------CCcEEEEECCCCCCcceEecC
Q 014433          279 LAFNPFNEWILATGST-------------------------------------------DKTVKLFDLRKISTALHTFDS  315 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~-------------------------------------------dg~i~iwd~~~~~~~~~~~~~  315 (424)
                      ++++|++. ++++...                                           .|.|..||+.+ ++.+-.+..
T Consensus       398 ~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~  475 (677)
T 1kb0_A          398 MSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEH  475 (677)
T ss_dssp             CEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEE
T ss_pred             ceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCC
Confidence            67888877 4545432                                           27899999998 566555543


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CCCCCcceEEeCCCCCcEEEEEe
Q 014433          316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       316 h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                       ..++....+...+. +++.++.||.+++||.++++              .+..+. ++.....-+.|..+|+.+++..+
T Consensus       476 -~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~--------------~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~  539 (677)
T 1kb0_A          476 -VSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGE--------------KLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (677)
T ss_dssp             -SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCC--------------EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             -CCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCc--------------eeeeeeCCCCcccCCEEEEeCCEEEEEEec
Confidence             34445555666665 67778999999999999874              344443 33233344667778874444433


Q ss_pred             C----------------CCcEEEEecCCcc
Q 014433          395 E----------------DNILQIWQMAENI  408 (424)
Q Consensus       395 ~----------------dg~i~vw~~~~~~  408 (424)
                      .                .+.+.+|.+....
T Consensus       540 G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a  569 (677)
T 1kb0_A          540 GWGGVYGLAARATERQGPGTVYTFVVGGKA  569 (677)
T ss_dssp             CCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             cCCccccccccccccCCCCeEEEEeccccc
Confidence            2                4688889887543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.53  E-value=0.00031  Score=62.69  Aligned_cols=227  Identities=7%  Similarity=-0.020  Sum_probs=141.6

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      ...|+..++...        ... ...+......+.+++|.+.+..++.+-...+.|..+++.......     ......
T Consensus        12 ~~~I~~i~l~~~--------~~~-~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-----~~~~~~   77 (318)
T 3sov_A           12 RRDLRLVDATNG--------KEN-ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-----NVVVSG   77 (318)
T ss_dssp             EEEEEEEETTCT--------TSC-CEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-----EEEEEC
T ss_pred             cCeEEEEECCCC--------ceE-EEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-----EEEcCC
Confidence            467999998762        111 112222233567999998766455565667889999987652211     111122


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRK  305 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~  305 (424)
                      -.....+++.+.+..++.+-...+.|.++++.....   .............++++|.+.+++.+-. ..+.|..+++..
T Consensus        78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE---EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence            245678999987777887777888999999875431   2222233456789999997776565542 357888888764


Q ss_pred             CCCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          306 ISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       306 ~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                        .....+ ...-...+.|+++|++..++.+-+..+.|..+|+.....            ..+.  .+......++++..
T Consensus       155 --~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~~--~~~~~~P~glav~~  218 (318)
T 3sov_A          155 --SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR------------QAVV--KGSLPHPFALTLFE  218 (318)
T ss_dssp             --CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEE--CSCCSCEEEEEEET
T ss_pred             --CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce------------EEEe--cCCCCCceEEEEeC
Confidence              222222 222345789999997776777767788899999864211            1111  22233456677643


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCcc
Q 014433          385 CEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                        ..++.+-...+.|..++..++.
T Consensus       219 --~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          219 --DILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             --TEEEEEETTTTEEEEEETTTCC
T ss_pred             --CEEEEEecCCCeEEEEECCCCC
Confidence              3367776677888888886553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.52  E-value=9.5e-06  Score=69.09  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=117.8

Q ss_pred             eeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      ..+|.|+.  ..++.+.+.+|.|+++|+.+++....+     +.. ...-..+++  .+..+++..-.++.+.+||..+.
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-----l~~-~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-----RLG-NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-----ECT-TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTT
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-----CCC-CcceeEEEE--eCCEEEEEEccCCEEEEEECCcC
Confidence            36888873  447788888899999999988653322     111 111123444  45678877778999999999986


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CC---CCEEEEEEcCCCCcEEEE
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HK---EEVFQVGWNPKNETILAS  335 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~---~~v~~~~~sp~~~~~l~s  335 (424)
                      +.   +.++... ..-..++  +++..++++ ..++.|.++|..+ .+.+.++..  +.   ..++.+.|. +| .+++.
T Consensus       127 ~~---~~ti~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyan  196 (268)
T 3nok_A          127 QR---ERTTRYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NG-VIYAN  196 (268)
T ss_dssp             EE---EEEEECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE
T ss_pred             cE---EEEEeCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CC-EEEEE
Confidence            64   5554432 2224444  446655544 4588999999988 456665543  22   245778887 56 46666


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      .-.++.|.+.|..++..........-.+ ........-....+.++|+|++..+++||-
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~-~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDASALTR-AVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEECHHHHH-HHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             ECCCCeEEEEeCCCCcEEEEEECCCCcc-cccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6568899999998875332211100000 000000011235688999998886777764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.45  E-value=7.1e-05  Score=74.44  Aligned_cols=82  Identities=7%  Similarity=0.012  Sum_probs=53.6

Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC-
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH-  373 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-  373 (424)
                      +|.|+.||+.+ ++.+-.+..+. ++..-.+...+. +++.++.||.++.||.+++              +.+..+... 
T Consensus       454 ~g~l~A~D~~t-G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG--------------~~lw~~~~~~  516 (689)
T 1yiq_A          454 SGKLIAWDPVK-QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG--------------EKLWEQPAAS  516 (689)
T ss_dssp             EEEEEEEETTT-TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC--------------CEEEEEECSS
T ss_pred             ceeEEEEECCC-CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC--------------ccceeeeCCC
Confidence            37799999998 66666665433 333335555564 7888999999999999987              445444433 


Q ss_pred             CCCcceEEeCCCCCcEEEEE
Q 014433          374 TSKISDFSWNPCEDWVISSV  393 (424)
Q Consensus       374 ~~~v~~~~~~~~~~~~l~s~  393 (424)
                      .....-+.|..+|+..++..
T Consensus       517 ~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CCCSCCEEEEETTEEEEEEE
T ss_pred             CcccCceEEEECCEEEEEEE
Confidence            22234467778887544443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.45  E-value=0.00089  Score=61.82  Aligned_cols=213  Identities=8%  Similarity=0.032  Sum_probs=133.6

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      +.....+..|+|.+.+..++.+-...+.|+.+++.....      .......+........+|++.+.+..+.++-...+
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~------~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~  181 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  181 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC------CCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence            344567889999987766777766778999998865110      01112223324456778888876665556656678


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      .|.+.+++....      ...+...-.....|+++|.+..++.+-.. .+.|...++.....   .......-...+.|+
T Consensus       182 ~I~~~~~~g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~l~~P~gla  252 (400)
T 3p5b_L          182 TVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGIT  252 (400)
T ss_dssp             EEEEECTTTCSE------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSSCSCEEEEE
T ss_pred             eEEEEeCCCCce------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECCCCceEEEE
Confidence            899999875421      11122233457899999987777766533 47888888875432   222222335678999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +++.+..++++-...+.|..+|+.. .........  .-.....++..  +..++.+-...+.|..++..++..
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          253 LDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence            9998887777666678999999875 222222221  22345677774  335777777778899888666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.44  E-value=0.00044  Score=69.34  Aligned_cols=230  Identities=10%  Similarity=-0.020  Sum_probs=138.0

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      ...|+..++..           .....+......+.+|+|.+....++++-...+.|+.+++........  ....+...
T Consensus       403 ~~~Ir~i~l~~-----------~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~--~~~vi~~~  469 (791)
T 3m0c_C          403 RHEVRKMTLDR-----------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRD  469 (791)
T ss_dssp             BSSEEEECTTS-----------CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSS
T ss_pred             ccceeEeeccC-----------CcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc--eeEEEecC
Confidence            35677777664           122334445567789999986664555656678899998875321001  11222223


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-CcEEEEECCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-KTVKLFDLRK  305 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-g~i~iwd~~~  305 (424)
                      ......|++.+.+.+|+++-...+.|.+.++.....   ...+.........|+++|.+.+++++-... +.|...++..
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~---~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE---EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            356678999988888988888889999999975431   122223345688999999877666665333 7888888874


Q ss_pred             CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       306 ~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       ......+...-.....|++++.+..|+++-...+.|..+++.....            ..+....+.-....+|++.  
T Consensus       547 -~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~------------~~v~~~~~~l~~P~glav~--  611 (791)
T 3m0c_C          547 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVF--  611 (791)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEECTTTTSSEEEEEEE--
T ss_pred             -CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce------------EEEecCCCccCCCCEEEEe--
Confidence             2222223333357899999987766666656677899998864321            1111111112233455553  


Q ss_pred             CCcEEEEEeCCCcEEEEecCCc
Q 014433          386 EDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +.+++++-...+.|...+..++
T Consensus       612 ~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          612 EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCEEEEEeCCCC
Confidence            3346666666677776665444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=2.5e-05  Score=65.93  Aligned_cols=197  Identities=11%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             cCCCc--eeEEEecCCCCceEEEEeCC--CcEEEEeCCCCCCCCcccceeeeecCCccE--eeEEEecCCCcEEEEEeCC
Q 014433          176 GHSTE--GYGLSWSKFKEGHLLSGSDD--AQICLWDINAAPKNKSLEAMQIFKVHEGVV--EDVAWHLRHEYLFGSVGDD  249 (424)
Q Consensus       176 ~h~~~--v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~s~~~d  249 (424)
                      .|...  ..+|.|++ + .++.+.+..  ..|+.+|+.+++....      ... ....  ..++.  .+..+++..-.+
T Consensus        16 phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~------~~l-~~~~fgeGi~~--~~~~ly~ltw~~   84 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQR------AEV-PPPYFGAGIVA--WRDRLIQLTWRN   84 (243)
T ss_dssp             ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEE------EEC-CTTCCEEEEEE--ETTEEEEEESSS
T ss_pred             CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEE------EeC-CCCcceeEEEE--eCCEEEEEEeeC
Confidence            45543  56899986 3 356666665  4899999998754222      221 1122  23343  356788777789


Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCC-----CCEEEEE
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-----EEVFQVG  324 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~-----~~v~~~~  324 (424)
                      +.+.+||..+.+.   +.++... ..-..++  +++..++++ ..++.|.++|..+ .+.+.++....     ..++.+.
T Consensus        85 ~~v~v~D~~tl~~---~~ti~~~-~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           85 HEGFVYDLATLTP---RARFRYP-GEGWALT--SDDSHLYMS-DGTAVIRKLDPDT-LQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             SEEEEEETTTTEE---EEEEECS-SCCCEEE--ECSSCEEEE-CSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEE
T ss_pred             CEEEEEECCcCcE---EEEEeCC-CCceEEe--eCCCEEEEE-CCCCeEEEEeCCC-CeEEEEEEEccCCcccccceeeE
Confidence            9999999998654   5555432 2234555  446655555 4588999999988 45555555321     3456777


Q ss_pred             EcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          325 WNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       325 ~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      |. ++ .+++..-.+..|.+.|..++..........-.+.... ....-....++++|+|++..+++||-
T Consensus       157 ~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~-~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          157 WV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA-LTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS-CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             Ee-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc-ccCCcCCceEEEEEcCCCCEEEEECC
Confidence            76 45 4666655678899999998754332211100000000 00011235688999998886777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.44  E-value=0.00021  Score=71.89  Aligned_cols=199  Identities=8%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             ceeEEEec-CCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC-
Q 014433          127 EVNRARYM-PQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-  200 (424)
Q Consensus       127 ~v~~~~~~-p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-  200 (424)
                      .+...+|| |+|+.++.+...+|    .|+++|+.+..       ..... .+..   ...+++|+|+++.++++ ..+ 
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~-------~~l~~-~~~~---~~~~~~WspDg~~l~y~-~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS-------QTIAD-KVSG---TNGEIVWGPDHTSLFYV-TKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT-------CCCCC-CEEE---ECSCCEECSSTTEEEEE-EECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC-------EeCCc-cccC---ceeeEEEecCCCEEEEE-EECC
Confidence            57789999 99985444444333    59999998720       11011 1111   13478999999854444 443 


Q ss_pred             ----CcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeC--CCeEEEEEcCCCCCCCC-eeee-ec
Q 014433          201 ----AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKP-VQSV-VA  271 (424)
Q Consensus       201 ----g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~--dg~i~i~d~~~~~~~~~-~~~~-~~  271 (424)
                          ..|.++++.++...    ....+. ........+.|+|+++.++++...  ...|.++|+.++.. .. +..+ ..
T Consensus       243 ~~~~~~v~~~~lgt~~~~----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~  317 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSE----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPR  317 (751)
T ss_dssp             TCCEEEEEEEETTSCGGG----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCC
T ss_pred             CCCCCEEEEEECCCCchh----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecC
Confidence                25778888654321    111222 122345678999999987766543  34688889887531 11 0222 22


Q ss_pred             cCCCeeEEEecCCCCeEEEEEeCC----CcEEEEECCCCCCcceE-ecCCCC--CEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          272 HQSEVNCLAFNPFNEWILATGSTD----KTVKLFDLRKISTALHT-FDSHKE--EVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       272 ~~~~v~~v~~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~-~~~h~~--~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      ......++.|+. +..+++....+    ..|..+|+.+. ..... +..+..  .+..+.+.  +..++++...++..+|
T Consensus       318 ~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l  393 (751)
T 2xe4_A          318 EKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRI  393 (751)
T ss_dssp             CTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred             CCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence            345556666654 55556665544    35777777642 22222 333333  34455554  5567888888886554


Q ss_pred             ee
Q 014433          345 WD  346 (424)
Q Consensus       345 wd  346 (424)
                      |-
T Consensus       394 ~~  395 (751)
T 2xe4_A          394 WT  395 (751)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.41  E-value=0.00036  Score=62.26  Aligned_cols=185  Identities=8%  Similarity=-0.028  Sum_probs=117.0

Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC-CCeeeeeccCCCeeEE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-KPVQSVVAHQSEVNCL  279 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~v~~v  279 (424)
                      ..|+..|+.....      .... .....+..++|++.+..++.+-...+.|..+++...... .....+...-.....+
T Consensus        10 ~~I~~i~~~~~~~------~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A           10 HEVRKMTLDRSEY------TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             SSEEEEETTSCCC------EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             CeEEEEECCCcce------Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence            5688889876532      1111 234567899999987788878778899999998762100 0111222222456788


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC-CeEEEeeCCCCCcccCCCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG-RRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~  358 (424)
                      ++++.+..++++-...+.|.++|+.. ......+...-.....++++|.+..++.+.... +.|...++....       
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------  154 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------  154 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------
Confidence            99876776777777788999999874 222222222345778999999776666555443 678888775321       


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                            .... ....-...+.+++++++..++++-+..+.|..+++...
T Consensus       155 ------~~~~-~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          155 ------IYSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             ------EEEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ------eEEE-EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence                  1111 11223456789999887756777667788999998754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.0009  Score=59.64  Aligned_cols=205  Identities=7%  Similarity=0.011  Sum_probs=132.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW  206 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  206 (424)
                      .+.+++|.+.+..++.+-...+.|+.++....         ......+...-....++++.+.+..++++-...+.|.++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~---------~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSS---------SCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCC---------CceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence            56689999876667777777889999998761         111122232334566788887666555665667899999


Q ss_pred             eCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       207 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      ++.....      .............+++.|.+..++.+-. ..+.|..+++.....   .......-...+.|++++++
T Consensus       107 ~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~l~~Pnglavd~~~  177 (318)
T 3sov_A          107 NLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIIINSEIYWPNGLTLDYEE  177 (318)
T ss_dssp             ETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEETTT
T ss_pred             ECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEEEECCCCCccEEEEeccC
Confidence            9865321      1111223356789999998777776653 367888888865331   11112223456899999988


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          286 EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ..++++=+..+.|..+|+.. ................+++..  ..++.+-...+.|..++..++..
T Consensus       178 ~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          178 QKLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CEEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc
Confidence            87777766778999999874 222222232345567788753  34677766788899999876653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00031  Score=65.56  Aligned_cols=242  Identities=7%  Similarity=0.037  Sum_probs=137.9

Q ss_pred             ceeEEEecC-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-CC---
Q 014433          127 EVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DA---  201 (424)
Q Consensus       127 ~v~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg---  201 (424)
                      ....|+++| ++..++++ ...+.|+.+|...           ..+..+.........|+|++++.. |+.+.. ++   
T Consensus       138 ~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~-----------~~v~~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEK-----------EYVSTVYSGLSKVRTICWTHEADS-MIITNDQNNNDR  204 (430)
T ss_dssp             CCCEEEEETTEEEEEEEE-EBTEEEEEEETTT-----------TEEEEEECCCSCEEEEEECTTSSE-EEEEECCSCTTS
T ss_pred             CCCEEEECCCCCCeEEEE-eCCCcEEEEECCC-----------CEEEEEecCCCCcceEEEeCCCCE-EEEEeCCCCccc
Confidence            457889998 34445554 3337888898875           223334444556889999998874 554443 22   


Q ss_pred             -cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       202 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                       .+.+.+.. +...    ....+. .......++++|++..++++-..++.|..++...... ..+... ......+.|+
T Consensus       205 ~~v~~~~~~-g~~~----~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~-~~~~~P~gia  276 (430)
T 3tc9_A          205 PNNYILTRE-SGFK----VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTI-QDSGWEFHIQ  276 (430)
T ss_dssp             EEEEEEEGG-GTSC----SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSSCCEEEE
T ss_pred             ceEEEEeCC-Ccee----eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEc-CCCCcceeEE
Confidence             23334432 2111    011121 1234678889995556777777789999999876431 011111 1123577899


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCc---ceEecCC---------------CCCEE-EEEEc--------CCCCcEE
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTA---LHTFDSH---------------KEEVF-QVGWN--------PKNETIL  333 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~h---------------~~~v~-~~~~s--------p~~~~~l  333 (424)
                      |+|++.+++++-...+.|..++.......   +..+.+.               -.... .++..        +++ .++
T Consensus       277 ~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~ly  355 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFY  355 (430)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEE
T ss_pred             EcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEE
Confidence            99999877777777889999887531111   1122111               01123 45553        234 355


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-------C----------CCCCcceEEeCCCCCcEEEEEeCC
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-------G----------HTSKISDFSWNPCEDWVISSVAED  396 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------h~~~v~~~~~~~~~~~~l~s~~~d  396 (424)
                      ++-...++|+.++.. +              .+.....       +          .-.....++++|++..++++-..+
T Consensus       356 vaD~~n~~I~~i~~~-G--------------~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          356 FCDRENHCIRILTPQ-G--------------RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             EEEGGGTEEEEECTT-S--------------EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             EEECCCcEEEEECCC-C--------------cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence            555556778887732 2              1111110       0          012467899999544477777777


Q ss_pred             CcEEEEecC
Q 014433          397 NILQIWQMA  405 (424)
Q Consensus       397 g~i~vw~~~  405 (424)
                      +.|+..+++
T Consensus       421 ~rIr~i~~e  429 (430)
T 3tc9_A          421 RRIRKIGYE  429 (430)
T ss_dssp             TEEEEEEEC
T ss_pred             CeEEEEccC
Confidence            888888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.34  E-value=0.00047  Score=64.35  Aligned_cols=255  Identities=6%  Similarity=-0.030  Sum_probs=139.8

Q ss_pred             ceeEEEecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC---C
Q 014433          127 EVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---A  201 (424)
Q Consensus       127 ~v~~~~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g  201 (424)
                      ....|+|.|+  +..++++ ...+.|+.++...           ..+..+........+|++++++. ++++....   .
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-----------g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~  206 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-----------QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTN  206 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-----------TEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-----------CEEEEeecCCCCccEEEECCCCC-EEEEcCCCCccc
Confidence            4668899984  3344444 3338899999854           11233444445688999999887 55554321   1


Q ss_pred             c-EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          202 Q-ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       202 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      . +...+...... .    ...+. .......++++|.+..++++-..++.|+.+|..++.....+... ........++
T Consensus       207 ~gv~~~~~~~~~~-~----~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia  279 (433)
T 4hw6_A          207 TGIYLFTRASGFT-E----RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIV  279 (433)
T ss_dssp             EEEEEECGGGTTC-C----EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEE
T ss_pred             ceEEEEECCCCee-c----ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEE
Confidence            1 33333321110 0    01111 23456778999955567766667788999998755420111111 1122234699


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCc---ceEecCC---------------CCCEEEEEE---------cCCCCcEE
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTA---LHTFDSH---------------KEEVFQVGW---------NPKNETIL  333 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~h---------------~~~v~~~~~---------sp~~~~~l  333 (424)
                      |+|++.+++++-...+.|+.+++......   ...+.+.               -.....+++         .+++ .++
T Consensus       280 ~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~ly  358 (433)
T 4hw6_A          280 WHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFY  358 (433)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEE
Confidence            99999876777777789999887531111   1122111               123567999         6666 466


Q ss_pred             EEEECCCeEEEeeCCCCCcccCCCCcCC-CCCeeeEE-E--cCCCCCcceEEeC-CCCCcEEEEEeCCCcEEEEecC
Q 014433          334 ASCCLGRRLMVWDLSRIDEEQTPEDAED-GPPELLFI-H--GGHTSKISDFSWN-PCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~-~--~~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ++-...++|+.++.. +. ......... ...-..-- .  ...-.....++++ +++. ++++-..++.|+..+++
T Consensus       359 vaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEEEecC
Confidence            666667889988752 21 110000000 00000000 0  0011235789999 5565 77776777888888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.34  E-value=0.0016  Score=59.40  Aligned_cols=221  Identities=9%  Similarity=0.025  Sum_probs=125.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      .+.+++.++.|..+|..+          .+..................  +. .++.++.++.|..+|..+++.....  
T Consensus       105 ~v~v~~~~g~l~a~d~~t----------G~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~--  169 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSD----------GTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTV--  169 (376)
T ss_dssp             EEEEEETTSEEEEEETTT----------CCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEE--
T ss_pred             EEEEEcCCCEEEEEECCC----------CCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEE--
Confidence            566678899999999876          23333333322211112222  33 6888889999999999877532221  


Q ss_pred             eeeeecCCcc-----EeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCC-------CeeEEEecC--CC
Q 014433          220 MQIFKVHEGV-----VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-------EVNCLAFNP--FN  285 (424)
Q Consensus       220 ~~~~~~~~~~-----v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~v~~v~~~~--~~  285 (424)
                          ......     .......  +.. +..++.++.|..+|.++++.   +-.......       .+..+...|  .+
T Consensus       170 ----~~~~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~~  239 (376)
T 3q7m_A          170 ----NLDMPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAVLMEQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVVN  239 (376)
T ss_dssp             ----ECCC-----CCCCCCEEE--TTE-EEECCTTTEEEEEETTTCCE---EEEEECCC-----------CCCCCCEEET
T ss_pred             ----eCCCCceeecCCCCcEEE--CCE-EEEEcCCCEEEEEECCCCcE---EEEEecccCCCCcccccccccCCCcEEEC
Confidence                111100     0122222  233 44678899999999988764   222211100       000010111  13


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCe
Q 014433          286 EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE  365 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  365 (424)
                      . .++.++.++.+..+|.++ ++.+.....  .....+...  +. .++.++.++.|..+|..++.              
T Consensus       240 ~-~v~~~~~~g~l~~~d~~t-G~~~w~~~~--~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~--------------  298 (376)
T 3q7m_A          240 G-VVFALAYNGNLTALDLRS-GQIMWKREL--GSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGV--------------  298 (376)
T ss_dssp             T-EEEEECTTSCEEEEETTT-CCEEEEECC--CCEEEEEEE--TT-EEEEEETTCCEEEEETTTCC--------------
T ss_pred             C-EEEEEecCcEEEEEECCC-CcEEeeccC--CCCCCceEE--CC-EEEEEcCCCeEEEEECCCCc--------------
Confidence            3 467778899999999987 555544442  334445443  33 46777888999999998763              


Q ss_pred             eeEEEc-CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          366 LLFIHG-GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       366 ~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .+.... .....+......  +. .|+.++.+|.|.++|..++.+
T Consensus       299 ~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcE
Confidence            223222 111222333332  33 467778899999999988764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.32  E-value=0.002  Score=65.39  Aligned_cols=242  Identities=8%  Similarity=0.035  Sum_probs=147.5

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--------CCCceeEEEecCCCCceEEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--------HSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ...|.++...+++.  |-.|+.++-+.+|+..+.           ....+..        ....|.++...+++.  |..
T Consensus       214 ~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWi  278 (795)
T 4a2l_A          214 TKQIQAILQQSPTR--IWVATEGAGLFLINPKTK-----------EIKNYLHSPSNPKSISSNYIRSLAMDSQNR--LWI  278 (795)
T ss_dssp             CCCEEEEEEEETTE--EEEEEBSSCEEEEETTTT-----------EEEEECCCTTCTTSCSCSBEEEEEECTTSC--EEE
T ss_pred             CCeeEEEEEcCCCC--EEEEECCCCeEEEeCCCC-----------eEEEeecCCCCccccCCCeEEEEEEcCCCC--EEE
Confidence            45688888777664  333454444888887651           1111111        135688998887665  555


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceee-----eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQI-----FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-  270 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-  270 (424)
                      |+.+ -|.+|+..+...    .....     .......|.++...+++. +. .|+.++-|..|+......    ..+. 
T Consensus       279 gt~~-Gl~~~~~~~~~~----~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-igt~~~Gl~~~~~~~~~~----~~~~~  347 (795)
T 4a2l_A          279 GTFN-DLNIYHEGTDSF----ASYSSNPVENGSLSQRSVRSIFMDSQGG-MW-LGTYFGGLNYYHPIRNRF----KNIRN  347 (795)
T ss_dssp             EESS-CEEEEETTTTEE----EEECCCTTSTTSCSSSCEEEEEECTTSC-EE-EEESSSCEEEECGGGGSS----EEECC
T ss_pred             EeCC-hhheEcCCCCeE----EEEecCCCCCCCCCCCcEEEEEEeCCcC-EE-EEECCCCeEEeCCCcccc----eEEcC
Confidence            6655 588888765421    11100     011235799999988875 44 567777899998765431    1111 


Q ss_pred             ------ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---------CCCCCEEEEEEcCCCCcEEEE
Q 014433          271 ------AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---------SHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       271 ------~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---------~h~~~v~~~~~sp~~~~~l~s  335 (424)
                            .....|.++..++++.  |..|+.++-|..||..+ +. ...+.         .....|.++...+++. +|..
T Consensus       348 ~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWi  422 (795)
T 4a2l_A          348 IPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYI  422 (795)
T ss_dssp             CTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTT-CC-EEEECCC------CCSCSCEEEEEEETTTT-EEEE
T ss_pred             CCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEE
Confidence                  1245699999998876  66788887899999875 22 22222         1235789999988874 3556


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |+.++-|.+||..++........    .+      ......|.++...+++. +.+.+ .+ -|.+|+..++.+.
T Consensus       423 gt~~~Gl~~~d~~~~~~~~~~~~----~~------~l~~~~v~~i~~d~~g~-lwigt-~~-Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQVENFNQR----NS------QLVNENVYAILPDGEGN-LWLGT-LS-ALVRFNPEQRSFT  484 (795)
T ss_dssp             EETTTEEEEEETTTCCEEEECTT----TS------CCSCSCEEEEEECSSSC-EEEEE-SS-CEEEEETTTTEEE
T ss_pred             EeCcCceeEEeCCCCcEEEeecC----CC------CcCCCeeEEEEECCCCC-EEEEe-cC-ceeEEeCCCCeEE
Confidence            77767799999876431110000    00      01234688899888888 45544 34 4888998876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.32  E-value=0.001  Score=66.75  Aligned_cols=211  Identities=7%  Similarity=0.027  Sum_probs=130.7

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ....+..|+|.+.+..++.+-...+.|+.+++.....      .......+........+|++.+.+..++++-...+.|
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence            3456778889886666777767778888888865110      0011222332345567888887776566666678899


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      .+.++.....      ...+...-.....|+++|.+..|+.+-... +.|.+.++.....   ...+...-...+.|+++
T Consensus       496 ~v~~ldG~~~------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~lv~~~l~~P~GLavD  566 (791)
T 3m0c_C          496 SVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLD  566 (791)
T ss_dssp             EEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSCSCEEEEEEE
T ss_pred             EEEeCCCCeE------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce---EEEEeCCCCCceEEEEe
Confidence            9999875321      111222334688999999877787665443 7888888875331   12222233568899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecC--CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +.+..|+++=...+.|..+++.. ......+..  .-....+|++..  ..++++-...+.|...+..++..
T Consensus       567 ~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          567 LLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTCCC
T ss_pred             cCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCCCCcc
Confidence            88877666666677899999875 222222222  123445666643  35666766778888888766543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.29  E-value=0.0012  Score=66.97  Aligned_cols=244  Identities=8%  Similarity=0.067  Sum_probs=147.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--------cCCCceeEEEecCCCCceEEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--------GHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ..|.++...+++.  |..|+.. -|.+|+....           ....+.        -....|.++...++|.  |-.|
T Consensus       263 ~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWig  326 (795)
T 4a2l_A          263 NYIRSLAMDSQNR--LWIGTFN-DLNIYHEGTD-----------SFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLG  326 (795)
T ss_dssp             SBEEEEEECTTSC--EEEEESS-CEEEEETTTT-----------EEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEE
T ss_pred             CeEEEEEEcCCCC--EEEEeCC-hhheEcCCCC-----------eEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEE
Confidence            5688998888776  3344555 4888887651           111111        1235688998887665  7778


Q ss_pred             eCCCcEEEEeCCCCCCCCccccee-eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee------
Q 014433          198 SDDAQICLWDINAAPKNKSLEAMQ-IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV------  270 (424)
Q Consensus       198 ~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~------  270 (424)
                      +.++-|..|+....... .+.... .-......|.++...+++. +. .|+.++-|..||..++.    ...+.      
T Consensus       327 t~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~----~~~~~~~~~~~  399 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQR----FTSYTLQEDES  399 (795)
T ss_dssp             ESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCC----EEEECCC----
T ss_pred             ECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCc----EEEEecCCCCc
Confidence            88788889987543210 000000 0001235689999888775 44 57777789999987654    22221      


Q ss_pred             ---ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-----CCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          271 ---AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-----SHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       271 ---~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                         .....|.++...+++. +|..|+.++-|.+||..+ ++ ...+.     .+...|.++...+++. +. .|+.+| +
T Consensus       400 ~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-igt~~G-l  473 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQLVNENVYAILPDGEGN-LW-LGTLSA-L  473 (795)
T ss_dssp             --CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTT-CC-EEEECTTTSCCSCSCEEEEEECSSSC-EE-EEESSC-E
T ss_pred             ccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCcCCCeeEEEEECCCCC-EE-EEecCc-e
Confidence               1235689999888776 466778777899999876 32 23332     2346799999998885 34 444455 8


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .+||..+.........  ..+ .     .-....|.++...+++. +.+.+. . -|..|+..++.+
T Consensus       474 ~~~~~~~~~~~~~~~~--~~~-~-----~~~~~~i~~i~~d~~g~-lWigt~-~-Gl~~~~~~~~~~  529 (795)
T 4a2l_A          474 VRFNPEQRSFTTIEKE--KDG-T-----PVVSKQITTLFRDSHKR-LWIGGE-E-GLSVFKQEGLDI  529 (795)
T ss_dssp             EEEETTTTEEEECCBC--TTC-C-----BCCCCCEEEEEECTTCC-EEEEES-S-CEEEEEEETTEE
T ss_pred             eEEeCCCCeEEEcccc--ccc-c-----ccCCceEEEEEECCCCC-EEEEeC-C-ceEEEeCCCCeE
Confidence            8898765421110000  000 0     01234688899999988 455443 4 488888876544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.29  E-value=1e-05  Score=80.49  Aligned_cols=207  Identities=8%  Similarity=-0.023  Sum_probs=122.2

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ..+.+|+|.+.+..++++-...+.|+.+++........  ....+.........|++.+.+..|+++-...+.|.++++.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            45678999987664444444568899999875210000  0011111122456788887666777676677889999987


Q ss_pred             CCCCCCCeeee-eccCCCeeEEEecCCCCeEEEEEeCC-CcEEEEECCCCCCcceEe-cCCCCCEEEEEEcCCCCcEEEE
Q 014433          259 TPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTD-KTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       259 ~~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~d-g~i~iwd~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      ...    ...+ .........|+++|.+.+++++-... +.|..+++..  .....+ ...-...+.|+|+|++..++++
T Consensus       484 g~~----~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          484 GVK----RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             SCC----EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred             CCc----eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence            543    2222 22234567889999777656554333 6788887764  222222 2223456789999987777777


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      -+..+.|..+++.....            ..+....+......++++..+  +++++....+.|..++..++
T Consensus       558 D~~~~~I~~~d~dG~~~------------~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             ETTTTEEEEECSSSSCC------------EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTE
T ss_pred             ecCCCeEEEEccCCCce------------EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCC
Confidence            77788899999864211            111111111223455666543  46777777788888887554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.28  E-value=0.00017  Score=64.47  Aligned_cols=208  Identities=10%  Similarity=0.045  Sum_probs=120.6

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--------------eeecCCccEeeEEEecCCCcEEE
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--------------IFKVHEGVVEDVAWHLRHEYLFG  244 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~  244 (424)
                      ....+++|.+++. +++++..++.|..|+...... ..+....              ........+..+++.+++..+++
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            4466889998765 688888899999998865321 0000000              00001135788999973345654


Q ss_pred             EEeCCCeEEEEEcCCCCCCCCeeee-e-ccCCCeeEEEecC-CCCeEEEEEeC-----------------CCcEEEEECC
Q 014433          245 SVGDDQYLLIWDLRTPSVSKPVQSV-V-AHQSEVNCLAFNP-FNEWILATGST-----------------DKTVKLFDLR  304 (424)
Q Consensus       245 s~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~v~~~~-~~~~~l~tg~~-----------------dg~i~iwd~~  304 (424)
                       +...+.|..+|..++.. ..+... . ......+.+++.+ +|. +.++-..                 ++.|..||..
T Consensus        97 -~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           97 -VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             -EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             -EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence             44445588888765431 111111 0 0123468899999 886 4554322                 3678888876


Q ss_pred             CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       305 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      . +.. ..+...-.....++|+|++..++++-...+.|.+|++.....         .....+...   .+ ...+++.+
T Consensus       174 ~-~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~---~g-P~gi~~d~  238 (322)
T 2fp8_A          174 T-KET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI---PN-PGNIKRNA  238 (322)
T ss_dssp             T-TEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC---SS-EEEEEECT
T ss_pred             C-CEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC---CC-CCCeEECC
Confidence            5 222 222111234567999999875566656678999999874210         011222221   22 67899999


Q ss_pred             CCCcEEEEEeC----------CCcEEEEecCCc
Q 014433          385 CEDWVISSVAE----------DNILQIWQMAEN  407 (424)
Q Consensus       385 ~~~~~l~s~~~----------dg~i~vw~~~~~  407 (424)
                      +|. +.++...          .+.|..++....
T Consensus       239 ~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~  270 (322)
T 2fp8_A          239 DGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN  270 (322)
T ss_dssp             TSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC
T ss_pred             CCC-EEEEecCcccccccCCCccEEEEECCCCC
Confidence            998 5555443          456777776544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=0.00016  Score=72.75  Aligned_cols=201  Identities=12%  Similarity=0.107  Sum_probs=113.4

Q ss_pred             ceeEEEec-CCCCceEEEEeCCC----cEEEEeCCCC-CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC----
Q 014433          180 EGYGLSWS-KFKEGHLLSGSDDA----QICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD----  249 (424)
Q Consensus       180 ~v~~l~~~-~~~~~~l~s~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----  249 (424)
                      .+...+|| |+|+.+.++.+.+|    .|+++|+.++ ....     ..+.   .....++|+|+++.++.+....    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----DKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----CCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----cccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            57789999 99984444444443    4999999876 4211     0111   1245789999998777654432    


Q ss_pred             CeEEEEEcCCCCCCCCeeeee-ccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcc--eEec-CCCCCEEEE
Q 014433          250 QYLLIWDLRTPSVSKPVQSVV-AHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTAL--HTFD-SHKEEVFQV  323 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~--~~~~-~h~~~v~~~  323 (424)
                      ..|+++++.++.. .....+. ........+.|+|++++++++...  ...|.++|+.+.....  ..+. .......++
T Consensus       247 ~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          247 NKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence            3588888876532 1122222 223446778999999976666543  3468888988632222  3332 334455666


Q ss_pred             EEcCCCCcEEEEEECC--C--eEEEeeCCCCCcccCCCCcCCCCCee-eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc
Q 014433          324 GWNPKNETILASCCLG--R--RLMVWDLSRIDEEQTPEDAEDGPPEL-LFIHGGHTSKISDFSWNPCEDWVISSVAEDNI  398 (424)
Q Consensus       324 ~~sp~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  398 (424)
                      .|+. ++.+++....+  +  .|..+++.....           ... +... .....+.++.+.  +.+++++...++.
T Consensus       326 ~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-----------~~~~li~~-~~~~~l~~~~~~--~~~lv~~~~~~g~  390 (751)
T 2xe4_A          326 QMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-----------WSHVLVDH-SEDVFMESIAVR--SNYLVVAGRRAGL  390 (751)
T ss_dssp             EEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-----------CCCEEECC-CSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred             eeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-----------ceeeEECC-CCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence            6654 44556565554  3  566666543110           011 1111 111134455554  5557888888886


Q ss_pred             EEEEec
Q 014433          399 LQIWQM  404 (424)
Q Consensus       399 i~vw~~  404 (424)
                      .+||-+
T Consensus       391 ~~l~~~  396 (751)
T 2xe4_A          391 TRIWTM  396 (751)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.28  E-value=0.00033  Score=64.04  Aligned_cols=218  Identities=10%  Similarity=-0.033  Sum_probs=120.9

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-----eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-----YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN  214 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  214 (424)
                      .+++++.++.|..+|..+          .+............     ......  +. .++.+..++.|..+|..+++..
T Consensus       145 ~v~v~~~~g~l~~~d~~t----------G~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~  211 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEAD----------GAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMI  211 (376)
T ss_dssp             EEEEECTTSEEEEEETTT----------CCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEE
T ss_pred             EEEEEcCCCeEEEEECCC----------CcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEE
Confidence            566778899999999876          23333333221110     111222  23 5888888999999999877432


Q ss_pred             CcccceeeeecCC--cc---E-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeE
Q 014433          215 KSLEAMQIFKVHE--GV---V-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI  288 (424)
Q Consensus       215 ~~~~~~~~~~~~~--~~---v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  288 (424)
                      ....... ..+..  ..   + ......  +..+ ..++.++.+..+|.++++.   +-...  ......+...  +. .
T Consensus       212 w~~~~~~-~~~~~~~~~~~~~~~~p~~~--~~~v-~~~~~~g~l~~~d~~tG~~---~w~~~--~~~~~~~~~~--~~-~  279 (376)
T 3q7m_A          212 WQQRISQ-ATGSTEIDRLSDVDTTPVVV--NGVV-FALAYNGNLTALDLRSGQI---MWKRE--LGSVNDFIVD--GN-R  279 (376)
T ss_dssp             EEEECCC------------CCCCCCEEE--TTEE-EEECTTSCEEEEETTTCCE---EEEEC--CCCEEEEEEE--TT-E
T ss_pred             EEEeccc-CCCCcccccccccCCCcEEE--CCEE-EEEecCcEEEEEECCCCcE---Eeecc--CCCCCCceEE--CC-E
Confidence            2111000 00000  00   0 111111  3334 4677899999999998763   22221  2334444443  44 4


Q ss_pred             EEEEeCCCcEEEEECCCCCCcceEec-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeee
Q 014433          289 LATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL  367 (424)
Q Consensus       289 l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  367 (424)
                      +..++.++.|..+|..+ ++.+.... .....+......  +. .|+.++.+|.|.++|..++.              .+
T Consensus       280 l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~--------------~~  341 (376)
T 3q7m_A          280 IYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGR--------------FV  341 (376)
T ss_dssp             EEEEETTCCEEEEETTT-CCEEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCC--------------EE
T ss_pred             EEEEcCCCeEEEEECCC-CcEEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCc--------------EE
Confidence            66778899999999988 55554444 222223333332  22 57788889999999998763              33


Q ss_pred             EEEcCCCCCcce-EEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          368 FIHGGHTSKISD-FSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       368 ~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      .........+.. .... ++  .|+.++.+|.|..|+
T Consensus       342 ~~~~~~~~~~~~~~~~~-~~--~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          342 AQQKVDSSGFQTEPVAA-DG--KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEECCTTCBCSCCEEE-TT--EEEEEBTTSCEEEEE
T ss_pred             EEEecCCCcceeCCEEE-CC--EEEEEeCCCEEEEEe
Confidence            333322222222 2222 33  466778899999886

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.26  E-value=0.00049  Score=61.00  Aligned_cols=200  Identities=14%  Similarity=0.073  Sum_probs=118.6

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-CC-eEEEEE
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQ-YLLIWD  256 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg-~i~i~d  256 (424)
                      ....+++|++++. ++++-..++.|..||....       ....+ .....+..+++.+++. ++++... ++ .|..+|
T Consensus        32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-------~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-------QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV  101 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-------EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-------eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEc
Confidence            4577899999776 5666667899999987642       11111 1245688999999987 5545433 22 477777


Q ss_pred             cCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE---------ecCCCCCEEEEEEcC
Q 014433          257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT---------FDSHKEEVFQVGWNP  327 (424)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---------~~~h~~~v~~~~~sp  327 (424)
                      ..+++. ..+... ........++..+.+ .++++-..++.|.++|.......+..         ....-...+.+  +|
T Consensus       102 ~~~g~~-~~~~~~-~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          102 KSDGTV-ETLLTL-PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             CTTSCE-EEEEEC-TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             CCCCeE-EEEEeC-CCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            766542 111111 112233445544433 35555556889999997642111110         00111234556  78


Q ss_pred             CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      ++..++++-...+.|..|++......        ...+.+...    .....++++++|. ++++....+.|.+++...
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~--------~~~~~~~~~----~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKP--------GEPEIFVEQ----TNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCB--------CCCEEEEES----CCCSSEEEBTTCC-EEEECBTTCCEEEECTTC
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCC--------CccEEEecc----CCCCCeEECCCCC-EEEEeCCCCeEEEECCCC
Confidence            88767777777889999998642110        011222211    3467899999998 677766778899998763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.25  E-value=0.00028  Score=69.84  Aligned_cols=260  Identities=10%  Similarity=0.007  Sum_probs=135.8

Q ss_pred             CCCcEEEEEEeccCCceeEEEecC-CCCcEEEEEeCCC-----------eEEEEeCCCCCCCCCCCCCCCCcEEEec-CC
Q 014433          112 ANGKVQIIQQINHDGEVNRARYMP-QNPFLIATKTVSA-----------EVYVFDYSKHPSKPPLDGACSPDLRLRG-HS  178 (424)
Q Consensus       112 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~latg~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~-h~  178 (424)
                      ..++...+..+..  .-..+++.| ++ .+++.|+.+.           .+.+||..+        ..+.....+.. +.
T Consensus       174 ~~~~W~~~~~~P~--~~~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--------~~w~~~~~~~~~~~  242 (656)
T 1k3i_A          174 GLGRWGPTIDLPI--VPAAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPST--------GIVSDRTVTVTKHD  242 (656)
T ss_dssp             TSCEEEEEEECSS--CCSEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTT--------CCBCCCEEEECSCC
T ss_pred             CCCeeeeeccCCC--CceeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCC--------CcEEeCcccCCCCC
Confidence            3344444433332  334667777 55 4777776542           688999887        44555555433 22


Q ss_pred             CceeEEEecCCCCceEEEEe-CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-CC-----Ce
Q 014433          179 TEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DD-----QY  251 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~d-----g~  251 (424)
                      ....++++..++. +++.|+ .+..+.+||..+..    ...+..+.. ...-.+++..+++. +++.|+ .+     ..
T Consensus       243 ~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~~----W~~~~~~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~  315 (656)
T 1k3i_A          243 MFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDS----WIPGPDMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKN  315 (656)
T ss_dssp             CSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTE----EEECCCCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCC
T ss_pred             CccccccCCCCCC-EEEeCCCCCCceEEecCcCCc----eeECCCCCc-cccccceEEecCCe-EEEEeCcccCCccccc
Confidence            3334567777776 777777 45689999987642    111111111 11112344555665 666777 34     56


Q ss_pred             EEEEEcCCCCCCCCeeeeec-----cCCCeeEEEecCCCCeEEEEEeCCC---------cEEEEECCCCCCcceEecCC-
Q 014433          252 LLIWDLRTPSVSKPVQSVVA-----HQSEVNCLAFNPFNEWILATGSTDK---------TVKLFDLRKISTALHTFDSH-  316 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~~l~tg~~dg---------~i~iwd~~~~~~~~~~~~~h-  316 (424)
                      +.+||..+..    ...+..     ....-....+..++. +++.|+.+|         .+..||.... .-......+ 
T Consensus       316 ~e~yd~~t~~----W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~  389 (656)
T 1k3i_A          316 GEVYSPSSKT----WTSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQ  389 (656)
T ss_dssp             EEEEETTTTE----EEEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECE
T ss_pred             ceEeCCCCCc----ceeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccc
Confidence            8999998754    111100     000000011223333 455565443         5678888763 211111111 


Q ss_pred             --------CCCEEEEEEcCCCCcEEEEEECCC-----------eEEEeeCCCCCcccCCCCcCCCCCeeeEEE--cCCCC
Q 014433          317 --------KEEVFQVGWNPKNETILASCCLGR-----------RLMVWDLSRIDEEQTPEDAEDGPPELLFIH--GGHTS  375 (424)
Q Consensus       317 --------~~~v~~~~~sp~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~  375 (424)
                              ...-.++.|...+..+++.|+.++           .|.+||.....-.              ...  ..+..
T Consensus       390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~--------------~~~~~~mp~~  455 (656)
T 1k3i_A          390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT--------------VFASNGLYFA  455 (656)
T ss_dssp             ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE--------------EECTTCCSSC
T ss_pred             cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee--------------EEccCCCCCC
Confidence                    112345555543445788887542           5777776653211              110  11122


Q ss_pred             Cc-ceEEeCCCCCcEEEEEeCC-----------CcEEEEecCCccCC
Q 014433          376 KI-SDFSWNPCEDWVISSVAED-----------NILQIWQMAENIYH  410 (424)
Q Consensus       376 ~v-~~~~~~~~~~~~l~s~~~d-----------g~i~vw~~~~~~~~  410 (424)
                      .. .++...|+++ +++.||.+           ..+.+||+.++.+.
T Consensus       456 R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~  501 (656)
T 1k3i_A          456 RTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY  501 (656)
T ss_dssp             CBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred             cccCCeEECCCCC-EEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence            22 3445668888 78887754           46889999877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.0031  Score=63.80  Aligned_cols=238  Identities=9%  Similarity=0.001  Sum_probs=144.0

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe----------cCCCceeEEEecCCCCceEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR----------GHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ..|.++...+++.  |-.|+.++-|..++....           ....+.          -....|.++...+++.  |.
T Consensus       313 ~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lW  377 (781)
T 3v9f_A          313 ASARYIFQDSFNN--IWIGTWGGGINFISNAPP-----------TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LW  377 (781)
T ss_dssp             SCEEEEEECSSCC--EEEEEBSSCEEEECSSCC-----------SCEEEC----CCCSSCCSSSCEEEEEECTTSC--EE
T ss_pred             CeEEEEEEeCCCC--EEEEecCCeEEEeCCCCC-----------cceeeccCccccccCCCCCcceEEEEEcCCCC--EE
Confidence            5688888888775  555666677888887641           111111          0234688888877654  67


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee---cc
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV---AH  272 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~---~~  272 (424)
                      .|+.++-|..|+..+.... .+.  .........|.++...+++. +. .|+.++-|..+|.+++.    +..+.   ..
T Consensus       378 igt~~~Gl~~~~~~~~~~~-~~~--~~~~~~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~----~~~~~~~~~~  448 (781)
T 3v9f_A          378 IGTDGGGINVFENGKRVAI-YNK--ENRELLSNSVLCSLKDSEGN-LW-FGTYLGNISYYNTRLKK----FQIIELEKNE  448 (781)
T ss_dssp             EEEBSSCEEEEETTEEEEE-CC-------CCCSBEEEEEECTTSC-EE-EEETTEEEEEECSSSCE----EEECCSTTTC
T ss_pred             EEeCCCcEEEEECCCCeEE-Ecc--CCCCCCCcceEEEEECCCCC-EE-EEeccCCEEEEcCCCCc----EEEeccCCCC
Confidence            7776677888987643110 000  00012346788998887765 54 46666778899887654    22221   13


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCC-----CCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-----KEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      ...|.++...+++.  |..|+. +-|..||..+ +.........     ...|.++...+++.  |..|+.++-+..||.
T Consensus       449 ~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~  522 (781)
T 3v9f_A          449 LLDVRVFYEDKNKK--IWIGTH-AGVFVIDLAS-KKVIHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTP  522 (781)
T ss_dssp             CCCEEEEEECTTSE--EEEEET-TEEEEEESSS-SSCCEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECT
T ss_pred             CCeEEEEEECCCCC--EEEEEC-CceEEEeCCC-CeEEecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeC
Confidence            46789999888775  445555 5688999876 3322222111     36799999999885  444555333777887


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEc----CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHG----GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      ....               +..+.    -....|.++...+++. +.+++ .+|.|..|+..++.+.
T Consensus       523 ~~~~---------------~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T-~~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          523 DMQL---------------VRKFNQYEGFCSNTINQIYRSSKGQ-MWLAT-GEGLVCFPSARNFDYQ  572 (781)
T ss_dssp             TCCE---------------EEEECTTTTCSCSCEEEEEECTTSC-EEEEE-TTEEEEESCTTTCCCE
T ss_pred             CCCe---------------EEEccCCCCCCCCeeEEEEECCCCC-EEEEE-CCCceEEECCCCCcEE
Confidence            5431               11111    1134588888888888 45543 4665588888776543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.12  E-value=0.0086  Score=58.59  Aligned_cols=224  Identities=7%  Similarity=0.012  Sum_probs=141.7

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014433          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK  224 (424)
Q Consensus       146 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  224 (424)
                      ....|+..++...          .....+. ..-..+.+|+|++.+..++.+-..++.|..++++....      .....
T Consensus        13 ~~~~I~~i~l~~~----------~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~------~~v~~   76 (628)
T 4a0p_A           13 RRADIRRISLETN----------NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL------EHVVE   76 (628)
T ss_dssp             ETTEEEEEESSCT----------TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEEC
T ss_pred             eCCcEEEEECCCC----------CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc------EEEEe
Confidence            4578999998761          1111111 12346789999997775555656688999999865421      11112


Q ss_pred             cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEE-eCCCcEEEEEC
Q 014433          225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG-STDKTVKLFDL  303 (424)
Q Consensus       225 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg-~~dg~i~iwd~  303 (424)
                      ........+++.+.+.+++.+-...+.|.+.++.....   .......-.....|+++|....++.+- +..+.|...++
T Consensus        77 ~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~---~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~  153 (628)
T 4a0p_A           77 FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR---QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM  153 (628)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence            12245778999888888888877889999999975432   112223345678999999776666654 22567888887


Q ss_pred             CCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC
Q 014433          304 RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       304 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  383 (424)
                      ..  .....+...-.....|++++.+..++.+-...+.|..+++.....            +.+.   .......++++.
T Consensus       154 dG--~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~------------~v~~---~~l~~P~glav~  216 (628)
T 4a0p_A          154 DG--SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR------------EVIA---DDLPHPFGLTQY  216 (628)
T ss_dssp             TS--CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEE---ECCSCEEEEEEE
T ss_pred             CC--CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce------------EEee---ccCCCceEEEEE
Confidence            64  223333333467889999998776666666778899999865321            2221   122334567775


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCc
Q 014433          384 PCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      . + .++++-...+.|...+..++
T Consensus       217 ~-~-~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          217 Q-D-YIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             T-T-EEEEEETTTTEEEEEETTTC
T ss_pred             C-C-EEEEecCCCCEEEEEECCCC
Confidence            4 3 36666656778887776554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.0035  Score=63.37  Aligned_cols=252  Identities=8%  Similarity=0.015  Sum_probs=144.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE-----E-------ecCCCceeEEEecCCCCc
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-----L-------RGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----~-------~~h~~~v~~l~~~~~~~~  192 (424)
                      ...|.++...+++.  |..|+..+-|.+++.....        ......     +       .-....|.++...+++. 
T Consensus       257 ~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--------~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-  325 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK--LWIATELNGIMILDLQQNQ--------FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-  325 (781)
T ss_dssp             CCCEEEEEECTTSE--EEEEESSSCEEEEETTCC-----------------CEEECBCSSTTSBSSSCEEEEEECSSCC-
T ss_pred             CceEEEEEECCCCC--EEEEeCCCCeEEECCCCCe--------eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-
Confidence            35688888877774  5556664568888876521        111100     0       01245688888887665 


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCccccee----eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                       |-.|+.++-|..++....... .+....    ........|.++...+++. +. .|+.++-|..||..+.........
T Consensus       326 -lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~  401 (781)
T 3v9f_A          326 -IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFENGKRVAIYNKEN  401 (781)
T ss_dssp             -EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEETTEEEEECC---
T ss_pred             -EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEECCCCeEEEccCC
Confidence             777777778888987654211 110000    0011235688998887765 44 566666788899865331000000


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      .......|.++...+++.  |..|+.++-|..+|.++ ++ ...+.   .....|.++...+++.  |..|+.. -|..|
T Consensus       402 ~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~~-Gl~~~  474 (781)
T 3v9f_A          402 RELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKK--IWIGTHA-GVFVI  474 (781)
T ss_dssp             --CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSE--EEEEETT-EEEEE
T ss_pred             CCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCC--EEEEECC-ceEEE
Confidence            012346789999888776  55677767788998765 22 23332   2346799999988874  4445554 58889


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      |.............   ..      ......|.++...+++. +.+. +.++-|..|+..++.+
T Consensus       475 ~~~~~~~~~~~~~~---~~------~~~~~~i~~i~~d~~g~-lWig-t~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          475 DLASKKVIHHYDTS---NS------QLLENFVRSIAQDSEGR-FWIG-TFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             ESSSSSCCEEECTT---TS------SCSCSCEEEEEECTTCC-EEEE-ESSSCEEEECTTCCEE
T ss_pred             eCCCCeEEecccCc---cc------ccccceeEEEEEcCCCC-EEEE-EcCCCEEEEeCCCCeE
Confidence            87654311100000   00      01134688898998888 4444 3333477788776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.07  E-value=0.00031  Score=69.57  Aligned_cols=155  Identities=9%  Similarity=0.083  Sum_probs=85.0

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-ceeEEEecC--CCCceEEEEeC------CCcEEEEeCCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-EGYGLSWSK--FKEGHLLSGSD------DAQICLWDINA  210 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~--~~~~~l~s~~~------dg~i~iwd~~~  210 (424)
                      .+++++.++.|..+|..+          .+.+........ ....+.-+|  .+. .++++..      +|.|..+|..+
T Consensus       119 ~v~v~~~dg~l~alD~~t----------G~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~t  187 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKT----------GKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADT  187 (668)
T ss_dssp             EEEEECTTSEEEEEETTT----------CCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEECCC----------CCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCC
Confidence            566778899999999877          333444432110 000111111  123 4555543      58999999988


Q ss_pred             CCCCCcccceee-----------------e--------ecCCccEeeEEEecCCCcEEEEEeCCC---------------
Q 014433          211 APKNKSLEAMQI-----------------F--------KVHEGVVEDVAWHLRHEYLFGSVGDDQ---------------  250 (424)
Q Consensus       211 ~~~~~~~~~~~~-----------------~--------~~~~~~v~~~~~~~~~~~~~~s~~~dg---------------  250 (424)
                      ++..........                 +        .++......+++.+....+ ..+..++               
T Consensus       188 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~v-y~~~~~g~~w~~~~~~~~~gd~  266 (668)
T 1kv9_A          188 GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLL-YVGTGNGSPWNREVRSPGGGDN  266 (668)
T ss_dssp             CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHSTTCCCC
T ss_pred             CcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEE-EEeCCCCCccccCCCCCCCCCc
Confidence            865432211000                 0        0011122346788876644 4666555               


Q ss_pred             ----eEEEEEcCCCCCCCCeeeeec--cC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcc
Q 014433          251 ----YLLIWDLRTPSVSKPVQSVVA--HQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTAL  310 (424)
Q Consensus       251 ----~i~i~d~~~~~~~~~~~~~~~--~~-------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~  310 (424)
                          .|..+|.++++.   +-.+..  |.       .+.....+..+++  .+++.++.+|.++++|.++ ++++
T Consensus       267 l~~~~v~AlD~~tG~~---~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l  337 (668)
T 1kv9_A          267 LYLSSILAIRPDTGKL---AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLI  337 (668)
T ss_dssp             TTTTEEEEECTTTCCE---EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEE
T ss_pred             eeeeeEEEEcCCCCce---eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEe
Confidence                499999998874   222222  21       2222222222343  3588899999999999988 5555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.06  E-value=0.0093  Score=58.36  Aligned_cols=202  Identities=6%  Similarity=-0.004  Sum_probs=133.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..+..|+|.+.+..++.+-..++.|+.+++..          ......+........+|++.+.+..+.++-...+.|.+
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g----------~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v  106 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG----------SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEV  106 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCC----------CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEE
Confidence            45778999998777788777789999999875          11122222222346678887766655566566788999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      .++..... .     ......-.....|++.|....++.+- +..+.|...++.....    ..+...-...+.|++++.
T Consensus       107 ~~~dG~~~-~-----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~P~GlalD~~  176 (628)
T 4a0p_A          107 SKLDGQHR-Q-----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVPNVGRANGLTIDYA  176 (628)
T ss_dssp             EETTSTTC-E-----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSCSSEEEEEEETT
T ss_pred             EecCCCcE-E-----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEECCCCCcceEEEccc
Confidence            99865421 1     11112334578999999777777664 2357788888865432    222234456789999998


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +..++++-...+.|..+|+.....  ..+...-.....+++.. + .++.+-...+.|...|..++.
T Consensus       177 ~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          177 KRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred             cCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence            887777777778999999975322  33333344566788865 3 466666668888888876554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.04  E-value=3.8e-05  Score=76.38  Aligned_cols=209  Identities=8%  Similarity=0.012  Sum_probs=123.5

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...+..|+|.+.+..++++-...+.|+.+++......      ......+........+|++.+.+..++++-...+.|.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~  478 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  478 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------cceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence            3456788999876656666556788999988641100      0001111111123456777765554555555678899


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      ++++.....      ...+.........|+++|.+..++++-... +.|.++++.....   .......-...+.|+|+|
T Consensus       479 v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~  549 (699)
T 1n7d_A          479 VADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDL  549 (699)
T ss_dssp             EEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CEESCSSCSSCCCEEECT
T ss_pred             EEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eEEEeCCCCCccEEEEec
Confidence            999865421      111111224567889999777777554333 7788887764331   111112234567899999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      ++.+++++-...+.|..+|+.. . ....+..   .-.....|++..+  .++++....+.|..++..++..
T Consensus       550 ~~~~LY~aD~~~~~I~~~d~dG-~-~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          550 LSGRLYWVDSKLHSISSIDVNG-G-NRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             TTCCEEEEETTTTEEEEECSSS-S-CCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred             cCCEEEEEecCCCeEEEEccCC-C-ceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence            8877777777778999999874 2 2222221   1123445666543  4677777778899998766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0094  Score=58.26  Aligned_cols=229  Identities=7%  Similarity=-0.034  Sum_probs=134.8

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec
Q 014433          146 VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV  225 (424)
Q Consensus       146 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  225 (424)
                      ....|+..++....         .....+...-..+.+|+|++.+..++.+=...+.|..++++.....     ...+..
T Consensus        16 ~~~~I~~i~~~~~~---------~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~-----~~v~~~   81 (619)
T 3s94_A           16 NRRDLRLVDATNGK---------ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-----QNVVVS   81 (619)
T ss_dssp             CSSBEEEECCC------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C-----EEEECS
T ss_pred             ccccEEEEeCCCCc---------ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce-----EEEEeC
Confidence            35678888887510         0111122234457899999877644445445678888888654210     111222


Q ss_pred             CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECC
Q 014433          226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLR  304 (424)
Q Consensus       226 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~  304 (424)
                      .-.....+++.+.+..++.+-...+.|.+.++.....   .......-.....|+++|.+.+++++-- ..+.|...++.
T Consensus        82 ~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~---~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A           82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE---EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            2256889999998888888888889999999976432   1122233456788999998776666642 24577777766


Q ss_pred             CCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       305 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      . ..........-...+.|++++.+..++++-...+.|..+++.......            +  ..+......++++..
T Consensus       159 G-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------------~--~~~~~~~P~gi~~~~  223 (619)
T 3s94_A          159 G-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------------V--VKGSLPHPFALTLFE  223 (619)
T ss_dssp             S-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------------------CCCEEESS
T ss_pred             C-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------------E--EeCCCCCceEEEEeC
Confidence            3 222222222345678999999876666666667788888886432111            1  111122245677765


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCcc
Q 014433          385 CEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       385 ~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      +  .++++-...+.|...+..++.
T Consensus       224 ~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          224 D--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             S--EEEEECTTTCSEEEEESSSCC
T ss_pred             C--EEEEecCCCCEEEEEECCCCc
Confidence            5  366666667778888876653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=0.00073  Score=63.05  Aligned_cols=159  Identities=9%  Similarity=0.103  Sum_probs=100.5

Q ss_pred             cEeeEEEec-CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC----cEEEEEC
Q 014433          229 VVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK----TVKLFDL  303 (424)
Q Consensus       229 ~v~~~~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg----~i~iwd~  303 (424)
                      ....|+++| ++..++++-.. +.|+.+|+....    +..+.........|+|++++..++++...++    .+.+++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTE----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCE----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            457889998 45567655443 889999987654    3333334566889999999986666654333    3444443


Q ss_pred             CCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC
Q 014433          304 RKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       304 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  383 (424)
                      .........+.. ......++++|+...++++-..++.|..++......            ..+..... ......++|+
T Consensus       213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------~~~~~~~~-~~~P~gia~~  278 (430)
T 3tc9_A          213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------TPLFTIQD-SGWEFHIQFH  278 (430)
T ss_dssp             GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------EEEEECSS-SSCCEEEEEC
T ss_pred             CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------EEEEEcCC-CCcceeEEEc
Confidence            321111122221 234577899994445777766788999999875311            11222222 2346789999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCC
Q 014433          384 PCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       384 ~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      |++++++++-...+.|..++...
T Consensus       279 pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          279 PSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEEEEEECCCCEEEEEeCCc
Confidence            99997777777888999988763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.91  E-value=0.0016  Score=63.04  Aligned_cols=157  Identities=12%  Similarity=0.049  Sum_probs=82.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-ceeEEEecC--CCCceEEEEeC------CCcEEEEeCCC
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-EGYGLSWSK--FKEGHLLSGSD------DAQICLWDINA  210 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~--~~~~~l~s~~~------dg~i~iwd~~~  210 (424)
                      .+.+++.++.|..+|..+          .+.......... ....+.-+|  .+. .+++++.      +|.|..+|..+
T Consensus       117 ~v~v~~~dg~l~alD~~t----------G~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~t  185 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKT----------GKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKT  185 (571)
T ss_dssp             EEEEECTTSEEEEEETTT----------CCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTT
T ss_pred             EEEEEeCCCEEEEEECCC----------CCEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCC
Confidence            566677889999999876          333333321110 000111111  133 4555554      78999999998


Q ss_pred             CCCCCcccceeee-ec-----------------------------C-Cc-cEeeEEEecCCCcEEEEEeCC---------
Q 014433          211 APKNKSLEAMQIF-KV-----------------------------H-EG-VVEDVAWHLRHEYLFGSVGDD---------  249 (424)
Q Consensus       211 ~~~~~~~~~~~~~-~~-----------------------------~-~~-~v~~~~~~~~~~~~~~s~~~d---------  249 (424)
                      ++........... ..                             + .. ....+++.+....++ .+..+         
T Consensus       186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~  264 (571)
T 2ad6_A          186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMR  264 (571)
T ss_dssp             CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGS
T ss_pred             CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCcc
Confidence            8653322111000 00                             0 00 012356666655554 34321         


Q ss_pred             -------CeEEEEEcCCCCCCCCeeeeec--cC--------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcc
Q 014433          250 -------QYLLIWDLRTPSVSKPVQSVVA--HQ--------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTAL  310 (424)
Q Consensus       250 -------g~i~i~d~~~~~~~~~~~~~~~--~~--------~~v~~v~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~  310 (424)
                             +.|..+|.++++.   +-.++.  |.        .++. +....+|+  .+++.++.+|.++++|..+ ++.+
T Consensus       265 ~gd~~y~~~v~Ald~~tG~~---~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~  339 (571)
T 2ad6_A          265 PGDNKWTMTIWGRDLDTGMA---KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLI  339 (571)
T ss_dssp             CSCCTTTTEEEEEETTTCCE---EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT-CCEE
T ss_pred             CCCceeEEEEEEEecCCCcE---EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC-CCEE
Confidence                   3699999998774   222221  11        2221 22223453  4677888999999999987 5555


Q ss_pred             eEe
Q 014433          311 HTF  313 (424)
Q Consensus       311 ~~~  313 (424)
                      ..+
T Consensus       340 w~~  342 (571)
T 2ad6_A          340 VAE  342 (571)
T ss_dssp             EEE
T ss_pred             eee
Confidence            443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.90  E-value=0.0031  Score=58.78  Aligned_cols=206  Identities=12%  Similarity=0.082  Sum_probs=117.7

Q ss_pred             ceeEEEecCC-CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC---Ce-EEE
Q 014433          180 EGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---QY-LLI  254 (424)
Q Consensus       180 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---g~-i~i  254 (424)
                      ...+|+|.|+ ..+.|+.+...+.|+.+|+.++.       +..+.........+++++++. ++++....   .. +..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEE
Confidence            4568999985 22246666555899999986542       222222345688999999998 76554321   12 333


Q ss_pred             EEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-c-CCCCCEEEEEEcCCCCcE
Q 014433          255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-D-SHKEEVFQVGWNPKNETI  332 (424)
Q Consensus       255 ~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~-~h~~~v~~~~~sp~~~~~  332 (424)
                      ++.....  .....+ ........++++|.+..++++-..++.|+.+|..+ +.....+ . .....-..++|+|++..+
T Consensus       212 ~~~~~~~--~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          212 FTRASGF--TERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             ECGGGTT--CCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             EECCCCe--eccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            3332221  111111 12345677889994444666666678899999875 3331222 1 112233579999999756


Q ss_pred             EEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE------------cCCCCCcceEEe---------CCCCCcEEE
Q 014433          333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH------------GGHTSKISDFSW---------NPCEDWVIS  391 (424)
Q Consensus       333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~~h~~~v~~~~~---------~~~~~~~l~  391 (424)
                      +++-...+.|..+++........       .+..+.-.            ...-.....+++         .+++. +++
T Consensus       288 Yvad~~~~~I~~~~~d~~~~~~~-------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyv  359 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYNRETGKLA-------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYF  359 (433)
T ss_dssp             EEEETTTTEEEEEEBCTTTCCBC-------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEE
T ss_pred             EEEeCCCCEEEEEeCCCCCcccC-------cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEE
Confidence            66666778899988653211000       00000000            001123566888         66666 677


Q ss_pred             EEeCCCcEEEEecC
Q 014433          392 SVAEDNILQIWQMA  405 (424)
Q Consensus       392 s~~~dg~i~vw~~~  405 (424)
                      +-...++|+.++..
T Consensus       360 aD~~n~~I~~~~~~  373 (433)
T 4hw6_A          360 CDRDSHTVRVLTPE  373 (433)
T ss_dssp             EETTTTEEEEECTT
T ss_pred             EECCCCEEEEECCC
Confidence            76677889888864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.87  E-value=0.0023  Score=56.36  Aligned_cols=207  Identities=10%  Similarity=0.073  Sum_probs=117.0

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec----CC--CceeEEEe---cCCCCceEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG----HS--TEGYGLSW---SKFKEGHLLS  196 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~---~~~~~~~l~s  196 (424)
                      -...+++|.+....++++.-..|+|..|+....        ..... .+.+    ..  ..+.+|.|   .|.+. ++++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~--------~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv   82 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ--------SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAV   82 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTC--------CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEE
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC--------eEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEE
Confidence            344578998866656666557899999998641        01101 1111    01  13578999   57644 5554


Q ss_pred             Ee-------------CCCcEEEEeCC---CCCCCCcccceeeeec-------CCccEeeEEEecCCCcEEEEEeCC-CeE
Q 014433          197 GS-------------DDAQICLWDIN---AAPKNKSLEAMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGDD-QYL  252 (424)
Q Consensus       197 ~~-------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~s~~~d-g~i  252 (424)
                      ..             .+..|..+|+.   +++............+       -....++++..++|+ .+++++.. +.|
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I  161 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAI  161 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeE
Confidence            33             26779999998   5543322110000001       113588999999986 56678777 777


Q ss_pred             EEEEcCCCCCCCCeeeee------ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CC---CCCEE
Q 014433          253 LIWDLRTPSVSKPVQSVV------AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SH---KEEVF  321 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~------~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h---~~~v~  321 (424)
                      ..++.....    +..+.      ......+.|+++|++..+++..+ .|.+..+|++.+........  +.   -....
T Consensus       162 ~rV~pdG~~----~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d  236 (334)
T 2p9w_A          162 ARVSADGKT----VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTE  236 (334)
T ss_dssp             EEECTTSCC----EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred             EEEeCCCCE----EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence            777665432    22111      11234679999999986555555 99999999985322001111  21   12233


Q ss_pred             EE-EEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          322 QV-GWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       322 ~~-~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      .+ .--.+|..+|++....+.+.+.+..
T Consensus       237 gilp~~~~G~vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          237 KIVTVPVGNESVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred             cccccccCCEEEEEEcCCCCEEEEECCC
Confidence            43 3333564446666666665555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.79  E-value=0.016  Score=52.24  Aligned_cols=240  Identities=10%  Similarity=0.051  Sum_probs=121.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCC---CCceEEEEeC
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKF---KEGHLLSGSD  199 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~~  199 (424)
                      .....++|.|++. ++++ ...|.|++++ ..         .......+   .........|+++|+   +..+.++-..
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~-~g---------~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR-EG---------RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTEEEEEE-TT---------EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCeEEEEE-CC---------CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            4567899999986 5554 5669999998 32         11111111   112346789999997   4433333332


Q ss_pred             C-----CcEEEEeCCCCCCCCcccc-eeeee---cCCccEeeEEEecCCCcEEEEEeC-------------CCeEEEEEc
Q 014433          200 D-----AQICLWDINAAPKNKSLEA-MQIFK---VHEGVVEDVAWHLRHEYLFGSVGD-------------DQYLLIWDL  257 (424)
Q Consensus       200 d-----g~i~iwd~~~~~~~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~i~d~  257 (424)
                      .     +.|..++...... ...+. +..+.   ........++|.|++. ++++.+.             .|.|.-++.
T Consensus        99 ~~~~~~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~  176 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTP  176 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred             CCCCCccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcC
Confidence            2     5677787763211 11111 11122   1112346899999985 6555432             256666665


Q ss_pred             CCCC-----------CCCCeeeeeccCCCeeEEEecC-CCCeEEEEEeCCCc--------EEEEECCC------------
Q 014433          258 RTPS-----------VSKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTDKT--------VKLFDLRK------------  305 (424)
Q Consensus       258 ~~~~-----------~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~tg~~dg~--------i~iwd~~~------------  305 (424)
                      ...-           ....+.. .++ .....++|+| .+. ++++-.....        |.+...-.            
T Consensus       177 dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~  253 (352)
T 2ism_A          177 EGEPAPGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGN  253 (352)
T ss_dssp             TSSBCTTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCC
T ss_pred             CCCCCCCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCC
Confidence            4310           0001111 122 2356789999 555 5554333222        44332111            


Q ss_pred             ---CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433          306 ---ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW  382 (424)
Q Consensus       306 ---~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  382 (424)
                         ...++..+.. ......++|. ++ .++++.-..+.|...++.........       ......+. -...+.++++
T Consensus       254 ~~~~~~p~~~~~~-~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~-------~~~~~~~~-~~~rp~~v~~  322 (352)
T 2ism_A          254 DPRYRDPLYFWPQ-GFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRV-------LRVETALS-GFGRLREVQV  322 (352)
T ss_dssp             CTTSCCCSEECTT-CCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEE-------EEEEEEEE-SSCCEEEEEE
T ss_pred             CCCCcCCeEecCC-CCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceee-------cchheecc-cCCCeeEEEE
Confidence               0123444432 3456778883 45 46666666677777776543210000       00011112 2356899999


Q ss_pred             CCCCCcEEEEEe
Q 014433          383 NPCEDWVISSVA  394 (424)
Q Consensus       383 ~~~~~~~l~s~~  394 (424)
                      .|+|. ++++..
T Consensus       323 ~pdG~-lyv~~~  333 (352)
T 2ism_A          323 GPDGA-LYVTTS  333 (352)
T ss_dssp             CTTSC-EEEEEC
T ss_pred             CCCCc-EEEEEe
Confidence            99998 555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.77  E-value=0.0065  Score=60.12  Aligned_cols=54  Identities=6%  Similarity=-0.000  Sum_probs=37.0

Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +|.|..||+++ ++.+-....+ .++....+...+. +++.++.|+.++.||.+++.
T Consensus       437 ~g~l~A~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVK-QKAAWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTT-TEEEEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCC-CcEEEEccCC-CCCcCceeEeCCC-EEEEECCcccchhhhhhcCh
Confidence            47899999988 5655555432 2333333444454 67788999999999998864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.75  E-value=0.0068  Score=58.70  Aligned_cols=54  Identities=17%  Similarity=0.040  Sum_probs=35.1

Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +|.|..||+.+ ++.+-++... ..+.+......+. +++.++.||.|+.||.++++
T Consensus       443 ~g~l~a~D~~t-G~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          443 MGQIRAFDLTT-GKAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             CEEEEEECTTT-CCEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCC
T ss_pred             CCeEEEEECCC-CCEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCC
Confidence            57899999987 5555555432 2222222222343 56678999999999998864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.73  E-value=0.00032  Score=69.45  Aligned_cols=234  Identities=6%  Similarity=-0.095  Sum_probs=115.8

Q ss_pred             eeEEEecCCCCcEEEEEe-CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe-CC-----
Q 014433          128 VNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD-----  200 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d-----  200 (424)
                      ..++++.+++. +++.|+ .+..+.+||..+        ..+.....+.. ...-.+++..+++. +++.|+ .+     
T Consensus       245 ~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t--------~~W~~~~~~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          245 CPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS--------DSWIPGPDMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFE  313 (656)
T ss_dssp             SCEEEECTTSC-EEEECSSSTTCEEEEEGGG--------TEEEECCCCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCC
T ss_pred             cccccCCCCCC-EEEeCCCCCCceEEecCcC--------CceeECCCCCc-cccccceEEecCCe-EEEEeCcccCCccc
Confidence            33466777776 777777 456899999876        22222211111 11123445556676 677777 34     


Q ss_pred             CcEEEEeCCCCCCCCcccce-----eeeecCCccEeeEEEecCCCcEEEEEeCC---------CeEEEEEcCCCCCCCCe
Q 014433          201 AQICLWDINAAPKNKSLEAM-----QIFKVHEGVVEDVAWHLRHEYLFGSVGDD---------QYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---------g~i~i~d~~~~~~~~~~  266 (424)
                      ..+.+||..+..-    ..+     ..+.....   ...+..++ .+++.++.+         ..+..||..+.....+.
T Consensus       314 ~~~e~yd~~t~~W----~~~~~~~~~p~~~~~~---~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~  385 (656)
T 1k3i_A          314 KNGEVYSPSSKTW----TSLPNAKVNPMLTADK---QGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA  385 (656)
T ss_dssp             CCEEEEETTTTEE----EEETTSCSGGGCCCCT---TGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred             ccceEeCCCCCcc----eeCCCccccccccccc---cceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecC
Confidence            5689999876421    111     00000000   01111222 344455444         45678888775421111


Q ss_pred             eeeec------cCCCeeEEEecCCCCeEEEEEeCCC-----------cEEEEECCCCCCcceEe--cCCCCC-EEEEEEc
Q 014433          267 QSVVA------HQSEVNCLAFNPFNEWILATGSTDK-----------TVKLFDLRKISTALHTF--DSHKEE-VFQVGWN  326 (424)
Q Consensus       267 ~~~~~------~~~~v~~v~~~~~~~~~l~tg~~dg-----------~i~iwd~~~~~~~~~~~--~~h~~~-v~~~~~s  326 (424)
                      .....      ....-.++.|...+..+++.|+.++           .|.+||..+. .-....  ..+... -.+++..
T Consensus       386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS-PNTVFASNGLYFARTFHTSVVL  464 (656)
T ss_dssp             EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC-CEEEECTTCCSSCCBSCEEEEC
T ss_pred             CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC-CeeEEccCCCCCCcccCCeEEC
Confidence            11110      0112345555444455888888542           5778887652 211111  112222 2345667


Q ss_pred             CCCCcEEEEEECC-----------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014433          327 PKNETILASCCLG-----------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE  395 (424)
Q Consensus       327 p~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  395 (424)
                      |++. +++.|+.+           ..+.+||..+..-..            +..............+.|+++ +++.||.
T Consensus       465 ~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~------------~~~~~~~R~~hs~a~ll~dg~-v~v~GG~  530 (656)
T 1k3i_A          465 PDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK------------QNPNSIVRVYHSISLLLPDGR-VFNGGGG  530 (656)
T ss_dssp             TTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE------------CCCCSSCCCTTEEEEECTTSC-EEEEECC
T ss_pred             CCCC-EEEECCcccCcCcCCCCcccceEEEcCCCCceee------------cCCCCCccccccHhhcCCCcE-EEecCCC
Confidence            7885 78888754           457888886532111            000011111122345678898 7888774

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.70  E-value=0.017  Score=55.95  Aligned_cols=59  Identities=10%  Similarity=-0.024  Sum_probs=36.7

Q ss_pred             CeEEEEEcCCCCCCCCeeeee--ccC--------CCeeEEEec-CCCC--eEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433          250 QYLLIWDLRTPSVSKPVQSVV--AHQ--------SEVNCLAFN-PFNE--WILATGSTDKTVKLFDLRKISTALHTF  313 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~--~~~--------~~v~~v~~~-~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~  313 (424)
                      +.|..+|.++++.   +-.++  .|.        .++. +... .+|+  .+++.++.+|.++++|.++ ++++..+
T Consensus       291 ~~v~AlD~~TG~~---~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~  362 (582)
T 1flg_A          291 SGQVGVDPSSGEV---KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN-GKLQNAF  362 (582)
T ss_dssp             SEEEEECTTTCCE---EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred             ceEEEEeCCCCCE---EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC-CCEeccc
Confidence            6899999999875   22222  121        1221 2221 3453  3688899999999999987 5555443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.00071  Score=63.57  Aligned_cols=171  Identities=12%  Similarity=0.094  Sum_probs=102.4

Q ss_pred             cEeeEEEec-CCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----cCCCeeEEEe-------cCCCCeEEEEEeCCC
Q 014433          229 VVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----HQSEVNCLAF-------NPFNEWILATGSTDK  296 (424)
Q Consensus       229 ~v~~~~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~v~~-------~~~~~~~l~tg~~dg  296 (424)
                      ....|+|+| ++.+|+++....+.|++.|+..+..    ..+..    .......|+|       ++++.+++++-..++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v----~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML----SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE----EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE----EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            467899998 4667877766667899999987653    22221    1235789999       999986565554442


Q ss_pred             ------cEEEEECCCCCCcc-----eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC-------CCCcccCCCC
Q 014433          297 ------TVKLFDLRKISTAL-----HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS-------RIDEEQTPED  358 (424)
Q Consensus       297 ------~i~iwd~~~~~~~~-----~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~  358 (424)
                            .|.+++....+...     ..+.. -.....++.+|++..++++-..++.|..+|+.       .+..-.....
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  37777633311211     22221 12446788999766777777788899999987       3221000000


Q ss_pred             cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      ...+....++.. +.....+.++|+|++..++++-.....|+.+++.
T Consensus       295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            000000122222 2234467899999999666666677888886653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.64  E-value=0.02  Score=50.91  Aligned_cols=191  Identities=9%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC----CC---cEEEEEeC--CCeEEEEEcCCCCCC
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HE---YLFGSVGD--DQYLLIWDLRTPSVS  263 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~~~~s~~~--dg~i~i~d~~~~~~~  263 (424)
                      +++.....+-+.+||+ +++      .+..+.  .+.++.+..-|.    ++   ..+++.-.  +++|.+|++..... 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~------~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-  111 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGK------MLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSC------EEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-
T ss_pred             EEEEEcCCCCEEEEcC-CCc------EEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-
Confidence            5777778889999999 442      223332  245666666552    11   22444444  68999998742211 


Q ss_pred             CCeeeeec------cC-CCeeEEEe--cCC-CCeEEEEEeCCCcEEEEECCCC------CCcceEecCCCCCEEEEEEcC
Q 014433          264 KPVQSVVA------HQ-SEVNCLAF--NPF-NEWILATGSTDKTVKLFDLRKI------STALHTFDSHKEEVFQVGWNP  327 (424)
Q Consensus       264 ~~~~~~~~------~~-~~v~~v~~--~~~-~~~~l~tg~~dg~i~iwd~~~~------~~~~~~~~~h~~~v~~~~~sp  327 (424)
                       ++..+..      .. ..+..+++  +|. +..++++...+|.+..|++...      .+.++++.. .+.+-.+...+
T Consensus       112 -~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd  189 (355)
T 3amr_A          112 -TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD  189 (355)
T ss_dssp             -CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET
T ss_pred             -ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC
Confidence             2333311      11 45666777  664 4445777778899999998421      245666665 46788899988


Q ss_pred             CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc-CC-CCCcceEEe--CCCCC-cEEEEEeCCCcEEEE
Q 014433          328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GH-TSKISDFSW--NPCED-WVISSVAEDNILQIW  402 (424)
Q Consensus       328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~v~~~~~--~~~~~-~~l~s~~~dg~i~vw  402 (424)
                      ... .|+.+-.+.-|..++......         ....++.... ++ ...+..+++  .++++ |+|+|+-.++.+.||
T Consensus       190 ~~g-~Lyv~eEd~GIw~~da~p~~~---------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          190 EYG-RLYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             TTT-EEEEEETTTEEEEEECSTTSC---------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CCC-eEEEecccceEEEEeCCcCCC---------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            775 577888886555555432110         0113343332 22 235777877  55556 678887678899999


Q ss_pred             ecC
Q 014433          403 QMA  405 (424)
Q Consensus       403 ~~~  405 (424)
                      +..
T Consensus       260 dr~  262 (355)
T 3amr_A          260 DRQ  262 (355)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.58  E-value=0.015  Score=51.28  Aligned_cols=162  Identities=11%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             EecCCCceeEEEecCCCCceEEEEe-CCCcEEEEeCCCCCCCCcccceeeeec------CCccEeeEEE---ecCCCcEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKV------HEGVVEDVAW---HLRHEYLF  243 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~---~~~~~~~~  243 (424)
                      +.....-.-+++|.+... .|..++ ..++|..|+...+...    .+ .+..      ....+..|.|   .|.+ .|+
T Consensus         8 ~~~~~~yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~----~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~   80 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHF----NV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLF   80 (334)
T ss_dssp             ECCTTCCCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEE----EE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEE
T ss_pred             ecCcccCCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEE----EE-ecCCccccCCCcceeeEEEEeccCCCC-cEE
Confidence            344444456789988666 455555 7999999998644211    11 1111      1124689999   5775 466


Q ss_pred             EEEe-------------CCCeEEEEEcC---CCCCCCCeeeee--c-----------cCCCeeEEEecCCCCeEEEEEeC
Q 014433          244 GSVG-------------DDQYLLIWDLR---TPSVSKPVQSVV--A-----------HQSEVNCLAFNPFNEWILATGST  294 (424)
Q Consensus       244 ~s~~-------------~dg~i~i~d~~---~~~~~~~~~~~~--~-----------~~~~v~~v~~~~~~~~~l~tg~~  294 (424)
                      ++..             .+..|..||+.   +++.   +....  .           -......++..++|. ..++++.
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~  156 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP---VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFAL  156 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEE
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCE---EEEecCccccccccccccccccCCceeEECCCCC-EEEeCCC
Confidence            5433             26789999998   5553   22221  1           112478999999987 6777877


Q ss_pred             C-CcEEEEECCCCCCcceEec------CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          295 D-KTVKLFDLRKISTALHTFD------SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       295 d-g~i~iwd~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      . +.|..++...  +.+..+.      ......+.|+++|++.. |++....|.+..+|+..
T Consensus       157 ~~~~I~rV~pdG--~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          157 GMPAIARVSADG--KTVSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SSCEEEEECTTS--CCEEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESSSSSEEEEECSS
T ss_pred             CCCeEEEEeCCC--CEEeeeeecCCCcccccCcceEEEeCCCCE-EEEEcCCCeEEEEcCCC
Confidence            7 7777776653  2233221      11234679999999975 44444499999999883

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.56  E-value=0.039  Score=53.52  Aligned_cols=81  Identities=6%  Similarity=0.066  Sum_probs=46.7

Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT  374 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~  374 (424)
                      +|.|..||+++ ++.+-+.... .++..-.....+. +++.++.||.++.||.++++              .+..+....
T Consensus       465 ~G~l~A~D~~t-G~~~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~--------------~lW~~~~~~  527 (582)
T 1flg_A          465 VGSLRAMDPVS-GKVVWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGK--------------ELWKFQTGS  527 (582)
T ss_dssp             SEEEEEECTTT-CCEEEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCC--------------EEEEEECSS
T ss_pred             cceEEEEECCC-CCEEEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCC--------------EEEEecCCC
Confidence            57899999988 5555444432 1221111112243 67779999999999999874              344444332


Q ss_pred             CC-cceEEeCCCCCcEEEE
Q 014433          375 SK-ISDFSWNPCEDWVISS  392 (424)
Q Consensus       375 ~~-v~~~~~~~~~~~~l~s  392 (424)
                      .. ..-+.|..+|+..+++
T Consensus       528 g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          528 GIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             CCCSCCEEEEETTEEEEEE
T ss_pred             CcccCceEEEECCEEEEEE
Confidence            21 1226666777743443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.55  E-value=0.027  Score=54.68  Aligned_cols=59  Identities=10%  Similarity=-0.026  Sum_probs=36.2

Q ss_pred             CeEEEEEcCCCCCCCCeeeeec--cC--------CCeeEEEec-CCCC--eEEEEEeCCCcEEEEECCCCCCcceEe
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVA--HQ--------SEVNCLAFN-PFNE--WILATGSTDKTVKLFDLRKISTALHTF  313 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~--~~--------~~v~~v~~~-~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~  313 (424)
                      +.|..+|.++++.   +-.++.  |.        .++. +... .+|+  .+++.++.+|.++++|.++ ++++...
T Consensus       278 ~sv~Ald~~TG~~---~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEA---KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD-GALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCE---EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred             ceEEEEeCCCCce---eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC-CCEeecc
Confidence            4799999998874   222222  21        1121 2222 3453  4677889999999999988 5655443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.52  E-value=0.078  Score=51.45  Aligned_cols=54  Identities=11%  Similarity=-0.008  Sum_probs=33.2

Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .|.|..||+++ ++.+-.... ..++..-.....+. +++.++.|+.++.||.++++
T Consensus       452 ~G~l~A~D~~t-G~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          452 LGQIKAYNAIT-GDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEECTTT-CCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCC
T ss_pred             cCeEEEEECCC-CCEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCC
Confidence            46788888887 555444432 11221111122343 56778999999999999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.026  Score=50.72  Aligned_cols=194  Identities=11%  Similarity=0.114  Sum_probs=107.9

Q ss_pred             eeEEEecCCCCceEEEEe-------------CCCcEEEEeCCCCCCCCcccceee----eecCCccEeeEEEec--CCC-
Q 014433          181 GYGLSWSKFKEGHLLSGS-------------DDAQICLWDINAAPKNKSLEAMQI----FKVHEGVVEDVAWHL--RHE-  240 (424)
Q Consensus       181 v~~l~~~~~~~~~l~s~~-------------~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~--~~~-  240 (424)
                      .-.+...|+|  ++++++             .+|.|.++|+++....  ...+..    +.........|.+.+  ++. 
T Consensus        52 ~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~--~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           52 SEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCC--EEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             cceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc--eEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            4456666754  344443             6899999999743211  111111    111223566777655  333 


Q ss_pred             cEEEEEeC--CCeEEEEEcCCCCC-CCCeeeeecc-CCCeeEEEecCCCCeEEEEEeC-----------------CCcEE
Q 014433          241 YLFGSVGD--DQYLLIWDLRTPSV-SKPVQSVVAH-QSEVNCLAFNPFNEWILATGST-----------------DKTVK  299 (424)
Q Consensus       241 ~~~~s~~~--dg~i~i~d~~~~~~-~~~~~~~~~~-~~~v~~v~~~~~~~~~l~tg~~-----------------dg~i~  299 (424)
                      +++++-..  +.+|.+|++..... ...+..+.+. -...+.+.+.++|. +.++...                 .|.|.
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEE
Confidence            46655444  56788888775432 1112222221 23578899999887 4555431                 24455


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      -+|..   + +..+...-...+.++|+|+++.++++-+..+.|..|++......           .....+. .....-.
T Consensus       207 r~d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l-----------~~~~~~~-~~g~PDG  270 (355)
T 3sre_A          207 YYSPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-----------TPLRVLS-FDTLVDN  270 (355)
T ss_dssp             EECTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE-----------EEEEEEE-CSSEEEE
T ss_pred             EEECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE-----------ecCEEEe-CCCCCce
Confidence            55542   2 22222223457899999999877777777899999998642110           1111121 1344677


Q ss_pred             EEeCC-CCCcEEEEEeCC
Q 014433          380 FSWNP-CEDWVISSVAED  396 (424)
Q Consensus       380 ~~~~~-~~~~~l~s~~~d  396 (424)
                      ++..+ +|. +.+++..+
T Consensus       271 i~vD~e~G~-lwva~~~~  287 (355)
T 3sre_A          271 ISVDPVTGD-LWVGCHPN  287 (355)
T ss_dssp             EEECTTTCC-EEEEEESC
T ss_pred             EEEeCCCCc-EEEEecCC
Confidence            88998 588 56655433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.43  E-value=0.11  Score=50.84  Aligned_cols=161  Identities=7%  Similarity=0.005  Sum_probs=104.7

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ..+.+|+|.+.+..++++-...+.|..+++.....      .......-.....+++...+.+++.+-+..+.|.+.++.
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~------~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~  422 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS------QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN  422 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc------EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCC
Confidence            45788999986664445545678899998875321      111222234677899998777888887788999999987


Q ss_pred             CCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE
Q 014433          259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      ....   .......-.....|+++|....++++-.. .+.|...++.. ..........-...+.|++++.+..++++-+
T Consensus       423 G~~~---~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~  498 (619)
T 3s94_A          423 GTMR---KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLVNTSLGWPNGLALDYDEGKIYWGDA  498 (619)
T ss_dssp             SCSC---EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             CCeE---EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence            6431   11222234568999999976656665422 35677777653 2222222323457789999997766666656


Q ss_pred             CCCeEEEeeCCC
Q 014433          338 LGRRLMVWDLSR  349 (424)
Q Consensus       338 ~dg~i~iwd~~~  349 (424)
                      ..+.|..+++..
T Consensus       499 ~~~~I~~~~~dG  510 (619)
T 3s94_A          499 KTDKIEVMNTDG  510 (619)
T ss_dssp             TTTEEEEEESSS
T ss_pred             CCCEEEEEecCC
Confidence            677898888854

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.063  Score=48.19  Aligned_cols=194  Identities=13%  Similarity=0.190  Sum_probs=111.9

Q ss_pred             ceeEEEecCCCCcEEEEE------------eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecC-
Q 014433          127 EVNRARYMPQNPFLIATK------------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSK-  188 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg------------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~-  188 (424)
                      ..-.+...|+|. +++++            ..+|.|.++|..+....      .. ...+.+     ......++.+.+ 
T Consensus        51 G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~------~~-~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           51 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA------VS-ELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             CCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCC------EE-ECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             CcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCc------eE-EEEccCCCCCcCceeeeeeEEEEC
Confidence            445666778663 33333            26899999998742111      11 112322     223567777765 


Q ss_pred             -CCCceEEEEe-C--CCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEe----------------
Q 014433          189 -FKEGHLLSGS-D--DAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVG----------------  247 (424)
Q Consensus       189 -~~~~~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~----------------  247 (424)
                       ++..+|+++. .  +.+|.+|++.....  ....+..+.+. -...+++.+.+++. ++++..                
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~  199 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLG  199 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTT
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhcc
Confidence             3443455543 2  46788888765432  22333344332 24688999999886 444543                


Q ss_pred             -CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEE
Q 014433          248 -DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVG  324 (424)
Q Consensus       248 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~  324 (424)
                       ..|.|..+|.  ++    +..+...-...+.|+|+|+++.++++-+..+.|..|++...+..  ...+. .....-.++
T Consensus       200 ~~~g~vyr~d~--~~----~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~  272 (355)
T 3sre_A          200 LAWSFVTYYSP--ND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNIS  272 (355)
T ss_dssp             CCCEEEEEECT--TC----CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEE
T ss_pred             CCccEEEEEEC--Ce----EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEE
Confidence             1244555554  22    22232334567899999999987777777899999999743322  22332 245678899


Q ss_pred             EcC-CCCcEEEEEECC
Q 014433          325 WNP-KNETILASCCLG  339 (424)
Q Consensus       325 ~sp-~~~~~l~s~~~d  339 (424)
                      ..+ +|. +.+++..+
T Consensus       273 vD~e~G~-lwva~~~~  287 (355)
T 3sre_A          273 VDPVTGD-LWVGCHPN  287 (355)
T ss_dssp             ECTTTCC-EEEEEESC
T ss_pred             EeCCCCc-EEEEecCC
Confidence            998 585 56655544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.37  E-value=0.029  Score=49.99  Aligned_cols=194  Identities=9%  Similarity=0.037  Sum_probs=103.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEE-EeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYV-FDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~i-w~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ++.+..+.+.+++. +++++ .+|.|+. .|--         ..+.  .....+...+.++.+.+++. +++.+ .+|.+
T Consensus       121 ~~~~~~i~~~~~~~-~~~~~-~~g~v~~S~DgG---------~tW~--~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~  185 (327)
T 2xbg_A          121 PGSPRLIKALGNGS-AEMIT-NVGAIYRTKDSG---------KNWQ--ALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSF  185 (327)
T ss_dssp             SSCEEEEEEEETTE-EEEEE-TTCCEEEESSTT---------SSEE--EEECSCCCCEEEEEECTTSC-EEEEE-TTSSE
T ss_pred             CCCeEEEEEECCCC-EEEEe-CCccEEEEcCCC---------CCCE--EeecCCCcceEEEEEcCCCc-EEEEE-CCCcE
Confidence            34567777766553 56654 4554432 2211         1121  11234456788999998765 45554 44554


Q ss_pred             EE-EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee-eccCCCeeEEEe
Q 014433          204 CL-WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAF  281 (424)
Q Consensus       204 ~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~~  281 (424)
                      .. +|-. +   .....+.  ......+..+.+.+++. ++ .++.+|.+++.+...+.....+... ......+.++++
T Consensus       186 ~~S~d~g-G---~tW~~~~--~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          186 YSTWEPG-Q---TAWEPHN--RTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             EEEECTT-C---SSCEEEE--CCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             EEEeCCC-C---CceeECC--CCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence            33 3321 1   1222221  22456788899988875 54 4556788877643222211111110 012245889999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVWDL  347 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~  347 (424)
                      .+.+. +++++ .+|.| ++.... +..-..+.   .....+.++.|.+++  .+++++.+|.|.-++-
T Consensus       258 ~~~~~-~~~~g-~~g~i-~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          258 RTPNE-VWLAG-GAGAL-LCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SSSSC-EEEEE-STTCE-EEESST-TSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred             cCCCE-EEEEe-CCCeE-EEeCCC-CcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence            88665 56555 46766 333332 33333333   224567889887554  3667778887776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.20  E-value=0.12  Score=46.63  Aligned_cols=241  Identities=10%  Similarity=0.031  Sum_probs=125.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCC---CCceEEEEe
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKF---KEGHLLSGS  198 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~  198 (424)
                      -.....++|.|++. ++++ ..+|.|++++...         . ..+..+   .........|+++|+   +. .|+.+.
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~~G---------~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g-~lyv~~   94 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLISPSG---------K-KLVASFDVANVGEAGLLGLALHPEFPKKS-WVYLYA   94 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEECSSC---------E-EEEEECCCCCSTTCSEEEEEECTTTTTSC-EEEEEE
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEeCCC---------c-eEeeccceeecCCCceeeEEeCCCCCcCC-EEEEEE
Confidence            45678899999885 5554 5669999997332         1 111111   112345789999997   44 344433


Q ss_pred             C----C----CcEEEEeCCCCCC-CCcccce-eeeec-CCccEeeEEEecCCCcEEEEEeC-------------CCeEEE
Q 014433          199 D----D----AQICLWDINAAPK-NKSLEAM-QIFKV-HEGVVEDVAWHLRHEYLFGSVGD-------------DQYLLI  254 (424)
Q Consensus       199 ~----d----g~i~iwd~~~~~~-~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~i  254 (424)
                      .    +    ..|..|+...... ....+.+ ..+.. .......|+|.|++. |+++.+.             .|.|.-
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEE
Confidence            2    3    5677777654311 0011111 11211 112346799999986 5555432             245666


Q ss_pred             EEcCCCCC------CCCeeeeeccCCCeeEEEecC-CCCeEEEEEeCCC---cEEEEECCC---------------CCCc
Q 014433          255 WDLRTPSV------SKPVQSVVAHQSEVNCLAFNP-FNEWILATGSTDK---TVKLFDLRK---------------ISTA  309 (424)
Q Consensus       255 ~d~~~~~~------~~~~~~~~~~~~~v~~v~~~~-~~~~~l~tg~~dg---~i~iwd~~~---------------~~~~  309 (424)
                      ++....-.      ...+. ..++ .....++|+| .+. ++++-....   .|.+...-.               ...+
T Consensus       174 i~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             ECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             EcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCC
Confidence            65543100      00111 1223 2356899999 555 554433221   244332110               0124


Q ss_pred             ceEecCCCCCEEEEEEc-------CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe
Q 014433          310 LHTFDSHKEEVFQVGWN-------PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW  382 (424)
Q Consensus       310 ~~~~~~h~~~v~~~~~s-------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  382 (424)
                      +..+.........++|.       .++ .++++.-..+.|...++.......          .....+.+-...+.++++
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~----------~~~~~~~~~~~rp~~v~~  319 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVR----------KISTFFKNVFGRLRDVVI  319 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEE----------EEEEECTTTSCCEEEEEE
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCccc----------ceeeeccCCCCCeeEEEE
Confidence            44442223567888884       345 466666667788888876421100          001112222456889999


Q ss_pred             CCCCCcEEEEEe
Q 014433          383 NPCEDWVISSVA  394 (424)
Q Consensus       383 ~~~~~~~l~s~~  394 (424)
                      .|+|. ++++..
T Consensus       320 ~pDG~-lyv~~~  330 (354)
T 3a9g_A          320 DDDGG-ILISTS  330 (354)
T ss_dssp             CTTSC-EEEEEC
T ss_pred             CCCCc-EEEEEe
Confidence            99998 666653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.20  E-value=0.11  Score=46.20  Aligned_cols=234  Identities=9%  Similarity=-0.030  Sum_probs=116.3

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL  205 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  205 (424)
                      ..+.+|.|.+ + .++++ +..|.|+.- .+..       ..+........+...+..+.+.+++. ++++ +.+|.|. 
T Consensus        80 ~~~~~i~~~~-~-~~~~~-g~~g~i~~S-~DgG-------~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~-~~~g~v~-  145 (327)
T 2xbg_A           80 YRFNSVSFQG-N-EGWIV-GEPPIMLHT-TDGG-------QSWSQIPLDPKLPGSPRLIKALGNGS-AEMI-TNVGAIY-  145 (327)
T ss_dssp             CEEEEEEEET-T-EEEEE-EETTEEEEE-SSTT-------SSCEECCCCTTCSSCEEEEEEEETTE-EEEE-ETTCCEE-
T ss_pred             ccEEEEEecC-C-eEEEE-ECCCeEEEE-CCCC-------CCceECccccCCCCCeEEEEEECCCC-EEEE-eCCccEE-
Confidence            4678888886 3 35555 456655442 2210       11111111111234567777765444 4444 4456542 


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                       ....+.  .+...+  .......+..+++.+++. +++++ ..|.+..-+-..+.....+.  ......+..+++.+++
T Consensus       146 -~S~DgG--~tW~~~--~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g  216 (327)
T 2xbg_A          146 -RTKDSG--KNWQAL--VQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDG  216 (327)
T ss_dssp             -EESSTT--SSEEEE--ECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTS
T ss_pred             -EEcCCC--CCCEEe--ecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCC
Confidence             222211  222221  123455788999998765 55444 45555433211122222221  2345678899999987


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCcceEec----CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          286 EWILATGSTDKTVKLFDLRKISTALHTFD----SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~----~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      . ++ .++.+|.+++.+... +.....+.    .+...+.++++.+++. ++++ +.+|.|. +....+.          
T Consensus       217 ~-~~-~~~~~G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~g~i~-~S~DgG~----------  280 (327)
T 2xbg_A          217 R-LW-MIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNE-VWLA-GGAGALL-CSQDGGQ----------  280 (327)
T ss_dssp             C-EE-EEETTTEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSC-EEEE-ESTTCEE-EESSTTS----------
T ss_pred             C-EE-EEeCCceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCE-EEEE-eCCCeEE-EeCCCCc----------
Confidence            6 44 445678877764221 11111111    1234688999998764 5554 4466563 3332221          


Q ss_pred             CCCeeeEEEc---CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          362 GPPELLFIHG---GHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       362 ~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                          ......   .....+.++.|.+++.  ++.++.+|.|.-++-
T Consensus       281 ----tW~~~~~~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          281 ----TWQQDVDVKKVPSNFYKILFFSPDQ--GFILGQKGILLRYVT  320 (327)
T ss_dssp             ----SCEECGGGTTSSSCCCEEEEEETTE--EEEECSTTEEEEECC
T ss_pred             ----ccEEcCccCCCCCCeEEEEEECCCc--eEEEcCCceEEEEcC
Confidence                111111   1234578888875554  556677897766543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.14  E-value=0.052  Score=47.52  Aligned_cols=193  Identities=9%  Similarity=0.077  Sum_probs=90.4

Q ss_pred             ceEEEEeCC-----CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-----CeEEEEEcCCCC
Q 014433          192 GHLLSGSDD-----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----QYLLIWDLRTPS  261 (424)
Q Consensus       192 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~i~d~~~~~  261 (424)
                      .+++.|+.+     ..+.+||+.+.... ....+..+.........+.+   +..+++.|+.+     ..+.+||+.+..
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~-~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDG-VWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTC-CCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCC-eeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            366777654     46889998766410 01112111111111122222   34577777643     358889987754


Q ss_pred             CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEE
Q 014433          262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      - ..+..+......-.++.+  ++ .+++.|+.+     ..+.+||+.+.. ..+..+......-..+.+  ++ .+++.
T Consensus       140 W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~  212 (301)
T 2vpj_A          140 W-SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVV  212 (301)
T ss_dssp             E-EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEE
T ss_pred             E-EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEE
Confidence            1 122222111111222223  34 477777754     458899987621 111111111111222222  33 57777


Q ss_pred             EECC-----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC-----CcEEEEecC
Q 014433          336 CCLG-----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED-----NILQIWQMA  405 (424)
Q Consensus       336 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~  405 (424)
                      |+.+     ..+.+||+.+..-...            ............+.+  ++. +++.|+.+     ..+.+||+.
T Consensus       213 GG~~~~~~~~~v~~yd~~~~~W~~~------------~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTDSWTTV------------TSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEEE------------CCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETT
T ss_pred             eCCCCCcccceEEEEeCCCCcEEEC------------CCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCC
Confidence            7764     4588898876431110            000000011111222  455 67777655     457888888


Q ss_pred             CccCC
Q 014433          406 ENIYH  410 (424)
Q Consensus       406 ~~~~~  410 (424)
                      ++...
T Consensus       278 ~~~W~  282 (301)
T 2vpj_A          278 IDSWE  282 (301)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            76543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.00  E-value=0.14  Score=45.43  Aligned_cols=156  Identities=10%  Similarity=0.190  Sum_probs=93.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCCcEEEe------cCC-CceeEEEe--cCC-CCceEEEEeCCCcEEEEeCCCCCCC-C
Q 014433          147 SAEVYVFDYSKHPSKPPLDGACSPDLRLR------GHS-TEGYGLSW--SKF-KEGHLLSGSDDAQICLWDINAAPKN-K  215 (424)
Q Consensus       147 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~------~h~-~~v~~l~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~-~  215 (424)
                      +++|.+|++....         .++..+.      +.. ..+..+++  +|. +..++++...+|.+..|++...... .
T Consensus        98 ~n~l~vf~iDp~~---------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           98 KNTIEIYAIDGKN---------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             CCEEEEEEECTTT---------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             CCeEEEEEECCCC---------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            5799999885311         1122221      111 56777888  664 3336888888999999998543221 2


Q ss_pred             cccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCC--CCCCeeeee--ccCCCeeEEEe--cCCCC-eE
Q 014433          216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS--VSKPVQSVV--AHQSEVNCLAF--NPFNE-WI  288 (424)
Q Consensus       216 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~--~~~~~~~~~--~~~~~v~~v~~--~~~~~-~~  288 (424)
                      ..+.++.+.. .+.+..+...+....++ .+-.+.-|..+|.+...  ..+.+....  .....+..|++  .+++. ++
T Consensus       169 ~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          169 SGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             cceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence            2234455553 46788899998877776 67777667666754322  111222221  12246777777  45555 56


Q ss_pred             EEEEeCCCcEEEEECCCCCCcceEe
Q 014433          289 LATGSTDKTVKLFDLRKISTALHTF  313 (424)
Q Consensus       289 l~tg~~dg~i~iwd~~~~~~~~~~~  313 (424)
                      |++.-.+.+..+||.....+.+..|
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEE
Confidence            6666567899999997434555555

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.90  E-value=0.067  Score=46.96  Aligned_cols=233  Identities=11%  Similarity=0.040  Sum_probs=106.4

Q ss_pred             CcEEEEEeCC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC----CcEEEEeCCCC
Q 014433          138 PFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD----AQICLWDINAA  211 (424)
Q Consensus       138 ~~~latg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~iwd~~~~  211 (424)
                      ..+++.|+.+  ..+.+||..+        ..+.....+.........+.+   +..+++.|+.+    ..+.+||+.+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~--------~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKD--------YSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKD   80 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTT--------TEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred             ceEEEEeCCCCCceEEEecCCC--------CCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCC
Confidence            3466677653  5788888876        222211111111111112222   33366777654    56888888764


Q ss_pred             CCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          212 PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      .    ...+..+.........+.+   +..+++.|+.+      ..+.+||+.+..- ..+..+......-.++.+  ++
T Consensus        81 ~----W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~  150 (306)
T 3ii7_A           81 S----WYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NG  150 (306)
T ss_dssp             E----EEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT
T ss_pred             e----EEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CC
Confidence            2    1112111111111112222   34577777755      4588999887541 111111111111122222  23


Q ss_pred             CeEEEEEeC---------CCcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCCC
Q 014433          286 EWILATGST---------DKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSRI  350 (424)
Q Consensus       286 ~~~l~tg~~---------dg~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~~  350 (424)
                       .+++.|+.         -..+.+||+.+.. ..+..+......-..+.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus       151 -~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          151 -LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             -EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTT
T ss_pred             -EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCC
Confidence             46777764         3458899987621 111111111111122222  34 467676643     35788888764


Q ss_pred             CcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC-----CcEEEEecCCccCC
Q 014433          351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED-----NILQIWQMAENIYH  410 (424)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~~~~  410 (424)
                      .-....            .+.........+.+  ++. +++.|+.+     +.+.+||+.++...
T Consensus       227 ~W~~~~------------~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          227 EWKMVS------------PMPWKGVTVKCAAV--GSI-VYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             EEEECC------------CCSCCBSCCEEEEE--TTE-EEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             cEEECC------------CCCCCccceeEEEE--CCE-EEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            211110            00000111122222  444 77777744     56888998887543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.86  E-value=0.24  Score=44.50  Aligned_cols=256  Identities=11%  Similarity=0.079  Sum_probs=124.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCC---CCceEEEEeC---
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF---KEGHLLSGSD---  199 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~~l~s~~~---  199 (424)
                      .....|+|.|++..+++ +...|.|++++........-   ...+ ............|+++|+   +..+.++-+.   
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~---~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPL---SGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCC---BSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEe---cCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            45678999999863444 45679999998543110000   0000 001112345689999995   4423333222   


Q ss_pred             ----CCcEEEEeCCCCCC-CCcccce-eeee---cCCccEeeEEEecCCCcEEEEEeC-------------CCeEEEEEc
Q 014433          200 ----DAQICLWDINAAPK-NKSLEAM-QIFK---VHEGVVEDVAWHLRHEYLFGSVGD-------------DQYLLIWDL  257 (424)
Q Consensus       200 ----dg~i~iwd~~~~~~-~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~i~d~  257 (424)
                          ...|..+++..... ....+.+ ..+.   ........|+|.|++ .|+++.+.             .|.|.-++.
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence                23566666643211 0011111 1111   011124679999998 46555443             246777776


Q ss_pred             CCCCC-----------CCCeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCC-------------------
Q 014433          258 RTPSV-----------SKPVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKI-------------------  306 (424)
Q Consensus       258 ~~~~~-----------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~~-------------------  306 (424)
                      ...-.           ...+.. .++ .....++|+|....++++-. .++.=.|.-+...                   
T Consensus       172 dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          172 QGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             TSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            53200           011111 122 34678999994333444422 1211122111110                   


Q ss_pred             -----------CCcceEecCCCCCEEEEEEcC-------CCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeE
Q 014433          307 -----------STALHTFDSHKEEVFQVGWNP-------KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF  368 (424)
Q Consensus       307 -----------~~~~~~~~~h~~~v~~~~~sp-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  368 (424)
                                 ..++..+.. ...+..++|..       ++ .++++.-..+.|...++......           ....
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~-----------~~~~  316 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVT-----------EDGR  316 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEE-----------EEEE
T ss_pred             CcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEe-----------eeEE
Confidence                       112233332 34677888864       34 46666666777777776532100           0011


Q ss_pred             EEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecC
Q 014433          369 IHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMA  405 (424)
Q Consensus       369 ~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw~~~  405 (424)
                      .+.+....+.++++.|+|. ++++.. .+|  +||++.
T Consensus       317 ~~~~~~~rp~~v~~~pdG~-lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          317 ILTDRGQRIRDVRTGPDGY-LYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             ESGGGCCCEEEEEECTTSC-EEEEECSTTE--EEEEEE
T ss_pred             cccCCCCceeEEEECCCCc-EEEEEeCCCC--EEEEEe
Confidence            1122234689999999998 555433 334  566653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.85  E-value=0.22  Score=45.35  Aligned_cols=154  Identities=11%  Similarity=0.118  Sum_probs=93.0

Q ss_pred             ecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--
Q 014433          236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--  309 (424)
Q Consensus       236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--  309 (424)
                      ..++..++++  .++.||.-++.....   .+.+...    -..+..+..+|+|. +||..+ +..|.|..+......  
T Consensus        29 ~~n~t~i~~a--~~n~iR~~~i~~~~~---Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFI--QDNIIRWYNVLTDSL---YHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEE--ETTEEEEEETTTCSS---CEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEE--ECCEEEEEECCCCCc---ceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCc
Confidence            3445555533  468899888875432   3333322    23678899999998 566654 568999988732211  


Q ss_pred             ---------ceEecC------CCCCEEEEEEcCCCCc--EEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC
Q 014433          310 ---------LHTFDS------HKEEVFQVGWNPKNET--ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG  372 (424)
Q Consensus       310 ---------~~~~~~------h~~~v~~~~~sp~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (424)
                               .+.+..      ...+|..+.|+|-+..  .|++-..|+.|++||+......-.  ... .. ...+....
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~-k~-~~~fg~d~  177 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLN-KP-NNSFGLDA  177 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EES-CC-CSEEESCS
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chh-cc-ccccCCCc
Confidence                     112221      2578999999996533  788999999999999987221100  000 00 01122233


Q ss_pred             CCCCcceEEeCCCCCcEEEEEe--CCCcEEE
Q 014433          373 HTSKISDFSWNPCEDWVISSVA--EDNILQI  401 (424)
Q Consensus       373 h~~~v~~~~~~~~~~~~l~s~~--~dg~i~v  401 (424)
                      ....|.+++|..++- .|...+  ..|.|+-
T Consensus       178 ~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          178 RVNDITDLEFSKDGL-TLYCLNTTEGGDIFA  207 (452)
T ss_dssp             SCCCEEEEEECTTSS-CEEEEECTTSCEEEE
T ss_pred             ccceEEEEEEcCCCc-EEEEEecCCCCCEEE
Confidence            445688999998654 444433  6676653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.84  E-value=0.094  Score=47.21  Aligned_cols=109  Identities=13%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC---CCcEEEEEeCC-----
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDD-----  249 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~~d-----  249 (424)
                      -....+++|.|++.  |+.+...|.|.+++  .+.. ..+..+............|+++|+   +..++++-...     
T Consensus        30 l~~P~~ia~~pdG~--l~V~e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGG--MLIAERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSC--EEEEETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCe--EEEEeCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            34567999999886  55556779999998  2211 111000111122456889999998   66677665543     


Q ss_pred             CeEEEEEcCCCCCC--CCee-eee---ccCCCeeEEEecCCCCeEEEEE
Q 014433          250 QYLLIWDLRTPSVS--KPVQ-SVV---AHQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       250 g~i~i~d~~~~~~~--~~~~-~~~---~~~~~v~~v~~~~~~~~~l~tg  292 (424)
                      +.|..++.......  +.+. .+.   ........++|.|+|. ++++.
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            67888887643210  0111 122   1112346899999996 55553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.83  E-value=0.084  Score=46.21  Aligned_cols=191  Identities=10%  Similarity=0.061  Sum_probs=88.3

Q ss_pred             ceEEEEeCC-----CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC-----eEEEEEcCCCC
Q 014433          192 GHLLSGSDD-----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-----YLLIWDLRTPS  261 (424)
Q Consensus       192 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~i~d~~~~~  261 (424)
                      .+++.|+.+     ..+.+||+.+..    ...+..+.........+.+   +..+++.|+.++     .+.+||+.+..
T Consensus        63 ~lyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           63 LVFAVGGFNGSLRVRTVDSYDPVKDQ----WTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             EEEEESCBCSSSBCCCEEEEETTTTE----EEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             EEEEEeCcCCCccccceEEECCCCCc----eeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            366677654     357888886542    1111111111111112222   345777777553     47788887654


Q ss_pred             CCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-------CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEE
Q 014433          262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-------KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       262 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-------g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l  333 (424)
                      - ..+..+........++.+  ++ .+++.|+.+       ..+.+||+.+.. ..+..+.........+.+  ++ .++
T Consensus       136 W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iy  208 (302)
T 2xn4_A          136 W-FHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LLY  208 (302)
T ss_dssp             E-EEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEE
T ss_pred             E-eecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EEE
Confidence            1 111111111111222222  23 477777643       358899987521 111111111112222222  33 477


Q ss_pred             EEEECC-----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-----cEEEEe
Q 014433          334 ASCCLG-----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-----ILQIWQ  403 (424)
Q Consensus       334 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vw~  403 (424)
                      +.|+.+     ..+.+||+.+..-....            ...........+.+  ++. +++.|+.++     .+.+||
T Consensus       209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~------------~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          209 AVGGHDGPLVRKSVEVYDPTTNAWRQVA------------DMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             EECCBSSSSBCCCEEEEETTTTEEEEEC------------CCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEE
T ss_pred             EECCCCCCcccceEEEEeCCCCCEeeCC------------CCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEc
Confidence            777654     35888888764211100            00000000111222  455 677777553     489999


Q ss_pred             cCCccCCC
Q 014433          404 MAENIYHD  411 (424)
Q Consensus       404 ~~~~~~~~  411 (424)
                      +.++....
T Consensus       274 ~~~~~W~~  281 (302)
T 2xn4_A          274 PTTDKWTV  281 (302)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCeEEE
Confidence            98886654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.73  E-value=0.76  Score=48.30  Aligned_cols=149  Identities=12%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             ecCCCCceEEEEe----------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEE
Q 014433          186 WSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW  255 (424)
Q Consensus       186 ~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~  255 (424)
                      |..+...+|++|.          ..|.|.++++..    ..++.+.... ..++|++++--  +.+++++  ....|++|
T Consensus       839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~----~kL~lv~~~~-v~g~v~al~~~--~g~Lla~--ig~~l~vy  909 (1158)
T 3ei3_A          839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD----GKLQTVAEKE-VKGAVYSMVEF--NGKLLAS--INSTVRLY  909 (1158)
T ss_dssp             CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET----TEEEEEEEEE-ESSCEEEEEEE--TTEEEEE--ETTEEEEE
T ss_pred             EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC----CEEEEEEEEE-cCCcCEEEeee--CCEEEEE--cCCEEEEE
Confidence            4333345788775          357899999872    2333333322 46788888744  2356543  35789999


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCCEEEEEEcCCCCcEE
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~l  333 (424)
                      ++...+.   +..-..+-..+..+.....+. +++.|..-..|.++-.+.....+..+  ..+...++++.+-.++  .+
T Consensus       910 ~l~~~~~---L~~~~~~~~~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~--t~  983 (1158)
T 3ei3_A          910 EWTTEKE---LRTECNHYNNIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD--NF  983 (1158)
T ss_dssp             EECTTSC---EEEEEEECCCSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT--EE
T ss_pred             ECCCCce---EEEEeeccccEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC--cE
Confidence            9986542   221111111233223222355 58888887778777655422223222  3456688999987654  47


Q ss_pred             EEEECCCeEEEeeCCC
Q 014433          334 ASCCLGRRLMVWDLSR  349 (424)
Q Consensus       334 ~s~~~dg~i~iwd~~~  349 (424)
                      +.+..+|.+.+.....
T Consensus       984 l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          984 LGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEETTSEEEEEEECT
T ss_pred             EEEcCCCcEEEEecCC
Confidence            7789999999988765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.64  E-value=0.22  Score=43.87  Aligned_cols=105  Identities=9%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             CCcEEEEEeCC--------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC-C-----CcEEEEECC
Q 014433          239 HEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-D-----KTVKLFDLR  304 (424)
Q Consensus       239 ~~~~~~s~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~-d-----g~i~iwd~~  304 (424)
                      +..+++.|+.+        ..+.+||+.+..- ..+..+......-.++.+   +..+++.|+. +     ..+.+||+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCC
Confidence            34577777632        4588899887541 111111111111222222   3347777776 2     468899987


Q ss_pred             CCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECCC-----eEEEeeCCCC
Q 014433          305 KIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGR-----RLMVWDLSRI  350 (424)
Q Consensus       305 ~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-----~i~iwd~~~~  350 (424)
                      +.. ..+..+......-..+.+  ++ .+++.|+.++     .+.+||+.+.
T Consensus       174 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          174 KFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCC
Confidence            621 111111111111222222  34 4777777654     4778888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.57  E-value=0.44  Score=43.59  Aligned_cols=234  Identities=10%  Similarity=0.147  Sum_probs=143.4

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC--CCceeEEEecCCCCceEEEEeCCCcEEEEeC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH--STEGYGLSWSKFKEGHLLSGSDDAQICLWDI  208 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  208 (424)
                      .-.+|..+ +||.-. ..++.|||++.          .   ..++.|  ...|.-=.|-...  .|+..+ +..|+-|++
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnle~----------K---~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi  132 (494)
T 1bpo_A           71 AIMNPASK-VIALKA-GKTLQIFNIEM----------K---SKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSM  132 (494)
T ss_dssp             EEECSSSS-CEEEEE-TTEEEEEETTT----------T---EEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEES
T ss_pred             eeeCCCCc-EEEEec-CCeEEEEchHH----------h---hhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecc
Confidence            44567554 676654 67999999987          1   233333  3567667776543  354444 368999999


Q ss_pred             CCCCCCCcccceeeeecCC----ccEeeEEEecCCCcEEEEEe------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          209 NAAPKNKSLEAMQIFKVHE----GVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      ....     .+.+.+..|.    ..|..-..+++.+.++++|-      ..|.+.+|..+...    -+.+.+|......
T Consensus       133 ~~~s-----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          133 EGES-----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQ  203 (494)
T ss_dssp             SSSC-----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC----EEEECCSEEEEEE
T ss_pred             cCCC-----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc----cchheeeeeeeEE
Confidence            7532     2444454443    46777777888887776663      35788899987644    4556677655544


Q ss_pred             EEecCC--CCeEEEEEeCC---CcEEEEECCCC--CCcc------eEec---CCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          279 LAFNPF--NEWILATGSTD---KTVKLFDLRKI--STAL------HTFD---SHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       279 v~~~~~--~~~~l~tg~~d---g~i~iwd~~~~--~~~~------~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      +....+  ...+|+.+...   +.++|.++...  +.+.      ..+.   ....-..++..++... ++..-+.-|.|
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i  282 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYI  282 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEE
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceE
Confidence            444321  12355555543   78999998653  1111      1111   1234556788888775 78888999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++||+.++              .+++..+-....|.-.+-+..... +++....|.|.--.+++.
T Consensus       283 ~lyDleTg--------------t~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          283 HLYDLETG--------------TCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEETTTC--------------CEEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTT
T ss_pred             EEEecccc--------------eeeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccc
Confidence            99999987              445555544555555555555443 444557776665555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.53  E-value=0.36  Score=43.40  Aligned_cols=217  Identities=9%  Similarity=0.042  Sum_probs=107.2

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC---CCcEEEEEeC---C--
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGD---D--  249 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~~---d--  249 (424)
                      -....+++|.|++.  |+++..+|.|.+++. .+.  ..+..+............|+++|+   +..++++-+.   +  
T Consensus        28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR--YLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTE--EEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            34568999999875  666667799999873 221  111111111112356889999998   5667665542   3  


Q ss_pred             --CeEEEEEcCCCCC-C---CCe-eeeec-cCCCeeEEEecCCCCeEEEEEeC-------------CCcEEEEECCCCC-
Q 014433          250 --QYLLIWDLRTPSV-S---KPV-QSVVA-HQSEVNCLAFNPFNEWILATGST-------------DKTVKLFDLRKIS-  307 (424)
Q Consensus       250 --g~i~i~d~~~~~~-~---~~~-~~~~~-~~~~v~~v~~~~~~~~~l~tg~~-------------dg~i~iwd~~~~~-  307 (424)
                        ..|..|+...... .   +.+ ..+.. .......|+|.|+|. ++++-+.             .|.|.-++....- 
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence              5677777764310 0   011 11111 112356799999997 5555332             2455555544210 


Q ss_pred             --C---cceEe-cCCCCCEEEEEEcC-CCCcEEEEEECCC---eEEEeeCCCCCccc---C-CCCcCCCCCeeeEEE-cC
Q 014433          308 --T---ALHTF-DSHKEEVFQVGWNP-KNETILASCCLGR---RLMVWDLSRIDEEQ---T-PEDAEDGPPELLFIH-GG  372 (424)
Q Consensus       308 --~---~~~~~-~~h~~~v~~~~~sp-~~~~~l~s~~~dg---~i~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~-~~  372 (424)
                        .   ....+ .++ .....++|+| .+ .++++-...+   .|.+..  .+...-   . ...........+..+ ..
T Consensus       182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g-~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGH-RNPQGIDWHRASG-VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             TTSSSTTCCEEEECC-SCCCEEEECTTTC-CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCCCcEEEEcc-CCcceEEEeCCCC-CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence              0   01111 123 2356899999 55 4554433222   233322  211000   0 000000001122233 22


Q ss_pred             CCCCcceEEeC-------CCCCcEEEEEeCCCcEEEEecCC
Q 014433          373 HTSKISDFSWN-------PCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       373 h~~~v~~~~~~-------~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      | .....++|.       .++. ++++.-..+.|...++..
T Consensus       258 ~-~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          258 T-WAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             C-CCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECG
T ss_pred             C-cCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECC
Confidence            2 346777773       4565 566656667787777764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.38  E-value=0.51  Score=42.13  Aligned_cols=244  Identities=11%  Similarity=0.088  Sum_probs=124.1

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE----ecCCCceeEEEecCC---CCceEEE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL----RGHSTEGYGLSWSKF---KEGHLLS  196 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~~l~s  196 (424)
                      .-.....|+|.|++. ++++-...|.|++++...        +....+..+    .........|+++|+   +. .|+.
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~--------g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv   99 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKT--------GRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYA   99 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTT--------CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEE
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCC--------CcEeeecccCceeecCCCCceeeEeccccccCC-EEEE
Confidence            346778999999986 666644489999987543        111111111    123456789999995   33 3443


Q ss_pred             E---eCCCcEEEEeCCCCC----CCCcccc-eeeee-cCCccEeeEEEecCCCcEEEEEeC-------------CCeEEE
Q 014433          197 G---SDDAQICLWDINAAP----KNKSLEA-MQIFK-VHEGVVEDVAWHLRHEYLFGSVGD-------------DQYLLI  254 (424)
Q Consensus       197 ~---~~dg~i~iwd~~~~~----~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~i  254 (424)
                      .   ..++.|.-|.+....    .....+. +..+. ........|+|.|++. |+++.+.             .|.|.-
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlR  178 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILR  178 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEE
Confidence            2   244566666665421    1111111 11121 1112346799999985 5555442             355555


Q ss_pred             EEcCCCCC------CCCeeeeeccCCCeeEEEecCCCCeEEEEE-eCCCcEEEEECCCC-----------------CCcc
Q 014433          255 WDLRTPSV------SKPVQSVVAHQSEVNCLAFNPFNEWILATG-STDKTVKLFDLRKI-----------------STAL  310 (424)
Q Consensus       255 ~d~~~~~~------~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg-~~dg~i~iwd~~~~-----------------~~~~  310 (424)
                      ++....-.      ...+. ..+|. ....++|+|++. ++++- +.++.=.|--+...                 ..++
T Consensus       179 i~~dG~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          179 MTPDGEPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             ECTTSSBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred             EeCCCCccCCCCCCCCeEE-eeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence            55442100      00111 12332 356899999876 44432 22332222222211                 1234


Q ss_pred             eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEE
Q 014433          311 HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVI  390 (424)
Q Consensus       311 ~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  390 (424)
                      ..+..+......++|.. + .++...-..+.|....+......          ......+.+....+.+++..|+|. |+
T Consensus       256 ~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~----------~~~e~~l~~~~gR~~dv~~~pDG~-ly  322 (347)
T 3das_A          256 AQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAA----------ADPQAFLEGEYGRLRTVAPAGGDK-LW  322 (347)
T ss_dssp             EEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEES----------SCCEEESTTTSSCEEEEEEEETTE-EE
T ss_pred             EecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCcee----------cceEEeecCCCCCccEEEECCCCc-EE
Confidence            44443334667888874 3 35555555556655555432110          011122334456789999999998 55


Q ss_pred             EEEe
Q 014433          391 SSVA  394 (424)
Q Consensus       391 ~s~~  394 (424)
                      ++..
T Consensus       323 v~td  326 (347)
T 3das_A          323 LVTS  326 (347)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.30  E-value=0.3  Score=40.23  Aligned_cols=136  Identities=10%  Similarity=0.044  Sum_probs=74.8

Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeeecC--CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS  268 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~  268 (424)
                      .+|++...| +++.=....... ... .....+ +.  =..+.+++|+|++. |.++  .+|.++-.+..+... .   .
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~-~~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~-~---~   74 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKN-DNWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDN-D---N   74 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTT-CCHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTT-C---C
T ss_pred             eEEEEEeCC-cEEecCCCCCcc-cchhhhcccc-CccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCc-c---c
Confidence            367777777 665544433322 111 111111 12  24778999999775 7655  778777666544221 0   1


Q ss_pred             eeccCCC--------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-----ceEe-cCCCCCEEEEEEcCCCCcEEE
Q 014433          269 VVAHQSE--------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-----LHTF-DSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       269 ~~~~~~~--------v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-----~~~~-~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      .......        ..++.|+|+|. +.++  .||.|+-++-.+....     -..+ ..-=..+..|.+.|+|-  |.
T Consensus        75 W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~--Ly  149 (236)
T 1tl2_A           75 WMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY--LY  149 (236)
T ss_dssp             HHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC--EE
T ss_pred             ccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce--EE
Confidence            1111122        47899999987 4545  5698887775331111     0111 11114679999999994  44


Q ss_pred             EEECCCeEE
Q 014433          335 SCCLGRRLM  343 (424)
Q Consensus       335 s~~~dg~i~  343 (424)
                      +.. |+.+.
T Consensus       150 av~-dg~ly  157 (236)
T 1tl2_A          150 AVH-GQQFY  157 (236)
T ss_dssp             EEE-TTEEE
T ss_pred             EEe-CCcEE
Confidence            444 88743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.24  E-value=0.48  Score=50.05  Aligned_cols=207  Identities=13%  Similarity=0.219  Sum_probs=120.5

Q ss_pred             EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCC
Q 014433          183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV  262 (424)
Q Consensus       183 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~  262 (424)
                      +.-.+|..+ .++.-. ..++.|+|+++..+.....       ...+|.--.|-....  ++-. .+..|+-|++.... 
T Consensus        70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~-------~~e~VvfWkWis~~~--l~lV-T~~aVyHW~~~~~s-  136 (1630)
T 1xi4_A           70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWISLNT--VALV-TDNAVYHWSMEGES-  136 (1630)
T ss_pred             hhccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc-------cCCCceEEEecCCCe--eEEE-cCCeEEEeccCCCC-
Confidence            344567554 455443 6899999998765433321       245677777766543  3333 35689999997533 


Q ss_pred             CCCeeeeecc----CCCeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEc--CCCC
Q 014433          263 SKPVQSVVAH----QSEVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN--PKNE  330 (424)
Q Consensus       263 ~~~~~~~~~~----~~~v~~v~~~~~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s--p~~~  330 (424)
                       .|...+..|    ...|..-..+++.++++++|-      -.|.+.+|....  ..-+.+.+|.+.-..+...  +...
T Consensus       137 -~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~~  213 (1630)
T 1xi4_A          137 -QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEES  213 (1630)
T ss_pred             -ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCCc
Confidence             344444333    456777778899998887775      358899999875  4445566665544333332  2222


Q ss_pred             cEEEEEEC---CCeEEEeeCCCCCcc-cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          331 TILASCCL---GRRLMVWDLSRIDEE-QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       331 ~~l~s~~~---dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .+++.+..   .+.++|-++...... ....   .....+.+....-......+..++.-. ++.....-|.|.++|+.+
T Consensus       214 ~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~---kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP---KKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             eEEEEEEecCCCceEEEEecCCCccCCCCCc---cccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEeccc
Confidence            34433322   368999998653110 0000   000011111112233345566777666 677778899999999999


Q ss_pred             ccC
Q 014433          407 NIY  409 (424)
Q Consensus       407 ~~~  409 (424)
                      +..
T Consensus       290 ~~~  292 (1630)
T 1xi4_A          290 GTC  292 (1630)
T ss_pred             chh
Confidence            854

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.13  E-value=0.23  Score=43.55  Aligned_cols=149  Identities=9%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             CcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC-C
Q 014433          240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS-T  308 (424)
Q Consensus       240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~-~  308 (424)
                      ..+++.|+.+     ..+.+||+.+..- ..+..+......-.++.+   +..+++.|+.+     ..+.+||+.+.. .
T Consensus       122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  197 (308)
T 1zgk_A          122 GHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWR  197 (308)
T ss_dssp             TEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence            3576676643     4588899876541 111111111111222333   33477777754     458899987521 1


Q ss_pred             cceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeC
Q 014433          309 ALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN  383 (424)
Q Consensus       309 ~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  383 (424)
                      .+..+......-..+.+  ++ .+++.|+.+     ..+.+||+.+..-....            ...........+.+ 
T Consensus       198 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~------------~~p~~r~~~~~~~~-  261 (308)
T 1zgk_A          198 MITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVA------------PMKHRRSALGITVH-  261 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECC------------CCSSCCBSCEEEEE-
T ss_pred             eCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECC------------CCCCCccceEEEEE-
Confidence            11111111112222333  34 477777654     45888888764321110            00000011111222 


Q ss_pred             CCCCcEEEEEeCC-----CcEEEEecCCccCC
Q 014433          384 PCEDWVISSVAED-----NILQIWQMAENIYH  410 (424)
Q Consensus       384 ~~~~~~l~s~~~d-----g~i~vw~~~~~~~~  410 (424)
                       ++. +++.|+.+     ..+.+||+.++...
T Consensus       262 -~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          262 -QGR-IYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             -TTE-EEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             -CCE-EEEEcCcCCCcccceEEEEcCCCCEEe
Confidence             344 67777643     45788888877554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.12  E-value=0.71  Score=41.39  Aligned_cols=152  Identities=11%  Similarity=0.109  Sum_probs=80.9

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecC---CCcEEEEEeC------
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLR---HEYLFGSVGD------  248 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~~s~~~------  248 (424)
                      ....+|+|.|++.. |+++...|.|++++...... ..+..+ ............|+++|+   +..++++-..      
T Consensus        18 ~~P~~i~~~pdG~~-l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHG-MLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCC-EEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCE-EEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            35689999998863 66667789999998532211 111111 111122346789999996   5667666443      


Q ss_pred             -CCeEEEEEcCCCCC-CCCeeee----e---ccCCCeeEEEecCCCCeEEEEEeC-------------CCcEEEEECCCC
Q 014433          249 -DQYLLIWDLRTPSV-SKPVQSV----V---AHQSEVNCLAFNPFNEWILATGST-------------DKTVKLFDLRKI  306 (424)
Q Consensus       249 -dg~i~i~d~~~~~~-~~~~~~~----~---~~~~~v~~v~~~~~~~~~l~tg~~-------------dg~i~iwd~~~~  306 (424)
                       ...|..|++..... ......+    .   ........|+|.|+|. ++++-+.             .|.|.-+|....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             23566666653310 0001111    1   1112246799999995 5555433             246766776531


Q ss_pred             C---C--------cceEec-CCCCCEEEEEEcC-CCCcEEEE
Q 014433          307 S---T--------ALHTFD-SHKEEVFQVGWNP-KNETILAS  335 (424)
Q Consensus       307 ~---~--------~~~~~~-~h~~~v~~~~~sp-~~~~~l~s  335 (424)
                      -   .        ....+. ++ .....++|+| .+ .++++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g-~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSN-ALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTT-EEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCC-CEEEE
Confidence            0   0        111121 22 3468899999 55 44444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.11  E-value=0.45  Score=41.81  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             CcEEEEEeCC-------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC------CCcEEEEECCCC
Q 014433          240 EYLFGSVGDD-------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST------DKTVKLFDLRKI  306 (424)
Q Consensus       240 ~~~~~s~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~------dg~i~iwd~~~~  306 (424)
                      ..+++.|+.+       ..+.+||+.+..- ..+..+......-.++.  .++ .+++.|+.      -..+.+||+.+.
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKW-SEVKNLPIKVYGHNVIS--HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEE-EEECCCSSCEESCEEEE--ETT-EEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCE-eECCCCCCcccccEEEE--ECC-EEEEEcCCCCCCCccceEEEEcCCCC
Confidence            4577777754       3478888876541 11111111001111222  224 46777764      235899998762


Q ss_pred             C-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCCC
Q 014433          307 S-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSRI  350 (424)
Q Consensus       307 ~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~~  350 (424)
                      . ..+..+......-..+.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus       186 ~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          186 DWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCC
Confidence            1 111111111111122222  34 467777643     24678888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.00  E-value=0.69  Score=48.89  Aligned_cols=195  Identities=9%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             EecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCC
Q 014433          132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA  211 (424)
Q Consensus       132 ~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  211 (424)
                      -.+|..+ +||.-. ..++.|||+.+.          ....... ....|.-=.|-....  |+..+ +..|.-|++...
T Consensus        72 IMnP~~~-iiALra-g~~lQiFnl~~k----------~klks~~-~~e~VvfWkWis~~~--l~lVT-~~aVyHW~~~~~  135 (1630)
T 1xi4_A           72 IMNPASK-VIALKA-GKTLQIFNIEMK----------SKMKAHT-MTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGE  135 (1630)
T ss_pred             ccCCCcc-eEEEec-CCeEEEeehHHh----------hhhcccc-cCCCceEEEecCCCe--eEEEc-CCeEEEeccCCC
Confidence            3456553 666644 679999999871          1122222 234566667765443  44433 358999999753


Q ss_pred             CCCCcccceeeeecC----CccEeeEEEecCCCcEEEEEe------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          212 PKNKSLEAMQIFKVH----EGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       212 ~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      .     .+.+.+..|    ...|..-..+++.+.++++|-      ..|.+.+|.+..+..    +.+.+|-.....+..
T Consensus       136 s-----~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s----Q~iegha~~F~~~~~  206 (1630)
T 1xi4_A          136 S-----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPIEGHAASFAQFKM  206 (1630)
T ss_pred             C-----ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc----hhhhHhHhhhheecc
Confidence            2     223333333    356777777888887776653      458899998876542    333455444433333


Q ss_pred             c--CCCCeEEEEEeC---CCcEEEEECCCC--CCcce------EecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          282 N--PFNEWILATGST---DKTVKLFDLRKI--STALH------TFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       282 ~--~~~~~~l~tg~~---dg~i~iwd~~~~--~~~~~------~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      .  +....+++.+..   .+.++|-++...  +.+..      .+..   ...-..++..++..+ ++..-+.-|.|.+|
T Consensus       207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~  285 (1630)
T 1xi4_A          207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLY  285 (1630)
T ss_pred             CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEE
Confidence            2  112223333322   268899888543  11111      1111   123345677777664 77788889999999


Q ss_pred             eCCCCCc
Q 014433          346 DLSRIDE  352 (424)
Q Consensus       346 d~~~~~~  352 (424)
                      |+.++..
T Consensus       286 d~~t~~~  292 (1630)
T 1xi4_A          286 DLETGTC  292 (1630)
T ss_pred             ecccchh
Confidence            9999754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.89  E-value=1  Score=41.12  Aligned_cols=149  Identities=12%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---C-CceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---S-TEGYGLSWSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       135 p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h---~-~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      .++..+++.  .++.||.-++..        .  ...+.+..-   . ..+..+..+|+|. +||..+ +..|.|-.+-.
T Consensus        30 ~n~t~i~~a--~~n~iR~~~i~~--------~--~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~   95 (452)
T 3pbp_A           30 QNGTRIVFI--QDNIIRWYNVLT--------D--SLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPW   95 (452)
T ss_dssp             TTTTEEEEE--ETTEEEEEETTT--------C--SSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCT
T ss_pred             cCCCEEEEE--ECCEEEEEECCC--------C--CcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecC
Confidence            345444443  357888888875        1  123334332   2 2678899999988 566654 46889988874


Q ss_pred             CCCCCc-------ccceeeeec------CCccEeeEEEecCCCc--EEEEEeCCCeEEEEEcCCCCCCCCeeeee-----
Q 014433          211 APKNKS-------LEAMQIFKV------HEGVVEDVAWHLRHEY--LFGSVGDDQYLLIWDLRTPSVSKPVQSVV-----  270 (424)
Q Consensus       211 ~~~~~~-------~~~~~~~~~------~~~~v~~~~~~~~~~~--~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-----  270 (424)
                      +.....       ++ .+.+.-      ...+|..+.|||-+..  .+++-..|+.|++||+.... ..|. .+.     
T Consensus        96 ~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~-~~P~-~L~k~~~~  172 (452)
T 3pbp_A           96 GYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ-EKPI-VLNKPNNS  172 (452)
T ss_dssp             TCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT-SCCE-EESCCCSE
T ss_pred             ccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC-CCCc-chhccccc
Confidence            322111       11 112221      2467999999997643  56688899999999998733 2233 221     


Q ss_pred             ----ccCCCeeEEEecCCCCeEEEEEe--CCCcEEEE
Q 014433          271 ----AHQSEVNCLAFNPFNEWILATGS--TDKTVKLF  301 (424)
Q Consensus       271 ----~~~~~v~~v~~~~~~~~~l~tg~--~dg~i~iw  301 (424)
                          .....|.+++|.+++- .|...+  ..|.|+-.
T Consensus       173 fg~d~~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          173 FGLDARVNDITDLEFSKDGL-TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EESCSSCCCEEEEEECTTSS-CEEEEECTTSCEEEEE
T ss_pred             cCCCcccceEEEEEEcCCCc-EEEEEecCCCCCEEEE
Confidence                2235788999998654 355544  67777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.70  E-value=2.6  Score=44.36  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=101.5

Q ss_pred             cEEEEEEeccCCceeEEEecCCC-----CcEEEEEeC-CCeEEEEeCCCCCCCCCCCCCCCCcE--EEecCCCceeEEEe
Q 014433          115 KVQIIQQINHDGEVNRARYMPQN-----PFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDL--RLRGHSTEGYGLSW  186 (424)
Q Consensus       115 ~~~~~~~~~h~~~v~~~~~~p~~-----~~~latg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~  186 (424)
                      .+.......-.+.|.|+++.|..     ..++|+|.. |++|+|+++..          .....  .+. ......++.+
T Consensus       543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~----------l~~~~~~~L~-~~~~p~si~l  611 (1158)
T 3ei3_A          543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS----------FELLHKEMLG-GEIIPRSILM  611 (1158)
T ss_dssp             EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT----------CCEEEEEECC-SSCCEEEEEE
T ss_pred             ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC----------CCeEEEEECC-CCCCCcEEEE
Confidence            44555556667899999998642     358899996 99999999975          12121  121 1123334433


Q ss_pred             cC-CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC
Q 014433          187 SK-FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP  265 (424)
Q Consensus       187 ~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~  265 (424)
                      .. .+..+|..|-.||.+.-+.+....  ..+...+...--..++.=..+...+..-+.+++ +....+|--+. .    
T Consensus       612 ~~~~~~~~L~igl~dG~l~~~~~d~~t--g~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~-~----  683 (1158)
T 3ei3_A          612 TTFESSHYLLCALGDGALFYFGLNIET--GLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNH-K----  683 (1158)
T ss_dssp             EEETTEEEEEEEETTSEEEEEEECTTT--CCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESSS-S----
T ss_pred             EEeCCCcEEEEEeCCCeEEEEEEcCCC--CccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcCC-c----
Confidence            22 133478899999998776654321  111111111111234443334433333322333 34444444322 1    


Q ss_pred             eeeeeccCCCeeEE-EecCCC-CeEEEEEeCCCcEEEEECCCCCC-cceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          266 VQSVVAHQSEVNCL-AFNPFN-EWILATGSTDKTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       266 ~~~~~~~~~~v~~v-~~~~~~-~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      +....-.-..+.++ .|+... +.-++.. .++.++|.-+....+ .++++.. ...+..++++|..+.+.+
T Consensus       684 l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v  753 (1158)
T 3ei3_A          684 LVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGV  753 (1158)
T ss_dssp             EEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEE
T ss_pred             eEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEE
Confidence            22111122234333 353321 1124333 355699988865332 2333333 568899999998864333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.65  E-value=0.8  Score=42.68  Aligned_cols=110  Identities=10%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             CCCceeEEEecCCCCceEEEEeCC-CcEEEEeCCCCCCCCcccceeeee------cCCccEeeEEEecC---CCcEEEEE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDD-AQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLR---HEYLFGSV  246 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~~~~s~  246 (424)
                      .-...++|+|.|++. +++ +... +.|++++...+..    ..+..+.      .....+..|+|+|+   +..++++-
T Consensus        25 ~l~~P~~~a~~pdG~-l~V-~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           25 NLNKPHALLWGPDNQ-IWL-TERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             CCSSEEEEEECTTSC-EEE-EETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCCceEEEEcCCCc-EEE-EEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            344678999999886 454 4555 4788887644321    1111111      12456789999996   66676665


Q ss_pred             eC------------CCeEEEEEcCCCCC----CCCeee-ee-ccCCCeeEEEecCCCCeEEEEE
Q 014433          247 GD------------DQYLLIWDLRTPSV----SKPVQS-VV-AHQSEVNCLAFNPFNEWILATG  292 (424)
Q Consensus       247 ~~------------dg~i~i~d~~~~~~----~~~~~~-~~-~~~~~v~~v~~~~~~~~~l~tg  292 (424)
                      +.            ...|.-++......    .+.+.. +. ........|+|.|+|..++++|
T Consensus        99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            43            23455565543210    011111 11 1123578999999997444444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.60  E-value=0.37  Score=41.96  Aligned_cols=189  Identities=13%  Similarity=0.112  Sum_probs=86.1

Q ss_pred             cEEEEEeCC-----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC-----CcEEEEeC
Q 014433          139 FLIATKTVS-----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-----AQICLWDI  208 (424)
Q Consensus       139 ~~latg~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~  208 (424)
                      .+++.|+.+     ..+.+||..+....     .+.....+.........+..  ++. +++.|+.+     ..+.+||+
T Consensus        64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~-----~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~  135 (301)
T 2vpj_A           64 RIYVIGGYDGRSRLSSVECLDYTADEDG-----VWYSVAPMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDP  135 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTCCTTC-----CCEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEET
T ss_pred             EEEEEcCCCCCccCceEEEEECCCCCCC-----eeEECCCCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcC
Confidence            477777754     46889998762100     02111111111111112222  233 56666643     35788888


Q ss_pred             CCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecC
Q 014433          209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~  283 (424)
                      .+..    ...+..+....... +++.. + ..+++.|+.+     ..+.+||+.+..- ..+..+........++.+  
T Consensus       136 ~~~~----W~~~~~~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--  205 (301)
T 2vpj_A          136 NIDQ----WSMLGDMQTAREGA-GLVVA-S-GVIYCLGGYDGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--  205 (301)
T ss_dssp             TTTE----EEEEEECSSCCBSC-EEEEE-T-TEEEEECCBCSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--
T ss_pred             CCCe----EEECCCCCCCcccc-eEEEE-C-CEEEEECCCCCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--
Confidence            6542    12222221111111 12222 3 4577777654     4588999877541 111111111111222333  


Q ss_pred             CCCeEEEEEeCC-----CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCC
Q 014433          284 FNEWILATGSTD-----KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSR  349 (424)
Q Consensus       284 ~~~~~l~tg~~d-----g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~  349 (424)
                       +..+++.|+.+     ..+.+||+.+.. ..+..+.........+.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       206 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          206 -NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             -TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTT
T ss_pred             -CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCC
Confidence             33578888764     468999987621 111111111111222222  34 467777655     3467777765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.52  E-value=0.36  Score=42.04  Aligned_cols=144  Identities=12%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             eEEEEeCCC-----cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC-------CeEEEEEcCCC
Q 014433          193 HLLSGSDDA-----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-------QYLLIWDLRTP  260 (424)
Q Consensus       193 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------g~i~i~d~~~~  260 (424)
                      +++.|+.++     .+.+||+.+..    ...+..+....... +++..  +..+++.|+.+       ..+.+||+.+.
T Consensus       111 iyv~GG~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          111 LYAVGGFDGSTGLSSVEAYNIKSNE----WFHVAPMNTRRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTE----EEEECCCSSCCBSC-EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             EEEEcCCCCCccCceEEEEeCCCCe----EeecCCCCCcccCc-eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            666666543     47788876542    11111111111111 22222  33566676542       35889998775


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEE
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILA  334 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~  334 (424)
                      .- ..+..+........++.+   +..+++.|+.+     ..+.+||+.+.. ..+..+......-..+.+  ++ .+++
T Consensus       184 ~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~-~i~v  256 (302)
T 2xn4_A          184 EW-TYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NG-LLYV  256 (302)
T ss_dssp             EE-EEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEE
T ss_pred             cE-EECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CC-EEEE
Confidence            41 111111111111222333   23478888764     368899987621 111111111111122222  34 4677


Q ss_pred             EEECCC-----eEEEeeCCCC
Q 014433          335 SCCLGR-----RLMVWDLSRI  350 (424)
Q Consensus       335 s~~~dg-----~i~iwd~~~~  350 (424)
                      .|+.++     .+.+||+.+.
T Consensus       257 ~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          257 VGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             ECCBCSSSBCCCEEEEETTTT
T ss_pred             ECCcCCCcccccEEEEcCCCC
Confidence            776553     3778887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.38  E-value=1.7  Score=40.38  Aligned_cols=112  Identities=7%  Similarity=0.108  Sum_probs=57.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------CCCceeEEEecCC---CCceEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------HSTEGYGLSWSKF---KEGHLL  195 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~---~~~~l~  195 (424)
                      -.....|+|.|++. ++++-...+.|++++...        +....+..+..      .......|+|+|+   +. .|+
T Consensus        26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~--------g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g-~lY   95 (454)
T 1cru_A           26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPES--------GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP-YIY   95 (454)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTTT--------CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC-EEE
T ss_pred             CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCC--------CcEeEEecCCccccccCCCCceeEEEECCCcCcCC-EEE
Confidence            44667999999996 566533334788887543        11111111111      2345679999995   44 344


Q ss_pred             EEeC-------------CCcEEEEeCCCCCC-CCcccc-eeeee-cCCccEeeEEEecCCCcEEEEEe
Q 014433          196 SGSD-------------DAQICLWDINAAPK-NKSLEA-MQIFK-VHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       196 s~~~-------------dg~i~iwd~~~~~~-~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      .+..             ...|.-+++..... ....+. +..+. ........|+|.|++. |+++.+
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence            3332             13455555533211 001111 11111 1123478899999996 554544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.21  E-value=0.42  Score=41.75  Aligned_cols=187  Identities=7%  Similarity=0.052  Sum_probs=87.3

Q ss_pred             cEEEEEeCC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC------CcEEEEeC
Q 014433          139 FLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD------AQICLWDI  208 (424)
Q Consensus       139 ~~latg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~  208 (424)
                      .+++.|+.+    ..+.+||..+        ..+.....+.........+.+  ++. +++.|+.+      ..+.+||+
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~--------~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~  125 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVK--------DSWYSKLGPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDT  125 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTT--------TEEEEEECCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEET
T ss_pred             EEEEEeCCCCCCcceEEEEeCCC--------CeEEECCCCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeC
Confidence            477777754    6788898876        222221111111111112222  233 66667654      45888888


Q ss_pred             CCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC---------CCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      .+..    ...+..+....... +++.. + ..+++.|+.         -..+.+||+.+..- ..+..+......-.++
T Consensus       126 ~~~~----W~~~~~~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~  197 (306)
T 3ii7_A          126 RTES----WHTKPSMLTQRCSH-GMVEA-N-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-TELCPMIEARKNHGLV  197 (306)
T ss_dssp             TTTE----EEEECCCSSCCBSC-EEEEE-T-TEEEEECCEESCTTTCEECCCEEEEETTTTEE-EEECCCSSCCBSCEEE
T ss_pred             CCCc----eEeCCCCcCCccee-EEEEE-C-CEEEEECCCCCCCCcccccceEEEeCCCCCeE-EECCCccchhhcceEE
Confidence            7642    11111111111111 12222 3 356666653         34588999887541 1111111111112222


Q ss_pred             EecCCCCeEEEEEeCC-----CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCC
Q 014433          280 AFNPFNEWILATGSTD-----KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLS  348 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~  348 (424)
                      .+   +..+++.|+.+     ..+.+||+.+.. ..+..+.........+.+  ++ .+++.|+.+     ..+.+||+.
T Consensus       198 ~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          198 FV---KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             EE---TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETT
T ss_pred             EE---CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCC
Confidence            23   33477777754     368899987621 111111111222233333  33 577777754     457788876


Q ss_pred             CC
Q 014433          349 RI  350 (424)
Q Consensus       349 ~~  350 (424)
                      ..
T Consensus       272 ~~  273 (306)
T 3ii7_A          272 TD  273 (306)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=94.78  E-value=3.6  Score=41.35  Aligned_cols=159  Identities=11%  Similarity=0.074  Sum_probs=78.8

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec----CCCceeEEEecCCCCceEEEEeCC
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG----HSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.|.+|+++|.++..+.+++..+.|...+-..        ..+.++.....    ....+.+|++.|..+..++.+...
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--------~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~   85 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--------SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGR   85 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--------TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECS
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--------CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCc
Confidence            468999999998766777777777766555322        11221110000    124689999998655455555432


Q ss_pred             Cc----EEEEeCCCCCCCCcccceee-ee--c---CCccEeeEEEecCCCcEEEEEeCCCeEEEEEc-CCCCCCCCeeee
Q 014433          201 AQ----ICLWDINAAPKNKSLEAMQI-FK--V---HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL-RTPSVSKPVQSV  269 (424)
Q Consensus       201 g~----i~iwd~~~~~~~~~~~~~~~-~~--~---~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~-~~~~~~~~~~~~  269 (424)
                      ..    -.||.-..+.  .+.+.+.. +.  .   ....+..++++|.....+..+...+.|  |-. ..++..+.+...
T Consensus        86 ~~~~~~~~v~~S~DgG--~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~  161 (789)
T 1sqj_A           86 YVGDEWAAFYVSEDRG--QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSI  161 (789)
T ss_dssp             CTTSSCCEEEEESSTT--SEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTS
T ss_pred             cCCCcccEEEEECCCC--CcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccC
Confidence            11    3344333322  22222211 00  0   011356788888665555555534433  333 233322211111


Q ss_pred             e---ccCCCeeEEEecCCCCeEEEEEeCC
Q 014433          270 V---AHQSEVNCLAFNPFNEWILATGSTD  295 (424)
Q Consensus       270 ~---~~~~~v~~v~~~~~~~~~l~tg~~d  295 (424)
                      .   .....+..|.++|.....++++..+
T Consensus       162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          162 PDAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             CCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             ccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence            0   1124578899988654345555544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.61  E-value=0.78  Score=40.99  Aligned_cols=30  Identities=7%  Similarity=-0.074  Sum_probs=16.7

Q ss_pred             CCCcEEEEEeCCC------cEEEEecCCccCCCCCCC
Q 014433          385 CEDWVISSVAEDN------ILQIWQMAENIYHDEDDL  415 (424)
Q Consensus       385 ~~~~~l~s~~~dg------~i~vw~~~~~~~~~~~~~  415 (424)
                      +++ +++.||.++      .|.+.++.++.+.+....
T Consensus       316 ~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          316 NNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             TTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             CCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            455 777777543      355568887776554443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.53  E-value=2.8  Score=38.41  Aligned_cols=205  Identities=15%  Similarity=0.149  Sum_probs=125.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC----CceeEEEecCCCCceEEEEe
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS----TEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+.+|.-=+|-....  |+--+ +..|+-|++..         ...|...+..|.    ..|..-.-+++.+.++++|-
T Consensus       103 ~~~e~VvfWkWis~~~--l~lVT-~taVyHWsi~~---------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          103 TMTDDVTFWKWISLNT--VALVT-DNAVYHWSMEG---------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             ECSSCCCEEEEEETTE--EEEEC-SSEEEEEESSS---------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred             ecCCCceEEEecCCCe--EEEEc-CCeeEEecccC---------CCCchhheecchhcccceEEEEEECCCCCeEEEEee
Confidence            3455666666765443  44333 46899999975         134555555443    46777777887775455443


Q ss_pred             ------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC--CCcEEEEEeCC---CeEEEEEcCCCC-CCCCe
Q 014433          199 ------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVGDD---QYLLIWDLRTPS-VSKPV  266 (424)
Q Consensus       199 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~d---g~i~i~d~~~~~-~~~~~  266 (424)
                            -.|.+.+|.++..       ..+.+.+|......+.....  ...+|+-+...   +.++|.++..+. ...+.
T Consensus       171 ~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          171 SAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             EEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred             cccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence                  2478899998764       34556777666555544321  12356555443   789999996541 11111


Q ss_pred             e--ee------eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          267 Q--SV------VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       267 ~--~~------~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      .  ..      ....+-..++..++.-. ++..-+.-|.|++||+.+ +.++..-+-....|...+-+..... +++...
T Consensus       244 ~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleT-gt~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr  320 (494)
T 1bpo_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET-GTCIYMNRISGETIFVTAPHEATAG-IIGVNR  320 (494)
T ss_dssp             CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEETTTTE-EEEEET
T ss_pred             cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEeccc-ceeeeeecccCCceEEecccCCCCc-EEEEcc
Confidence            1  10      11234456777777666 677778899999999999 6777776666777777666655444 444457


Q ss_pred             CCeEEEeeCCC
Q 014433          339 GRRLMVWDLSR  349 (424)
Q Consensus       339 dg~i~iwd~~~  349 (424)
                      .|.|.--.++.
T Consensus       321 ~GqVl~v~v~e  331 (494)
T 1bpo_A          321 KGQVLSVCVEE  331 (494)
T ss_dssp             TCEEEEEEECT
T ss_pred             CceEEEEEEcc
Confidence            77666555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.40  E-value=0.52  Score=41.20  Aligned_cols=103  Identities=13%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             CcEEEEEeCC-----CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC-C
Q 014433          240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS-T  308 (424)
Q Consensus       240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~~~-~  308 (424)
                      ..+++.|+.+     ..+.+||+.+..- ..+..+........++.+   +..+++.|+.+     ..+.+||+.+.. .
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            4577777654     4588999876541 111111111112223333   33478888764     468999987621 1


Q ss_pred             cceEecCCCCCEEEEEEcCCCCcEEEEEECC-----CeEEEeeCCC
Q 014433          309 ALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSR  349 (424)
Q Consensus       309 ~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~  349 (424)
                      .+..+.........+.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       245 ~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          245 FVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCC
Confidence            11111111111122222  33 466676643     3466777655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.20  E-value=2.5  Score=36.88  Aligned_cols=62  Identities=8%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             CcEEEEEeC------CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCC
Q 014433          240 EYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRK  305 (424)
Q Consensus       240 ~~~~~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~  305 (424)
                      ..+++.|+.      -..+.+||+.+..- ..+..+......-.++.+  ++ .+++.|+.++     .+.+||+.+
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTT
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCC
Confidence            357777775      24688999887541 111111111111222333  23 4788887654     588899876

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.36  E-value=4.4  Score=36.64  Aligned_cols=158  Identities=8%  Similarity=-0.037  Sum_probs=71.6

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee-eec---------CCccEeeEEEecCCCcEEEEEeC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FKV---------HEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---------~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ..+.+|.+.|..+..|+.+..++.|...  ..+..  ++..+.. ...         ....+.+|.++|.+...+.++..
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~  252 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH  252 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC
Confidence            3578899988544446656544444333  22211  1111110 000         01358899999875444445554


Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccC---CCeeEEEecCCCCeEEEEEeC-----------CCcEEEEECCCCCCcceEec
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQ---SEVNCLAFNPFNEWILATGST-----------DKTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~---~~v~~v~~~~~~~~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~  314 (424)
                      .+ |...+-. +.....+.. ....   ..+.+++++|.....|.++..           ++...+|.....+.....+.
T Consensus       253 ~g-l~~s~D~-G~tW~~~~~-~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~  329 (394)
T 3b7f_A          253 CG-IYRMDRR-EGVWKRIGD-AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD  329 (394)
T ss_dssp             TE-EEEEETT-TTEEECGGG-GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred             Ce-EEEeCCC-CCcceECCC-CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence            44 4443322 221111111 0011   345678888743323444432           33355665554334333332


Q ss_pred             C--CC-C-----CEEEEEEcCCCCcEEEEEECCCeEE
Q 014433          315 S--HK-E-----EVFQVGWNPKNETILASCCLGRRLM  343 (424)
Q Consensus       315 ~--h~-~-----~v~~~~~sp~~~~~l~s~~~dg~i~  343 (424)
                      .  .. .     ....++++|..+..|+.++.++.|.
T Consensus       330 ~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~  366 (394)
T 3b7f_A          330 RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW  366 (394)
T ss_dssp             BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred             CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence            1  11 0     1135888886433355565555444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.13  E-value=4.1  Score=35.53  Aligned_cols=62  Identities=16%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             CcEEEEEeC------CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-----CcEEEEECCC
Q 014433          240 EYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-----KTVKLFDLRK  305 (424)
Q Consensus       240 ~~~~~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-----g~i~iwd~~~  305 (424)
                      ..+++.|+.      -..+.+||+.+..- ..+..+........++.+  ++ .+++.|+.+     ..+.+||+.+
T Consensus       159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             TEEEEECCEESSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred             CEEEEEcCCCCCCCccceEEEEcCCCCEE-EECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence            356667663      24588999987541 111111111111222333  23 477777754     3577889876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.90  E-value=4.8  Score=35.78  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=82.6

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeecCCccEeeEEEecC---CCcEEEEEe--
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLR---HEYLFGSVG--  247 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~~s~~--  247 (424)
                      +...-...+.|+|.|++. ++++--..|.|++++...+.. ..+..+ ..+.........|+++|+   +..++++-+  
T Consensus        27 va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred             eecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence            333445678999999886 555544489999998654321 111000 111223567899999995   455655432  


Q ss_pred             CCCeEEEEEcCCCC----CC-CC--ee-eee-ccCCCeeEEEecCCCCeEEEEEeC-------------CCcEEEEECCC
Q 014433          248 DDQYLLIWDLRTPS----VS-KP--VQ-SVV-AHQSEVNCLAFNPFNEWILATGST-------------DKTVKLFDLRK  305 (424)
Q Consensus       248 ~dg~i~i~d~~~~~----~~-~~--~~-~~~-~~~~~v~~v~~~~~~~~~l~tg~~-------------dg~i~iwd~~~  305 (424)
                      .++.|.-|.+....    .. ..  +. .+. ........|+|.|+|. |+++.+.             .|.|.-++...
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            34556666665421    11 11  11 111 1122456799999997 5555332             24554445432


Q ss_pred             C---CCc---ceEe-cCCCCCEEEEEEcCCCCcEEEE
Q 014433          306 I---STA---LHTF-DSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       306 ~---~~~---~~~~-~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      .   ..+   ...+ .+|. ....++|+|++. ++++
T Consensus       184 ~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~  218 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR-LFAS  218 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC-EEEE
T ss_pred             CccCCCCCCCCeEEeeCCC-CcceEEECCCCC-EEEE
Confidence            1   000   1112 2333 356899999875 4433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.70  E-value=3.6  Score=33.84  Aligned_cols=114  Identities=9%  Similarity=-0.004  Sum_probs=60.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceeEEEecCCCCceEEEEeCCCcE
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ..+..++|+|++. +.|+  .+|.++-.+..+....     .+....+..+..  ..-.++.|.|++.  |..+ .||.|
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~-----~W~~s~t~IG~~Gw~~F~a~~fD~~G~--LYav-~dG~i  109 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDND-----NWMGRAKKIGNGGWNQFQFLFFDPNGY--LYAV-SKDKL  109 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTC-----CHHHHCEEEECSCGGGCSEEEECTTSC--EEEE-ETTEE
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcc-----cccccccEecccccccceEEEECCCCC--EEEe-CCCEE
Confidence            3677999999776 6666  6777555554321000     000011111110  0136788888776  4444 56988


Q ss_pred             EEEeCCCCCCCCcccceeee-ecCCccEeeEEEecCCCcEEEEEeCCCeEE
Q 014433          204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLL  253 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  253 (424)
                      .-++.-+.....-+..-..+ ..-=..+..|.+.|++. |.++.  |+.++
T Consensus       110 yr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly  157 (236)
T 1tl2_A          110 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY  157 (236)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred             EEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence            87775333222221111111 11125679999999985 66444  78754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.49  E-value=5.8  Score=35.70  Aligned_cols=157  Identities=7%  Similarity=0.076  Sum_probs=82.6

Q ss_pred             CccEeeEEEe---cC----CCcEEEEEeCCCeEEEEEcCCCCCCCCee---------ee--ec----cCCCeeEEEecCC
Q 014433          227 EGVVEDVAWH---LR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQ---------SV--VA----HQSEVNCLAFNPF  284 (424)
Q Consensus       227 ~~~v~~~~~~---~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~---------~~--~~----~~~~v~~v~~~~~  284 (424)
                      .+.+.++++.   |.    +...+++=...+.|.|+|+.+++..+...         .+  .+    -...+..|+.+|+
T Consensus       151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~  230 (381)
T 3q6k_A          151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR  230 (381)
T ss_dssp             GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred             CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence            4567888887   22    34455555567889999999865421110         00  01    1246888999987


Q ss_pred             ----CCeEEEEEeCCCcEEEEE---CCCC--CCcceEecCC--CCCEEEEEEc-CCCCcEEEEEECCCeEEEeeCCC-CC
Q 014433          285 ----NEWILATGSTDKTVKLFD---LRKI--STALHTFDSH--KEEVFQVGWN-PKNETILASCCLGRRLMVWDLSR-ID  351 (424)
Q Consensus       285 ----~~~~l~tg~~dg~i~iwd---~~~~--~~~~~~~~~h--~~~v~~~~~s-p~~~~~l~s~~~dg~i~iwd~~~-~~  351 (424)
                          ++.+....-....+.--.   +++.  ...++.+...  ...-..++.. .+| .++++--....|..|+... .-
T Consensus       231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~  309 (381)
T 3q6k_A          231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNTQKMPL  309 (381)
T ss_dssp             CTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEETTSCSB
T ss_pred             cCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeCCCCcc
Confidence                665544444333333332   2221  1122222211  1334456775 455 5677777788899999865 11


Q ss_pred             cccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014433          352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                      ...        ....+. ....-..+.++.+.+++. +.+.++
T Consensus       310 ~~~--------n~~~l~-~d~~l~~pd~~~i~~~g~-Lwv~sn  342 (381)
T 3q6k_A          310 RMK--------NTDVVY-TSSRFVFGTDISVDSKGG-LWFMSN  342 (381)
T ss_dssp             CGG--------GEEEEE-ECTTCCSEEEEEECTTSC-EEEEEC
T ss_pred             ccC--------ceEEEE-ECCCccccCeEEECCCCe-EEEEEC
Confidence            000        002222 222333567777777776 555544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.33  E-value=9.8  Score=37.91  Aligned_cols=194  Identities=12%  Similarity=0.080  Sum_probs=102.8

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--c-----CCCceeEEEecCCCCceEEEEeC
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--G-----HSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~-----h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      .|.++.-..++...+  |+ ++-+..|+..+        ..   ...+.  .     ....|.++.-.+++  .|-.|+.
T Consensus       374 ~v~~i~~d~~g~lWi--gt-~~GL~~~~~~~--------~~---~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~  437 (758)
T 3ott_A          374 RIRHIYEDKEQQLWI--AT-DGSINRYDYAT--------RQ---FIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTC  437 (758)
T ss_dssp             CEEEEEECTTSCEEE--EE-TTEEEEEETTT--------TE---EEEEEEECCC--CBSSSEEEEEECTTS--EEEEEES
T ss_pred             ceEEEEECCCCCEEE--Ee-CCcHhhcCcCC--------Cc---EEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEEC
Confidence            477777777665333  44 35688888765        11   11111  1     12347777765544  4666776


Q ss_pred             CCcEEEEeCCCCC--CCCcccceeeee---c-CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec--
Q 014433          200 DAQICLWDINAAP--KNKSLEAMQIFK---V-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--  271 (424)
Q Consensus       200 dg~i~iwd~~~~~--~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--  271 (424)
                      .+-|.++|..+..  ....+.....+.   + ....|.++...+++. +.+.++..+-|..+|.++..    +..+..  
T Consensus       438 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~----~~~~~~~~  512 (758)
T 3ott_A          438 LGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTRE----VTKLFADE  512 (758)
T ss_dssp             SSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTE----EEEECTTT
T ss_pred             CCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCc----eEEecCCC
Confidence            6668888754210  000010000111   1 123588888888775 54333444558888987643    222211  


Q ss_pred             --cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--c-CCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          272 --HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--D-SHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       272 --~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~-~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                        ....+.++....+|.  |..|+..| +..||..+. . ...+  . .....|.++... ++ . |-.++..| |..+|
T Consensus       513 ~~~~~~~~~i~~d~~g~--lWigt~~G-l~~~~~~~~-~-~~~~~~~gl~~~~i~~i~~~-~g-~-lWi~t~~G-l~~~~  583 (758)
T 3ott_A          513 LTGEKSPNYLLCDEDGL--LWVGFHGG-VMRINPKDE-S-QQSISFGSFSNNEILSMTCV-KN-S-IWVSTTNG-LWIID  583 (758)
T ss_dssp             SCGGGCEEEEEECTTSC--EEEEETTE-EEEECC--C-C-CCBCCCCC---CCEEEEEEE-TT-E-EEEEESSC-EEEEE
T ss_pred             cCCCcccceEEECCCCC--EEEEecCc-eEEEecCCC-c-eEEecccCCCccceEEEEEC-CC-C-EEEECCCC-eEEEc
Confidence              124578888888776  44455554 888887652 2 2222  1 123567888764 55 3 44555666 77788


Q ss_pred             CCCC
Q 014433          347 LSRI  350 (424)
Q Consensus       347 ~~~~  350 (424)
                      ....
T Consensus       584 ~~~~  587 (758)
T 3ott_A          584 RKTM  587 (758)
T ss_dssp             TTTC
T ss_pred             CCCc
Confidence            7653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.00  E-value=6.8  Score=35.38  Aligned_cols=148  Identities=12%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             ceeEEEecCCC-CceEEEEeCCCcEEEEeCCCCCCCCcccceeeee----------------cCCccEeeEEEecCC-Cc
Q 014433          180 EGYGLSWSKFK-EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK----------------VHEGVVEDVAWHLRH-EY  241 (424)
Q Consensus       180 ~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~-~~  241 (424)
                      .|.+|++.|.. .+.|..+...+.|...  ..+.  .+++.+....                .....+.+|.++|.. ..
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG--~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~  191 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHG--ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH  191 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTT--SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCC--CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE
Confidence            57788988743 4456666665655443  2221  1121111110                122467889998853 34


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeee-eec-c--------CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQS-VVA-H--------QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH  311 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~-~~~-~--------~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  311 (424)
                      ++ .+..++.|...+ ..++....+.. ... +        ...+.+|+++|.+...|..+...+ |...+-.  +....
T Consensus       192 l~-vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~--G~tW~  266 (394)
T 3b7f_A          192 LY-IGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR--EGVWK  266 (394)
T ss_dssp             EE-EEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT--TTEEE
T ss_pred             EE-EEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC--CCcce
Confidence            55 444344443332 12221111100 000 0        124889999987433566666544 4443321  22222


Q ss_pred             Eec--CCC---CCEEEEEEcCCCCcEEEEE
Q 014433          312 TFD--SHK---EEVFQVGWNPKNETILASC  336 (424)
Q Consensus       312 ~~~--~h~---~~v~~~~~sp~~~~~l~s~  336 (424)
                      .+.  ...   ..+..++++|..+..|.++
T Consensus       267 ~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          267 RIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             CGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             ECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            211  111   3467788887443334444

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.41  E-value=3.1  Score=41.11  Aligned_cols=108  Identities=11%  Similarity=0.073  Sum_probs=56.0

Q ss_pred             CcEEEEEeCCC--eEEEEEcCCCCCCCCeee---eeccCCCeeEEEecCCCCeEEEEEeC--C-----CcEEEEECCCCC
Q 014433          240 EYLFGSVGDDQ--YLLIWDLRTPSVSKPVQS---VVAHQSEVNCLAFNPFNEWILATGST--D-----KTVKLFDLRKIS  307 (424)
Q Consensus       240 ~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~---~~~~~~~v~~v~~~~~~~~~l~tg~~--d-----g~i~iwd~~~~~  307 (424)
                      ..+++.|+.++  .+.+||+.+..- ..+..   .........++.+......+++.|+.  +     ..+.+||+.+..
T Consensus       501 ~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          501 GNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            35777777654  689999987541 11111   11122223345556553457888875  2     358899988733


Q ss_pred             C--c--ceEec----CCCCCEEEEEEcCCCCcEEEEEECC--------CeEEEeeCCCC
Q 014433          308 T--A--LHTFD----SHKEEVFQVGWNPKNETILASCCLG--------RRLMVWDLSRI  350 (424)
Q Consensus       308 ~--~--~~~~~----~h~~~v~~~~~sp~~~~~l~s~~~d--------g~i~iwd~~~~  350 (424)
                      -  .  ...+.    ........+.+ .++ .+++.|+.+        ..+.+||+.+.
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIKYI-TPR-KLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEEEE-ETT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             cccceEEEEcCCCCCCCcccceEEEe-CCC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            0  0  11111    11112222333 224 467777642        45888888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.86  E-value=14  Score=36.79  Aligned_cols=232  Identities=11%  Similarity=0.040  Sum_probs=125.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...|++|.-..+|.  |-.|+.+| +..||-.....       .....  ......|.++.-..++  .|..|+.+| +.
T Consensus        21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~-------~~~~~--~~~~~~i~~i~~d~~g--~lWigT~~G-l~   85 (758)
T 3ott_A           21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQ-------HFTYG--ENNNTRIYCGVIIDNT--YLYMGTDNG-IL   85 (758)
T ss_dssp             CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEE-------CSCTT--STTSSCEEEEEEETTT--EEEEEETTE-EE
T ss_pred             cceEEEEEECCCCC--EEEEECCC-ccccCCCceEE-------EEccC--CCCCceEEEEEEcCCC--cEEEEeCCC-eE
Confidence            45788888877775  44455666 55566432000       00000  0123457777766544  466777665 77


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-----ccCCCeeEE
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-----AHQSEVNCL  279 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~v  279 (424)
                      .||..+.....      ........|.++.. .++ .+. .++.+ -|..+|..+..    +..+.     .....|.++
T Consensus        86 ~yd~~~~~f~~------~~~~~~~~i~~i~~-~~g-~lW-igt~~-Gl~~~~~~~~~----~~~~~~~~~~l~~~~i~~i  151 (758)
T 3ott_A           86 VYNYRADRYEQ------PETDFPTDVRTMAL-QGD-TLW-LGALN-GLYTYQLQSRK----LTSFDTRRNGLPNNTIYSI  151 (758)
T ss_dssp             EEETTTTEECC------CSCCCCSCEEEEEE-ETT-EEE-EEETT-EEEEEETTTCC----EEEECHHHHCCSCSCEEEE
T ss_pred             EEeCCCCEEEC------cccCCCceEEEEEe-cCC-cEE-EEcCC-cceeEeCCCCe----EEEeccCCCCcCCCeEEEE
Confidence            89986542211      00111235666654 344 454 45555 68888887643    22221     123468888


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC------CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      ....++.  |..|+.. -+..+|..+ .. ...+..      ....|.++...+++.. |..|+.. -+..++...... 
T Consensus       152 ~~d~~g~--lWigt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~~-Gl~~~~~~~~~~-  223 (758)
T 3ott_A          152 IRTKDNQ--IYVGTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTEG-YLFQYFPSTGQI-  223 (758)
T ss_dssp             EECTTCC--EEEEETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEEE-EEEEEETTTTEE-
T ss_pred             EEcCCCC--EEEEeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCE-EEEEECC-CCeEEcCCCCeE-
Confidence            8888776  3345554 477788765 22 222211      1234888888876643 3334433 477888765321 


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                                 .....+  ....|.++....++. +.+. ..+ -+.+++..++.+
T Consensus       224 -----------~~~~~l--~~~~i~~i~~d~~g~-lWig-T~~-Gl~~~~~~~~~~  263 (758)
T 3ott_A          224 -----------KQTEAF--HNNSIKSLALDGNGD-LLAG-TDN-GLYVYHNDTTPL  263 (758)
T ss_dssp             -----------EEEEEE--EEEEEEEEEECTTCC-EEEE-ETT-EEEEECCTTSCC
T ss_pred             -----------EeccCC--CCCeEEEEEEcCCCC-EEEE-eCC-ceeEEecCCCcE
Confidence                       111111  123478888888888 4443 344 488888876544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.78  E-value=7.7  Score=33.70  Aligned_cols=103  Identities=7%  Similarity=0.064  Sum_probs=56.1

Q ss_pred             EEecCCCcEEEEE---eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc
Q 014433          234 AWHLRHEYLFGSV---GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL  310 (424)
Q Consensus       234 ~~~~~~~~~~~s~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  310 (424)
                      .|++++..++.+-   .....|...++....    ...+..+..    .+++++++.+..+......|...++.. +...
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~----~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g-~~~~  180 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE----KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS-QSEA  180 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCC----CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT-TEEE
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCC----eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC-CCEE
Confidence            5677787776554   234456666665433    233333322    456778887666655467888888775 3222


Q ss_pred             eEecCCCCCEEEEEEcCCCCcEEEEEECCC-eEEEeeCCC
Q 014433          311 HTFDSHKEEVFQVGWNPKNETILASCCLGR-RLMVWDLSR  349 (424)
Q Consensus       311 ~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~  349 (424)
                      ..+.   +... ..++|+++.++.+...++ .|..-++..
T Consensus       181 ~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          181 LFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             EEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            2222   2222 345688876554443332 454445543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.41  E-value=11  Score=37.13  Aligned_cols=111  Identities=13%  Similarity=0.089  Sum_probs=55.9

Q ss_pred             CCCcEEEEEeCC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC--cEEEEe
Q 014433          136 QNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QICLWD  207 (424)
Q Consensus       136 ~~~~~latg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd  207 (424)
                      ++ .+++.|+.+      ..+.+||..+        ..+.....+.... .-.+++...++. +++.|+.++  .+.+||
T Consensus       451 ~~-~lyv~GG~~~~~~~~~dv~~yd~~t--------~~W~~~~~~p~~R-~~h~~~~~~~~~-iyv~GG~~~~~~v~~yd  519 (695)
T 2zwa_A          451 NN-QLLLIGGRKAPHQGLSDNWIFDMKT--------REWSMIKSLSHTR-FRHSACSLPDGN-VLILGGVTEGPAMLLYN  519 (695)
T ss_dssp             TT-EEEEECCBSSTTCBCCCCEEEETTT--------TEEEECCCCSBCC-BSCEEEECTTSC-EEEECCBCSSCSEEEEE
T ss_pred             CC-EEEEEcCCCCCCCccccEEEEeCCC--------CcEEECCCCCCCc-ccceEEEEcCCE-EEEECCCCCCCCEEEEE
Confidence            45 477777643      3577888776        2222221111111 111222222344 677777654  688999


Q ss_pred             CCCCCCCCcccceee---eecCCccEeeEEEecCCCcEEEEEeC--C-----CeEEEEEcCCCC
Q 014433          208 INAAPKNKSLEAMQI---FKVHEGVVEDVAWHLRHEYLFGSVGD--D-----QYLLIWDLRTPS  261 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~s~~~--d-----g~i~i~d~~~~~  261 (424)
                      +.+..    +..+..   ..........+.+......+++.|+.  +     ..+.+||+.+..
T Consensus       520 ~~t~~----W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          520 VTEEI----FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTTE----EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCc----eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            87642    111111   11111122335555553557777765  2     458899998865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.63  E-value=5.8  Score=36.91  Aligned_cols=114  Identities=11%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee-eee-----cCCccEeeEEEecC---CCcEEEEEeCC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-IFK-----VHEGVVEDVAWHLR---HEYLFGSVGDD  249 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~-----~~~~~v~~~~~~~~---~~~~~~s~~~d  249 (424)
                      ...+.|+|.|++...|+++...|.|++++.........+..+. .+.     ........|+++|+   +..++++-+.+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467999999986447777889999999754321111111111 011     11456789999996   34455554321


Q ss_pred             ------------CeEEEEEcCCC--CC-----CCCeeeee--ccCCCeeEEEecCCCCeEEEEEe
Q 014433          250 ------------QYLLIWDLRTP--SV-----SKPVQSVV--AHQSEVNCLAFNPFNEWILATGS  293 (424)
Q Consensus       250 ------------g~i~i~d~~~~--~~-----~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~  293 (424)
                                  ..|.-|.+...  ..     .+.+..+.  ........|+|.|+|. |+++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G  157 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG  157 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence                        13444655432  10     11122221  1223468899999997 444444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.26  E-value=3.3  Score=36.82  Aligned_cols=19  Identities=11%  Similarity=0.046  Sum_probs=13.0

Q ss_pred             cEEEEEeC----------CCeEEEEeCCC
Q 014433          139 FLIATKTV----------SAEVYVFDYSK  157 (424)
Q Consensus       139 ~~latg~~----------dg~v~iw~~~~  157 (424)
                      .+++.|+.          ...+.+||..+
T Consensus        67 ~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             EEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             EEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            46666665          24688898876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.14  E-value=2.4  Score=40.12  Aligned_cols=96  Identities=8%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCC-CCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-----------c-ceEecCCCC
Q 014433          252 LLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-----------A-LHTFDSHKE  318 (424)
Q Consensus       252 i~i~d~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-----------~-~~~~~~h~~  318 (424)
                      +.|.|.+.... ...+..+-.-......+..+|+|++++++|-.+.++.++|+++...           . +.... -.-
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCC
Confidence            56666654211 0112222223445667889999999888888899999999984211           1 11222 245


Q ss_pred             CEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          319 EVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      .....+|.++| ....+.--|..|.-|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            67889999998 5566666899999999965

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.70  E-value=2.1  Score=37.91  Aligned_cols=113  Identities=11%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEE--ecCCCcEEEEE-eCCCeEEEEEcCCCCCCCCeeee
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--HLRHEYLFGSV-GDDQYLLIWDLRTPSVSKPVQSV  269 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~s~-~~dg~i~i~d~~~~~~~~~~~~~  269 (424)
                      +++.++.||.|.-+|..+++....+...     ...++....-  .+.+..+++.. +.||.|..++..++...   ..+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~---~~~   83 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK---LPL   83 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE---EEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE---eee
Confidence            6889999999999998887543332211     0011111100  01122344333 58999999998776421   111


Q ss_pred             ec----cCCCeeE---EEe-cC----CCCeEEEEEeCCCcEEEEECCCCCCcceEecC
Q 014433          270 VA----HQSEVNC---LAF-NP----FNEWILATGSTDKTVKLFDLRKISTALHTFDS  315 (424)
Q Consensus       270 ~~----~~~~v~~---v~~-~~----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  315 (424)
                      ..    ..+++..   ... .+    .+. .+++|+.+|.+...|+++ ++.+..+..
T Consensus        84 ~~~~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~t-G~~~W~~~~  139 (339)
T 2be1_A           84 SIRQLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLN-GEIISAFGP  139 (339)
T ss_dssp             EHHHHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTT-CCEEEEEST
T ss_pred             ccccceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCC-CcEEEEEec
Confidence            10    1122221   000 00    233 588999999999999998 777777664

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=83.93  E-value=20  Score=30.96  Aligned_cols=141  Identities=9%  Similarity=0.012  Sum_probs=72.2

Q ss_pred             EEecCCCCceEEEEe--CCC--cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          184 LSWSKFKEGHLLSGS--DDA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       184 l~~~~~~~~~l~s~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      ..|++++. .|+-..  .++  .|..-++....       ...+..+..    .+++++++.++.+......|.+.++..
T Consensus       109 ~~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~-------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          109 IYASLIGN-YIYYLHYDTQTATSLYRIRIDGEE-------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             EEEEEETT-EEEEEEESSSSCEEEEEEETTSCC-------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             cEEEEeCC-EEEEEeecCCCCceEEEEECCCCC-------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence            36677777 455444  334  45555554321       112222222    456777887775654467888888766


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE-
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-  337 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~-  337 (424)
                      ...    ..+.  ..... ..+.|++.+++.+-..++ .|..-++..  .....+..  ..+  ..|+|.+..++.+.. 
T Consensus       177 ~~~----~~l~--~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~  243 (302)
T 3s25_A          177 QSE----ALFY--DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLTE--ANI--EHYNVYGSLIFYQRGG  243 (302)
T ss_dssp             TEE----EEEE--CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECSC--SCE--EEEEEETTEEEEEECS
T ss_pred             CCE----EEEe--CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEeC--CCc--ceEEECCCEEEEEECC
Confidence            442    2221  12222 345688887666554433 555555554  33333432  233  347788875544322 


Q ss_pred             CCCeEEEeeCCC
Q 014433          338 LGRRLMVWDLSR  349 (424)
Q Consensus       338 ~dg~i~iwd~~~  349 (424)
                      ..+.|..-++.-
T Consensus       244 ~~~~i~~~~~DG  255 (302)
T 3s25_A          244 DNPALCVVKNDG  255 (302)
T ss_dssp             SSCEEEEEETTS
T ss_pred             CCcEEEEEECCC
Confidence            234555555543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=81.59  E-value=46  Score=33.33  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=78.1

Q ss_pred             CCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec----CCccEeeEEEecCCCcEEEEEeCCCe--
Q 014433          178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDDQY--  251 (424)
Q Consensus       178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~dg~--  251 (424)
                      ...|.+|+++|..+..++++...+.|...+  .+.  .+.+.+.....    ....+.+|+++|.+...+.++.....  
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG--~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~   89 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD   89 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCC--CCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence            457999999998777788888777665443  221  22222111000    12469999999865444434432211  


Q ss_pred             --EEEEEc-CCCCCCCCeeee-e-----ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC------C
Q 014433          252 --LLIWDL-RTPSVSKPVQSV-V-----AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS------H  316 (424)
Q Consensus       252 --i~i~d~-~~~~~~~~~~~~-~-----~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------h  316 (424)
                        -.||-. ..++....+... .     .....+..++++|.....+..+...+.  ||-....++--..+..      .
T Consensus        90 ~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~  167 (789)
T 1sqj_A           90 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTN  167 (789)
T ss_dssp             SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCST
T ss_pred             cccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCC
Confidence              233333 333321111110 0     001135678888865555666664433  3333332332222221      1


Q ss_pred             CCCEEEEEEcCCCCcEEEEEECC
Q 014433          317 KEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       317 ~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      ...+..+.++|.....++++..+
T Consensus       168 ~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          168 GIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TTCEEEEEECTTSTTCEEEEESS
T ss_pred             CCCeEEEEECCCCCCEEEEEEcC
Confidence            24688899998654345555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (188), Expect = 3e-16
 Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 20/186 (10%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA-------------M 220
             GH      +  ++     + S S+D  + +W +        L                
Sbjct: 139 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197

Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
               + E    +     +      S   D+ + +WD+ T      + ++V H + V  + 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVL 254

Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340
           F+   ++I  + + DKT++++D +     + T ++H+  V  + ++      + +  + +
Sbjct: 255 FHSGGKFI-LSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQ 311

Query: 341 RLMVWD 346
            + VW+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 20/195 (10%)

Query: 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176
             ++      E  R     Q+  LIA+ +    V V+  +    K  L         +  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 177 H---------STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE 227
                        G     S      LLSGS D  I +WD++      +   +     H+
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------TGMCLMTLVGHD 247

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287
             V  V +H   +++  S  DD+ L +WD +     + ++++ AH+  V  L F+    +
Sbjct: 248 NWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 288 ILATGSTDKTVKLFD 302
            + TGS D+TVK+++
Sbjct: 304 -VVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 46/230 (20%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
           H++S S D  I +W++       +   ++ F  H   V  V  +     +  S  +DQ +
Sbjct: 115 HIVSASRDKTIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLIA-SCSNDQTV 167

Query: 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW-------------------ILATGS 293
            +W + T    +    +  H+  V C+++ P + +                    L +GS
Sbjct: 168 RVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            DKT+K++D+      L T   H   V  V ++      + SC   + L VWD       
Sbjct: 225 RDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN---- 278

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403
                        +     H   ++   ++    +V++  + D  +++W+
Sbjct: 279 ----------KRCMKTLNAHEHFVTSLDFHKTAPYVVTG-SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 40/239 (16%), Positives = 90/239 (37%), Gaps = 19/239 (7%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L GH +    + +       ++S S+DA I +WD        + +  +  K H   V+D+
Sbjct: 13  LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYE------TGDFERTLKGHTDSVQDI 65

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
           ++    + L           +               +              N   + + S
Sbjct: 66  SFDHSGKLLA-----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            DKT+K+++++     + TF  H+E V  V  N  + T++ASC   + + VW ++  + +
Sbjct: 121 RDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECK 178

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-----VISSVAEDNILQIWQMAEN 407
               +       + +      S IS+ + +  +        + S + D  +++W ++  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
           W  R P       ++  H+S V  + F+P     + + S D T+K++D         T  
Sbjct: 3   WIPRPP----EKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYET-GDFERTLK 56

Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVW 345
            H + V  + ++   + + +        +  
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWD 87

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 1/104 (0%)

Query: 311 HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH 370
           +    H+  V +V ++P   +++ S      + VWD    D E+T +   D   ++ F H
Sbjct: 11  YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414
            G                         +        ++    + 
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (189), Expect = 3e-16
 Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 19/198 (9%)

Query: 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST 179
             ++ +  V      P +   IA  ++   V V+D         LD   S +    GH  
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---SENESGTGHKD 255

Query: 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK------SLEAMQIFKVHEGVVEDV 233
             Y + +++     ++SGS D  + LW++  A          S      +  H+  V  V
Sbjct: 256 SVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW-----I 288
           A     EY+  S   D+ +L WD ++     P+  +  H++ V  +A    +       +
Sbjct: 315 ATTQNDEYIL-SGSKDRGVLFWDKKS---GNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 289 LATGSTDKTVKLFDLRKI 306
            ATGS D   +++  +KI
Sbjct: 371 FATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 6e-16
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA-MQIFKVHEGVVEDVAWHLRHEYLFG 244
            S     ++ +GS D  + +WD       + L++  +    H+  V  V +    + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV- 270

Query: 245 SVGDDQYLLIWDLRTPSVS---------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295
           S   D+ + +W+L+  +               + + H+  V  +A    +E+I  +GS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSKD 329

Query: 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLSRI 350
           + V  +D +     L     H+  V  V             + A+     +  +W   +I
Sbjct: 330 RGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 11/155 (7%)

Query: 265 PVQSVVAHQSEV--NCLAFNPFNEWILATGSTDKTVKLFDL---RKISTALHTFDSHKEE 319
           P      H   +    L  +  +        T+    L++    R+I   LH    H   
Sbjct: 5   PYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64

Query: 320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED----AEDGPPELLFIHGGHTS 375
           V  V ++  +   LA+ C  +   V+ +S         D     +D              
Sbjct: 65  VCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410
            I    ++P   ++ +   +  I         I  
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 36/245 (14%), Positives = 80/245 (32%), Gaps = 29/245 (11%)

Query: 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN------------AAPKNKSLEA 219
            +   H++    + +S   +G  L+   +    ++ ++            AA K+     
Sbjct: 56  HKSLDHTSVVCCVKFSN--DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279
                  +  +  V +    ++L     D    +        V            +    
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-----GHEQDIYS 168

Query: 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339
                +   L +GS D+TV+++DLR          S ++ V  V  +P +   +A+  L 
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226

Query: 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399
           R + VWD       +  +   +          GH   +    +      V+S  + D  +
Sbjct: 227 RAVRVWDSETGFLVERLDSENE-------SGTGHKDSVYSVVFTRDGQSVVSG-SLDRSV 278

Query: 400 QIWQM 404
           ++W +
Sbjct: 279 KLWNL 283

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 248 DDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306
            + Y ++++   P      +   + H S V C+ F+   E+ LATG  +KT +++ +   
Sbjct: 36  TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDG 93

Query: 307 S-----------------TALHTFDSHKEEVFQVGWNPKNETILASCC 337
           S                     +  S    +  V ++P  + +     
Sbjct: 94  SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294
                  LF S   D    +WD+R        Q+   H+S++N + F P N    ATGS 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFP-NGNAFATGSD 246

Query: 295 DKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
           D T +LFDLR     +     +    +  V ++  +  +L +        VWD  +    
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK---- 301

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
                      +   +  GH +++S          V +  + D+ L+IW
Sbjct: 302 ----------ADRAGVLAGHDNRVSCLGVTDDGMAVATG-SWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 3e-15
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 11/161 (6%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245
                    +SG+ DA   LWD+            Q F  HE  +  + +          
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGNAFA-- 242

Query: 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305
            G D                  S       +  ++F+  +  +L  G  D    ++D  K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK 301

Query: 306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
            +        H   V  +G    +   +A+      L +W+
Sbjct: 302 -ADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
             GH ++   + +         +GSDDA   L+D+ A  +                +  V
Sbjct: 222 FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELM----TYSHDNIICGITSV 276

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
           ++      L  +  DD    +WD            +  H + V+CL     +   +ATGS
Sbjct: 277 SFSKSGRLLL-AGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTD-DGMAVATGS 331

Query: 294 TDKTVKLFD 302
            D  +K+++
Sbjct: 332 WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
           H+ ++N   + P         T S +     +     +  +  +                
Sbjct: 225 HESDINAICFFPNGNAFA---TGSDDATCRLFDLRADQELMTYSHDN------IICGITS 275

Query: 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243
           +S+SK     LL+G DD    +WD          +   +   H+  V  +        + 
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDA------LKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

Query: 244 GSVGDDQYLLIWD 256
            +   D +L IW+
Sbjct: 329 -TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           LRGH  + Y + W       L+S S D ++ +WD        +   +    +    V   
Sbjct: 51  LRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSY------TTNKVHAIPLRSSWVMTC 103

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
           A+     Y+     D+   +          +  + +  H   ++C  F   N+ +  T S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV--TSS 161

Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D T  L+D+        T  +             +  +  S        +WD+      
Sbjct: 162 GDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---- 215

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410
                             GH S I+   + P  +   +  ++D   +++ +  +   
Sbjct: 216 ----------GMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQEL 261

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323
           +  +++  H +++  + +   +   L + S D  + ++D    +  +H        V   
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTC 103

Query: 324 GWNPKNETILASCC 337
            + P    +     
Sbjct: 104 AYAPSGNYVACGGL 117

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 23/246 (9%), Positives = 60/246 (24%), Gaps = 35/246 (14%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG----- 228
            + H  + + +S         +S S D  + +WD          +      VH+      
Sbjct: 10  GKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 229 -VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-------PVQSVVAHQSEVNCLA 280
            V++ +        L  +      LL + +     +K        +      +     L 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 281 FNP----FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET----- 331
           +           L       T  ++     +   ++   +     ++    ++       
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 332 ----------ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381
                     ++A+      + + +LS +      E           I     S      
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 382 WNPCED 387
               + 
Sbjct: 247 AIAHDS 252

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 6e-11
 Identities = 27/216 (12%), Positives = 63/216 (29%), Gaps = 31/216 (14%)

Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV---------VA 271
              K H+  +  V+    + +   S   D YL +WD +      P             + 
Sbjct: 8   NAGKAHDADIFSVSAC--NSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK---------ISTALHTFDSHKEEVFQ 322
           H   +  +  + F   ++AT S    +  + + +             L   D  K   + 
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 323 VGWNPKNET----ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP----PELLFIHGGHT 374
           + W   N+      L +  +     +W      +E         P       +      +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410
              +    +     +I++   +  +QI +++     
Sbjct: 185 QFATSVDISE--RGLIATGFNNGTVQISELSTLRPL 218

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 18/202 (8%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
               S     +  S+   G + +G ++  + + +++      + E+      +   +  V
Sbjct: 180 PMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 234 AWHLRHEYLFGSVGDDQYLLI---WDLR----------TPSVSKPVQSVVAHQSEVNCLA 280
            +      L     D         ++                S+      AH S V  L+
Sbjct: 238 KFS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340
           FN   E +  +   D  ++ +D++     + T + H +++         +    S     
Sbjct: 297 FNDSGETL-CSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 341 RLMVWDLSRIDEEQTPEDAEDG 362
              V  L +        D  + 
Sbjct: 355 VFDVKFLKKGWRSGMGADLNES 376

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 6e-11
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 24/200 (12%)

Query: 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262
           I +WD+        +   ++   H   V  V +  ++     S   D+ + +W+  T   
Sbjct: 117 IAVWDMA---SPTDITLRRVLVGHRAAVNVVDFDDKYIV---SASGDRTIKVWNTSTC-- 168

Query: 263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322
            + V+++  H+  + C     + + ++ +GS+D T++L+D+   +         +     
Sbjct: 169 -EFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEEL 220

Query: 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW 382
           V     +   + S     ++ VWDL    + + P          L     H+ ++    +
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA-----GTLCLRTLVEHSGRVFRLQF 275

Query: 383 NPCEDWVISSVAEDNILQIW 402
           +    + I S + D+ + IW
Sbjct: 276 DE---FQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
            +    G++  ++++  ++SGS D  I LWD         +E     +V EG  E V   
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWD---------IECGACLRVLEGHEELVRCI 224

Query: 237 LRHEYLFGSVGDDQYLLIWDLRT------PSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
                   S   D  + +WDL        P+ +  ++++V H   V  L F+    + + 
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIV 281

Query: 291 TGSTDKTVKLFD 302
           + S D T+ ++D
Sbjct: 282 SSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 26/169 (15%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245
              F + +++S S D  I +W+             +  +   G    +A     + L  S
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWN---------TSTCEFVRTLNGHKRGIACLQYRDRLVVS 193

Query: 246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR- 304
              D  + +WD+           +   +     +    F+   + +G+ D  +K++DL  
Sbjct: 194 GSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247

Query: 305 -------KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
                    +  L T   H   VF++ ++      + S      +++WD
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG 183
            +G     R +  +   I +     ++ V+D           G       L  HS   + 
Sbjct: 214 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-LCLRTLVEHSGRVFR 272

Query: 184 LSWSKFKEGHLLSGSDDAQICLWD 207
           L +    E  ++S S D  I +WD
Sbjct: 273 LQFD---EFQIVSSSHDDTILIWD 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 22/182 (12%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L+GH+   Y     +F   H++SGS D  I +WD+           +     H+ +   +
Sbjct: 173 LQGHTNRVY---SLQFDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGM 223

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
                 + +  S   D  + IWD++T    + +Q    HQS V CL FN      + T S
Sbjct: 224 ELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSS 277

Query: 294 TDKTVKLFDLRK----ISTALHTFDSHKEEVFQVGWNPKNETILASCCLG---RRLMVWD 346
            D TVKL+DL+      +            V+++  +            G    +L+V D
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

Query: 347 LS 348
             
Sbjct: 338 FD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 28/227 (12%)

Query: 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244
              ++    ++SG+ D  + +WD          E        +G    V           
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWD---------PETETCLHTLQGHTNRVYSLQFDGIHVV 191

Query: 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
           S   D  + +WD+ T      + ++  HQS  + +        IL +G+ D TVK++D++
Sbjct: 192 SGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIK 245

Query: 305 KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP 364
                L T     +    V     N+  + +      + +WDL   +  +     E G  
Sbjct: 246 TGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG-- 302

Query: 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENI 408
                  G    +     +  +           E+  L +     ++
Sbjct: 303 -------GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 50/275 (18%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           L+GH    + ++  +F    ++SGSDD  + +W         + + ++    H G V   
Sbjct: 12  LKGHD--DHVITCLQFCGNRIVSGSDDNTLKVWSA------VTGKCLRTLVGHTGGVWSS 63

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC--------------- 278
                      +    +                 S V                       
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 279 ----------------LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322
                           +    ++   + +G+ D  VK++D     T LHT   H   V+ 
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYS 182

Query: 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG-------PPELLFIHGGHTS 375
           + ++  +   + S  L   + VWD+   +   T    +            L+  +   T 
Sbjct: 183 LQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 239

Query: 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410
           KI D     C   +       + +   Q  +N   
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 18/162 (11%), Positives = 38/162 (23%), Gaps = 8/162 (4%)

Query: 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314
           W        K  + +  H   V       F    + +GS D T+K++        L T  
Sbjct: 1   WRRGEL---KSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVT-GKCLRTLV 54

Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA--EDGPPELLFIHGG 372
            H   V+            ++    +         I                E   + G 
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 114

Query: 373 HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414
             + +  +     +   +       +  +      +     D
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 156

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 4e-09
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 3/149 (2%)

Query: 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR--KISTALHTFDSHKEEVF 321
           + VQ   A +  ++ +   P     L   S D ++ ++       +  L     +K  + 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381
              +    +  +    +   ++  DL      Q   + E           G    I+   
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 382 WNPCEDWVISSVAEDNILQIWQMAENIYH 410
               E     +  +  I      + N   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 220 MQIFKV---HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276
           MQI ++    +  + D+        L      D  L ++     + +  +   + ++  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLL-ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 277 NCLAFNPFNEWILATGS 293
            C  F    +  +  G+
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV---------HEGVVEDVAW 235
           +    ++      S D ++ +   +    + +      F+              V  + +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295
             RH++L+ + G D  +  W+L+T    K +++     +E + +     ++ IL   ++D
Sbjct: 260 SPRHKFLY-TAGSDGIISCWNLQT---RKKIKNFAKF-NEDSVVKIAC-SDNILCLATSD 313

Query: 296 KTVKLFDLRKISTALHT 312
            T K       +  L+ 
Sbjct: 314 DTFKTNAAIDQTIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 22/230 (9%), Positives = 63/230 (27%), Gaps = 16/230 (6%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
            +        +      +  LL  S D  + ++  +   KN  L        ++  +   
Sbjct: 7   EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQ---SLRYKHPLLCC 62

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            +    +           +L  DL      + + +  A+        +        +   
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 294 TDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352
             + +   +      A+   +S+  +   ++     N + L       ++  + L   ++
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
           +                  G   +I D +  P E    +  + D  + + 
Sbjct: 183 DNGT-----------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 27/288 (9%), Positives = 76/288 (26%), Gaps = 11/288 (3%)

Query: 116 VQIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL 174
           +QI+Q        ++  + +P    L    +    + V+ +        L       L+ 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLL-LITSWDGSLTVYKFDIQAKNVDL-------LQS 52

Query: 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVA 234
             +       ++    +  +  G+   +I   D+  +P  ++L   +       + +   
Sbjct: 53  LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD 112

Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294
             L      G +         D      +    +             +      +     
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172

Query: 295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354
            +  +L      +  +       +         + E    S   GR  + +   + D+  
Sbjct: 173 -QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231

Query: 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
           + +        L          ++   ++P     + +   D I+  W
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCW 278

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGWNPKNE 330
               ++C A+N      +A    +  V +++        +H    H  +V  V W P + 
Sbjct: 6   LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DS 63

Query: 331 TILASCCLGRRLMVWD 346
             + +C   R   VW 
Sbjct: 64  NRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 18/181 (9%), Positives = 52/181 (28%), Gaps = 3/181 (1%)

Query: 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289
           +   AW+     +     ++  + I++         V  +  H  +V  + + P +   +
Sbjct: 10  ISCHAWNKDRTQIA-ICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAP-DSNRI 66

Query: 290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349
            T  TD+   ++ L+  +              +      NE   A     R + +    +
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126

Query: 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409
            ++    +  +      +     H + +   + +      I S     + +         
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186

Query: 410 H 410
            
Sbjct: 187 K 187

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 20/134 (14%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGS 245
            +   E  L++   D    L+  ++A    S            V +  +           
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG------RLDVPKQSSQ--------RG 294

Query: 246 VGDDQYLLIWDLRTPSVSKPVQSVV---AHQSEVNCLAFNP---FNEWILATGSTDKTVK 299
           +   +     D +  S             H++ V+ ++             T   D  + 
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354

Query: 300 LFDLRKISTALHTF 313
           ++D+R + +AL   
Sbjct: 355 IWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368
           A H+F    E +    WN    T +A C     + +++                    + 
Sbjct: 1   AYHSF--LVEPISCHAWNKDR-TQIAICPNNHEVHIYEK------------SGNKWVQVH 45

Query: 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410
               H  +++   W P  + +++    D    +W +    + 
Sbjct: 46  ELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWK 86

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 22/186 (11%), Positives = 49/186 (26%), Gaps = 14/186 (7%)

Query: 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199
            IA    + EV++++ S                 L+ H+ +  G+ W+      +++   
Sbjct: 21  QIAICPNNHEVHIYEKS--------GNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGT 71

Query: 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259
           D    +W +             +  +             +E  F      + + I     
Sbjct: 72  DRNAYVWTLKGRTWK-----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126

Query: 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE 319
            +     + +               N  +LA GS D   ++F             +    
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186

Query: 320 VFQVGW 325
               G 
Sbjct: 187 KMPFGE 192

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 13/173 (7%), Positives = 42/173 (24%), Gaps = 9/173 (5%)

Query: 186 WSKFKEGHLLSGSDDAQICLWDI-NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244
                  +L   S  +     D        + +    +  +  G         R      
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE--WILATGSTDKTVKLFD 302
              D   +              + ++  +S +   +     E             +  +D
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
           ++            K  +  +  +  +   +       ++  + L + ++E+T
Sbjct: 305 VKT-----RKVTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 17/189 (8%), Positives = 42/189 (22%), Gaps = 13/189 (6%)

Query: 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG 176
           +I      +       +   +  L     +S         +       +    P   +  
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLY---YLSYRSLDPSPDRVVLNFSFEVVSKP-FVIPL 225

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
                                 D   +                +   +    +       
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285

Query: 237 LRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK 296
               Y  G+  +   LL +D++T       + V   ++ +  L  +   +  +     D 
Sbjct: 286 EFAAYYQGA-PEKGVLLKYDVKT-------RKVTEVKNNLTDLRLSADRKT-VMVRKDDG 336

Query: 297 TVKLFDLRK 305
            +  F L K
Sbjct: 337 KIYTFPLEK 345

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279
                +HE  V  + +    ++   S G D  L  W     +            S V   
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFV-STGKDNLLNAWRTPYGASIF----QSKESSSVLSC 312

Query: 280 AFNPFNEWILATGSTDKTVKLFDL 303
             +  +++I  TGS DK   ++++
Sbjct: 313 DISVDDKYI-VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 7e-07
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
           H+S V  L F    +W   +   D  +  +       ++         V     +  ++ 
Sbjct: 264 HESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY-GASIFQSK-ESSSVLSCDISV-DDK 319

Query: 332 ILASCCLGRRLMVWDL 347
            + +    ++  V+++
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 12/114 (10%)

Query: 240 EYLFGSVGDDQYLLI----WDLRTPSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGS 293
            Y F    D Q   +      L  P + +  + +  + H   V  +  +      + TG 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-VYTGG 70

Query: 294 TDKTVKLFDLR----KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343
               VK++D+     K   +     +    +      P   T++         +
Sbjct: 71  -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
           H +    L ++       +S   D  +  W            ++   K     V      
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT------PYGASIFQSK-ESSSVLSCDIS 315

Query: 237 LRHEYLFGSVGDDQYLLIWDL 257
           +  +Y+  +   D+   ++++
Sbjct: 316 VDDKYIV-TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 9e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVVAHQSEVNCLAFNP 283
           H  VV  V       +++   G    + +WD+  P    PV     +   + +      P
Sbjct: 50  HGEVVCAVTISNPTRHVY--TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 284 FNEWILATGS 293
               ++  G 
Sbjct: 108 DGCTLIVGGE 117

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 20/132 (15%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
             S++  L + P  EW+     +     L   +      +    H+  V  + +      
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAY-CGK 278

Query: 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIS 391
              S      L  W                 P          +S +     +  + ++++
Sbjct: 279 WFVSTGKDNLLNAWRT---------------PYGASIFQSKESSSVLSCDISVDDKYIVT 323

Query: 392 SVAEDNILQIWQ 403
             + D    +++
Sbjct: 324 G-SGDKKATVYE 334

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 12/215 (5%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
           LRGH T     +  +F++ ++++G+DD  I ++D        + + +     H+G V  +
Sbjct: 8   LRGHMTSVI--TCLQFEDNYVITGADDKMIRVYDSI------NKKFLLQLSGHDGGVWAL 59

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293
            +      + GS        +                 + +          N   + TGS
Sbjct: 60  KYAHGGILVSGS----TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115

Query: 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353
            D T+ ++ L K S+     + H   +           +         +           
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175

Query: 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW 388
               D      ++  +   +               
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 210

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
           H + ++ +     ++ IL +GS +    +++LR             ++++ V +  K  T
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--T 336

Query: 332 ILASCCLGRRLMVWDLS 348
           ++A+     +  +  L 
Sbjct: 337 LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279
            +    H  +     +++    L    G +    I++LR+  +     +++    ++  +
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVS--GSENQFNIYNLRSGKLVH--ANILKDADQIWSV 330

Query: 280 AFNPFNEWILATGSTDKTVKLFDL 303
            F    + ++A    D    L  L
Sbjct: 331 NFKG--KTLVAAVEKDGQSFLEIL 352

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 15/191 (7%), Positives = 40/191 (20%), Gaps = 8/191 (4%)

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287
                +++      +    G   ++   D     V   VQ      S V  + F+P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 288 -ILATGSTDKTVKLFDLRK-------ISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339
             L +G     V ++                  F      +  + W+ +   +       
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137

Query: 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399
               V+                       +      +      +    +      + +  
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197

Query: 400 QIWQMAENIYH 410
                 +  + 
Sbjct: 198 DRTHHKQGSFV 208

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN 285
               V DV +         +VG D+ +  +D ++    K ++                 +
Sbjct: 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263

Query: 286 EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF--QVGWNPKNETILASCCLGRRLM 343
           +   AT   D T++++D+   S  +  +   K+++   QVG        + S  L   L 
Sbjct: 264 QK-FATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 344 VWDL 347
            ++L
Sbjct: 322 FYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW 235
              +    + +S      +++   D +I  +D  +    K                  A 
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK----YIEDDQEPVQGGIFAL 258

Query: 236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC--LAFNPFNEWILATGS 293
                  F +VG D  + +WD+ T   SK VQ     + ++    +         + + S
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 294 TDKTVKLFDL 303
            D T+  ++L
Sbjct: 316 LDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 46/328 (14%), Positives = 93/328 (28%), Gaps = 69/328 (21%)

Query: 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-YGL 184
                  Y P    +      SA V   D          D    P ++  GH +     +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDG--------DSKVPPVVQFTGHGSSVVTTV 69

Query: 185 SWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWH----- 236
            +S  K    L SG +  ++ +W      ++ S+E      F+V  G + D++W      
Sbjct: 70  KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

Query: 237 ---------------------------------------LRHEYLFGSVGDDQYLLIWDL 257
                                                          +VGDD  ++ +  
Sbjct: 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189

Query: 258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK 317
                S   ++     S V  + F+P +   + T  +D+ +  FD +      +  D  +
Sbjct: 190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 249

Query: 318 EEVFQVGW-NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK 376
                +   +  +    A+      + VWD++     Q             +        
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK------------WTLDKQQLG 297

Query: 377 ISDFSWNPCEDWVISSVAEDNILQIWQM 404
                     +  I S++ D  L  +++
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 10/143 (6%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-ALHTFDSH-KEEVFQVGWNP-K 328
            ++    L+++P    I         V+  D        +  F  H    V  V ++P K
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CED 387
               L S     +++VW  +   E  + E                   ISD SW+     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS------EFQVLAGPISDISWDFEGRR 129

Query: 388 WVISSVAEDNILQIWQMAENIYH 410
             +     DN             
Sbjct: 130 LCVVGEGRDNFGVFISWDSGNSL 152

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 7e-07
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302
           +   D  + I+ ++ P   K ++++ AH+  VN L +       L +   D  +K ++
Sbjct: 232 TGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 7e-07
 Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 11/147 (7%)

Query: 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323
           + ++++  H   +  L  NP     L +GS D  +  +              H   +  +
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52

Query: 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN 383
             +   E    S     ++          +     A +     +  +      +  F+ +
Sbjct: 53  DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 384 PCEDWVISSVAEDNILQIWQMAENIYH 410
             +   ++S      L    +A  +  
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEE 139

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
            +            E ++ATGS D  + ++ +++    +   ++HK+ V  + W   +  
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-- 270

Query: 332 ILASCCLGRRLMVWD 346
            L S      +  W+
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH 236
                 G +  + +E  + +GS D  I ++ +      + ++ ++    H+  V ++ W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSV-----KRPMKIIKALNAHKDGVNNLLWE 267

Query: 237 LRHEYLFGSVGDDQYLLIWD 256
                   S G D  +  W+
Sbjct: 268 --TPSTLVSSGADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 1e-06
 Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 1/117 (0%)

Query: 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331
           H   +  L+ +   +  L +   +  +  +D+    +     D H   +  +    K + 
Sbjct: 11  HNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW 388
              S     +++    S +D  +   +     P  L +       ++    +     
Sbjct: 70  FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 8e-06
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294
                     +   D  +++W++  PS    +       S VN + +    E  + +   
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQ 288

Query: 295 DKTVKLFDL 303
           D  +K +++
Sbjct: 289 DSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 8/117 (6%)

Query: 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDV 233
             GH+     LS S   +  L S   +  I  WDI+    N+         VH  ++  +
Sbjct: 8   RYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFP-----DVHATMITGI 61

Query: 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290
                 +    +V  D +L +       V           S+   LA +   +  +A
Sbjct: 62  KTT--SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 16/105 (15%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 221 QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280
           Q+   H   +  ++     + LF S   + ++  WD+ T   ++       H + +  + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPD--VHATMITGIK 62

Query: 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW 325
                   L T S D  +K+              ++K     +G 
Sbjct: 63  TTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 105

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 10/181 (5%)

Query: 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299
           +Y+  +      L++ D    +V K +  +             P      AT +  +++ 
Sbjct: 2   DYIL-APARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLV 59

Query: 300 LFDLR----KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355
             DL          L T +   + +F    +P  +T+       R  +       + + T
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF----EVQPT 115

Query: 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDL 415
                D              +I+  +W      +     + +++                
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 416 P 416
            
Sbjct: 176 E 176

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 11/158 (6%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE--GVVEDVAWHLRHEYLFGSVGDDQ 250
           ++L+ +   ++ + D       + +   ++  + +                 + +V   +
Sbjct: 3   YILAPARPDKLVVIDT------EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56

Query: 251 YLLIWDLRTPSV--SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308
            L+  DL T        + +       +   A +P  +  LA   +   ++L       T
Sbjct: 57  SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPT 115

Query: 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
            +  +D+      +    P+  T+LA    G +L    
Sbjct: 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 12/129 (9%), Positives = 30/129 (23%), Gaps = 13/129 (10%)

Query: 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW 235
                      ++         +    +   D+           M+  ++ +      A 
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREVRIMDVFYFSTAV 248

Query: 236 HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295
           +      FG       L  +DL   +  K     V        +  +  +   +  G   
Sbjct: 249 NPAKTRAFG---AYNVLESFDLEKNASIK----RVPLPHSYYSVNVST-DGSTVWLGGAL 300

Query: 296 KTVKLFDLR 304
             +  +D  
Sbjct: 301 GDLAAYDAE 309

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 25/220 (11%), Positives = 63/220 (28%), Gaps = 5/220 (2%)

Query: 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255
           +  +  QI +W++N      +L   Q+     G V+ +       YL+  V  +  +L +
Sbjct: 9   ASPESQQIHVWNLNH---EGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

Query: 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD-LRKISTALHTFD 314
            +     +    +  A    +  ++ +   +++         V +      +   +    
Sbjct: 65  RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 124

Query: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374
              +       +P N T+        R+ ++ +S        + AE    E         
Sbjct: 125 EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184

Query: 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414
                +++   E      V E                  +
Sbjct: 185 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE 224

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 11/115 (9%)

Query: 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCC 337
            A    +E+ +   +    + + D+    T   +     K         P N T      
Sbjct: 2   PALKAGHEY-MIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59

Query: 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISS 392
               +   DL           +           G     +  F+ +P    V ++
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSV--------PGEVGRSMYSFAISPDGKEVYAT 106

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 18/216 (8%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEY 241
           G +     E +++  +    + + D+       S    +   + +            +  
Sbjct: 1   GPALKAGHE-YMIVTNYPNNLHVVDV------ASDTVYKSCVMPDKFGPGTAMMAPDNRT 53

Query: 242 LFGSVGDDQYLLIWDLRTPSVSKPV---QSVVAHQSEVNCLAFNPFNEWILATGS-TDKT 297
            +        +   DL T   +               +   A +P  + + AT + T + 
Sbjct: 54  AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113

Query: 298 VKLFDLRKISTALHTFDSHKE-EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356
              + ++     + +     E +  +    P+   ++ +   G   +        + +T 
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG 173

Query: 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISS 392
           +         + +   + ++    + +    W   S
Sbjct: 174 K-------YTVALPLRNWNRKGYSAPDVLYFWPHQS 202

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 12/120 (10%)

Query: 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244
           +  K  +    +          D+            Q F     +        +      
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGK-----THTQEFADLTELYFTGLRSPKDPNQIY 268

Query: 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304
            V +      +DL+   + K             C+AF+   +  L  G T   + +F+  
Sbjct: 269 GVLNRLA--KYDLKQRKLIK----AANLDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPD 321

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 15/173 (8%), Positives = 44/173 (25%), Gaps = 7/173 (4%)

Query: 241 YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL 300
           + + +  +   + + D+ +  V+      +   S       +P    +    +    V +
Sbjct: 3   FAYIANSESDNISVIDVTSNKVTA----TIPVGSNPMGAVISPDGTKVYVANAHSNDVSI 58

Query: 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360
            D    +T             Q      +   +    +    +    +  +         
Sbjct: 59  IDT---ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413
             P  L     G    +++            + A  N + + +  + I    D
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD 168

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 17/184 (9%), Positives = 42/184 (22%), Gaps = 7/184 (3%)

Query: 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287
           G    +      + +    G    +    + +       +    H  +      +P + +
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGTS--VYTVPVGSL---TDTEIYTEHSHQTTVAKTSP-SGY 71

Query: 288 ILATGSTDKTVKLFDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346
             A+G     V+++D          T       V  + W+ +++ I A      R     
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406
           L            +      +        +I   S +           +           
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 407 NIYH 410
               
Sbjct: 192 VHSV 195

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
           +   +A+ S DKT+K++++        T         Q       +  L S      +  
Sbjct: 249 DGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 345 WDL 347
            + 
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 3/106 (2%)

Query: 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257
             D  I L++     K    E   +  V                   S   D+ + IW++
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267

Query: 258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303
            T  V K +   V  + E   L      +  L + S +  +   + 
Sbjct: 268 ATLKVEKTIP--VGTRIEDQQLGIIWTKQA-LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252
            + S S D  I +W++       +L+  +   V   + +     +  +    S+  + ++
Sbjct: 252 KIASASADKTIKIWNV------ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 253 LIWDL 257
              + 
Sbjct: 306 NFVNP 310

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 14/133 (10%), Positives = 38/133 (28%), Gaps = 28/133 (21%)

Query: 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG------- 244
           G L+  +   +I   D++    +   + +   +          W                
Sbjct: 207 GRLVWPTYTGKIHQIDLS----SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262

Query: 245 ------------SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL-AT 291
                            +++++ D +T               E++ +  +   + +L A 
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLA----KFEMGHEIDSINVSQDEKPLLYAL 318

Query: 292 GSTDKTVKLFDLR 304
            + DKT+ + D  
Sbjct: 319 STGDKTLYIHDAE 331

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.16
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.67
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.98
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.97
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.32
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.97
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.76
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.48
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.96
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.56
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.41
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.09
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.67
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.86
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.96
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.21

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-37  Score=276.07  Aligned_cols=245  Identities=15%  Similarity=0.247  Sum_probs=202.5

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC--
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--  199 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--  199 (424)
                      .+|.+.|++++|+|++. +||+|+.||+|+|||+..        ........+.+|...|.+++|+|++. +|++++.  
T Consensus        55 ~~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~  124 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQ--------TTHILKTTIPVFSGPVKDISWDSESK-RIAAVGEGR  124 (311)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSS--------TTCCEEEEEECSSSCEEEEEECTTSC-EEEEEECCS
T ss_pred             cCCCCCEEEEEEeCCCC-eEeccccCceEeeeeeec--------cccccccccccccCcccccccccccc-ccccccccc
Confidence            47999999999999986 899999999999999987        22333456788999999999999888 6877775  


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +..+++|++++.+.      ...+.+|...|++++|+|+++.+|++|+.||.|++||+++.+.   ......|..+|+++
T Consensus       125 ~~~~~v~~~~~~~~------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~---~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         125 ERFGHVFLFDTGTS------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF---KSTFGEHTKFVHSV  195 (311)
T ss_dssp             SCSEEEEETTTCCB------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE---EEEECCCSSCEEEE
T ss_pred             cccccccccccccc------cccccccccccccccccccceeeeccccccccccccccccccc---cccccccccccccc
Confidence            56699999987643      3456779999999999999998888999999999999998653   66777899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCc
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE  352 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~  352 (424)
                      +|+|++. +|++|+.|+.|++||++. +..+..+       .+|...|++++|+|++. +|++|+.||.|+|||++++  
T Consensus       196 ~~~p~~~-~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~--  270 (311)
T d1nr0a1         196 RYNPDGS-LFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATL--  270 (311)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT--
T ss_pred             ccCcccc-cccccccccccccccccc-ccccccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCC--
Confidence            9999988 699999999999999987 4444433       36889999999999995 7999999999999999875  


Q ss_pred             ccCCCCcCCCCCeeeEEEcCCCC---CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014433          353 EQTPEDAEDGPPELLFIHGGHTS---KISDFSWNPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                                  +++..+..|..   .+.++.|+  +. .|++++.||.|++||++
T Consensus       271 ------------~~~~~l~~~~~~~~~~~~~~~~--~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         271 ------------KVEKTIPVGTRIEDQQLGIIWT--KQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             ------------EEEEEEECCSSGGGCEEEEEEC--SS-CEEEEETTCCEEEEETT
T ss_pred             ------------cEEEEEECCCCccceEEEEEec--CC-EEEEEECCCEEEEEeCC
Confidence                        55666655543   33445554  55 47888999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-36  Score=274.53  Aligned_cols=249  Identities=20%  Similarity=0.298  Sum_probs=207.6

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.+.|++++|+|++. +||+|+.||+|+|||+.+          ......+..|...|.+++|+|++. ++++|+.|
T Consensus        51 L~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~----------~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d  118 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYT----------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLD  118 (340)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTT----------TEEEEEEECSCSCEEEEEECTTSS-EEEEEETT
T ss_pred             ECCCCCCEEEEEECCCCC-EEEEEECCCceeeeeccc----------ceeEEEEecccccEEeeEeeccce-eeeeeccc
Confidence            347999999999999886 899999999999999987          456778889999999999999887 79999999


Q ss_pred             CcEEEEeCCCCCCCCcc---------------------------------------cceeeeecCCccEeeEEEecCCCc
Q 014433          201 AQICLWDINAAPKNKSL---------------------------------------EAMQIFKVHEGVVEDVAWHLRHEY  241 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  241 (424)
                      +.+++|+..........                                       ........+...+....+.+... 
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  197 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-  197 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-
T ss_pred             ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-
Confidence            99999998765322111                                       01111222344566667777665 


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCC
Q 014433          242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEE  319 (424)
Q Consensus       242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~  319 (424)
                      ++++++.|+.|++||++++.   .+..+.+|...|++++|+|++. +|++|+.||.|++||++. ...+..+  ..+...
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~---~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~~~  272 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGM---CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRA-DQELMTYSHDNIICG  272 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTE---EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCTTCCSC
T ss_pred             eeEEeecCceEEEEECCCCc---EEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeecc-cccccccccccccCc
Confidence            66799999999999999865   3777888999999999999987 699999999999999997 4444443  456778


Q ss_pred             EEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcE
Q 014433          320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL  399 (424)
Q Consensus       320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i  399 (424)
                      |.+++|+|++. +|++|+.||.|+|||+.++              .++..+.+|...|++++|+|+++ +|+||+.||.|
T Consensus       273 i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~H~~~V~~l~~s~d~~-~l~s~s~Dg~v  336 (340)
T d1tbga_         273 ITSVSFSKSGR-LLLAGYDDFNCNVWDALKA--------------DRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFL  336 (340)
T ss_dssp             EEEEEECSSSC-EEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSS-CEEEEETTSCE
T ss_pred             eEEEEECCCCC-EEEEEECCCEEEEEECCCC--------------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEccCCEE
Confidence            99999999996 7999999999999999874              66788899999999999999999 58999999999


Q ss_pred             EEEe
Q 014433          400 QIWQ  403 (424)
Q Consensus       400 ~vw~  403 (424)
                      +|||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=272.93  Aligned_cols=248  Identities=17%  Similarity=0.245  Sum_probs=208.7

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      +.......|.+.|.+++|+|++. +|++|+.||.|++||+..        ........+..|...+.+++|+|++. +++
T Consensus        88 ~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  157 (337)
T d1gxra_          88 VSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAA--------PTPRIKAELTSSAPACYALAISPDSK-VCF  157 (337)
T ss_dssp             SEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCC--------C--EEEEEEECSSSCEEEEEECTTSS-EEE
T ss_pred             eEEeeecCCCCcEEEEEEcCCCC-EEEEeecccccccccccc--------cccccccccccccccccccccccccc-ccc
Confidence            33445568999999999999986 789999999999999876        22344566788999999999999887 799


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      +++.|+.|++|++.+.      ........|...|.+++|++++. .+++++.|+.+++||+++++.   +.. ..|...
T Consensus       158 s~~~d~~i~~~~~~~~------~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~---~~~-~~~~~~  226 (337)
T d1gxra_         158 SCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ---LQQ-HDFTSQ  226 (337)
T ss_dssp             EEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE---EEE-EECSSC
T ss_pred             cccccccccccccccc------ccccccccccccccccccccccc-cccccccccccccccccccee---ecc-cccccc
Confidence            9999999999999865      34556677899999999999986 556899999999999998653   433 357889


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |++++|+|++. +|++|+.|+.|++||++. .. ......|...|++++|+|+++ +|++++.||.|++||+..+     
T Consensus       227 i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~-~~-~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~-----  297 (337)
T d1gxra_         227 IFSLGYCPTGE-WLAVGMESSNVEVLHVNK-PD-KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG-----  297 (337)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTS-SC-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC-----
T ss_pred             eEEEEEccccc-ccceeccccccccccccc-cc-cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCC-----
Confidence            99999999987 689999999999999997 33 346678999999999999996 7999999999999999875     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                               ..+... .|...|++++|+|+++ +|++++.||.|+|||+
T Consensus       298 ---------~~~~~~-~~~~~v~~~~~s~d~~-~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         298 ---------ASIFQS-KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---------CEEEEE-ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred             ---------CEEEEc-cCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEE
Confidence                     333333 4778899999999999 6899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-36  Score=270.69  Aligned_cols=244  Identities=22%  Similarity=0.400  Sum_probs=205.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCcee------------------
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGY------------------  182 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~------------------  182 (424)
                      ..+|.++|++|+|+|+++ +||||+.||+|+|||+.+          ......+.+|...|.                  
T Consensus        13 L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYET----------GDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTT----------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC----------CCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            458999999999999886 899999999999999976          233344444444444                  


Q ss_pred             ------------------------EEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC
Q 014433          183 ------------------------GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR  238 (424)
Q Consensus       183 ------------------------~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  238 (424)
                                              ++.|+|++. .+++++.|+.+++||++++      .....+..|...+.+++|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  154 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQD  154 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccc------eeeeEEccCCCcceeeecccC
Confidence                                    455555444 5788888888999988765      245667789999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCC-------------------eEEEEEeCCCcEE
Q 014433          239 HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE-------------------WILATGSTDKTVK  299 (424)
Q Consensus       239 ~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-------------------~~l~tg~~dg~i~  299 (424)
                      +. +|++++.|+.|++|++++...   +..+..|...+.+++|+|++.                   .++++|+.|+.|+
T Consensus       155 ~~-~l~~~~~d~~v~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         155 GT-LIASCSNDQTVRVWVVATKEC---KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             SS-EEEEEETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CC-EEEEEeCCCeEEEEeecccee---eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            86 667999999999999998663   677788999999999988632                   2688999999999


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      +||+++ +.++..+.+|...|.+++|+|++. +|++++.||.|+|||+.++              +++..+.+|...|++
T Consensus       231 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         231 MWDVST-GMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNK--------------RCMKTLNAHEHFVTS  294 (317)
T ss_dssp             EEETTT-TEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTS--------------CCCEEEECCSSCEEE
T ss_pred             EEECCC-CcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCC--------------cEEEEEcCCCCCEEE
Confidence            999998 788999999999999999999996 7999999999999999874              557778899999999


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      ++|+|+++ +|++++.||.|+|||
T Consensus       295 ~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSS-CEEEEETTSEEEEEC
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEeC
Confidence            99999999 688999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.1e-37  Score=275.34  Aligned_cols=255  Identities=19%  Similarity=0.291  Sum_probs=210.8

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +++.+..++++|++. .||.+. ++.|.+|++..          ......+.+|...|++++|+|++. +|++|+.||+|
T Consensus        16 ~r~~~~~~a~~~~g~-~l~~~~-~~~v~i~~~~~----------~~~~~~~~~H~~~v~~~~~sp~g~-~latg~~dg~i   82 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGS----------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNV   82 (311)
T ss_dssp             CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTC----------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred             CCCCeEEEEEcCCCC-EEEEEe-CCEEEEEECCC----------CceeEEEcCCCCCEEEEEEeCCCC-eEeccccCceE
Confidence            455677899999997 566654 66899999987          455677889999999999999987 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC--CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ++||+......    ....+..|..+|.+++|+|++..++ +++.  +..++||++++++.   ...+.+|...|++++|
T Consensus        83 ~iwd~~~~~~~----~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          83 RIWDTTQTTHI----LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTS---NGNLTGQARAMNSVDF  154 (311)
T ss_dssp             EEEESSSTTCC----EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCB---CBCCCCCSSCEEEEEE
T ss_pred             eeeeeeccccc----cccccccccCccccccccccccccc-cccccccccccccccccccc---cccccccccccccccc
Confidence            99999876432    2344677999999999999987554 5654  56699999998654   5667789999999999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED  361 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  361 (424)
                      +|+++++|++|+.||.|++||+++ .+....+..|...|++++|+|++. +|++++.|+.|++||+...........   
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~---  229 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFED---  229 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBC---
T ss_pred             cccceeeecccccccccccccccc-cccccccccccccccccccCcccc-ccccccccccccccccccccccccccc---
Confidence            999998899999999999999998 678888999999999999999986 799999999999999987643222110   


Q ss_pred             CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                          ......+|...|++++|+|+++ +|++|+.||.|+|||+.++.+
T Consensus       230 ----~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         230 ----DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             ----TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ----cccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcE
Confidence                0011247889999999999999 688999999999999988754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=272.44  Aligned_cols=259  Identities=20%  Similarity=0.291  Sum_probs=216.3

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      ...+.+..+.|...|++++|+|+++ +||+|+ ||.|+|||+.......     ........+|...|.+++|+|++. +
T Consensus        40 ~~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~-----~~~~~~~~~h~~~I~~v~~s~dg~-~  111 (337)
T d1gxra_          40 RHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS-----PVSQLDCLNRDNYIRSCKLLPDGC-T  111 (337)
T ss_dssp             SEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS-----CSEEEECSCTTSBEEEEEECTTSS-E
T ss_pred             CCceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccc-----eeEEeeecCCCCcEEEEEEcCCCC-E
Confidence            3567788889999999999999986 799987 8999999998632211     112233457999999999999987 7


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccC
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ  273 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  273 (424)
                      |++|+.||.|++||+.....    .....+..|...+..++|+|++. ++++++.|+.|++||+++++.   ......|.
T Consensus       112 l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~---~~~~~~~~  183 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL---VRQFQGHT  183 (337)
T ss_dssp             EEEEESSSEEEEEECCCC------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE---EEEECCCS
T ss_pred             EEEeeccccccccccccccc----ccccccccccccccccccccccc-ccccccccccccccccccccc---cccccccc
Confidence            99999999999999875432    33455677899999999999886 567999999999999998653   66667889


Q ss_pred             CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      ..|++++|++++. .+++|+.|+.|++||+++ ++.+..+. |...|.+++|+|++. +|++++.|+.+++||++...  
T Consensus       184 ~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~--  257 (337)
T d1gxra_         184 DGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD--  257 (337)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC--
T ss_pred             ccccccccccccc-cccccccccccccccccc-ceeecccc-cccceEEEEEccccc-ccceeccccccccccccccc--
Confidence            9999999999988 688999999999999998 56666554 788999999999985 78999999999999998742  


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                                   ......|...|++++|+|+++ +|++++.||.|++|++.++.
T Consensus       258 -------------~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         258 -------------KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             -------------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred             -------------cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCC
Confidence                         345678899999999999999 78999999999999998764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-35  Score=270.10  Aligned_cols=306  Identities=16%  Similarity=0.192  Sum_probs=226.4

Q ss_pred             CccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE-
Q 014433           43 PSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ-  121 (424)
Q Consensus        43 p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  121 (424)
                      |..++.|.|+.          ..++.|+     .+..|+++...                          .+++..... 
T Consensus         9 pIt~~~~s~dg----------~~la~~~-----~~~~i~iw~~~--------------------------~~~~~~~~~l   47 (371)
T d1k8kc_           9 PISCHAWNKDR----------TQIAICP-----NNHEVHIYEKS--------------------------GNKWVQVHEL   47 (371)
T ss_dssp             CCCEEEECTTS----------SEEEEEC-----SSSEEEEEEEE--------------------------TTEEEEEEEE
T ss_pred             CeEEEEECCCC----------CEEEEEe-----CCCEEEEEECC--------------------------CCCEEEEEEe
Confidence            67799999986          3555554     34578888763                          123333333 


Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -+|.++|++++|+|++. +||+|+.|++|+|||+..        ....+...+.+|...|.+++|+|++. .|++|+.|+
T Consensus        48 ~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~--------~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~  117 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKG--------RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSR  117 (371)
T ss_dssp             ECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEET--------TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             cCCCCCEEEEEECCCCC-EEEEEECCCeEEEEeecc--------cccccccccccccccccccccccccc-cceeecccC
Confidence            47999999999999886 899999999999999976        33344556678999999999999887 799999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---------------CCe
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------------KPV  266 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---------------~~~  266 (424)
                      .|++|++.......  ........|...|.+++|+|++. +|++|+.|+.|++||+......               ..+
T Consensus       118 ~i~i~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         118 VISICYFEQENDWW--VCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             SEEEEEEETTTTEE--EEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             cceeeeeecccccc--ccccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeee
Confidence            99999987654321  12334556889999999999986 5679999999999998754321               123


Q ss_pred             eeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       267 ~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      .....|...|.+++|+|++. +|++++.|+.|++||++. +..+..+..|..+|.+++|+|++. +|++ +.|+.+++|.
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~  270 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADK-KMAVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFT  270 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEE
T ss_pred             eeccCccCcEEEEEeecccc-cccccccCCcceEEeeec-ccceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEE
Confidence            44467888999999999998 689999999999999998 678889999999999999999984 5654 5577777766


Q ss_pred             CCCCCcccCCCC----cC----------------C-------CCCeeeEEEcCCCCCcceEEeCCCCC---cEEEEEeCC
Q 014433          347 LSRIDEEQTPED----AE----------------D-------GPPELLFIHGGHTSKISDFSWNPCED---WVISSVAED  396 (424)
Q Consensus       347 ~~~~~~~~~~~~----~~----------------~-------~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~d  396 (424)
                      ............    ..                +       ...........|.+.|+++++.+.+.   ..|+|+|.|
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~D  350 (371)
T d1k8kc_         271 YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD  350 (371)
T ss_dssp             EETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT
T ss_pred             eeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCC
Confidence            543221110000    00                0       00000111134888999999977542   368999999


Q ss_pred             CcEEEEecCC
Q 014433          397 NILQIWQMAE  406 (424)
Q Consensus       397 g~i~vw~~~~  406 (424)
                      |.|+||++++
T Consensus       351 g~v~iW~~~~  360 (371)
T d1k8kc_         351 GGMSIWDVRS  360 (371)
T ss_dssp             SEEEEEEHHH
T ss_pred             CeEEEEeCCc
Confidence            9999999965

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-35  Score=272.94  Aligned_cols=250  Identities=13%  Similarity=0.146  Sum_probs=204.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      +.++|+|++|+|++. +||+|+.||.|+||+...        ........+.+|.++|.+|+|+|++. +|++|+.|++|
T Consensus         6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~--------~~~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i   75 (371)
T d1k8kc_           6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSG--------NKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNA   75 (371)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEET--------TEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred             CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCC--------CCEEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeE
Confidence            347899999999986 899999999999999876        23445677899999999999999887 89999999999


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCC-eeeeeccCCCeeEEEec
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP-VQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~v~~v~~~  282 (424)
                      ++||+....    ......+..|...|.+++|+|+++ .|++++.|+.+++|++........ ......|...|.+++|+
T Consensus        76 ~vWd~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          76 YVWTLKGRT----WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             EEEEEETTE----EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             EEEeecccc----cccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence            999997642    223444567889999999999986 556999999999999987653111 22335688899999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCC-----------------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKIS-----------------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~-----------------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                      |++. +|++|+.|++|++||+....                 ..+.....|...|.+++|+|++. +|++++.|+.|++|
T Consensus       151 p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iw  228 (371)
T d1k8kc_         151 PNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLA  228 (371)
T ss_dssp             TTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEE
T ss_pred             cccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcceEE
Confidence            9988 68999999999999986421                 23455678899999999999996 79999999999999


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      |+...              ..+..+.+|..+|.+++|+|+++ +|++| .|+.+++|....
T Consensus       229 d~~~~--------------~~~~~~~~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         229 DADKK--------------MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             EGGGT--------------TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             eeecc--------------cceeeeecccccceeeeecCCCC-EEEEE-cCCceEEEEeeC
Confidence            99764              45677788999999999999997 66664 577777766544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=265.80  Aligned_cols=253  Identities=22%  Similarity=0.341  Sum_probs=201.1

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      .......|...|++++|+|++. +|++|+.||.|++|+...          ......+.+|...|.+++|++++. .+++
T Consensus       113 ~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~~~~  180 (388)
T d1erja_         113 NTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIEN----------RKIVMILQGHEQDIYSLDYFPSGD-KLVS  180 (388)
T ss_dssp             ------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTT----------TEEEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred             ccccccCCCCCEEEEEECCCCC-cceecccccccccccccc----------cccccccccccccccccccccccc-cccc
Confidence            3344557899999999999886 899999999999999887          455677888999999999999877 7999


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC----Ceeeeecc
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK----PVQSVVAH  272 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~----~~~~~~~~  272 (424)
                      ++.++.+++||+.+..      ...... +.....++.+++....+|++++.||.|++||++++....    ......+|
T Consensus       181 ~~~~~~i~~~d~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         181 GSGDRTVRIWDLRTGQ------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             EETTSEEEEEETTTTE------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             cccceeeeeeeccccc------cccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence            9999999999997652      223333 445566677777666688899999999999998865311    11223468


Q ss_pred             CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-----------CcceEecCCCCCEEEEEEcCCCCcEEEEEECCCe
Q 014433          273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-----------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR  341 (424)
Q Consensus       273 ~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~  341 (424)
                      ...|++++|+|++. +|++|+.||.|++||++...           ........|...|.+++|+|+++ +|++|+.||.
T Consensus       254 ~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~  331 (388)
T d1erja_         254 KDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRG  331 (388)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSE
T ss_pred             CCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCE
Confidence            88999999999988 68999999999999998632           22445567889999999999996 7999999999


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe------CCCCCcEEEEEeCCCcEEEEecC
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW------NPCEDWVISSVAEDNILQIWQMA  405 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~l~s~~~dg~i~vw~~~  405 (424)
                      |++||++++              +++..+.+|.+.|.++++      +|+++ +|+||+.||+|+||+++
T Consensus       332 i~vwd~~~~--------------~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         332 VLFWDKKSG--------------NPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTTC--------------CEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCC--------------cEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence            999999875              567888999999998875      66788 79999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-34  Score=262.08  Aligned_cols=275  Identities=19%  Similarity=0.273  Sum_probs=202.9

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCC--------CCCCCCCcEEEecCCCceeEEEec
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--------LDGACSPDLRLRGHSTEGYGLSWS  187 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~  187 (424)
                      +.+...+.|.+.|+||+|+|+|. +||+|+ |+.|+|||+.+......        .............|...|++++|+
T Consensus        53 ~~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s  130 (388)
T d1erja_          53 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS  130 (388)
T ss_dssp             EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred             eeeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC
Confidence            45667788999999999999986 889986 89999999976211000        000111122344678889999999


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee
Q 014433          188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ  267 (424)
Q Consensus       188 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~  267 (424)
                      |++. +|++|+.||.|++||...+      ..+....+|...|.++++++++. .+++++.++.+++||+++...   ..
T Consensus       131 ~~~~-~l~s~~~dg~v~i~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~---~~  199 (388)
T d1erja_         131 PDGK-FLATGAEDRLIRIWDIENR------KIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQC---SL  199 (388)
T ss_dssp             TTSS-EEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE---EE
T ss_pred             CCCC-cceeccccccccccccccc------ccccccccccccccccccccccc-cccccccceeeeeeecccccc---cc
Confidence            9887 8999999999999999765      34566778999999999999886 456899999999999987553   33


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE-------ecCCCCCEEEEEEcCCCCcEEEEEECCC
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT-------FDSHKEEVFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------~~~h~~~v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      ... +.....++.+.+....+|++|+.||.|++||+++ ...+..       ..+|...|.+++|+|++. +|++++.||
T Consensus       200 ~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~  276 (388)
T d1erja_         200 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDR  276 (388)
T ss_dssp             EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred             ccc-cccccccccccCCCCCeEEEEcCCCeEEEeeccc-CccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCC
Confidence            333 4455566666665445899999999999999987 443333       346889999999999996 799999999


Q ss_pred             eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .|++||++............  ..........|...|.+++|+|+++ +|++|+.||.|++||+.++..
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPN--SGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             EEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCE
T ss_pred             cEEEEeccCCcccccccccc--ccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcE
Confidence            99999998765433222111  1245566778999999999999999 689999999999999987643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9e-34  Score=252.87  Aligned_cols=253  Identities=18%  Similarity=0.290  Sum_probs=191.2

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCceeEEEecCCCCceEEEEeC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ..+|.+.|++++|+|+++ +||+|+.||+|++||+.+          ......+ .+|...|++++|+|++.  +++++.
T Consensus         8 ~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~----------~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~   74 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGK-TLFSADAEGHINSWDIST----------GISNRVFPDVHATMITGIKTTSKGD--LFTVSW   74 (299)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT----------CCEEECSSCSCSSCEEEEEECTTSC--EEEEET
T ss_pred             cCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCC----------CcEEEEEcCCCCCcEEEEEeeccce--eecccc
Confidence            458999999999999886 899999999999999986          2333334 36899999999999875  777888


Q ss_pred             CCcEEEEeCCCCCCCCcc---------------------------cceee-------eecCCccEeeEEEecCCCcEEEE
Q 014433          200 DAQICLWDINAAPKNKSL---------------------------EAMQI-------FKVHEGVVEDVAWHLRHEYLFGS  245 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~---------------------------~~~~~-------~~~~~~~v~~~~~~~~~~~~~~s  245 (424)
                      |+.+++|++.........                           ..+..       .......+.+++|+|++. ++++
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~  153 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAV  153 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEE
T ss_pred             eeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            999999998654221000                           00000       001234577888999876 5679


Q ss_pred             EeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--cceEecCCCCCEEEE
Q 014433          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEEVFQV  323 (424)
Q Consensus       246 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~h~~~v~~~  323 (424)
                      |+.||.|++||+++...  .......|...|++++|+|++. +|++++.|+.|++||+.+...  ....+..|...|+++
T Consensus       154 g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             EETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             ccccccccccccccccc--cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            99999999999987653  1123356889999999999988 689999999999999986322  344567799999999


Q ss_pred             EEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014433          324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVAEDNILQIW  402 (424)
Q Consensus       324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vw  402 (424)
                      +|+|++. +|++|+.||.|+|||++....            ........| ...|..+.| ++++ .|++++.|+.|++|
T Consensus       231 ~~s~~~~-~l~sgs~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~-~~~~-~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         231 SWSPDNV-RLATGSLDNSVIVWNMNKPSD------------HPIIIKGAHAMSSVNSVIW-LNET-TIVSAGQDSNIKFW  295 (299)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTCTTS------------CCEEETTSSTTSCEEEEEE-EETT-EEEEEETTSCEEEE
T ss_pred             ccccccc-ceEEEcCCCEEEEEECCCCCc------------ceEEEecCCCCCcEEEEEE-CCCC-EEEEEeCCCEEEEE
Confidence            9999996 799999999999999987532            222333344 445666655 4566 68899999999999


Q ss_pred             ecC
Q 014433          403 QMA  405 (424)
Q Consensus       403 ~~~  405 (424)
                      |+.
T Consensus       296 dl~  298 (299)
T d1nr0a2         296 NVP  298 (299)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=255.38  Aligned_cols=259  Identities=14%  Similarity=0.139  Sum_probs=197.2

Q ss_pred             EeccC-CceeEEEecCC-CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          121 QINHD-GEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~-~~v~~~~~~p~-~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+|. ..|++++|+|. +..+||+|+.||+|+|||+........  ........+..|.++|.+++|++++. +|++++
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~  134 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS--VEVNVKSEFQVLAGPISDISWDFEGR-RLCVVG  134 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE--EEEEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee--eecccccccccccCcEEEEEECCCCC-ccceee
Confidence            34664 68999999984 335899999999999999865211100  00111123556889999999999988 566554


Q ss_pred             --CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          199 --DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       199 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                        .++.+.+|+.+++      ..+..+.+|...|++++|+|+++.++++++.|+.+++||++..+..........|...|
T Consensus       135 ~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         135 EGRDNFGVFISWDSG------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  208 (325)
T ss_dssp             CCSSCSEEEEETTTC------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             ccccceEEEEeeccc------ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence              4778999999765      34566778999999999999998888899999999999998755322233345678889


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc---CCCCcEEEEEECCCeEEEeeCCCCCcc
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN---PKNETILASCCLGRRLMVWDLSRIDEE  353 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~l~s~~~dg~i~iwd~~~~~~~  353 (424)
                      ++++|+|++..+|++|+.||.|++||+++ ++.+..+.+|..++.++.|+   |++. +|++++.|+.|+|||++.+   
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~---  283 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTS---  283 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTT---
T ss_pred             EEeeeccccceeccccccccceeeeeecc-ccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCC---
Confidence            99999998666899999999999999998 78888999888877666665   5664 7999999999999999875   


Q ss_pred             cCCCCcCCCCCeeeEEEcCCCCC--cceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          354 QTPEDAEDGPPELLFIHGGHTSK--ISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                                 +++..+..|...  +..+++.+.+...|++++.||.|+|||+
T Consensus       284 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         284 -----------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -----------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             -----------CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence                       455555555443  4445554443336889999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-31  Score=239.52  Aligned_cols=256  Identities=16%  Similarity=0.244  Sum_probs=197.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CceeEEEecCCC-CceEEEEeCCCc
Q 014433          126 GEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFK-EGHLLSGSDDAQ  202 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-~~~l~s~~~dg~  202 (424)
                      +.+++++|+|++. .||.++.+. .|+.|+...        ........+.+|. ..|++++|+|.. ..+|++|+.||+
T Consensus        18 ~~~t~l~~~~~~~-~la~~~~~~~~i~~~~~~~--------~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~   88 (325)
T d1pgua1          18 NFTTHLSYDPTTN-AIAYPCGKSAFVRCLDDGD--------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK   88 (325)
T ss_dssp             TCCCCCEEETTTT-EEEEEETTEEEEEECCSSC--------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CCeEEEEECCCCC-EEEEEeCCCEEEEEEeCCC--------CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence            3567899999987 566655433 355566444        2344566777875 679999999853 247899999999


Q ss_pred             EEEEeCCCCCCCCccc--ceeeeecCCccEeeEEEecCCCcEEEEE-eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          203 ICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWHLRHEYLFGSV-GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      |++||+........+.  ....+..|.++|.+++|++++..+++++ +.++.+++|+..++.   .+..+.+|...|+++
T Consensus        89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~  165 (325)
T d1pgua1          89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINAC  165 (325)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEE
T ss_pred             EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc---cceeeeecccccccc
Confidence            9999997654332221  1223556889999999999998765443 347789999998765   477788899999999


Q ss_pred             EecCCCCeEEEEEeCCCcEEEEECCCCCCcceE---ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCC
Q 014433          280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHT---FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  356 (424)
                      +|+|+++.++++++.|+.|++||++. .+....   ...|...|.+++|+|++..+|++++.|+.|++||++++      
T Consensus       166 ~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------  238 (325)
T d1pgua1         166 HLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------  238 (325)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------
T ss_pred             cccccccceEEEeecccccccccccc-cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc------
Confidence            99999988888999999999999986 333333   34677889999999987678999999999999999875      


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeC---CCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWN---PCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                              +.+..+.+|...+..+.|+   |+++ +|++++.|+.|+|||+.++.+
T Consensus       239 --------~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         239 --------EFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             --------CEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEE
T ss_pred             --------cccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCE
Confidence                    5567778888887777666   6788 689999999999999987753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-32  Score=239.21  Aligned_cols=241  Identities=14%  Similarity=0.261  Sum_probs=182.2

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      ..+|.++|++++|+|     |++|+.||+|++||+.+               ...+|...|.++++++..  .+++++.|
T Consensus         9 l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~---------------~~~~h~~~V~~~~~~~~~--~~~s~s~D   66 (287)
T d1pgua2           9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS---------------MHQDHSNLIVSLDNSKAQ--EYSSISWD   66 (287)
T ss_dssp             ECCCSSCEEEEETTT-----TEEEETTSCEEETTTTE---------------EECCCCSCEEEEECCSTT--CCEEEETT
T ss_pred             ECCCCCceEEEEECc-----EEEEeCCCeEEEEECCC---------------CCCCCCCCEEEEEecCCC--eEEEEeec
Confidence            347999999999987     89999999999999865               245799999999998754  48999999


Q ss_pred             CcEEEEeCCCCCCCCcc----------------------------cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeE
Q 014433          201 AQICLWDINAAPKNKSL----------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL  252 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  252 (424)
                      ++|++|++.........                            ..+..+. +...  ..++++++..+++++..++.+
T Consensus        67 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSEEEEEETTTSCE
T ss_pred             cccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccce--eeeeeccCcceeeecccccee
Confidence            99999987643221100                            0111111 1122  234566666555444444579


Q ss_pred             EEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCC---
Q 014433          253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN---  329 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~---  329 (424)
                      ++|++.....  .......|...+++++|+|++. +|++|+.||.|++||+.+.......+..|..+|.+++|+|.+   
T Consensus       144 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         144 QVFKLSDLEV--SFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEEETTEEEE--EEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeccccce--eeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            9999876432  1122234778899999999998 699999999999999998444445577899999999999854   


Q ss_pred             ------CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          330 ------ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       330 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                            ..+|++|+.|++|+|||++...             .++..+.+|...|++++|+|++.  |+|++.|+.|++|+
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~-------------~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~  285 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPM-------------KIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWN  285 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTT-------------CCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCC-------------eEEEEeCCCCCCeEEEEECCCCE--EEEEECCCeEEEEE
Confidence                  2479999999999999997632             55677789999999999999864  78889999999999


Q ss_pred             c
Q 014433          404 M  404 (424)
Q Consensus       404 ~  404 (424)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=229.51  Aligned_cols=243  Identities=18%  Similarity=0.270  Sum_probs=186.2

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      .+|.+.|.+ ++++++. +||||+.||+|+|||+.+          .++...+.+|...|.+++|+|+   +|++|+.|+
T Consensus        13 ~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~----------~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~   77 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVT----------GKCLRTLVGHTGGVWSSQMRDN---IIISGSTDR   77 (342)
T ss_dssp             ECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTT----------CCEEEECCCCSSCEEEEEEETT---EEEEEETTS
T ss_pred             CCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCC----------CCEEEEEeCCCCCEEEEEeCCC---ccccceecc
Confidence            389998864 3555565 899999999999999987          5667889999999999999873   799999999


Q ss_pred             cEEEEeCCCCCCCCc--------------------------c--------------------------------------
Q 014433          202 QICLWDINAAPKNKS--------------------------L--------------------------------------  217 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~--------------------------~--------------------------------------  217 (424)
                      .+++|+.........                          +                                      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999765321000                          0                                      


Q ss_pred             ----------cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCe
Q 014433          218 ----------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW  287 (424)
Q Consensus       218 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  287 (424)
                                ..+..+.+|...+..+  .+++. .+++++.||.|++||++..+   .+..+..|...+.++++++  . 
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~s~~~dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~--~-  228 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSL--QFDGI-HVVSGSLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKD--N-  228 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEE--EECSS-EEEEEETTSCEEEEETTTCC---EEEEECCCCSCEEEEEEET--T-
T ss_pred             eEEEeecccceeeEEEcCcccccccc--cCCCC-EEEEEeCCCeEEEeecccce---eeeEecccccceeEEecCC--C-
Confidence                      1112223344334333  34444 56799999999999999865   4777888999999999875  3 


Q ss_pred             EEEEEeCCCcEEEEECCCCCCcceEec---CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCC
Q 014433          288 ILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP  364 (424)
Q Consensus       288 ~l~tg~~dg~i~iwd~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  364 (424)
                      +|++|+.||.|++||+.. .+....+.   .|...+.++.+++   .++++|+.||.|+|||++++.             
T Consensus       229 ~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~-------------  291 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGE-------------  291 (342)
T ss_dssp             EEEEEETTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC-------------
T ss_pred             EEEEEcCCCEEEEEeccc-ccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCC-------------
Confidence            699999999999999987 45555554   4566788888765   379999999999999998763             


Q ss_pred             eeeEEE-----cCCCCCcceEEeCCCCCcEEEEEeCCCc----EEEEecCCc
Q 014433          365 ELLFIH-----GGHTSKISDFSWNPCEDWVISSVAEDNI----LQIWQMAEN  407 (424)
Q Consensus       365 ~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~dg~----i~vw~~~~~  407 (424)
                       ++..+     .+|...|++++|+|++. +|++|+.||+    |++||+...
T Consensus       292 -~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         292 -FIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             -EEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCCC
T ss_pred             -EEEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCCC
Confidence             33332     36778899999999988 7999999985    999999754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=222.94  Aligned_cols=244  Identities=21%  Similarity=0.404  Sum_probs=191.4

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .|...|+|++|  ++. +||||+.||+|+|||+.+          .+....+.+|...|++++|+  +. +|++|+.||.
T Consensus        13 ~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~----------~~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~~   76 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNT----------LECKRILTGHTGSVLCLQYD--ER-VIITGSSDST   76 (293)
T ss_dssp             SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSS----------CCEEEEECCCSSCEEEEECC--SS-EEEEEETTSC
T ss_pred             CCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCC----------CcEEEEEecCCCCEeeeecc--cc-eeeccccccc
Confidence            57788998776  454 899999999999999987          56778899999999999985  34 8999999999


Q ss_pred             EEEEeCCCCCCCCcc-------------------------------------cceeeeecCCccEeeEEEecCCCcEEEE
Q 014433          203 ICLWDINAAPKNKSL-------------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGS  245 (424)
Q Consensus       203 i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~s  245 (424)
                      |++|++..+......                                     .....+..|...+..+.+.+.   .+++
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~  153 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVS  153 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEE
T ss_pred             ccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cccc
Confidence            999999765321000                                     112223445666766666543   4568


Q ss_pred             EeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEE
Q 014433          246 VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW  325 (424)
Q Consensus       246 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~  325 (424)
                      ++.|+.|++||+++.+.   +..+.++...+..+.+++  . .+++++.||.|++||+++ ...+..+..|...+..+  
T Consensus       154 ~s~d~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~--  224 (293)
T d1p22a2         154 ASGDRTIKVWNTSTCEF---VRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCI--  224 (293)
T ss_dssp             EETTSEEEEEETTTCCE---EEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEE--
T ss_pred             ccCCCceeeecCCCCcE---EEEEcccccccccccCCC--C-eEEEecCCCEEEEEeccc-ceeeeeecccceeeeec--
Confidence            89999999999998663   777788888899888874  3 689999999999999998 67888888888888764  


Q ss_pred             cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014433          326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ  403 (424)
Q Consensus       326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~  403 (424)
                      ++++ .+|++++.||.|++||+..........     ....+..+.+|.+.|++++|+  +. .|+|++.||+|+|||
T Consensus       225 ~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~H~~~V~~v~~d--~~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDN-KRIVSGAYDGKIKVWDLVAALDPRAPA-----GTLCLRTLVEHSGRVFRLQFD--EF-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCS-SEEEEEETTSCEEEEEHHHHTSTTSCT-----TTTEEEEECCCSSCCCCEEEC--SS-CEEECCSSSEEEEEC
T ss_pred             cccc-eEEEEEcCCCEEEEEECCCCccccccC-----CceeeEEecCCCCCEEEEEEc--CC-EEEEEecCCEEEEeC
Confidence            4455 479999999999999987654332221     235677889999999999996  44 589999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.4e-29  Score=221.55  Aligned_cols=217  Identities=21%  Similarity=0.369  Sum_probs=178.9

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc---------------------------------
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL---------------------------------  217 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------------------  217 (424)
                      ...|.+|.+.|++|+|+|+++ +|++|+.||+|+|||+.+++....+                                 
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            457999999999999999887 8999999999999999876432111                                 


Q ss_pred             ---cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC
Q 014433          218 ---EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST  294 (424)
Q Consensus       218 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~  294 (424)
                         .....+..|...+.++.|++++. .+++++.|+.+++||++++..   +..+..|...+.+++|+|++. +|++|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~l~~~~~  163 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYC---VKTFTGHREWVRMVRPNQDGT-LIASCSN  163 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE---EEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred             cccccccccccccccceeeeccCCCc-eEEeeccCcceeEeeccccee---eeEEccCCCcceeeecccCCC-EEEEEeC
Confidence               01111223444555555565554 356889999999999998663   777788999999999999987 6999999


Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC-------------------cEEEEEECCCeEEEeeCCCCCcccC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE-------------------TILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~-------------------~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      |+.|++|++++ ...+..+..|...+.+++|+|++.                   .++++++.|+.|++||++++     
T Consensus       164 d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----  237 (317)
T d1vyhc1         164 DQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----  237 (317)
T ss_dssp             TSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----
T ss_pred             CCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-----
Confidence            99999999998 678888999999999999998642                   36889999999999999874     


Q ss_pred             CCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                               .++..+.+|...|.+++|+|+++ +|++++.||.|+|||+.++..
T Consensus       238 ---------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         238 ---------MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRC  281 (317)
T ss_dssp             ---------EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCC
T ss_pred             ---------cEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcE
Confidence                     66788889999999999999999 688999999999999987643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=228.82  Aligned_cols=248  Identities=17%  Similarity=0.229  Sum_probs=181.7

Q ss_pred             EEeccCCce-eEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          120 QQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       120 ~~~~h~~~v-~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ...+|.+.| +|++|+  +. +||||+.||+|+|||+.+          .+.+..+.+|.+.|++|+|+|+ . +|++|+
T Consensus         7 tL~GH~~~vitc~~~~--~~-~l~tgs~Dg~i~vWd~~~----------~~~~~~l~~H~~~V~~l~~s~~-~-~l~s~s   71 (355)
T d1nexb2           7 TLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSIN----------KKFLLQLSGHDGGVWALKYAHG-G-ILVSGS   71 (355)
T ss_dssp             EEECCSSSCEEEEEEE--TT-EEEEEETTTEEEEEETTT----------TEEEEEEECCSSCEEEEEEETT-T-EEEEEE
T ss_pred             EECCcCCCcEEEEEEC--CC-EEEEEeCCCeEEEEECCC----------CcEEEEEECCCCCEEEEEEcCC-C-EEEEEe
Confidence            345898875 677664  44 899999999999999987          5667889999999999999984 3 799999


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC---------------
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------------  263 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---------------  263 (424)
                      .||.|++|++......    .......+........+.+++. .+++++.|+.|++||++.....               
T Consensus        72 ~D~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d1nexb2          72 TDRTVRVWDIKKGCCT----HVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  146 (355)
T ss_dssp             TTCCEEEEETTTTEEE----EEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred             cccccccccccccccc----cccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence            9999999999765321    1111112233344455555543 4557777777777776543210               


Q ss_pred             ---------------------------------------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          264 ---------------------------------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       264 ---------------------------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                                                                   +.+.....+...+.++.|+|.+. .+++++.|+.|
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i  225 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTI  225 (355)
T ss_dssp             TTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred             cccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccceE
Confidence                                                         11223344666788899999888 68899999999


Q ss_pred             EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      ++||+++ +.++..+.+|...|.+++|++   .+|++++.||.|++||++...                ..+..|...+.
T Consensus       226 ~i~d~~~-~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~  285 (355)
T d1nexb2         226 RIWDLEN-GELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS----------------RKFSYHHTNLS  285 (355)
T ss_dssp             EEEETTT-CCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC----------------EEEEEECTTCC
T ss_pred             Eeeeccc-ccccccccccccccccccccc---ceeeeeecccccccccccccc----------------eecccccCCce
Confidence            9999998 788899999999999999975   379999999999999998642                12234555566


Q ss_pred             eEE-eCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          379 DFS-WNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       379 ~~~-~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      .+. +++++. ++++| .||.|+|||+.++.+.
T Consensus       286 ~~~~~~~~~~-~l~~g-~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         286 AITTFYVSDN-ILVSG-SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             CCCEEEECSS-EEEEE-ETTEEEEEETTTCCBC
T ss_pred             EEEEEcCCCC-EEEEE-eCCEEEEEECCCCCEE
Confidence            554 566666 66665 4899999999987653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=233.06  Aligned_cols=274  Identities=13%  Similarity=0.152  Sum_probs=187.2

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEE------EecCCCCceEEE
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGL------SWSKFKEGHLLS  196 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l------~~~~~~~~~l~s  196 (424)
                      +|.+.|.++++++   .++++|+.|++|+|||........+    .........|...+..+      ..+.....++++
T Consensus        12 ~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_          12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP----KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG----GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             cccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcc----cceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            7999999999875   3799999999999999765322111    11223333455443322      222222236789


Q ss_pred             EeCCCcEEEEeCCCCCCCCccccee----eeecCCccEeeEEEecCCC----cEEEEEeCCCeEEEEEcCCCCC------
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQ----IFKVHEGVVEDVAWHLRHE----YLFGSVGDDQYLLIWDLRTPSV------  262 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~----~~~~s~~~dg~i~i~d~~~~~~------  262 (424)
                      ++.||.|++|++.............    ....+...+..++|.++..    ..+++++.||.+++|++.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999987654432221100    1122455677888877642    4677999999999999864221      


Q ss_pred             --CCC-------eeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce------EecCCCCCEEEEEEcC
Q 014433          263 --SKP-------VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH------TFDSHKEEVFQVGWNP  327 (424)
Q Consensus       263 --~~~-------~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~------~~~~h~~~v~~~~~sp  327 (424)
                        ...       ......+...+++++|+|++  +||+|+.||+|+|||+++ ++++.      .+.+|..+|++++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecc-cccccccccccccccccceEEEccccc
Confidence              000       11112345678999999986  689999999999999997 44443      3457899999999999


Q ss_pred             CCCcEEEEEECCC---eEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          328 KNETILASCCLGR---RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       328 ~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      ++. +|++|+.|+   .|++||+..+.......... ..........+|...|++++|+|+++ +|+|++.|++|+|||+
T Consensus       242 dg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~-~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         242 QGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPT-HSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             STT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEET
T ss_pred             ccc-eeeeecCCCCcceeeecccccceeeeeecccc-ccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEEC
Confidence            996 799999887   49999998875443322111 11233344568999999999999999 7999999999999999


Q ss_pred             CCccC
Q 014433          405 AENIY  409 (424)
Q Consensus       405 ~~~~~  409 (424)
                      .++.+
T Consensus       319 ~~g~~  323 (393)
T d1sq9a_         319 KTKER  323 (393)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            88743

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9.4e-29  Score=223.34  Aligned_cols=217  Identities=19%  Similarity=0.352  Sum_probs=177.7

Q ss_pred             CCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      .+...+|+||.+.|++|+|+|++. +|++|+.||+|++||+.++      ..+..+..|...|.+++|+|++. ++++|+
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~------~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~  116 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTT------NKVHAIPLRSSWVMTCAYAPSGN-YVACGG  116 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTT------EEEEEEECSCSCEEEEEECTTSS-EEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccc------eeEEEEecccccEEeeEeeccce-eeeeec
Confidence            455678999999999999999887 8999999999999999876      34666788999999999999987 567999


Q ss_pred             CCCeEEEEEcCCCCCCCC------------------------------------------eeeeeccCCCeeEEEecCCC
Q 014433          248 DDQYLLIWDLRTPSVSKP------------------------------------------VQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       248 ~dg~i~i~d~~~~~~~~~------------------------------------------~~~~~~~~~~v~~v~~~~~~  285 (424)
                      .|+.+++|+.........                                          ......+...+....+.+.+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence            999999999765432110                                          01112234456777777767


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCe
Q 014433          286 EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPE  365 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  365 (424)
                      . ++++|+.|+.|++||+++ ..++..+.+|...|++++|+|++. +|++|+.||.|++|+++....            .
T Consensus       197 ~-~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~------------~  261 (340)
T d1tbga_         197 R-LFVSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQE------------L  261 (340)
T ss_dssp             S-EEEEEETTTEEEEEETTT-TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE------------E
T ss_pred             c-eeEEeecCceEEEEECCC-CcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccccc------------c
Confidence            6 789999999999999998 788899999999999999999995 799999999999999987532            1


Q ss_pred             eeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          366 LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      .......|...|..++|+|+++ +|++|+.||.|++||+.++.
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCc
Confidence            2223345667799999999999 68999999999999998764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.7e-29  Score=222.61  Aligned_cols=270  Identities=11%  Similarity=0.119  Sum_probs=188.4

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA  201 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  201 (424)
                      -+|.+.|++|+|+|+++ +||+|+.||+|+|||+....       .........+|..+|.+++|+|++..+|++|+.||
T Consensus         8 ~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~-------~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQA-------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             SCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTT-------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCC-------cceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            36899999999999886 89999999999999997621       11122334479999999999998776899999999


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccE-eeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee-eeec--cCCCee
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVA--HQSEVN  277 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~--~~~~v~  277 (424)
                      .|++|++.....      ......+.... ....+.+.. ..+++++.++.+++||++......... ....  ......
T Consensus        80 ~v~~w~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          80 EILKVDLIGSPS------FQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             CEEEECSSSSSS------EEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             ceeeeecccccc------ccccccccccccccccccccc-ccccccccccccceeeccccccceeeecccccccccceee
Confidence            999999987643      12222233333 333444444 567799999999999998755321111 1111  122345


Q ss_pred             EEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC
Q 014433          278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT  355 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~  355 (424)
                      .+.+.+.+. .+++++.|+.|++||++.....  ......+...+.+..+.+.....+++++.||.+.+|++........
T Consensus       153 ~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         153 IFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            556666666 6889999999999999874322  2233445567778888776667899999999999999876543322


Q ss_pred             CCCcCC-CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          356 PEDAED-GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       356 ~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      ...... ..........+|...|++++|+|+++ +|+||+.||.|+|||+.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCc
Confidence            111000 00011112245667889999999999 69999999999999998763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1e-28  Score=219.82  Aligned_cols=217  Identities=21%  Similarity=0.285  Sum_probs=169.4

Q ss_pred             CcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeee-ecCCccEeeEEEecCCCcEEEEEeC
Q 014433          170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      ....+.||...|++|+|+|++. +|++|+.||+|++||++++..      ...+ ..|...|++++|+|++. ++ +++.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~------~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~   74 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS------NRVFPDVHATMITGIKTTSKGD-LF-TVSW   74 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE------EECSSCSCSSCEEEEEECTTSC-EE-EEET
T ss_pred             cceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE------EEEEcCCCCCcEEEEEeeccce-ee-cccc
Confidence            3567899999999999999887 899999999999999987632      2333 46889999999999985 44 6778


Q ss_pred             CCeEEEEEcCCCCCCCCee------------------------------e-------eeccCCCeeEEEecCCCCeEEEE
Q 014433          249 DQYLLIWDLRTPSVSKPVQ------------------------------S-------VVAHQSEVNCLAFNPFNEWILAT  291 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~------------------------------~-------~~~~~~~v~~v~~~~~~~~~l~t  291 (424)
                      |+.+++|++..........                              .       .......+.+++|+|++. +|++
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~  153 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAV  153 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEE
T ss_pred             eeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            9999999976432110000                              0       001234577888999887 6899


Q ss_pred             EeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc
Q 014433          292 GSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG  371 (424)
Q Consensus       292 g~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  371 (424)
                      |+.||.|++||+++..........|...|++++|+|++. +|++++.|+.|++||+.......           ....+.
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~-----------~~~~~~  221 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELA-----------HTNSWT  221 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEES-----------CCCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-----------cccccc
Confidence            999999999999873222234456899999999999985 79999999999999998754321           223456


Q ss_pred             CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       372 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +|...|++++|+|+++ +|++++.||.|++||+.++..
T Consensus       222 ~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         222 FHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTS
T ss_pred             cccccccccccccccc-ceEEEcCCCEEEEEECCCCCc
Confidence            7889999999999999 699999999999999987643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-27  Score=214.25  Aligned_cols=296  Identities=10%  Similarity=0.062  Sum_probs=208.6

Q ss_pred             ccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEec
Q 014433           44 SLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQIN  123 (424)
Q Consensus        44 ~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (424)
                      ..+++|.|+.          ..|+.|+     .+..|+++.+...                        .....+.....
T Consensus        14 I~~l~fsp~~----------~~L~s~s-----~Dg~v~iwd~~~~------------------------~~~~~~~~~~~   54 (342)
T d1yfqa_          14 ISDIKIIPSK----------SLLLITS-----WDGSLTVYKFDIQ------------------------AKNVDLLQSLR   54 (342)
T ss_dssp             EEEEEEEGGG----------TEEEEEE-----TTSEEEEEEEETT------------------------TTEEEEEEEEE
T ss_pred             EEEEEEeCCC----------CEEEEEE-----CCCeEEEEEccCC------------------------CcceEEEEecC
Confidence            4588999975          4566665     4678999988522                        22445566778


Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCce-eEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-YGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      |.++|.+++|+|++..+|++|+.||.|++|++..          .........+.... ....+.+ +...+++++.++.
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  123 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG----------SPSFQALTNNEANLGICRICKY-GDDKLIAASWDGL  123 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS----------SSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSE
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeeccc----------cccccccccccccccccccccc-ccccccccccccc
Confidence            9999999999998777999999999999999987          23333344444443 3344444 4447999999999


Q ss_pred             EEEEeCCCCCCCCcccceeeeec--CCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      +++||++........  ......  .......+.+.+.+. .+++++.|+.|++||++.............+...+.+..
T Consensus       124 ~~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (342)
T d1yfqa_         124 IEVIDPRNYGDGVIA--VKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA  200 (342)
T ss_dssp             EEEECHHHHTTBCEE--EEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred             cceeeccccccceee--ecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeE
Confidence            999998765432221  111111  223344556666665 566999999999999998775545555555666777777


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEee
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTA--------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD  346 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------------~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd  346 (424)
                      +.+.....+++++.||.+.+|++......              ......|...|++++|+|+++ +||+|+.||.|+|||
T Consensus       201 ~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWN  279 (342)
T ss_dssp             ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEE
T ss_pred             eecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEE
Confidence            77766668999999999999998753211              111234667899999999996 799999999999999


Q ss_pred             CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      +.+.              +.+..+..+ ..+..++|+|+++ ++++++.|+.+++|......+
T Consensus       280 ~~~~--------------~~l~~~~~~-~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~~~~~  326 (342)
T d1yfqa_         280 LQTR--------------KKIKNFAKF-NEDSVVKIACSDN-ILCLATSDDTFKTNAAIDQTI  326 (342)
T ss_dssp             TTTT--------------EEEEECCCC-SSSEEEEEEECSS-EEEEEEECTHHHHCSSSCTTS
T ss_pred             CCCC--------------cEEEEecCC-CCCEEEEEEeCCC-EEEEEEcCCcEEEeeeeCCCc
Confidence            9875              445555433 2355677888888 577777788888887655443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.9e-28  Score=218.95  Aligned_cols=244  Identities=16%  Similarity=0.240  Sum_probs=177.1

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCCCCceEEEEe
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+|.+.|++++|+|++  +|++|+.||.|++|+...          .........  +........+.+++. ++++++
T Consensus        49 l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  115 (355)
T d1nexb2          49 LSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK----------GCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGS  115 (355)
T ss_dssp             EECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTT----------TEEEEEECCCSSCEEEEEEEEETTEE-EEEEEE
T ss_pred             EECCCCCEEEEEEcCCC--EEEEEecccccccccccc----------cccccccccccccccccccccccccc-eeeeec
Confidence            44799999999999854  799999999999999887          222222222  223345556667665 688888


Q ss_pred             CCCcEEEEeCCCCCCCC---------------------------------------------------------ccccee
Q 014433          199 DDAQICLWDINAAPKNK---------------------------------------------------------SLEAMQ  221 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~---------------------------------------------------------~~~~~~  221 (424)
                      .|+.|++||+.......                                                         ..+.+.
T Consensus       116 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~  195 (355)
T d1nexb2         116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY  195 (355)
T ss_dssp             TTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccccee
Confidence            99999999886542210                                                         001122


Q ss_pred             eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014433          222 IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF  301 (424)
Q Consensus       222 ~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iw  301 (424)
                      ...++...+.++.|++.+. .+++++.|+.|++||++++..   +..+.+|...|.+++|++  . +|++|+.||.|++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~---~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iw  268 (355)
T d1nexb2         196 ILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGEL---MYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGW  268 (355)
T ss_dssp             EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCE---EEEECCCSSCCCEEEECS--S-EEEEECTTSEEEEE
T ss_pred             eeeccccccccccccccce-eeecccccceEEeeecccccc---cccccccccccccccccc--c-eeeeeecccccccc
Confidence            3344666788889999887 456899999999999998664   777889999999999975  3 69999999999999


Q ss_pred             ECCCCCCcceEecCCCCCEEEEEE-cCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceE
Q 014433          302 DLRKISTALHTFDSHKEEVFQVGW-NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF  380 (424)
Q Consensus       302 d~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  380 (424)
                      |+++. .  ..+..|...+.++.+ ++++ .+|++| .||.|+|||++++....             ..+.+|...|+++
T Consensus       269 d~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~~~~-------------~~~~~~~~~V~~v  330 (355)
T d1nexb2         269 DANDY-S--RKFSYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGKLVH-------------ANILKDADQIWSV  330 (355)
T ss_dssp             ETTTC-C--EEEEEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCCBCC-------------SCTTTTCSEEEEE
T ss_pred             ccccc-c--eecccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCCEEE-------------EEecCCCCCEEEE
Confidence            99873 2  344556666666654 5555 566555 58999999998864321             2346788899999


Q ss_pred             EeCCCCCcEEEEEeCCCcEEEEec
Q 014433          381 SWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       381 ~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      +|+|+  .++++++.||.++||.+
T Consensus       331 ~~~~~--~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         331 NFKGK--TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETT--EEEEEEESSSCEEEEEE
T ss_pred             EEcCC--eEEEEEECCCcEEEEEE
Confidence            99986  37888999998766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-28  Score=225.99  Aligned_cols=231  Identities=15%  Similarity=0.227  Sum_probs=162.1

Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCC----ceEEEEeCCCcEEEEeCCCCCC
Q 014433          138 PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE----GHLLSGSDDAQICLWDINAAPK  213 (424)
Q Consensus       138 ~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~  213 (424)
                      ..++++++.||.|++|++.....................+...+..++|.+...    .++++++.||.+++|++.....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            347889999999999998753221110000000000112455678888887642    4689999999999999864321


Q ss_pred             C---------Ccc---cceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC---CeeeeeccCCCeeE
Q 014433          214 N---------KSL---EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK---PVQSVVAHQSEVNC  278 (424)
Q Consensus       214 ~---------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~v~~  278 (424)
                      .         ...   ........+...+.+++|+|++  +||+|+.||+|+|||+++++...   ....+.+|..+|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence            1         000   0111122345668999999986  67899999999999998865321   12234578999999


Q ss_pred             EEecCCCCeEEEEEeCCCc---EEEEECCCCCCcceEe-------------cCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          279 LAFNPFNEWILATGSTDKT---VKLFDLRKISTALHTF-------------DSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~---i~iwd~~~~~~~~~~~-------------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      ++|+|++. +|++|+.|++   |++||+++ +..+..+             .+|...|++++|+|+++ +|++++.|++|
T Consensus       237 l~~spdg~-~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v  313 (393)
T d1sq9a_         237 VKFSPQGS-LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKL  313 (393)
T ss_dssp             EEECSSTT-EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEE
T ss_pred             cccccccc-eeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEE
Confidence            99999998 6999998874   99999987 5555444             47999999999999996 89999999999


Q ss_pred             EEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc----eEEeCCCCC
Q 014433          343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS----DFSWNPCED  387 (424)
Q Consensus       343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~  387 (424)
                      +|||+.++              +++.++.+|...|.    .++|+|++.
T Consensus       314 ~vWd~~~g--------------~~~~~l~gH~~~v~~~~~~~~~~~~~~  348 (393)
T d1sq9a_         314 RFWDVKTK--------------ERITTLNMHCDDIEIEEDILAVDEHGD  348 (393)
T ss_dssp             EEEETTTT--------------EEEEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred             EEEECCCC--------------CEEEEECCcCCcccCCccEEEECCCCC
Confidence            99999886              66777788876554    356666655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.2e-25  Score=198.81  Aligned_cols=210  Identities=19%  Similarity=0.338  Sum_probs=157.4

Q ss_pred             CCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe
Q 014433          168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG  247 (424)
Q Consensus       168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  247 (424)
                      .++...+++|.+.|.+ ++++++. +|+||+.||+|+|||+.++      +++..+.+|...|.+++|+++   ++++++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~------~~~~~~~~h~~~V~~v~~~~~---~l~s~s   74 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTG------KCLRTLVGHTGGVWSSQMRDN---IIISGS   74 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTC------CEEEECCCCSSCEEEEEEETT---EEEEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCC------CEEEEEeCCCCCEEEEEeCCC---ccccce
Confidence            5667889999999865 3555676 8999999999999999876      356778899999999999864   677999


Q ss_pred             CCCeEEEEEcCCCCCC----------------------------------------------------------------
Q 014433          248 DDQYLLIWDLRTPSVS----------------------------------------------------------------  263 (424)
Q Consensus       248 ~dg~i~i~d~~~~~~~----------------------------------------------------------------  263 (424)
                      .|+.+++|+.......                                                                
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            9999999987542100                                                                


Q ss_pred             -------------CCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCC
Q 014433          264 -------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE  330 (424)
Q Consensus       264 -------------~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~  330 (424)
                                   ..+..+.+|...+.++.+  ++. .+++|+.||.|++||++. .+++..+..|...+.++++++   
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~---  227 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELKD---  227 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEET---
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecCC---
Confidence                         001112233333343333  455 689999999999999998 688899999999999998876   


Q ss_pred             cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      .+|++++.|+.|++||+......           ..+.....|...+..+.+++  . ++++++.||.|+|||+.++.+
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTGQCL-----------QTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEE-----------EEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEcCCCEEEEEeccccccc-----------ccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECCCCCE
Confidence            37999999999999999875321           11112234556677777764  4 789999999999999988743

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.2e-24  Score=197.98  Aligned_cols=248  Identities=9%  Similarity=0.060  Sum_probs=181.0

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      ++.|...|.+++|+|+++.++.++..+| .|++||...           .....+..|...+.+++|+|++. +|++++.
T Consensus        38 ~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-----------~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~  105 (360)
T d1k32a3          38 KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-----------GKAEKFEENLGNVFAMGVDRNGK-FAVVAND  105 (360)
T ss_dssp             ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-----------CCEEECCCCCCSEEEEEECTTSS-EEEEEET
T ss_pred             EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-----------CcEEEeeCCCceEEeeeeccccc-ccceecc
Confidence            4689999999999999975444555443 799999987           33456778999999999999998 7999999


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE---------eCCCeEEEEEcCCCCCCCCeeeee
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV---------GDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---------~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      ++.+++|++.+..      ....+..|...+.+++|+|++..++.+.         ..++.+++||+.++.    .....
T Consensus       106 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~~~  175 (360)
T d1k32a3         106 RFEIMTVDLETGK------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAAT  175 (360)
T ss_dssp             TSEEEEEETTTCC------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECS
T ss_pred             ccccccccccccc------eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc----eeeec
Confidence            9999999998763      3455667888999999999998665332         235579999998755    34445


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC------cceE--------------------------------
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST------ALHT--------------------------------  312 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------~~~~--------------------------------  312 (424)
                      .+...+..++|+|+|+ .|++++.++.+.+||......      .+..                                
T Consensus       176 ~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (360)
T d1k32a3         176 TENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK  254 (360)
T ss_dssp             CSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG
T ss_pred             ccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccccc
Confidence            6778889999999998 588999999999998653210      0000                                


Q ss_pred             ----ecCCCCCEEEEEEcCCC----------C--cEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCC
Q 014433          313 ----FDSHKEEVFQVGWNPKN----------E--TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK  376 (424)
Q Consensus       313 ----~~~h~~~v~~~~~sp~~----------~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  376 (424)
                          +....+....+...+++          +  .++++++.++.|++||+....               +..   |...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~---~~~~  316 (360)
T d1k32a3         255 RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---------------VTE---VKNN  316 (360)
T ss_dssp             GCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---------------EEE---EEEE
T ss_pred             ceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe---------------EEE---ecCC
Confidence                01111222333333322          1  134556678889999987632               222   2345


Q ss_pred             cceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          377 ISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       377 v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                      |.+++|+|||+ .|++++.||.|++|++.++.-+
T Consensus       317 v~~~~~SpDG~-~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         317 LTDLRLSADRK-TVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEEEEECTTSC-EEEEEETTSCEEEEESSCTTSC
T ss_pred             cCEEEECCCCC-EEEEEECCCeEEEEECCCCCcc
Confidence            89999999999 5889999999999999887544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=7e-22  Score=174.80  Aligned_cols=255  Identities=11%  Similarity=0.083  Sum_probs=194.3

Q ss_pred             EEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEE
Q 014433          117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       117 ~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  196 (424)
                      ++++.+.....+..++|+|+++.++++++.++.|++||+.+          ......+..+. .+..++|++++..++++
T Consensus        23 ~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          23 KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT----------NNVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT----------TEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC----------Cceeeeeeccc-ccccccccccccccccc
Confidence            45667777788899999999987778888899999999987          44556666554 46899999999866777


Q ss_pred             EeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCe
Q 014433          197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV  276 (424)
Q Consensus       197 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  276 (424)
                      +..++.+.+|+..++.      ....+. +.....++.|+|++..+++++..++.+.+|+..+...   +..+. +...+
T Consensus        92 ~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~  160 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNT------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV---INTVS-VGRSP  160 (301)
T ss_dssp             ETTTTEEEEEETTTTE------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEE-CCSSE
T ss_pred             ccccceeeecccccce------eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce---eeecc-cCCCc
Confidence            7888999999997652      233333 4556788999999998888888899999999988653   33333 45568


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEE--CCCeEEEeeCCCCCccc
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRIDEEQ  354 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~~~~  354 (424)
                      .+++++|++..+++++...+.+.+|+... ......... ...+..++|++++..+++++.  .++.|.+||+.+.    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~----  234 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----  234 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----
T ss_pred             eEEEeeccccceeeecccccccccccccc-eeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCC----
Confidence            89999999987665555567788888775 444444443 466788999999976554443  3468999999875    


Q ss_pred             CCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCC
Q 014433          355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~  410 (424)
                                +++..+..+ ..+.+++|+|+|++++++++.|+.|++||++++.+.
T Consensus       235 ----------~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         235 ----------KITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             ----------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ----------eEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence                      444444433 457999999999977788889999999999988654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.8e-24  Score=189.66  Aligned_cols=206  Identities=17%  Similarity=0.242  Sum_probs=150.0

Q ss_pred             CCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC
Q 014433          169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD  248 (424)
Q Consensus       169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  248 (424)
                      +++.++.+|..+|++|+|+|     |++|+.||+|++||+.+.           ...|...|.++++++..  .+++++.
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----------~~~h~~~V~~~~~~~~~--~~~s~s~   65 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----------HQDHSNLIVSLDNSKAQ--EYSSISW   65 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----------ECCCCSCEEEEECCSTT--CCEEEET
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----------CCCCCCCEEEEEecCCC--eEEEEee
Confidence            56788999999999999986     899999999999998643           24688999999998765  3568999


Q ss_pred             CCeEEEEEcCCCCCCCCe--------------------eeeeccC--------CCeeEEEecCCCCeEEEEEeCC-CcEE
Q 014433          249 DQYLLIWDLRTPSVSKPV--------------------QSVVAHQ--------SEVNCLAFNPFNEWILATGSTD-KTVK  299 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~--------------------~~~~~~~--------~~v~~v~~~~~~~~~l~tg~~d-g~i~  299 (424)
                      |+++++|++.........                    ..+....        ......++++++.. +++++.+ +.++
T Consensus        66 D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~  144 (287)
T d1pgua2          66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQ  144 (287)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE-EEEEETTTSCEE
T ss_pred             ccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcc-eeeeccccceee
Confidence            999999987643211000                    0000000        11123345566664 5566655 5799


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      +|++............|...+++++|+|++. +|++|+.||.|++||+....             .....+.+|...|.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~-------------~~~~~~~~h~~~v~~  210 (287)
T d1pgua2         145 VFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSRE-------------VKTSRWAFRTSKINA  210 (287)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-------------EEECCSCCCSSCEEE
T ss_pred             eeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccc-------------cccccccccccccce
Confidence            9999863333333345788999999999996 79999999999999998743             122234678999999


Q ss_pred             EEeCCCCC---------cEEEEEeCCCcEEEEecCCc
Q 014433          380 FSWNPCED---------WVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       380 ~~~~~~~~---------~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++|+|.+.         .+|++|+.|+.|+||++...
T Consensus       211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             eeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            99988542         26999999999999999763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-22  Score=173.85  Aligned_cols=202  Identities=21%  Similarity=0.359  Sum_probs=157.0

Q ss_pred             cEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCC
Q 014433          171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ  250 (424)
Q Consensus       171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  250 (424)
                      +.....|...|+|++|  ++. +|++|+.||+|+|||++++      +++..+.+|.+.|++++|+  + .+|++|+.||
T Consensus         8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~------~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~   75 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTL------ECKRILTGHTGSVLCLQYD--E-RVIITGSSDS   75 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSC------CEEEEECCCSSCEEEEECC--S-SEEEEEETTS
T ss_pred             EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCC------cEEEEEecCCCCEeeeecc--c-ceeecccccc
Confidence            3445568888998876  455 8999999999999999776      4567788999999999884  3 3678999999


Q ss_pred             eEEEEEcCCCCCC----------------------------------------CCeeeeeccCCCeeEEEecCCCCeEEE
Q 014433          251 YLLIWDLRTPSVS----------------------------------------KPVQSVVAHQSEVNCLAFNPFNEWILA  290 (424)
Q Consensus       251 ~i~i~d~~~~~~~----------------------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~  290 (424)
                      .|++|+++.+...                                        .....+..|...+.++.+.+  . .++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~  152 (293)
T d1p22a2          76 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIV  152 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--T-EEE
T ss_pred             cccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--c-ccc
Confidence            9999998764311                                        00112234555666666654  2 577


Q ss_pred             EEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE
Q 014433          291 TGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH  370 (424)
Q Consensus       291 tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  370 (424)
                      +++.|+.|++||+++ .+++..+.++...+..+.+++   ..+++++.||.|++||++..              ..+...
T Consensus       153 ~~s~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~--------------~~~~~~  214 (293)
T d1p22a2         153 SASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECG--------------ACLRVL  214 (293)
T ss_dssp             EEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTC--------------CEEEEE
T ss_pred             cccCCCceeeecCCC-CcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccc--------------eeeeee
Confidence            889999999999998 678889999999999988875   36899999999999999874              456677


Q ss_pred             cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCcc
Q 014433          371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       371 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      .+|...+..+  .+++. .|++++.||.|++|++....
T Consensus       215 ~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         215 EGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             CCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHHHHT
T ss_pred             cccceeeeec--cccce-EEEEEcCCCEEEEEECCCCc
Confidence            7888777654  45566 79999999999999986653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.1e-22  Score=187.94  Aligned_cols=268  Identities=11%  Similarity=0.075  Sum_probs=180.8

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCCCCceEE
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      +..+.+...+..++|+|+|+ ++++++.||.|++||+.+        ........+   .+|...+.+++|+|+|+.+++
T Consensus        55 ~~~l~~g~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t--------~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          55 VKVIDTGYAVHISRMSASGR-YLLVIGRDARIDMIDLWA--------KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             EEEEECCSSEEEEEECTTSC-EEEEEETTSEEEEEETTS--------SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EEEEeCCCCeeEEEECCCCC-EEEEEeCCCCEEEEEccC--------CceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            45565566799999999997 678889999999999987        222222222   246666788899999985556


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecC-----------CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVH-----------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK  264 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~  264 (424)
                      ++..++.+.+||......      ......|           ......+..++++..++.+....+.+.+++......  
T Consensus       126 ~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~--  197 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEP------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--  197 (426)
T ss_dssp             EEEESSEEEEEETTTCCE------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS--
T ss_pred             eecCCCeEEEEcCCccce------eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc--
Confidence            677899999999987642      2222323           334455566666665555555566666666655432  


Q ss_pred             CeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-------------------------------------
Q 014433          265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-------------------------------------  307 (424)
Q Consensus       265 ~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~-------------------------------------  307 (424)
                      .......+...+..++|+|++++++++...+..+.+++..+..                                     
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  277 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS  277 (426)
T ss_dssp             CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCE
T ss_pred             eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCce
Confidence            2223345677889999999998766665556666666654311                                     


Q ss_pred             ----------------CcceEecCCCCCEEEEEEcCCCCcEEE-------EEECCCeEEEeeCCCCCcccCCCCcCCCCC
Q 014433          308 ----------------TALHTFDSHKEEVFQVGWNPKNETILA-------SCCLGRRLMVWDLSRIDEEQTPEDAEDGPP  364 (424)
Q Consensus       308 ----------------~~~~~~~~h~~~v~~~~~sp~~~~~l~-------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  364 (424)
                                      +....+.+|...+..++|+|++.. |+       +++.|++|+|||+.++........     .
T Consensus       278 v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~-----~  351 (426)
T d1hzua2         278 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP-----I  351 (426)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC-----H
T ss_pred             EEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce-EEEeecCCCCcccCCEEEEEECCCCCcCeEEec-----c
Confidence                            223456678888999999999974 55       345578999999988653221100     0


Q ss_pred             eeeEEEcCCCCCcceEEeCCCCCcEEEEE----eCCCcEEEEecCCccC
Q 014433          365 ELLFIHGGHTSKISDFSWNPCEDWVISSV----AEDNILQIWQMAENIY  409 (424)
Q Consensus       365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~dg~i~vw~~~~~~~  409 (424)
                      .....+..|...|.+++|+|||+++++++    +.+|.|+|||..+..+
T Consensus       352 ~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         352 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            00011234566799999999999776765    3688899999998864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=6.9e-22  Score=184.45  Aligned_cols=263  Identities=12%  Similarity=-0.008  Sum_probs=186.0

Q ss_pred             EEecCCCCc-EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC
Q 014433          131 ARYMPQNPF-LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (424)
Q Consensus       131 ~~~~p~~~~-~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  209 (424)
                      +.+.++... ++++.+.||+|+|||+.+          .+.+.++..|. .+.+++|+|+|+ +|++++.|++|++||+.
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t----------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~   91 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDS----------KKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMIDLW   91 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTT----------CSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEETT
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCC----------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEcc
Confidence            335554433 457788899999999988          56677787664 689999999998 79999999999999998


Q ss_pred             CCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc-----------CCCeeE
Q 014433          210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----------QSEVNC  278 (424)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------~~~v~~  278 (424)
                      +++.... ..+....+|...+.+++|+|+++.+++++..++.+++||..+...   +.....+           ......
T Consensus        92 t~~~~~~-~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          92 AKEPTKV-AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP---KQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             SSSCEEE-EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE---EEEEECCEECSSSCCEESCCCEEE
T ss_pred             CCceeEE-EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce---eEEeeccCCCccceeecCCCceeE
Confidence            8754211 122333456777888899999998888888999999999998653   3333333           334455


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED  358 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  358 (424)
                      +.+++++..++.+....+.+.+++.............+...+..++|+|+++.++++...+..+.+++............
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            66666666555555555667677666543444445567888999999999987666666778899998876543211000


Q ss_pred             c----------------------------------------CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEE------E
Q 014433          359 A----------------------------------------EDGPPELLFIHGGHTSKISDFSWNPCEDWVIS------S  392 (424)
Q Consensus       359 ~----------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~------s  392 (424)
                      .                                        .....+....+.+|...+..++|+|+++++.+      +
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            0                                        00112456678899999999999999995433      3


Q ss_pred             EeCCCcEEEEecCCccC
Q 014433          393 VAEDNILQIWQMAENIY  409 (424)
Q Consensus       393 ~~~dg~i~vw~~~~~~~  409 (424)
                      ++.|++|+|||+.++..
T Consensus       328 ~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         328 ARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             HHHHTCEEEEETTCTTS
T ss_pred             cccCCEEEEEECCCCCc
Confidence            45688999999987643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.4e-20  Score=166.33  Aligned_cols=272  Identities=8%  Similarity=0.118  Sum_probs=189.9

Q ss_pred             CcEEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCC-CcEEEecCCCceeEEEecCCCCc
Q 014433          114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACS-PDLRLRGHSTEGYGLSWSKFKEG  192 (424)
Q Consensus       114 ~~~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~  192 (424)
                      +.+++++.+.|.+.|..|+|+|+|+.+++++..++.|++|++...        ... .......+...+..++|+|+++ 
T Consensus        25 ~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--------~~~~~~~~~~~~~~~p~~l~~spDg~-   95 (333)
T d1ri6a_          25 GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--------DGALTFAAESALPGSLTHISTDHQGQ-   95 (333)
T ss_dssp             SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--------TCCEEEEEEEECSSCCSEEEECTTSS-
T ss_pred             CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--------CCcEEEeeecccCCCceEEEEcCCCC-
Confidence            457788889999999999999999877677777999999999762        111 1112223455678899999998 


Q ss_pred             eEEEEe-CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee---e
Q 014433          193 HLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ---S  268 (424)
Q Consensus       193 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~---~  268 (424)
                      +|++++ .++.|.+|+......    ........+...+.++.++|+++.+++....+..+.+|+...........   .
T Consensus        96 ~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  171 (333)
T d1ri6a_          96 FVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV  171 (333)
T ss_dssp             EEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEeecccCCCceeeeccccccc----eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee
Confidence            566665 577899998865422    12223344667788999999999887777677889999987754311111   1


Q ss_pred             eeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceE---ec------CCCCCEEEEEEcCCCCcEEEEEECC
Q 014433          269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT---FD------SHKEEVFQVGWNPKNETILASCCLG  339 (424)
Q Consensus       269 ~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~---~~------~h~~~v~~~~~sp~~~~~l~s~~~d  339 (424)
                      ..........++|++++..++.+....+...+++.......+..   ..      ........++++++++.+++++..+
T Consensus       172 ~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~  251 (333)
T d1ri6a_         172 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  251 (333)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC
Confidence            12234567889999999876667777788889987653322211   11      1234677899999998777778888


Q ss_pred             CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec--CCccC
Q 014433          340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM--AENIY  409 (424)
Q Consensus       340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~--~~~~~  409 (424)
                      +.+.+|++......           ..+.....+...+.+++|+|+|+++++++..++.|++|++  .++.+
T Consensus       252 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         252 SLITVFSVSEDGSV-----------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TEEEEEEECTTSCC-----------EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CeEEEEEEcCCCCE-----------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99999998764321           2222223344567899999999987777677899999965  44544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=3.3e-22  Score=181.59  Aligned_cols=192  Identities=10%  Similarity=0.105  Sum_probs=150.1

Q ss_pred             eEEEecC-CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-CC-cEEE
Q 014433          129 NRARYMP-QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DA-QICL  205 (424)
Q Consensus       129 ~~~~~~p-~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg-~i~i  205 (424)
                      ..-.||| +|+ ++|+++ .|.|++|++..           .....+ +|...|.+++|+|+++ +|++++. +| .|++
T Consensus         6 ~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~-----------~~~~~~-~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVS-RGQAFIQDVSG-----------TYVLKV-PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGI   70 (360)
T ss_dssp             GEEEEEECGGG-CEEEEE-TTEEEEECTTS-----------SBEEEC-SCCSCEEEEEECSSSE-EEEEEEETTEEEEEE
T ss_pred             hcccccCCCCC-EEEEEE-CCeEEEEECCC-----------CcEEEc-cCCCCEEEEEECCCCC-EEEEEEcCCCCEEEE
Confidence            3467999 776 678765 68999999876           223333 6999999999999998 5665544 43 7999


Q ss_pred             EeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       206 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      ||++++.       ...+..|...|.+++|+|++.. +++++.++.+++|++.++..   ...+..|...+.+++|+|+|
T Consensus        71 ~d~~~~~-------~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          71 YDYRTGK-------AEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKP---TVIERSREAMITDFTISDNS  139 (360)
T ss_dssp             EETTTCC-------EEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEEECTTS
T ss_pred             EECCCCc-------EEEeeCCCceEEeeeecccccc-cceeccccccccccccccce---eeeeecccccccchhhccce
Confidence            9998763       3445678999999999999974 56899999999999988664   56667788899999999999


Q ss_pred             CeEEEEEe----------CCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          286 EWILATGS----------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       286 ~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      ++ |+.+.          .++.+++||+.. + ....+..|...+..++|+|+|+ .|++++.++.+.+|+....
T Consensus       140 ~~-la~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         140 RF-IAYGFPLKHGETDGYVMQAIHVYDMEG-R-KIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             CE-EEEEEEECSSTTCSCCEEEEEEEETTT-T-EEEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSS
T ss_pred             ee-eeeeccccccceeeccccceeeecccc-C-ceeeecccccccccccccCCCC-EEEEEeCCCceEccccccc
Confidence            95 55332          345799999987 3 3445556778899999999996 6889999999999987554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.4e-20  Score=169.78  Aligned_cols=278  Identities=8%  Similarity=-0.040  Sum_probs=182.7

Q ss_pred             EEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEE---ecCCCceeEEEecCCCCceEE
Q 014433          119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL---RGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       119 ~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      +..+.....+..++|+|+|+ ++++++.||.|++||+.+        ........+   .+|.+.+.+..|+|+|+.+++
T Consensus        55 ~~~~~~g~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t--------~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          55 KTVLDTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWM--------KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             EEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTS--------SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             EEEEeCCCCeeEEEECCCCC-EEEEEcCCCCEEEEEeeC--------CCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            44454445799999999997 678889999999999987        222222222   245566777788999986568


Q ss_pred             EEeCCCcEEEEeCCCCCCCCccccee-----eeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQ-----IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV  270 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~  270 (424)
                      +++.++.|++||..+++....+....     ....+......+.++|++..++++...++.|.+||..+.+.. .+..+ 
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~-~~~~i-  203 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-KTTEI-  203 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-EEEEE-
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc-eEEEE-
Confidence            88999999999998774322111000     011245567788999999988888889999999999875531 12222 


Q ss_pred             ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-------------------------------------
Q 014433          271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------------------------------------  313 (424)
Q Consensus       271 ~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------------------------------------  313 (424)
                      .+...+..++|+|+++++++++..+..+.++|.+. .+.+..+                                     
T Consensus       204 ~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~  282 (432)
T d1qksa2         204 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI  282 (432)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             cccCccccceECCCCCEEEEeccccceEEEeeccc-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEec
Confidence            34567899999999997777766777899999875 2221111                                     


Q ss_pred             -------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccC-------CCC---cCCCCCeeeEE-------
Q 014433          314 -------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT-------PED---AEDGPPELLFI-------  369 (424)
Q Consensus       314 -------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~---~~~~~~~~~~~-------  369 (424)
                             ..|...|....++|++. .+++++.++..++|..........       ...   ........+..       
T Consensus       283 ~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~  361 (432)
T d1qksa2         283 GTDPEGHPDNAWKILDSFPALGGG-SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA  361 (432)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCSC-CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred             ccccccccccccEEEEEEEcCCCC-eEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccc
Confidence                   01223466667777764 466777777777776543321100       000   00000011111       


Q ss_pred             -EcCCCCCcceEEeCCCCCcEEEEEe----CCCcEEEEecCCccC
Q 014433          370 -HGGHTSKISDFSWNPCEDWVISSVA----EDNILQIWQMAENIY  409 (424)
Q Consensus       370 -~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~vw~~~~~~~  409 (424)
                       +..|...|.+++|+|+|+++++|..    .+|.|+|||-.+..+
T Consensus       362 ~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         362 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence             1245667899999999997766653    478899999999865

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.2e-19  Score=159.90  Aligned_cols=233  Identities=10%  Similarity=-0.042  Sum_probs=160.9

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS  216 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  216 (424)
                      .++++++.|++|+|||+.+          .+.+..+..  +...+.+++|+|+|+.++++++.++.|.+||+.+++....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s----------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~   71 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK----------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR   71 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             eEEEEEcCCCEEEEEECCC----------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            4799999999999999987          344555543  4456789999999985456778899999999988743221


Q ss_pred             ccceeeeecCCccEeeEEEecCCCcEEEEEe-----------CCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCC
Q 014433          217 LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN  285 (424)
Q Consensus       217 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  285 (424)
                      +.. .....+...+..++|+|++..++++..           .+..+.+||..+...   ...+. +...+..++|+|++
T Consensus        72 ~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~~~s~dg  146 (337)
T d1pbyb_          72 IDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE-APRQITMLAWARDG  146 (337)
T ss_dssp             EEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE-CCSSCCCEEECTTS
T ss_pred             Eec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE---EEecc-ccCCceEEEEcCCC
Confidence            111 001112334568999999987765443           467899999988653   33333 45678899999999


Q ss_pred             CeEEEEEeCCCcEEEEECCCCCCcc-------------------------------------------------------
Q 014433          286 EWILATGSTDKTVKLFDLRKISTAL-------------------------------------------------------  310 (424)
Q Consensus       286 ~~~l~tg~~dg~i~iwd~~~~~~~~-------------------------------------------------------  310 (424)
                      .+ +++++  +.+.+||.... ...                                                       
T Consensus       147 ~~-l~~~~--~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (337)
T d1pbyb_         147 SK-LYGLG--RDLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             SC-EEEES--SSEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CE-EEEEc--CCcceeeeecC-cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence            96 55654  44677876542 110                                                       


Q ss_pred             -----------eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          311 -----------HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       311 -----------~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                                 ..+..+...+..+.++|++. +++++  ++.|++||+.+.              .++.... +...+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~~--------------~~~~~~~-~~~~~~~  284 (337)
T d1pbyb_         223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN--------------ASIKRVP-LPHSYYS  284 (337)
T ss_dssp             EEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT--------------EEEEEEE-CSSCCCE
T ss_pred             EEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECCCC--------------cEEEEEc-CCCCEEE
Confidence                       01122344556677777775 44443  578999999875              3344432 4556899


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ++|+|+|+ .|++++.|+.|+|||..+...
T Consensus       285 ~~~s~dG~-~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         285 VNVSTDGS-TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEECTTSC-EEEEESBSSEEEEEETTTCCE
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEECCCCcE
Confidence            99999999 577889999999999988643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.2e-18  Score=162.20  Aligned_cols=196  Identities=11%  Similarity=0.031  Sum_probs=151.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      ++++.+.+|+|.|||..+          .+.+..+..+ ..+..++|+|+|+ +|++++.||.|++||+.+.+... ...
T Consensus        34 ~~v~~~d~g~v~v~D~~t----------~~v~~~~~~g-~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~-~~~  100 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGST----------YEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT-VAE  100 (432)
T ss_dssp             EEEEETTTTEEEEEETTT----------CCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCE-EEE
T ss_pred             EEEEEcCCCEEEEEECCC----------CcEEEEEeCC-CCeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceE-EEE
Confidence            468889999999999988          5667777766 4699999999998 79999999999999998764321 122


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeee-----------ccCCCeeEEEecCCCCeE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV-----------AHQSEVNCLAFNPFNEWI  288 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~~v~~v~~~~~~~~~  288 (424)
                      +.....|.+.+.+..|+|+|++++++++.++.|++||..+++.   +..+.           .+......+.++|++..+
T Consensus       101 i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc---eeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence            3334456677778888999998889999999999999998764   33222           244567788999999987


Q ss_pred             EEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          289 LATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       289 l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      +++...++.|.+||.............+...+..++|+|+++.+++++..++.+.++|.....
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            888888999999998873322222223466789999999998666666677889999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=5.4e-18  Score=149.38  Aligned_cols=232  Identities=13%  Similarity=0.092  Sum_probs=174.0

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE  218 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  218 (424)
                      ++.++++.+++|.|||+.+          .+...++. ....+.+++|+|+|+.++++++.++.|++||+.++.      
T Consensus         3 ~~yV~~~~~~~v~v~D~~t----------~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~------   65 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTS----------NKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN------   65 (301)
T ss_dssp             EEEEEETTTTEEEEEETTT----------TEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE------
T ss_pred             EEEEEECCCCEEEEEECCC----------CeEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc------
Confidence            3566788899999999987          34445554 345678999999998555677889999999998763      


Q ss_pred             ceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014433          219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV  298 (424)
Q Consensus       219 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i  298 (424)
                      .+..+..+. .+..++|++++..+++++..++.+.+|+..++..   ...+. +.....+++|+|++..+++++..++.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~  140 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV---AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTV  140 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeeccccccee---eeecc-ccccceEEEeecCCCeeeeeeccccce
Confidence            344455444 5688999999998888888999999999988653   44433 456788999999999877888889999


Q ss_pred             EEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcc
Q 014433          299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS  378 (424)
Q Consensus       299 ~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  378 (424)
                      .+|+..+ ...+..+.. ...+..++++|++..+++++..++.+.+|+....              ........+ ..+.
T Consensus       141 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~~  203 (301)
T d1l0qa2         141 SVINTVT-KAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--------------SVIDTVKVE-AAPS  203 (301)
T ss_dssp             EEEETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--------------EEEEEEECS-SEEE
T ss_pred             eeeeccc-cceeeeccc-CCCceEEEeeccccceeeecccccccccccccce--------------eeeeccccc-CCcc
Confidence            9999988 566666654 4568899999999765555555677888887653              333333333 4477


Q ss_pred             eEEeCCCCCcEEEEEe--CCCcEEEEecCCccC
Q 014433          379 DFSWNPCEDWVISSVA--EDNILQIWQMAENIY  409 (424)
Q Consensus       379 ~~~~~~~~~~~l~s~~--~dg~i~vw~~~~~~~  409 (424)
                      .++|++++..+++++.  .++.|++||+.++.+
T Consensus       204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             eeeccccccccccccccceeeeeeeeecCCCeE
Confidence            8999999996555543  357899999988754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=4.9e-19  Score=159.27  Aligned_cols=248  Identities=11%  Similarity=0.007  Sum_probs=161.0

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  209 (424)
                      ++|+++++ ++++++.++.|.|||+.+          .+...++. .|...+.+++|+|++..++++++.++.|.+||+.
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t----------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVAS----------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTT----------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCC----------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            57888775 899999999999999988          45555565 4566788999999998556777789999999998


Q ss_pred             CCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE-----------eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeE
Q 014433          210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV-----------GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      +++....+........+...+..++|+|++..++++.           ..++.+.+||..++.....+.... ....+..
T Consensus        71 t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~  149 (346)
T d1jmxb_          71 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL  149 (346)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred             cCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEE
Confidence            7643222111111111223467899999998776553           257889999988755433322211 1222333


Q ss_pred             EEecCCCCeEEEE----------------------------------------------------------------EeC
Q 014433          279 LAFNPFNEWILAT----------------------------------------------------------------GST  294 (424)
Q Consensus       279 v~~~~~~~~~l~t----------------------------------------------------------------g~~  294 (424)
                      +.+++++. ++++                                                                +..
T Consensus       150 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (346)
T d1jmxb_         150 MRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  228 (346)
T ss_dssp             EEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             EEecCCCE-EEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence            33333332 2221                                                                111


Q ss_pred             CCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCC
Q 014433          295 DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT  374 (424)
Q Consensus       295 dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~  374 (424)
                      ++.+.+||+.+..........|...+..+.+++++.. ++... ++.|.+||+.++              +++.... +.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~--------------~~~~~~~-~~  291 (346)
T d1jmxb_         229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQR--------------KLIKAAN-LD  291 (346)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTT--------------EEEEEEE-CS
T ss_pred             CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCC--------------cEEEEEc-CC
Confidence            2234444444422223334456677888899988875 44444 457999999875              3344333 33


Q ss_pred             CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       375 ~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      ..+.+++|+|||+ .|++++.|+.|+|||+.+...
T Consensus       292 ~~~~~va~s~DG~-~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         292 HTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             SCCCEEEECSSSS-CEEEESBSSEEEEEETTTTEE
T ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEECccCCE
Confidence            4689999999999 577888999999999998754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.6e-16  Score=140.59  Aligned_cols=246  Identities=10%  Similarity=0.095  Sum_probs=169.3

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA  219 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  219 (424)
                      ++++++.+++|+||++...        ..........|.+.+.+|+|+|+|+.+++++..|+.|++|++.......  ..
T Consensus         6 v~v~~~~~~~I~v~~~~~~--------~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~--~~   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHE--------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--TF   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTT--------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE--EE
T ss_pred             EEEECCCCCcEEEEEEcCC--------CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE--EE
Confidence            5678889999999999761        1112233446889999999999998544566668999999997653321  11


Q ss_pred             eeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014433          220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK  299 (424)
Q Consensus       220 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~  299 (424)
                       .....+...+..++|+|+++.++++...++.+.+|+...... ........+...+.++.++|++.++++....+..|.
T Consensus        76 -~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~  153 (333)
T d1ri6a_          76 -AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  153 (333)
T ss_dssp             -EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             -eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc-eecccccCCCccceEEEeeecceeeeccccccceee
Confidence             112234556788999999998876666788999999876542 122333456677899999999997666666677899


Q ss_pred             EEECCCCCCcceE-----ecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc---
Q 014433          300 LFDLRKISTALHT-----FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG---  371 (424)
Q Consensus       300 iwd~~~~~~~~~~-----~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  371 (424)
                      +|+..........     ..........++|++++..++.+....+...+|+........          .......   
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~  223 (333)
T d1ri6a_         154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----------ECVQTLDMMP  223 (333)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC----------EEEEEEECSC
T ss_pred             EEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce----------eeeeeeeeee
Confidence            9998864332211     123445678999999997655666677788888876532211          1111111   


Q ss_pred             ---CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          372 ---GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       372 ---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                         ........++++++++++++++..++.+.+|++...
T Consensus       224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence               123346678899999988888888899999988654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=1.6e-15  Score=137.84  Aligned_cols=259  Identities=9%  Similarity=-0.080  Sum_probs=165.7

Q ss_pred             eccCCceeEEEecCCCCcEEEEE----eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEE
Q 014433          122 INHDGEVNRARYMPQNPFLIATK----TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  197 (424)
                      -.+.+++..++++|+++.++++.    +..+.|.+||..+          .+....+..+...  .++|+|+|. +|+++
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t----------g~~~~~~~~~~~~--~~a~SpDG~-~l~va   83 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS----------GSILGHVNGGFLP--NPVAAHSGS-EFALA   83 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCC----------CCEEEEEeCCCCc--cEEEcCCCC-EEEEE
Confidence            35788999999999998766542    2346799999876          4555666655443  799999998 56665


Q ss_pred             e----------CCCcEEEEeCCCCCCCCcc-----------------------cc--ee---------e-------eecC
Q 014433          198 S----------DDAQICLWDINAAPKNKSL-----------------------EA--MQ---------I-------FKVH  226 (424)
Q Consensus       198 ~----------~dg~i~iwd~~~~~~~~~~-----------------------~~--~~---------~-------~~~~  226 (424)
                      +          .++.|.+||+.+++....+                       +.  +.         .       ...+
T Consensus        84 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (373)
T d2madh_          84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL  163 (373)
T ss_pred             eecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE
Confidence            3          4678999999876532111                       00  00         0       0112


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee---eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV---VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL  303 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~  303 (424)
                      .....++.++|++..++++.+.|+.+.+||.............   .........+.+.+++.  ++..+.++.+.+|+.
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~  241 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR--IVWPVYSGKILQADI  241 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce--EEEecCCceEEEEEc
Confidence            2334567889999888889999999999999876542111111   11112234455666553  556667889999998


Q ss_pred             CCCCC-cceEecCCC----------CCEEEEEEcCCCCc---------EEEEEECCCeEEEeeCCCCCcccCCCCcCCCC
Q 014433          304 RKIST-ALHTFDSHK----------EEVFQVGWNPKNET---------ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP  363 (424)
Q Consensus       304 ~~~~~-~~~~~~~h~----------~~v~~~~~sp~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  363 (424)
                      ..... .+.....+.          .....+++++++..         .+++...++.+.+||..++.            
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~------------  309 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ------------  309 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc------------
Confidence            76321 111111111          22344555555542         23455667788999987753            


Q ss_pred             CeeeEEEcCCCCCcceEEeCCCCCcE-EEEEeCCCcEEEEecCCccCC
Q 014433          364 PELLFIHGGHTSKISDFSWNPCEDWV-ISSVAEDNILQIWQMAENIYH  410 (424)
Q Consensus       364 ~~~~~~~~~h~~~v~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~~  410 (424)
                        .+..+ .+...+..++|+|+|+.+ +++++.|+.|+|||+.++...
T Consensus       310 --~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         310 --TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             --EEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence              23333 244568999999999864 568889999999999988653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=3.7e-15  Score=132.85  Aligned_cols=201  Identities=14%  Similarity=0.145  Sum_probs=142.2

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceeEEEecCCCCceEEEEe
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~  198 (424)
                      +...+..++|+|+|+.++++++.++.|.+||+.+          .+....+..+.     ..+..++|+|++. +++++.
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t----------~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~  100 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT----------GETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYE  100 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT----------CCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEEEecCCCcccccceeeEEEcCCCc-EEEEee
Confidence            4456889999999987778888899999999987          34445555443     2356899999988 566554


Q ss_pred             ------------CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCC--
Q 014433          199 ------------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK--  264 (424)
Q Consensus       199 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~--  264 (424)
                                  .++.+.+||..+..      ....+. +...+..++|+|++..++ +++  +.+.+||..++....  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_         101 SPVRLELTHFEVQPTRVALYDAETLS------RRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTE------EEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEE
T ss_pred             cCCcceeeeccccccceeeccccCCe------EEEecc-ccCCceEEEEcCCCCEEE-EEc--CCcceeeeecCcEEEEe
Confidence                        46778889987652      233333 456688999999998776 444  446778876532100  


Q ss_pred             -------------------------------------------------------------CeeeeeccCCCeeEEEecC
Q 014433          265 -------------------------------------------------------------PVQSVVAHQSEVNCLAFNP  283 (424)
Q Consensus       265 -------------------------------------------------------------~~~~~~~~~~~v~~v~~~~  283 (424)
                                                                                   ....+..+...+.+++++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (337)
T d1pbyb_         171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             ecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc
Confidence                                                                         0001122344566677778


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       284 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ++.. ++.+  ++.|++||+.+ .+.+..+. +...+.+++|+|+|+ .|++++.|+.|+|||..+.+
T Consensus       251 ~~~~-~~~~--~~~i~v~d~~~-~~~~~~~~-~~~~~~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         251 AKTR-AFGA--YNVLESFDLEK-NASIKRVP-LPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             TSSE-EEEE--ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCC
T ss_pred             cceE-EEEc--cccEEEEECCC-CcEEEEEc-CCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCc
Confidence            7763 4444  58999999998 66666665 467889999999997 68889999999999998864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=4.3e-14  Score=126.27  Aligned_cols=212  Identities=12%  Similarity=0.076  Sum_probs=133.4

Q ss_pred             EEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------CceeEEEecCCCCce
Q 014433          120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------TEGYGLSWSKFKEGH  193 (424)
Q Consensus       120 ~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~  193 (424)
                      ..+.|...+.+++|+|+++.+++++..++.|++||+.+          .+....+....      ..+..++|+|+|. +
T Consensus        34 ~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t----------~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~  102 (346)
T d1jmxb_          34 CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT----------CKNTFHANLSSVPGEVGRSMYSFAISPDGK-E  102 (346)
T ss_dssp             EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT----------TEEEEEEESCCSTTEEEECSSCEEECTTSS-E
T ss_pred             EEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc----------CeeeeeecccccccccCCceEEEEEecCCC-E
Confidence            34567778899999999987778888899999999987          22233332211      2356788999887 4


Q ss_pred             EEEEe------------CCCcEEEEeCCCCCCCCcccc-----------------------------------eeeeecC
Q 014433          194 LLSGS------------DDAQICLWDINAAPKNKSLEA-----------------------------------MQIFKVH  226 (424)
Q Consensus       194 l~s~~------------~dg~i~iwd~~~~~~~~~~~~-----------------------------------~~~~~~~  226 (424)
                      +++++            .++.+.+|+..++.....+..                                   +..+. .
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  181 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP-L  181 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEEC-S
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEe-c
Confidence            55443            467788888765432211100                                   00000 0


Q ss_pred             CccEeeEEEecCCCcEEE-------------------------EEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEe
Q 014433          227 EGVVEDVAWHLRHEYLFG-------------------------SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF  281 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~-------------------------s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~  281 (424)
                      ......+.++|++..+++                         ++..++.+.+||+.++..  .......+...+.++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  259 (346)
T d1jmxb_         182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT--HTQEFADLTELYFTGLR  259 (346)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE--EEEEEEECSSCEEEEEE
T ss_pred             CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce--EEEEeecccceeEEEEE
Confidence            011122223333322211                         122233455566655442  12233456778888999


Q ss_pred             cCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       282 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      ++++.+ ++.+. ++.|.+||+.+ ++.+..+. +...+.+++|+|+|+ .|++++.|+.|+|||+.+.
T Consensus       260 ~~~~~~-~~~~~-~~~v~v~d~~~-~~~~~~~~-~~~~~~~va~s~DG~-~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         260 SPKDPN-QIYGV-LNRLAKYDLKQ-RKLIKAAN-LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             CSSCTT-EEEEE-ESEEEEEETTT-TEEEEEEE-CSSCCCEEEECSSSS-CEEEESBSSEEEEEETTTT
T ss_pred             eCCCCE-EEEec-CCeEEEEECCC-CcEEEEEc-CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECccC
Confidence            998886 44444 46799999988 56666665 456799999999997 5778889999999999886

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.63  E-value=1.4e-13  Score=124.36  Aligned_cols=302  Identities=10%  Similarity=0.081  Sum_probs=178.2

Q ss_pred             ceEEEEEeecCCCCCCCeEEEEEEECCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE--eccCCceeEEEecCCCCc
Q 014433           62 SVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ--INHDGEVNRARYMPQNPF  139 (424)
Q Consensus        62 ~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~  139 (424)
                      +.+.|++||++..   ..|+...++-                        ..+++.+++.  +.....+.-|+|+|+++.
T Consensus         1 ~~~~l~vGtyt~~---~~i~~~~fd~------------------------~~~~l~~~~~~~~~~~~~~s~la~s~d~~~   53 (365)
T d1jofa_           1 PLHHLMIGTWTPP---GAIFTVQFDD------------------------EKLTCKLIKRTEIPQDEPISWMTFDHERKN   53 (365)
T ss_dssp             CEEEEEEEESSSS---CEEEEEEEET------------------------TTTEEEEEEEEECCTTCCCSEEEECTTSSE
T ss_pred             CceEEEEEeecCC---CCEEEEEEcC------------------------CCCeEEEeeeeeccCCCCCCEEEEcCCCCE
Confidence            3578999999854   3477766631                        1334555443  446667888999999985


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEe--CCCcEEEEeCCCCCCCC--
Q 014433          140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNK--  215 (424)
Q Consensus       140 ~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~--  215 (424)
                      +.++ . .+.+..|.+...        .................+.++++++.++++..  ..+.|..+.+.......  
T Consensus        54 ly~~-~-~~~~~~~~i~~~--------~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~  123 (365)
T d1jofa_          54 IYGA-A-MKKWSSFAVKSP--------TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EEEE-E-BTEEEEEEEEET--------TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EEEE-e-CCcEEEEEEeCC--------CCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCccee
Confidence            4444 3 467888887651        01111111123344667888888774333332  24556555443221100  


Q ss_pred             -------cc-cceee-eecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCeeEEEecCC
Q 014433          216 -------SL-EAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLAFNPF  284 (424)
Q Consensus       216 -------~~-~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~v~~~~~  284 (424)
                             .+ ..... -......+.++.|+|++++++++......|.+|+.............  .......+.++|+|+
T Consensus       124 ~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd  203 (365)
T d1jofa_         124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred             EeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC
Confidence                   00 00000 11122357899999999988877666778999987654322112221  123467899999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCc-ceEec-----------------CCCCCEEEEEEcCCCCcEEEEEECCC-----e
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTA-LHTFD-----------------SHKEEVFQVGWNPKNETILASCCLGR-----R  341 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~-----------------~h~~~v~~~~~sp~~~~~l~s~~~dg-----~  341 (424)
                      ++.+.++.-.+++|.+|++...... +....                 .+......+.++|+|+.++++...+.     .
T Consensus       204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~  283 (365)
T d1jofa_         204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence            9977777778999999998763211 11110                 11223567899999986555544333     3


Q ss_pred             EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEeCCCcEEEEecCCcc
Q 014433          342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~vw~~~~~~  408 (424)
                      |..|++........        ...+...........+++++| +|++++++...++.|.+|+++...
T Consensus       284 i~~~~~~~~g~~~~--------~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         284 IAGFKLRDCGSIEK--------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEECTTSCEEE--------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEEEecCCCceee--------EeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            77777654321100        011111122234567899998 789777787889999999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.5e-13  Score=123.46  Aligned_cols=243  Identities=14%  Similarity=0.037  Sum_probs=151.5

Q ss_pred             CceeEEEecCCCCcEEEE---------EeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-------CceeEEEecCC
Q 014433          126 GEVNRARYMPQNPFLIAT---------KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-------TEGYGLSWSKF  189 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~lat---------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~  189 (424)
                      +.+..++|+|+++.+.++         +..++.|++||..+          .+....+..+.       .....++|+|+
T Consensus        47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT----------LLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT----------CCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC----------CCEEEEEecCCcceeecCCCCceEEEecC
Confidence            344479999999865544         24578999999987          33344443222       23467899999


Q ss_pred             CCceEEEE--eCCCcEEEEeCCCCCCCCcccceeeeecCC-------ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCC
Q 014433          190 KEGHLLSG--SDDAQICLWDINAAPKNKSLEAMQIFKVHE-------GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP  260 (424)
Q Consensus       190 ~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~  260 (424)
                      +. .++.+  +.+..+.+|+..++..      +..+..+.       .....+.+++++..+++....++.+.+++....
T Consensus       117 g~-~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~  189 (355)
T d2bbkh_         117 GK-TLLFYQFSPAPAVGVVDLEGKAF------KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF  189 (355)
T ss_dssp             SS-EEEEEECSSSCEEEEEETTTTEE------EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC
T ss_pred             CC-eeEEecCCCCceeeeeecCCCcE------eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc
Confidence            88 45554  4567899999987632      22222221       122345556666555544455555555555443


Q ss_pred             CCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-ceEecCC----------CCCEEEEEEcCCC
Q 014433          261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-LHTFDSH----------KEEVFQVGWNPKN  329 (424)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~h----------~~~v~~~~~sp~~  329 (424)
                      ..        .+...+....+.+.+. .++.++.++.+++|++...... +.....+          ......+++++++
T Consensus       190 ~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~  260 (355)
T d2bbkh_         190 HP--------EDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  260 (355)
T ss_dssp             SC--------TTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             cc--------eecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence            21        2334455567777776 4778889999999999863211 1111111          1233568899998


Q ss_pred             CcEEEEEECC---------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcE
Q 014433          330 ETILASCCLG---------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNIL  399 (424)
Q Consensus       330 ~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i  399 (424)
                      ..++++....         ..|.+||..++.              .+..+. +...+.+++|+|+|+. ++++++.|+.|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--------------~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i  325 (355)
T d2bbkh_         261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------------RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTL  325 (355)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------------EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             CeEEEEeccCCceeecCCCCeEEEEeCCCCc--------------EEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence            7544443322         369999998753              233332 2234789999999975 56677789999


Q ss_pred             EEEecCCccC
Q 014433          400 QIWQMAENIY  409 (424)
Q Consensus       400 ~vw~~~~~~~  409 (424)
                      +|||+.++.+
T Consensus       326 ~v~D~~tg~~  335 (355)
T d2bbkh_         326 YIHDAESGEE  335 (355)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCCE
Confidence            9999998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.55  E-value=1e-11  Score=112.20  Aligned_cols=223  Identities=8%  Similarity=-0.096  Sum_probs=142.5

Q ss_pred             eEEEecCCCCcEEEEE-eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          129 NRARYMPQNPFLIATK-TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       129 ~~~~~~p~~~~~latg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      ..+.|+|+++.+++.. ..++.+.+|+...          .    ....+.....++.++|++...+++.+.|+.+.+|+
T Consensus       128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         128 WMNANTPNNADLLFFQFAAGPAVGLVVQGG----------S----SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CcEEEEeCCCcEEEEEEcCCCceEEeeccC----------C----eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEE
Confidence            4578888887544332 3456788888765          1    22334455678999999987788999999999999


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----------cCCCee
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------HQSEVN  277 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~  277 (424)
                      .........................+.+.+++  .++..+.++.+.+|+....... .+.....          ......
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (373)
T d2madh_         194 HAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGAT-NKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             cCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEE-EEEeeccccCcEEeeeeccCcce
Confidence            98764332221111111122223344555544  3446778899999998875421 1111111          122334


Q ss_pred             EEEecCCCCe---------EEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcE-EEEEECCCeEEEeeC
Q 014433          278 CLAFNPFNEW---------ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI-LASCCLGRRLMVWDL  347 (424)
Q Consensus       278 ~v~~~~~~~~---------~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-l~s~~~dg~i~iwd~  347 (424)
                      .+++++++..         .+++...++.+.+||..+ ++.+..+. +...+..++|+|+|+.+ +++++.|+.|+|||+
T Consensus       271 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             eeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            4555555543         234556677899999988 56666665 56789999999999764 568889999999999


Q ss_pred             CCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      .++              +.+..+.++......+++.+
T Consensus       349 ~tg--------------~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         349 GAG--------------DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CCC--------------CEEEEECCCCCCCcEEEEec
Confidence            986              44666666655566666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=1.5e-11  Score=111.09  Aligned_cols=243  Identities=11%  Similarity=-0.069  Sum_probs=147.4

Q ss_pred             eEEEecCCCCcEEEEE---------eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-------CceeEEEecCCCCc
Q 014433          129 NRARYMPQNPFLIATK---------TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-------TEGYGLSWSKFKEG  192 (424)
Q Consensus       129 ~~~~~~p~~~~~latg---------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~  192 (424)
                      ..++|+|+++.+.++.         ..++.|++||..+          .++...+..+.       .....++|+|+|+.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t----------~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT----------FLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT----------CCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC----------CcEeeeecCCccceecccCCccceEECCCCCE
Confidence            3689999997544332         3467899999987          34444444332       22357999999995


Q ss_pred             eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCe---eee
Q 014433          193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV---QSV  269 (424)
Q Consensus       193 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~---~~~  269 (424)
                      ++++...++.+.+||+.+.+      ....+..+...    .+.+.+...+++.+.||.+.++++.........   ...
T Consensus       138 l~va~~~~~~v~~~d~~~~~------~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~  207 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGAS------DDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT  207 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTE------EEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred             EEEEeCCCCeEEEEECCCCc------EeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccc
Confidence            44444568999999998763      23333323221    123444556677888999999988765431111   111


Q ss_pred             eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cC----------CCCCEEEEEEcCCCCcEEEEEE
Q 014433          270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DS----------HKEEVFQVGWNPKNETILASCC  337 (424)
Q Consensus       270 ~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~----------h~~~v~~~~~sp~~~~~l~s~~  337 (424)
                      ..+...+..+.+.+++. .+.+  ..+.+.++++... ......  ..          .......++++|++..++++..
T Consensus       208 ~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~  283 (368)
T d1mdah_         208 GAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAA-GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             TTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSS-CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             cccccceeecccccCcE-EEEe--cCCCEEEEeecCC-ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEec
Confidence            22344556677777764 3333  3456777776642 211111  11          1122345888998875555443


Q ss_pred             CC--------CeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcEEEEecCCcc
Q 014433          338 LG--------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNILQIWQMAENI  408 (424)
Q Consensus       338 ~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~  408 (424)
                      .+        ..|.+||..+++..              ..+. +...+.+++|+|+++. +++++..|+.|+|||..++.
T Consensus       284 ~~~~~~~~~~~~v~v~D~~t~~~~--------------~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         284 EHSRSCLAAAENTSSVTASVGQTS--------------GPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCCEE--------------ECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCceeecCCceEEEEECCCCcEe--------------EEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            33        35889999876432              2211 2235889999999974 56777889999999999886


Q ss_pred             CC
Q 014433          409 YH  410 (424)
Q Consensus       409 ~~  410 (424)
                      ..
T Consensus       349 ~~  350 (368)
T d1mdah_         349 DQ  350 (368)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.2e-12  Score=118.68  Aligned_cols=244  Identities=10%  Similarity=0.111  Sum_probs=154.9

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      |.-......+.|||+.++++...+++|.++|+.+          .+....+. .+...+.+++|+|+++...+++.....
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t----------~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDI----------MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT----------TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCC----------CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCc
Confidence            4456666778899988888888899999999987          33333333 356788999999988764444443333


Q ss_pred             E------------------EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC---------------
Q 014433          203 I------------------CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD---------------  249 (424)
Q Consensus       203 i------------------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---------------  249 (424)
                      +                  ..+|..+..      ...... .......+.++|+++.+++++...               
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~------v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d  212 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMD------VAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD  212 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCS------EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC
T ss_pred             ccccCcccccccccccceEEeecCccce------eeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEE
Confidence            3                  335655432      122222 234578899999999887665332               


Q ss_pred             -------------------------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014433          250 -------------------------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR  304 (424)
Q Consensus       250 -------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~  304 (424)
                                               +.+.+++.....   .+..+... .....+.++|+|+++++++..+++|.+||+.
T Consensus       213 ~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~---v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         213 WVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE---FTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS---SEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             EEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc---eEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence                                     233333332222   23344433 3357799999999988999999999999987


Q ss_pred             CCCCc-------ceEecC---CCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEE----
Q 014433          305 KISTA-------LHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH----  370 (424)
Q Consensus       305 ~~~~~-------~~~~~~---h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----  370 (424)
                      +..+.       ...+.+   ..-.....+|+++| ..+.+...|..|..|++........-.    .....+..+    
T Consensus       289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~----~~~~v~~~~~v~y  363 (441)
T d1qnia2         289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGD----RVNYIRQKLDVQY  363 (441)
T ss_dssp             GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTC----CCCCEEEEEECSS
T ss_pred             hhhhHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccC----CCceeEecccccc
Confidence            53211       111111   12234557899998 477888889999999985321110000    001222222    


Q ss_pred             -cCCCCCcceEEeCCCCCcEEEEEe
Q 014433          371 -GGHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       371 -~~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                       .||...+.+..++|+|+| |++++
T Consensus       364 ~~GH~~~~~~~t~~pdGk~-l~s~~  387 (441)
T d1qnia2         364 QPGHNHASLTESRDADGKW-LVVLS  387 (441)
T ss_dssp             CEEEEEETTTTSTTCCCCE-EEEEE
T ss_pred             CCCCCccccccccCCCCcE-EEecC
Confidence             478888999999999995 88883

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=4.6e-11  Score=108.13  Aligned_cols=252  Identities=9%  Similarity=0.022  Sum_probs=153.4

Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCCCC-------C-CCC------------CCCcEEEecCCCceeEEEecCCCCceEEEEe
Q 014433          139 FLIATKTVSAEVYVFDYSKHPSKPP-------L-DGA------------CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       139 ~~latg~~dg~v~iw~~~~~~~~~~-------~-~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  198 (424)
                      ..+++|+.+|.|+||++.+......       . ...            .........|.-........|+|+.++++..
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            4577888899999999865211000       0 000            0000011123344555666788985556666


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeE------------------EEEEcCC
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYL------------------LIWDLRT  259 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i------------------~i~d~~~  259 (424)
                      .+++|.++|+.+.+.      ...+. .+...+..++|+|+++..++++.....+                  ..+|..+
T Consensus        92 ~~~rVavIDl~t~k~------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          92 ANTRVARIRLDIMKT------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             TTTEEEEEETTTTEE------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             CCCEEEEEECCCCcE------eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            789999999987632      22222 3467889999999998766555444433                  4467766


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeC----------------------------------------CCcEE
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST----------------------------------------DKTVK  299 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~----------------------------------------dg~i~  299 (424)
                      .+.   ...+.. ...+..++|+|+|++++++...                                        ++.+.
T Consensus       166 ~~v---~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v  241 (441)
T d1qnia2         166 MDV---AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV  241 (441)
T ss_dssp             CSE---EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             cee---eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence            443   333332 3467889999999975555432                                        22333


Q ss_pred             EEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcce
Q 014433          300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD  379 (424)
Q Consensus       300 iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  379 (424)
                      +++... ...+..+...+ ....+.++|+|+++++++..+++|.+||+.+......-.  . .+...+.......-....
T Consensus       242 vd~~~~-~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~--~-~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         242 VDGRGE-SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK--I-ELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             EECSSS-CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS--S-CGGGGEEECCBCCSCEEE
T ss_pred             EEcccC-CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc--C-CcceEEEeecccccCccc
Confidence            333333 34555565543 457899999999888888999999999997654211100  0 001111111111223455


Q ss_pred             EEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014433          380 FSWNPCEDWVISSVAEDNILQIWQMAE  406 (424)
Q Consensus       380 ~~~~~~~~~~l~s~~~dg~i~vw~~~~  406 (424)
                      .+|.++|. .+.|...|..|..|++..
T Consensus       317 ~~fd~~g~-~yts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         317 TTFDGRGN-AYTTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             EEECSSSE-EEEEETTTTEEEEEEHHH
T ss_pred             ceecCCce-EEEcccccceEEEeccch
Confidence            68999987 788888999999999853

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=1.8e-10  Score=102.97  Aligned_cols=219  Identities=11%  Similarity=-0.010  Sum_probs=132.5

Q ss_pred             ceeEEEecCCCCcEEEEE-eCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC-------ceeEEEecCCCCceEEEEe
Q 014433          127 EVNRARYMPQNPFLIATK-TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST-------EGYGLSWSKFKEGHLLSGS  198 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~l~s~~  198 (424)
                      ....++|+|++..+++.. +.+..+.+|+...          ......+..+..       ....+.+++++..+++...
T Consensus       107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~  176 (355)
T d2bbkh_         107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG----------KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG  176 (355)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTT----------TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCceEEEecCCCeeEEecCCCCceeeeeecCC----------CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEec
Confidence            446689999997544432 4567899999877          233333333221       1223444554443333333


Q ss_pred             CCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeecc------
Q 014433          199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH------  272 (424)
Q Consensus       199 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------  272 (424)
                      .++.+.+++.....           ..+...+....+.+.+.. ++.++.++.+++|++..+... .+.....+      
T Consensus       177 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         177 TEGTPEITHTEVFH-----------PEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAK-FLPAVEALTEAERA  243 (355)
T ss_dssp             SSSCCEEEECCCCS-----------CTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCE-ECCCEESSCHHHHH
T ss_pred             CCCeEEEEeccccc-----------ceecceeeeccccCCCCe-EEEecCCCeEEEEecCCCcEE-EEeccCCcccceEe
Confidence            34444444443221           123445566777777764 457889999999999876531 11111111      


Q ss_pred             ----CCCeeEEEecCCCCeEEEEEeCC---------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc-EEEEEEC
Q 014433          273 ----QSEVNCLAFNPFNEWILATGSTD---------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET-ILASCCL  338 (424)
Q Consensus       273 ----~~~v~~v~~~~~~~~~l~tg~~d---------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~  338 (424)
                          ......+++++++..++++....         ..|.+||..+ .+.+..+.. ...+.+++|+|+|+. ++++++.
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM-GHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE-EEEECEEEECCSSSCEEEEEETT
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecC-CCCEEEEEEcCCCCeEEEEEECC
Confidence                12345688899888655443322         3699999998 566666653 456899999999975 4566777


Q ss_pred             CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCC
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP  384 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  384 (424)
                      |+.|++||+.++              +.+..+.++......+.+.+
T Consensus       322 d~~i~v~D~~tg--------------~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         322 DKTLYIHDAESG--------------EELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TTEEEEEETTTC--------------CEEEEECCCCSSCCEEECCC
T ss_pred             CCEEEEEECCCC--------------CEEEEEeCcCCCccEEEeCC
Confidence            999999999986              44555555544444444433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=8.8e-11  Score=109.64  Aligned_cols=108  Identities=13%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             ccCCceeEEEecCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCce
Q 014433          123 NHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH  193 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  193 (424)
                      .|...|.++.|+||++ .||.++         .++.+.|||+.+           .....+..|...+..+.|+|+|. .
T Consensus        59 ~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~-----------~~~~~l~~~~~~~~~~~~SPDG~-~  125 (470)
T d2bgra1          59 EFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNK-----------RQLITEERIPNNTQWVTWSPVGH-K  125 (470)
T ss_dssp             TSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTT-----------TEECCSSCCCTTEEEEEECSSTT-C
T ss_pred             hccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECCC-----------CcccccccCCccccccccccCcc-e
Confidence            3556799999999998 555553         357889999987           22334667888899999999998 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCcccc---eeeeec---------CCccEeeEEEecCCCcEEE
Q 014433          194 LLSGSDDAQICLWDINAAPKNKSLEA---MQIFKV---------HEGVVEDVAWHLRHEYLFG  244 (424)
Q Consensus       194 l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~---------~~~~v~~~~~~~~~~~~~~  244 (424)
                      ||.. .++.+.+|++.++........   -..+.+         ..+....+.|+|+|+.++.
T Consensus       126 ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~  187 (470)
T d2bgra1         126 LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAY  187 (470)
T ss_dssp             EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred             eeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccce
Confidence            7764 467899999887643211100   000111         2234566889999986643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.7e-09  Score=90.36  Aligned_cols=227  Identities=8%  Similarity=0.032  Sum_probs=140.7

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  200 (424)
                      .+.+.+...+|||||+.+..+....+  .+.+.+...           .....+..+........|+|++..+++....+
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----------GAVRQVASFPRHNGAPAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----------CCEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc-----------CceeEEeeeecccccceecCCCCeeeEeeecC
Confidence            56777889999999986555544444  355555443           33445666788889999999999655555555


Q ss_pred             CcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE--EEcCCCCCCCCeeeeeccCCCeeE
Q 014433          201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI--WDLRTPSVSKPVQSVVAHQSEVNC  278 (424)
Q Consensus       201 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~v~~  278 (424)
                      +...++.......     ................+++++..++++...+|...+  .++....    .............
T Consensus       105 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~----~~~~~~~~~~~~~  175 (269)
T d2hqsa1         105 GSLNLYVMDLASG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEGSQNQD  175 (269)
T ss_dssp             SSCEEEEEETTTC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSSSEEEE
T ss_pred             Cccceeecccccc-----cceeeeeccccccccccccccccceecccccCCceEeeeeccccc----ceeeecccccccc
Confidence            5544444332211     111122233444556677777777767766665444  4554433    2333345566778


Q ss_pred             EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECC--CeEEEeeCCCCCcccCC
Q 014433          279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTP  356 (424)
Q Consensus       279 v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~  356 (424)
                      ..|+|++..++.+....+...+|......... ....+........|+|+|+.++.+....  ..|.++++....     
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-----  249 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-----  249 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-----
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-----
Confidence            89999999777776666666666555423333 3444566778899999998766665543  357788886532     


Q ss_pred             CCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          357 EDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                                ...+....+.+...+|+|-
T Consensus       250 ----------~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         250 ----------KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ----------EEECCCSSSEEEEEEECCC
T ss_pred             ----------EEEEeCCCCcEEeEEeCCC
Confidence                      2333444556778899983

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.1e-08  Score=87.40  Aligned_cols=228  Identities=10%  Similarity=0.035  Sum_probs=142.4

Q ss_pred             eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc--EEEEeCCCCCCCCcccceeeeecC
Q 014433          149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ--ICLWDINAAPKNKSLEAMQIFKVH  226 (424)
Q Consensus       149 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~  226 (424)
                      .|+|.|...           .....+..+...+..-+|||+|+.+.++....+.  +.+.+.....       ...+..+
T Consensus        20 ~l~i~d~dG-----------~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-------~~~~~~~   81 (269)
T d2hqsa1          20 ELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-------VRQVASF   81 (269)
T ss_dssp             EEEEEETTS-----------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEEEECC
T ss_pred             EEEEEcCCC-----------CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-------eeEEeee
Confidence            577878765           3344555567778899999999954344444443  5555554432       2334456


Q ss_pred             CccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014433          227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI  306 (424)
Q Consensus       227 ~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  306 (424)
                      ........|+|++..++.....++...++.......  ................+++.+..++++...+|...+|.....
T Consensus        82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~  159 (269)
T d2hqsa1          82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  159 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             ecccccceecCCCCeeeEeeecCCccceeecccccc--cceeeeeccccccccccccccccceecccccCCceEeeeecc
Confidence            778889999999998876666665555554443321  123333344555566788888877777777775444443332


Q ss_pred             CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014433          307 STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE  386 (424)
Q Consensus       307 ~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  386 (424)
                      .........+........|+|++..++......+...+|......             ... ....+........|+|+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~-------------~~~-~~~~~~~~~~~p~~SPDG  225 (269)
T d2hqsa1         160 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-------------GGV-QVLSSTFLDETPSLAPNG  225 (269)
T ss_dssp             SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-------------CCE-EECCCSSSCEEEEECTTS
T ss_pred             cccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc-------------ccc-eEeecCccccceEECCCC
Confidence            334445555667788899999998766666666666666554321             111 222334456778999999


Q ss_pred             CcEEEEEeC--CCcEEEEecCCccCC
Q 014433          387 DWVISSVAE--DNILQIWQMAENIYH  410 (424)
Q Consensus       387 ~~~l~s~~~--dg~i~vw~~~~~~~~  410 (424)
                      ++++.+...  ...|.++++..+...
T Consensus       226 ~~i~f~s~~~~~~~l~~~~~dg~~~~  251 (269)
T d2hqsa1         226 TMVIYSSSQGMGSVLNLVSTDGRFKA  251 (269)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            976665543  346788998877544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=1.9e-08  Score=85.54  Aligned_cols=240  Identities=5%  Similarity=-0.029  Sum_probs=145.6

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      +.-....|++.++|..+++..+..+.+..++....          . ...+. .-.....++++.+++. ++++....+.
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~----------~-~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~   79 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----------G-TTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRV   79 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC--------------C-EEECCCCSCCSCCCEEECTTCC-EEEEETTTEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------e-EEEeccCCccCceEEEEcCCCC-EEEeeeeece
Confidence            33456789999998755555556678887776651          1 11111 1123457889999876 5666555556


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +++++-.....      ..... ......++++.+++. ++++-..+..+..++......   .............++++
T Consensus        80 i~~~~~~~~~~------~~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          80 VTLAAGSNNQT------VLPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             EEECTTCSCCE------ECCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSC---EECCCCSCCSCCEEEEC
T ss_pred             eeeeeecccee------eeeee-eeeecccccccccce-eEeecccccccccccccccee---eeeeecccCCcceeeec
Confidence            66554433211      11111 234578999999875 665666677777777655332   11111223456789999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG  362 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  362 (424)
                      +++. ++++...++.|..+|.... .........-.....+++.+++. ++++....+.|..++......          
T Consensus       149 ~~g~-~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~----------  215 (260)
T d1rwia_         149 NSGN-VYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS----------  215 (260)
T ss_dssp             TTCC-EEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCC----------
T ss_pred             CCCC-Eeeeccccccccccccccc-eeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeE----------
Confidence            9887 6777778888999997752 22222223345678999999984 777777788888887654211          


Q ss_pred             CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                         .+. ....-....++++++++. ++++-..+++|+..+.
T Consensus       216 ---~~~-~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         216 ---TVL-PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ---EEC-CCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECC
T ss_pred             ---EEE-ccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeC
Confidence               011 111223467899999998 7777667776665544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.12  E-value=1.2e-09  Score=98.32  Aligned_cols=205  Identities=11%  Similarity=-0.002  Sum_probs=128.6

Q ss_pred             eeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEe
Q 014433          128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD  207 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  207 (424)
                      ...++|+|+|+.++++...++.+.+||+.+          .+....+..+...    .+.+.+...+++.+.||.+.+++
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~----------~~~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPG----------ASDDQLTKSASCF----HIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETT----------TEEEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCC----------CcEeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEE
Confidence            446899999987666656789999999987          3434444444332    22334444677888899999998


Q ss_pred             CCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeec----------cCCCee
Q 014433          208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----------HQSEVN  277 (424)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~v~  277 (424)
                      +.................+...+....+.+++. .+  ....+.+.+++....... .+.....          ......
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~--~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LV--WAVASSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EE--ECBSSCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSS
T ss_pred             ecCCceeeeeeecccccccccceeecccccCcE-EE--EecCCCEEEEeecCCceE-EEeecccccceeeeeeecCCCce
Confidence            876644322222222333445556667777653 32  234566777776654320 0000000          112234


Q ss_pred             EEEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCc-EEEEEECCCeEEEeeCC
Q 014433          278 CLAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLS  348 (424)
Q Consensus       278 ~v~~~~~~~~~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~  348 (424)
                      .+++++++..++++...+        ..|.+||..+ ++.+..+.. ...+.+++|+|+++. +++++..|+.|++||..
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            578888888655543322        3589999998 566666653 467899999999975 45677789999999998


Q ss_pred             CCCc
Q 014433          349 RIDE  352 (424)
Q Consensus       349 ~~~~  352 (424)
                      +++.
T Consensus       346 tgk~  349 (368)
T d1mdah_         346 SDQD  349 (368)
T ss_dssp             SCEE
T ss_pred             CCCE
Confidence            8743

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=3.8e-08  Score=85.61  Aligned_cols=242  Identities=7%  Similarity=0.036  Sum_probs=157.6

Q ss_pred             EEEEEEeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEE
Q 014433          116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       116 ~~~~~~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  195 (424)
                      .+++..+.-...+..+++.|+|. ++++...+++|+.|+...           . ...+......+.+++|.+++. +++
T Consensus        18 ~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g-----------~-~~~~~~~~~~~~gla~~~dG~-l~v   83 (302)
T d2p4oa1          18 AKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDG-----------N-QQIHATVEGKVSGLAFTSNGD-LVA   83 (302)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTC-----------C-EEEEEECSSEEEEEEECTTSC-EEE
T ss_pred             ccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCC-----------C-EEEEEcCCCCcceEEEcCCCC-eEE
Confidence            45566666666788999999996 888888899988888554           1 334555677899999999987 788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee------
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV------  269 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~------  269 (424)
                      +...++.+..|+......  ....+.. .......+.+++.+++. ++++.+.++.+..+|...+...  +...      
T Consensus        84 ~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~  157 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDG--TVETLLT-LPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGS--IWLEHPMLAR  157 (302)
T ss_dssp             EEECTTSCEEEEEECTTS--CEEEEEE-CTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEE--EEEECGGGSC
T ss_pred             EecCCceEEEEEeccccc--ceeeccc-cCCccccceeEEccCCC-EEeeccccccceeeeccCCcce--eEecCCccce
Confidence            888888888888755322  1111111 12345688999999875 6667778888888888764310  1000      


Q ss_pred             ---eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc-eEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEe
Q 014433          270 ---VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL-HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW  345 (424)
Q Consensus       270 ---~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iw  345 (424)
                         .........+.++  +..++++.+..+.|..++........ ............++++++|. ++++...++.|..+
T Consensus       158 ~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i  234 (302)
T d2p4oa1         158 SNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRI  234 (302)
T ss_dssp             SSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEE
T ss_pred             eeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEE
Confidence               0112234566665  45578888889999999987633211 11112234567899999995 77777788888888


Q ss_pred             eCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEe---CCCCCcEEEEE
Q 014433          346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW---NPCEDWVISSV  393 (424)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s~  393 (424)
                      +.....             ..+..........+.++|   .+|++.|.++.
T Consensus       235 ~p~G~~-------------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         235 APDRST-------------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             CTTCCE-------------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCCE-------------EEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            765311             112222223345788999   67777555554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1.9e-07  Score=80.12  Aligned_cols=236  Identities=15%  Similarity=0.143  Sum_probs=151.5

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec------CCCceeEEEecCCCCceEEE-EeC
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG------HSTEGYGLSWSKFKEGHLLS-GSD  199 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s-~~~  199 (424)
                      ....|++.|++. ++++-..+..|++||.+.           ..+..+..      .......+++.++...++++ .+.
T Consensus        24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~G-----------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   91 (279)
T d1q7fa_          24 EPSGVAVNAQND-IIVADTNNHRIQIFDKEG-----------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP   91 (279)
T ss_dssp             CEEEEEECTTCC-EEEEEGGGTEEEEECTTS-----------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             CccEEEEcCCCC-EEEEECCCCEEEEEeCCC-----------CEEEEecccCCCcccccccccccccccccccceeccCC
Confidence            357899999886 777767788999999654           11222211      11133456665554434443 344


Q ss_pred             CCcEEEEeCCCCCCCCcccceeeee-cCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeee--eccCCCe
Q 014433          200 DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV--VAHQSEV  276 (424)
Q Consensus       200 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v  276 (424)
                      ++.|..++....       ....+. ........+++.+++. ++++....+.+.+++....    .+..+  ..+....
T Consensus        92 ~~~i~~~~~~g~-------~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~----~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          92 THQIQIYNQYGQ-------FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN----VLHKFGCSKHLEFP  159 (279)
T ss_dssp             GCEEEEECTTSC-------EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC----EEEEEECTTTCSSE
T ss_pred             cccccccccccc-------ceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCc----eeeccccccccccc
Confidence            567777775432       112221 2335567888888876 5556666777888876432    13332  2345677


Q ss_pred             eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcEEEEEEC-CCeEEEeeCCCCCcc
Q 014433          277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCL-GRRLMVWDLSRIDEE  353 (424)
Q Consensus       277 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~~-dg~i~iwd~~~~~~~  353 (424)
                      ..+++.+++. ++++....+.|++||..  ++.+.++.  +.......|++.+++. ++++-.. ++.|.+|+..-    
T Consensus       160 ~~i~~d~~g~-i~v~d~~~~~V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G----  231 (279)
T d1q7fa_         160 NGVVVNDKQE-IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG----  231 (279)
T ss_dssp             EEEEECSSSE-EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS----
T ss_pred             ceeeecccee-EEeeeccccceeeeecC--CceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCC----
Confidence            8899999876 78888888999999976  45566653  2345678999999996 6666543 45799998532    


Q ss_pred             cCCCCcCCCCCeeeEEE--cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          354 QTPEDAEDGPPELLFIH--GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       354 ~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                                 .++..+  .........+++.|+|. ++++ +.++.|++|+....
T Consensus       232 -----------~~~~~~~~~~~~~~p~~vav~~dG~-l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         232 -----------QLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             -----------CEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCC
T ss_pred             -----------CEEEEEeCCCCCCCEeEEEEeCCCc-EEEE-eCCCeEEEEEeeee
Confidence                       333333  22233578899999997 5554 57899999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.03  E-value=2.4e-07  Score=80.74  Aligned_cols=247  Identities=10%  Similarity=0.075  Sum_probs=148.5

Q ss_pred             ceeEEEecCCCCcEEEEEeC-------CCeEEEEeCCCCCCCCCCCCCCCCcEEEe----cCCCceeEEEecCCCCceEE
Q 014433          127 EVNRARYMPQNPFLIATKTV-------SAEVYVFDYSKHPSKPPLDGACSPDLRLR----GHSTEGYGLSWSKFKEGHLL  195 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~  195 (424)
                      ....++|.|+|. +.++...       +|.|..||..+.          .......    ........++|.+++. +++
T Consensus        19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~----------~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~   86 (314)
T d1pjxa_          19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTG----------KKTVICKPEVNGYGGIPAGCQCDRDAN-QLF   86 (314)
T ss_dssp             TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTC----------CEEEEECCEETTEECCEEEEEECSSSS-EEE
T ss_pred             CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCC----------cEEEEECCccccCCCcceeEEEeCCCC-EEE
Confidence            355679999987 4443221       467888887651          1111111    1112357899999887 577


Q ss_pred             EEeCCCcEEEEeCCCCCCCCcccceeeeecC-CccEeeEEEecCCCcEEEEEeC---------------CCeEEEEEcCC
Q 014433          196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGD---------------DQYLLIWDLRT  259 (424)
Q Consensus       196 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~---------------dg~i~i~d~~~  259 (424)
                      ++...+.|...+........   ......+. -...+++++.+++. ++++-..               .|.|..++...
T Consensus        87 vad~~~~i~~~~~~g~~~~~---~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg  162 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEI---AKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             EEETTTEEEEEETTSCEEEC---CSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             EEECCCeEEEEeCCCcEEEE---EeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecC
Confidence            77766778888876542100   00001111 12367899999986 5445321               23344444321


Q ss_pred             CCCCCCeeeeeccCCCeeEEEecCCCC----eEEEEEeCCCcEEEEECCCCCCcc-----eEecC-CCCCEEEEEEcCCC
Q 014433          260 PSVSKPVQSVVAHQSEVNCLAFNPFNE----WILATGSTDKTVKLFDLRKISTAL-----HTFDS-HKEEVFQVGWNPKN  329 (424)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~v~~~~~~~----~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~~-h~~~v~~~~~sp~~  329 (424)
                       +    ...+...-...+.++|+|++.    .++++-+..+.|..||+...+...     ..+.. +......+++..+|
T Consensus       163 -~----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         163 -Q----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             -C----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             -c----eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence             1    222222333457889988764    466666778899999987533221     12222 22345789999999


Q ss_pred             CcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccC
Q 014433          330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY  409 (424)
Q Consensus       330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~  409 (424)
                      . ++++....+.|.+||...+              .+...........++++|.|+++.++++.+.+|.|...++...-.
T Consensus       238 n-lyVa~~~~g~I~~~dp~~g--------------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         238 N-LLVANWGSSHIEVFGPDGG--------------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             C-EEEEEETTTEEEEECTTCB--------------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             c-EEEEEcCCCEEEEEeCCCC--------------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            5 7777778889999997654              223333334456789999999876788888889888888765443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.93  E-value=1.1e-07  Score=85.11  Aligned_cols=168  Identities=11%  Similarity=0.065  Sum_probs=107.7

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      -+.++.|+|+++.++++......|.+|+.............. ..........++|+|+++.++++...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~-~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee-ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            468999999998444444445678888875442211111111 1123457889999999998888888899999999976


Q ss_pred             CCCCCCeeeee-----------------ccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceE-----
Q 014433          260 PSVSKPVQSVV-----------------AHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHT-----  312 (424)
Q Consensus       260 ~~~~~~~~~~~-----------------~~~~~v~~v~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~-----  312 (424)
                      .... .+....                 .+......+.++|+|++++++...+.     .|..|++...+.....     
T Consensus       225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         225 ATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCce-EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            5431 111110                 11123457899999997666644333     3888888764332211     


Q ss_pred             ecCCCCCEEEEEEcC-CCCcEEEEEECCCeEEEeeCCC
Q 014433          313 FDSHKEEVFQVGWNP-KNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       313 ~~~h~~~v~~~~~sp-~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                      ..........++++| +|+.++++...++.|.+|+++.
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            122344567899998 6776666667789999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=5.5e-06  Score=72.13  Aligned_cols=232  Identities=9%  Similarity=0.040  Sum_probs=142.7

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC----CC
Q 014433          126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD----DA  201 (424)
Q Consensus       126 ~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg  201 (424)
                      ..+..++|.+++. +.++-...+.|+.|+...          ......+........+|++.++|. ++++...    .+
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g----------~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~  107 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPET----------KEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTG  107 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTT----------CCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCC
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCC----------CeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccce
Confidence            3457899999886 777777888998888765          222233444556788999999886 5554432    23


Q ss_pred             cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC------CCeEEEEEcCCCCCCCCeeeeeccCCC
Q 014433          202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD------DQYLLIWDLRTPSVSKPVQSVVAHQSE  275 (424)
Q Consensus       202 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~  275 (424)
                      .+...+......    .....-..-....+++++.++|. ++++...      .+.+..++.....    +..+...-..
T Consensus       108 ~i~~~~~~~~~~----~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~----~~~~~~~~~~  178 (319)
T d2dg1a1         108 GIFAATENGDNL----QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQNISV  178 (319)
T ss_dssp             EEEEECTTSCSC----EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC----EEEEEEEESS
T ss_pred             eEEEEcCCCcee----eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce----eEEEeeccce
Confidence            344444443321    11110011124578899999986 5544322      2335444443322    3333233345


Q ss_pred             eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe-------cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       276 v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                      .+.|+|+|+++.++++-+..+.|..||+...+......       .........+++.++|. +.++....+.|.+|+-.
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCC
Confidence            67899999998777777788999999987644332211       11123457899999995 77888889999999964


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEc------CCCCCcceEEeCCCCCcEEEEEe
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHG------GHTSKISDFSWNPCEDWVISSVA  394 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~  394 (424)
                       +              +++..+.      ++...+++++|.+....++++..
T Consensus       258 -G--------------~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         258 -G--------------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             -S--------------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             -C--------------cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence             3              2233222      34456789999998875555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=2.3e-07  Score=80.55  Aligned_cols=200  Identities=14%  Similarity=0.102  Sum_probs=135.9

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT  259 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~  259 (424)
                      .+..+++.|+|. ++++...+++|..|+....        ...+......+.+++|++++. ++++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~--------~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGN--------QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCC--------EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC--------EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecc
Confidence            577899999997 7888888999988886532        223344567899999999986 677787888888888765


Q ss_pred             CCCCCCeeee--eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe---------cCCCCCEEEEEEcCC
Q 014433          260 PSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF---------DSHKEEVFQVGWNPK  328 (424)
Q Consensus       260 ~~~~~~~~~~--~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---------~~h~~~v~~~~~sp~  328 (424)
                      ...  ....+  .......+.+++.+++. ++++.+.++.+..+|.......+...         .........+.++. 
T Consensus        99 ~~~--~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-  174 (302)
T d2p4oa1          99 SDG--TVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-  174 (302)
T ss_dssp             TTS--CEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-
T ss_pred             ccc--ceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-
Confidence            432  12222  22345688999999886 67777788888888877521111111         11123456677764 


Q ss_pred             CCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                       ..++++.+..+.|..+++........        ... ..   ......++++.++|. ++++...++.|..++...+
T Consensus       175 -~~l~~~~~~~~~i~~~~~~~~~~~~~--------~~~-~~---~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         175 -NFLYVSNTEKMLLLRIPVDSTDKPGE--------PEI-FV---EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             -TEEEEEETTTTEEEEEEBCTTSCBCC--------CEE-EE---ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC
T ss_pred             -CceeeecCCCCeEEeccccccccccc--------ccc-cc---CCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC
Confidence             35777888889898888765432111        011 11   123467899999998 7777778899999988765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=8.2e-09  Score=95.95  Aligned_cols=154  Identities=12%  Similarity=0.147  Sum_probs=104.0

Q ss_pred             eEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE--------eCCCeEE
Q 014433          182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV--------GDDQYLL  253 (424)
Q Consensus       182 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~--------~~dg~i~  253 (424)
                      ..+.|.+++. ++.  ..++.+.+||+.+++....+ ....+..|...|.++.|+|+++.++.+.        +.++.+.
T Consensus        20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEEE-CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEEE-chhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            4688999775 555  35788999999988542111 1123455677899999999998765332        2357889


Q ss_pred             EEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecC------------------
Q 014433          254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS------------------  315 (424)
Q Consensus       254 i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~------------------  315 (424)
                      +||+.+++    +..+..+...+..+.|+|+|.. +|.. .++.+.+|+... +...+....                  
T Consensus        96 l~d~~~~~----~~~l~~~~~~~~~~~~SPDG~~-ia~~-~~~~l~~~~~~~-g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          96 IYDLNKRQ----LITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPN-LPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEETTTTE----ECCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTT-SCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEECCCCc----ccccccCCccccccccccCcce-eeEe-ecccceEEECCC-CceeeeeeccCCCcccccccceeeeee
Confidence            99999876    3445667889999999999996 5554 467899999887 343332221                  


Q ss_pred             CCCCEEEEEEcCCCCcEEEEEECC-CeEEEeeC
Q 014433          316 HKEEVFQVGWNPKNETILASCCLG-RRLMVWDL  347 (424)
Q Consensus       316 h~~~v~~~~~sp~~~~~l~s~~~d-g~i~iwd~  347 (424)
                      ..+....+.|||+|+. ||....| ..+..|.+
T Consensus       169 ~~~~~~~~~wSPDGk~-ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         169 VFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred             ecCCccccEECCCCCc-cceeEecCCcCceEEE
Confidence            1233466889999974 6665544 33444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.80  E-value=1.1e-06  Score=76.42  Aligned_cols=206  Identities=9%  Similarity=0.087  Sum_probs=127.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCceeEEEecCCCCceEEEEeC------
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSD------  199 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~------  199 (424)
                      ....++|.+++. ++.++...+.|..++........       ......+. -...+.+++.++|. +.++-..      
T Consensus        72 ~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~~~~-------~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~  142 (314)
T d1pjxa_          72 IPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTFEEI-------AKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPA  142 (314)
T ss_dssp             CEEEEEECSSSS-EEEEEETTTEEEEEETTSCEEEC-------CSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTS
T ss_pred             cceeEEEeCCCC-EEEEEECCCeEEEEeCCCcEEEE-------EeccccccccCCCcEEEECCCCC-EEEecCccCcccc
Confidence            467899999886 45555556678888876511000       00000011 01256788998876 4444221      


Q ss_pred             ---------CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCC----cEEEEEeCCCeEEEEEcCCCCCCCCe
Q 014433          200 ---------DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE----YLFGSVGDDQYLLIWDLRTPSVSKPV  266 (424)
Q Consensus       200 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~s~~~dg~i~i~d~~~~~~~~~~  266 (424)
                               .|.|..++....        ...+...-...+.++|++++.    .++++-+..+.|..||+.........
T Consensus       143 ~~~~~~~~~~G~v~~~~~dg~--------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~  214 (314)
T d1pjxa_         143 DYTRSMQEKFGSIYCFTTDGQ--------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK  214 (314)
T ss_dssp             CCCBTTSSSCEEEEEECTTSC--------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred             cccceeccCCceEEEEeecCc--------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee
Confidence                     223433433211        111111223456889998764    47767778899999998754321111


Q ss_pred             eee---ec-cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeE
Q 014433          267 QSV---VA-HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL  342 (424)
Q Consensus       267 ~~~---~~-~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i  342 (424)
                      ..+   .. .......+++..+|. ++++....+.|.+||... +..+..+..+...+++++|.|+++.++++.+.+|.|
T Consensus       215 ~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~-g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i  292 (314)
T d1pjxa_         215 KVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             EEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC-BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCC-CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcE
Confidence            111   11 122356789999887 677777788999999876 566666776667899999999987788888888999


Q ss_pred             EEeeCCCCC
Q 014433          343 MVWDLSRID  351 (424)
Q Consensus       343 ~iwd~~~~~  351 (424)
                      ..+++....
T Consensus       293 ~~~~~~~~G  301 (314)
T d1pjxa_         293 WKFEWQRNG  301 (314)
T ss_dssp             EEEECSSCB
T ss_pred             EEEECCCCC
Confidence            888886543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.67  E-value=3.3e-05  Score=66.17  Aligned_cols=228  Identities=12%  Similarity=0.044  Sum_probs=144.4

Q ss_pred             EEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCC
Q 014433          130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN  209 (424)
Q Consensus       130 ~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  209 (424)
                      +..|.+.+..+..+--..+.|.-||..+          . .. ........+.++++.+++.  |+.++.+ .+.++|..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~----------g-~~-~~~~~~~~~~~i~~~~dg~--l~va~~~-gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLAS----------G-RK-TVHALPFMGSALAKISDSK--QLIASDD-GLFLRDTA   86 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTT----------T-EE-EEEECSSCEEEEEEEETTE--EEEEETT-EEEEEETT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCC----------C-eE-EEEECCCCcEEEEEecCCC--EEEEEeC-ccEEeecc
Confidence            4568876555666655678999999876          1 12 2223455788899988765  4445554 58889988


Q ss_pred             CCCCCCcccceeeeec--CCccEeeEEEecCCCcEEEEEeC---CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCC
Q 014433          210 AAPKNKSLEAMQIFKV--HEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF  284 (424)
Q Consensus       210 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~  284 (424)
                      +++.    ..+.....  ....++++.+.|+|...+.+...   .+.-.+|.+..++    +..+...-...+.++|+++
T Consensus        87 tg~~----~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~----~~~~~~~~~~~Ng~~~s~d  158 (295)
T d2ghsa1          87 TGVL----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK----VTKLFADISIPNSICFSPD  158 (295)
T ss_dssp             TCCE----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE----EEEEEEEESSEEEEEECTT
T ss_pred             ccee----eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc----EEEEeeccCCcceeeecCC
Confidence            7632    11111111  22468899999999744433221   2344566665543    2222223345688999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCC-----c--ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKIST-----A--LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE  357 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~-----~--~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  357 (424)
                      +..++++-+..+.|..|++.....     .  ........+....+++..+|. +.++.-..+.|..||...        
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G--------  229 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG--------  229 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC--------
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCC--------
Confidence            998788888889999998753211     1  112223345678899999995 666666788899999643        


Q ss_pred             CcCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCC
Q 014433          358 DAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAED  396 (424)
Q Consensus       358 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d  396 (424)
                             +++..+.-....+++++|- ++.+.|++|++..
T Consensus       230 -------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         230 -------NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             -------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -------cEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence                   4444444444568999995 6767677776643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=4.6e-06  Score=70.27  Aligned_cols=200  Identities=7%  Similarity=-0.015  Sum_probs=123.2

Q ss_pred             CceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcC
Q 014433          179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR  258 (424)
Q Consensus       179 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~  258 (424)
                      ....+|++.++|.-+++..+..+.+..++......     ...... -......+++++++. ++++....+.+++++-.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-----~~~~~~-~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----TVLPFN-GLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-----EECCCC-SCCSCCCEEECTTCC-EEEEETTTEEEEECTTC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-----EEeccC-CccCceEEEEcCCCC-EEEeeeeeceeeeeeec
Confidence            45689999998873333445667787777654321     111111 123457889999875 67676666666665544


Q ss_pred             CCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC
Q 014433          259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL  338 (424)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~  338 (424)
                      ....   +.. .........|++++++. ++++-.....+..++............ .......+++++++. ++++...
T Consensus        87 ~~~~---~~~-~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~-~~v~~~~  159 (260)
T d1rwia_          87 NNQT---VLP-FDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGN-VYVTDTD  159 (260)
T ss_dssp             SCCE---ECC-CCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCC-EEEEEGG
T ss_pred             ccee---eee-eeeeeecccccccccce-eEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCC-Eeeeccc
Confidence            3221   111 12235678999999887 666666666777777654221111111 124567899999885 7778788


Q ss_pred             CCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ++.|..++......              .............+++.+++. ++++....+.|..++....
T Consensus       160 ~~~i~~~d~~~~~~--------------~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         160 NNRVVKLEAESNNQ--------------VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             GTEEEEECTTTCCE--------------EECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS
T ss_pred             ccccccccccccee--------------eeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC
Confidence            88899998765321              111112334568899999998 7888777888888877655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=6.7e-06  Score=71.57  Aligned_cols=211  Identities=8%  Similarity=0.032  Sum_probs=126.6

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC----CCeE
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----DQYL  252 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~----dg~i  252 (424)
                      ....+-+++|.+++. +.++-...+.|..|+.....      ..............+++++++. ++++...    .+.+
T Consensus        38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~------~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKE------IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGI  109 (319)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCC------EEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEE
T ss_pred             CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCe------EEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeE
Confidence            334456899999886 67777788999999886542      1222333455678999999986 5544432    2345


Q ss_pred             EEEEcCCCCCCCCeeeee--ccCCCeeEEEecCCCCeEEEEEeC------CCcEEEEECCCCCCcceEecCCCCCEEEEE
Q 014433          253 LIWDLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGST------DKTVKLFDLRKISTALHTFDSHKEEVFQVG  324 (424)
Q Consensus       253 ~i~d~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~  324 (424)
                      ...+......   .....  ......+.+++.++|. +.++...      .+.+..++..  +..+..+...-...+.++
T Consensus       110 ~~~~~~~~~~---~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         110 FAATENGDNL---QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIA  183 (319)
T ss_dssp             EEECTTSCSC---EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEE
T ss_pred             EEEcCCCcee---eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecc--cceeEEEeeccceeeeee
Confidence            5555544332   11111  1234577899999997 4555322      1234444433  333343333334568899


Q ss_pred             EcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014433          325 WNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM  404 (424)
Q Consensus       325 ~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~  404 (424)
                      |+|+++.++++-+..+.|..|++..........     .........+ ....-.+++.++|+ +.++....+.|.+++.
T Consensus       184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~-----~~~~~~~~~~-~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-----GATIPYYFTG-HEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-----EEEEEEECCS-SSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred             eccccceEEEecccCCceEEEEEcCCCceeccc-----cceeeeccCC-ccceeeeeEcCCCC-EEEEEcCCCEEEEECC
Confidence            999998777777788999999986432110000     0001111111 12246799999999 7788788999999998


Q ss_pred             CCcc
Q 014433          405 AENI  408 (424)
Q Consensus       405 ~~~~  408 (424)
                      ....
T Consensus       257 ~G~~  260 (319)
T d2dg1a1         257 RGYP  260 (319)
T ss_dssp             TSCE
T ss_pred             CCcE
Confidence            6543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=2.5e-05  Score=66.37  Aligned_cols=202  Identities=15%  Similarity=0.112  Sum_probs=126.8

Q ss_pred             ceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEE-EEeCCCeEEEEEcC
Q 014433          180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG-SVGDDQYLLIWDLR  258 (424)
Q Consensus       180 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-s~~~dg~i~i~d~~  258 (424)
                      ....|++.+++. ++++-..+..|++||.+.. ....+.....-.........+++.++....++ ..+.++.|.+++..
T Consensus        24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQND-IIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCC-EEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCC-EEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            357899999877 6666667889999997532 11111000000111123445666655444443 33455677777754


Q ss_pred             CCCCCCCeeeee-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe--cCCCCCEEEEEEcCCCCcEEEE
Q 014433          259 TPSVSKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETILAS  335 (424)
Q Consensus       259 ~~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~l~s  335 (424)
                      . .   ....+. ........++..+++. ++++....+.+.+++..  +..+..+  ..+......+++.+++ .++++
T Consensus       102 g-~---~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~  173 (279)
T d1q7fa_         102 G-Q---FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQ-EIFIS  173 (279)
T ss_dssp             S-C---EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSS-EEEEE
T ss_pred             c-c---ceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC--Cceeecccccccccccceeeeccce-eEEee
Confidence            3 2   122321 2345578899999887 56676667778888765  4555554  3445678899999988 47888


Q ss_pred             EECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeC-CCcEEEEecCCc
Q 014433          336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAE-DNILQIWQMAEN  407 (424)
Q Consensus       336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~  407 (424)
                      ....+.|.+|+...               ..+..+.  ++.....++++.++|. ++++-.. ++.|.+|+....
T Consensus       174 d~~~~~V~~~d~~G---------------~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~  232 (279)
T d1q7fa_         174 DNRAHCVKVFNYEG---------------QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ  232 (279)
T ss_dssp             EGGGTEEEEEETTC---------------CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC
T ss_pred             eccccceeeeecCC---------------ceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCC
Confidence            88889999999754               3344432  3445578899999998 6766543 457999986544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.32  E-value=4.4e-05  Score=64.40  Aligned_cols=238  Identities=7%  Similarity=-0.011  Sum_probs=118.6

Q ss_pred             EecCC--CCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCC-----cEE
Q 014433          132 RYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QIC  204 (424)
Q Consensus       132 ~~~p~--~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~  204 (424)
                      ..+|+  |..++.+  .+|.|.+.|+..           .....+..+.+.+...+|||+|+.+.++...++     .|.
T Consensus         5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~-----------g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~   71 (281)
T d1k32a2           5 LLNPDIHGDRIIFV--CCDDLWEHDLKS-----------GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY   71 (281)
T ss_dssp             CEEEEEETTEEEEE--ETTEEEEEETTT-----------CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEE
T ss_pred             ccCCCCCCCEEEEE--eCCcEEEEECCC-----------CCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEE
Confidence            45788  8754444  357788889886           224567778888899999999985444443332     366


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC-----CCeEEEEEcCCCCCCCCeeeeeccCCCeeEE
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-----DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL  279 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v  279 (424)
                      +++...+....-..................|+|+++.++.+...     ...+...+.....    ...  .+......+
T Consensus        72 ~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~  145 (281)
T d1k32a2          72 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN----FVP--LNLGPATHI  145 (281)
T ss_dssp             EEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE----EEE--CCSCSCSEE
T ss_pred             EEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce----eEE--ecCCcccee
Confidence            66765553210000000011122345678899999866543222     1224444444322    111  122223333


Q ss_pred             EecCCCCeEEEEEeCCC-----------cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCC--eEEEee
Q 014433          280 AFNPFNEWILATGSTDK-----------TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWD  346 (424)
Q Consensus       280 ~~~~~~~~~l~tg~~dg-----------~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd  346 (424)
                      .+ +++...++......           ...+..... . .......+........++++.  ++.....++  .|.++|
T Consensus       146 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d  220 (281)
T d1k32a2         146 LF-ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-G-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTD  220 (281)
T ss_dssp             EE-ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-T-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEE
T ss_pred             ee-cCCCeEEEeeccccceeeeeccCCcceeeeeccc-c-ceeeccCCccccceeeeeccc--cceecccccccceEEEe
Confidence            33 33333343322211           111111111 1 112222233445556666643  344444443  466667


Q ss_pred             CCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCccCCC
Q 014433          347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD  411 (424)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~  411 (424)
                      +.....               ..+..+. ......|+|+|+.++.+  .++.|+++++.++..+.
T Consensus       221 ~~g~~~---------------~~lt~~~-~~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         221 LDGKDL---------------RKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             TTSCSC---------------EECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCEEE
T ss_pred             CCCCce---------------EEeecCC-CcccccCcCCCCEEEEE--eCCEEEEEECCCCCEEE
Confidence            665322               1111111 12334689999965554  36789999998886543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.2e-05  Score=73.79  Aligned_cols=156  Identities=11%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEE--------eCCCeEEEE
Q 014433          184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV--------GDDQYLLIW  255 (424)
Q Consensus       184 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~--------~~dg~i~i~  255 (424)
                      ..|.+++. ++ .-..+|.|.+||+.++... .+  +.......-.+....|+|+++.+++..        +..+.+.++
T Consensus        22 ~~W~~~~~-~~-~~~~~g~i~~~~~~~~~~~-~l--~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTE-FI-YREQKGTVRLWNVETNTST-VL--IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSC-BC-CCCSSSCEEEBCGGGCCCE-EE--ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCc-EE-EEeCCCcEEEEECCCCCEE-EE--EcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            46888765 44 3456789999999877431 11  111111223567788999999876543        335789999


Q ss_pred             EcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec-CCCCCE--------------
Q 014433          256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEV--------------  320 (424)
Q Consensus       256 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~h~~~v--------------  320 (424)
                      |+.++.. .++.........+....|+|+|.. +|-.. ++.|.+.+... +..++... +....|              
T Consensus        97 d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~-~~~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1          97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EccCCce-eeccCccCCccccceeeeccCCce-EEEEe-cceEEEEecCC-CceEEEecccCcceeeccccchhhhhhhc
Confidence            9998763 222222233445667899999997 44433 66788888776 33333222 211112              


Q ss_pred             ---EEEEEcCCCCcEEEEEECCCeEEEeeCC
Q 014433          321 ---FQVGWNPKNETILASCCLGRRLMVWDLS  348 (424)
Q Consensus       321 ---~~~~~sp~~~~~l~s~~~dg~i~iwd~~  348 (424)
                         ..+-|||+|+.+++.-..+..|..+.+.
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             cccceEEECCCCCeEEEEEecccccceeecc
Confidence               4678999998655554455666666553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=0.00013  Score=66.70  Aligned_cols=168  Identities=8%  Similarity=0.080  Sum_probs=88.7

Q ss_pred             cEeeEEEecCCCcEEEEEeCC---CeEEEEEcCCCCCCCCeeeeeccCCCe----eEEEecCCCCeEEEE-Ee-CCC--c
Q 014433          229 VVEDVAWHLRHEYLFGSVGDD---QYLLIWDLRTPSVSKPVQSVVAHQSEV----NCLAFNPFNEWILAT-GS-TDK--T  297 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~v----~~v~~~~~~~~~l~t-g~-~dg--~  297 (424)
                      -+..+.|++++..++.....+   ..+.++|..++... .+.. ......|    ....|.|+|..++.. .+ .+|  .
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~-~~~~-e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~  333 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHE-DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEE-EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE-EEEE-EcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence            467789999886444443333   25778898887641 1111 1122222    345788988864332 22 233  4


Q ss_pred             EEEEECC-----CCCCcceEecCCCCCEEEE-EEcCCCCcEEEEEECCC--eEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433          298 VKLFDLR-----KISTALHTFDSHKEEVFQV-GWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFI  369 (424)
Q Consensus       298 i~iwd~~-----~~~~~~~~~~~h~~~v~~~-~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                      ++..++.     ..+..+..+....-.|..+ .|++.++.+++++..++  .-.||.+......         ...++..
T Consensus       334 ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~---------~~~~lt~  404 (465)
T d1xfda1         334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF---------NRQCLSC  404 (465)
T ss_dssp             EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC---------CCBCSST
T ss_pred             eEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC---------cceeecc
Confidence            4444432     1123334444434556665 68988877766776543  3345555422110         0111111


Q ss_pred             EcCCCCCcceEEeCCCCCcEEEEEeCC--CcEEEEecCCc
Q 014433          370 HGGHTSKISDFSWNPCEDWVISSVAED--NILQIWQMAEN  407 (424)
Q Consensus       370 ~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~  407 (424)
                      .........++.|+|++++++.+++.-  -.+.+++..++
T Consensus       405 ~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~  444 (465)
T d1xfda1         405 DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK  444 (465)
T ss_dssp             TSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence            112334567899999999877665532  34666666544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.21  E-value=0.00035  Score=59.51  Aligned_cols=192  Identities=5%  Similarity=-0.003  Sum_probs=123.0

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCceeEEEecCCCCceEEE
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s  196 (424)
                      +..+..+.++++.+++. ++++ +.+ .+.++|..+        +.   ...+..     ....++.+.+.|+|. +.++
T Consensus        55 ~~~~~~~~~i~~~~dg~-l~va-~~~-gl~~~d~~t--------g~---~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~  119 (295)
T d2ghsa1          55 HALPFMGSALAKISDSK-QLIA-SDD-GLFLRDTAT--------GV---LTLHAELESDLPGNRSNDGRMHPSGA-LWIG  119 (295)
T ss_dssp             EECSSCEEEEEEEETTE-EEEE-ETT-EEEEEETTT--------CC---EEEEECSSTTCTTEEEEEEEECTTSC-EEEE
T ss_pred             EECCCCcEEEEEecCCC-EEEE-EeC-ccEEeeccc--------ce---eeEEeeeecCCCcccceeeEECCCCC-EEEE
Confidence            34567788999998875 5543 444 588889876        11   122221     112478888999887 4443


Q ss_pred             EeC----CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCC--CCee---
Q 014433          197 GSD----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--KPVQ---  267 (424)
Q Consensus       197 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~--~~~~---  267 (424)
                      ...    .+.-.+|.+..++       +..+...-...+.++|++++..++++-+..+.|..|++......  ....   
T Consensus       120 ~~~~~~~~~~g~l~~~~~g~-------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~  192 (295)
T d2ghsa1         120 TMGRKAETGAGSIYHVAKGK-------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  192 (295)
T ss_dssp             EEETTCCTTCEEEEEEETTE-------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             eccccccccceeEeeecCCc-------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe
Confidence            321    2334556554431       11111122346789999999988888888999999988643211  1111   


Q ss_pred             eeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEc-CCCCcEEEEEEC
Q 014433          268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN-PKNETILASCCL  338 (424)
Q Consensus       268 ~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~l~s~~~  338 (424)
                      ...........++++.+|. +.++.-..+.|..||..  ++.+..+......+++++|- |+.+.+++|...
T Consensus       193 ~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~--G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         193 DSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ccCcccccccceEEcCCCC-EEeeeeCCCceEEecCC--CcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            1122344578899999887 56666667889999964  67788887766789999996 676777777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.0027  Score=52.72  Aligned_cols=203  Identities=8%  Similarity=0.027  Sum_probs=127.5

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC  204 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  204 (424)
                      ...+.+|+|.+.+..++.+-...+.|+..++..          ......+......+.+|++...+..+..+-...+.|.
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g----------~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG----------GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSS----------CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc----------CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEE
Confidence            345778999987776776666778899888875          1222223333356788888766664445555678999


Q ss_pred             EEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCe--EEEEEcCCCCCCCCeeeeeccCCCeeEEEec
Q 014433          205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN  282 (424)
Q Consensus       205 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~  282 (424)
                      +.++.....      ..........+..++++|....++.+-...+.  |.-.++.....   .......-...+.++++
T Consensus       105 ~~~~dg~~~------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~---~~i~~~~~~~P~glaiD  175 (263)
T d1npea_         105 VAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFD  175 (263)
T ss_dssp             EEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEE
T ss_pred             EEecCCceE------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc---eeeeeecccccceEEEe
Confidence            999875432      11122223568899999988888766443333  44445544331   22222233466899999


Q ss_pred             CCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       283 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +.++.+..+-...+.|...|+.. ......+.+. ....+|++.  +..++.+-...+.|...|...+
T Consensus       176 ~~~~~lYw~d~~~~~I~~~~~~g-~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         176 AFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTE-EEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             ecCcEEEEEeCCCCEEEEEECCC-CCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            88887667766778999999875 2222223332 234678776  3356666667788888888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=0.0031  Score=52.33  Aligned_cols=228  Identities=7%  Similarity=-0.028  Sum_probs=138.5

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (424)
                      +.|+-.+++.....     ...+...+..+...+.+|+|.+....++.+-..++.|...+++....      ........
T Consensus        10 ~~I~~~~ld~~~~~-----~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~------~~v~~~~~   78 (263)
T d1npea_          10 GKIERLPLERNTMK-----KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP------TTIIRQDL   78 (263)
T ss_dssp             EEEEEEEESSSCBC-----GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC------EEEECTTC
T ss_pred             CeEEEEECCCcccc-----ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc------EEEEEecc
Confidence            46777776542111     11222334445556888999987774444445678898888875432      11122223


Q ss_pred             ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCc--EEEEECCC
Q 014433          228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKLFDLRK  305 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~--i~iwd~~~  305 (424)
                      ..+.++++...+..++.+-...+.|.+.++.....   ..........+..++.+|....++.+-...+.  |.--++..
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceE---EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence            46789999887788887777888999999986542   22222334578899999988876666443333  44445543


Q ss_pred             CCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          306 ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       306 ~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       ..........-.....+++.+.++.++.+-...+.|...++.....            ..+  ..+-. ...++++.  
T Consensus       156 -~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~------------~~v--~~~~~-~P~~lav~--  217 (263)
T d1npea_         156 -TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------------RKV--LEGLQ-YPFAVTSY--  217 (263)
T ss_dssp             -CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------------EEE--EECCC-SEEEEEEE--
T ss_pred             -CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe------------EEE--ECCCC-CcEEEEEE--
Confidence             2222222223356789999988776656656678898888865321            112  22322 23567775  


Q ss_pred             CCcEEEEEeCCCcEEEEecCCc
Q 014433          386 EDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +.++..+-...+.|...+..++
T Consensus       218 ~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         218 GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCEEEEEECCCCEEEEEECCCC
Confidence            4446667666778888887655

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=0.0032  Score=52.32  Aligned_cols=228  Identities=10%  Similarity=-0.002  Sum_probs=137.9

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014433          148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE  227 (424)
Q Consensus       148 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  227 (424)
                      ..|+-.++..           .....+......+.+++|.+....+..+=...+.|.-.+++........  ........
T Consensus        10 ~~I~~~~l~~-----------~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~--~~~~~~~~   76 (266)
T d1ijqa1          10 HEVRKMTLDR-----------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDI   76 (266)
T ss_dssp             SSEEEEETTS-----------CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--EEEECSSC
T ss_pred             CeEEEEECCC-----------CcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce--EEEEeCCC
Confidence            3588888876           1123344455677899999877644444345667777776543221111  11122223


Q ss_pred             ccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCC
Q 014433          228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKI  306 (424)
Q Consensus       228 ~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~-~dg~i~iwd~~~~  306 (424)
                      ..+..+++.+.+.+++.+-...+.|.+.++.....   .............++.+|...+++.+.. ..+.|.-.++.. 
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~---~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-  152 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-  152 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceE---EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC-
Confidence            45778999888888888878888999999986542   2333444567889999997776666643 234566666654 


Q ss_pred             CCcceEe-cCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014433          307 STALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC  385 (424)
Q Consensus       307 ~~~~~~~-~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  385 (424)
                       .....+ ...-...+.+++.+.+..+..+-...+.|...++.....            ..+...........++++.  
T Consensus       153 -s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~------------~~~~~~~~~~~~p~~lav~--  217 (266)
T d1ijqa1         153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILEDEKRLAHPFSLAVF--  217 (266)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEECTTTTSSEEEEEEE--
T ss_pred             -CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE------------EEEEeCCCcccccEEEEEE--
Confidence             333333 233356789999998876666666778898888864321            2222222222334567766  


Q ss_pred             CCcEEEEEeCCCcEEEEecCCc
Q 014433          386 EDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       386 ~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      +.+++.+-..++.|...+..++
T Consensus       218 ~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         218 EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCeEEEEECCCC
Confidence            3446666667777777766554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.0097  Score=49.28  Aligned_cols=209  Identities=7%  Similarity=0.014  Sum_probs=128.0

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCc
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ  202 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  202 (424)
                      .....+.+++|.+....+..+-...+.|+-.++.....      .......+......+.+|++.+.+.++..+-...+.
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~------~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~  100 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT  100 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC------CcceEEEEeCCCCCcceEEEeeccceEEEEecCCCE
Confidence            44556778999987776666655677787777654110      011122233333456678887767655555566788


Q ss_pred             EEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEe-CCCeEEEEEcCCCCCCCCeeee-eccCCCeeEEE
Q 014433          203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLA  280 (424)
Q Consensus       203 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~v~  280 (424)
                      |.+.++.....      .............++++|....++.+.. ..+.|.-.++....    ...+ ...-...+.++
T Consensus       101 I~v~~~~g~~~------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~----~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1         101 VSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGIT  170 (266)
T ss_dssp             EEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEE
T ss_pred             EEeEecCCceE------EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc----eecccccccceeeEEE
Confidence            99999875421      1223334456889999998777776643 34567666765533    2222 22335678999


Q ss_pred             ecCCCCeEEEEEeCCCcEEEEECCCCCCcceEec--CCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCC
Q 014433          281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI  350 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~  350 (424)
                      +++.+..+..+-...+.|...|+... .......  .......++++..  ..++.+-..++.|...+...+
T Consensus       171 iD~~~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         171 LDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred             eeccccEEEEecCCcCEEEEEECCCC-CEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCC
Confidence            99988877777777889999998752 2222222  2223456777773  356666667788877776654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.32  E-value=0.029  Score=46.10  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             CCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCC
Q 014433          274 SEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       274 ~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~  351 (424)
                      .......+.++  .++.....++  .|.++|+..  .....+..+. ......|+|+|+.++++  .++.|.++|+..+.
T Consensus       192 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g--~~~~~lt~~~-~~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g~  264 (281)
T d1k32a2         192 THVSSPVIVGH--RIYFITDIDGFGQIYSTDLDG--KDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEK  264 (281)
T ss_dssp             SCCEEEEEETT--EEEEEECTTSSCEEEEEETTS--CSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCC
T ss_pred             cccceeeeecc--ccceecccccccceEEEeCCC--CceEEeecCC-CcccccCcCCCCEEEEE--eCCEEEEEECCCCC
Confidence            34445555553  2344444443  577778775  2333343322 22334689999875553  36789999998764


Q ss_pred             c
Q 014433          352 E  352 (424)
Q Consensus       352 ~  352 (424)
                      .
T Consensus       265 ~  265 (281)
T d1k32a2         265 I  265 (281)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.16  E-value=0.0077  Score=52.52  Aligned_cols=195  Identities=12%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCceeEEEecCCC-CceEEEEeCCC------------
Q 014433          136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-EGHLLSGSDDA------------  201 (424)
Q Consensus       136 ~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-~~~l~s~~~dg------------  201 (424)
                      ||+.+++.-..+++|.+-|+..          .+....+. .....+..+...+.. ..+++.++.+.            
T Consensus        98 DGrylFVNDkan~RVAvIdl~~----------fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDV----------MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT----------TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             ceeEEEEEcCCCceEEEEECcc----------eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            6888888888899999999987          23222222 234456666655432 22566655422            


Q ss_pred             ------cEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCC--------------------------
Q 014433          202 ------QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--------------------------  249 (424)
Q Consensus       202 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--------------------------  249 (424)
                            .+.++|..+.+.      ..... -.+....+.++++|+.+++++...                          
T Consensus       168 ~~~y~~~~t~ID~~tm~V------~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEV------AWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             GG-EEEEEEEEETTTTEE------EEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             hhhcceEEEEEecCCceE------EEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                  255677765422      11111 234567889999999888766322                          


Q ss_pred             -----------CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---------
Q 014433          250 -----------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA---------  309 (424)
Q Consensus       250 -----------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---------  309 (424)
                                 +-+.+.|.+.......+..+. -......+..+|+|++++++|..+.++.++|+++....         
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~  319 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  319 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence                       223444544321111222222 22345678999999999999989999999999753211         


Q ss_pred             -ceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCC
Q 014433          310 -LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR  349 (424)
Q Consensus       310 -~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~  349 (424)
                       +..-....-.-...+|...| ....|.--|..|.-|++..
T Consensus       320 ~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         320 AVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             GEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecch
Confidence             11111123455678898887 4555666799999999854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.68  E-value=0.014  Score=50.92  Aligned_cols=204  Identities=13%  Similarity=0.138  Sum_probs=114.5

Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec--CCCcEEEEEeCC-----------------
Q 014433          189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL--RHEYLFGSVGDD-----------------  249 (424)
Q Consensus       189 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~s~~~d-----------------  249 (424)
                      +|+.+++.-..+++|.+.|+++.+....    ... .....+..++..+  ...+++ .++.+                 
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kI----i~i-Pn~~~~HG~r~~~~p~T~YV~-~~~e~~vP~pndg~~l~d~~~y  171 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAI----LEI-PNAKGIHGLRPQKWPRSNYVF-CNGEDETPLVNDGTNMEDVANY  171 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEE----EEC-SSCCSEEEEEECCSSBCSEEE-EEECSCEESSCSSSSTTCGG-E
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEE----Eec-CCCCCCceeecccCCCeEEEE-ccCccccccCCCCccccchhhc
Confidence            5664455556789999999987643211    111 1234455555544  334443 33331                 


Q ss_pred             -CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC---------------------------------
Q 014433          250 -QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD---------------------------------  295 (424)
Q Consensus       250 -g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d---------------------------------  295 (424)
                       +.+.++|..+.+.   ..... -......++++++|+++++++...                                 
T Consensus       172 ~~~~t~ID~~tm~V---~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         172 VNVFTAVDADKWEV---AWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EEEEEEEETTTTEE---EEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             ceEEEEEecCCceE---EEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence             2356788877553   22222 234567889999999766655321                                 


Q ss_pred             ----CcEEEEECCCC--CCcceEecCCCCCEEEEEEcCCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEE
Q 014433          296 ----KTVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI  369 (424)
Q Consensus       296 ----g~i~iwd~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  369 (424)
                          +.+.+.|.+..  ...+..+.. ......+..+|+|+++++++..+.++.|+|+++........   ..+...+..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~---~~~~~~~~~  323 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---ADPRSAVVA  323 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC---C-GGGGEEE
T ss_pred             cEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc---CCccccEEe
Confidence                22344444431  112222222 23456789999999888888889999999998653221000   001111211


Q ss_pred             EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       370 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      -......-..-+|...|. ...|---|..|.-|++...
T Consensus       324 e~elglgPLht~fd~~g~-aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         324 EPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHHH
T ss_pred             ecccCcCccccccCCCce-EEEEeeccceEEEEecchh
Confidence            111223345678888775 5666668999999998543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.24  Score=40.61  Aligned_cols=229  Identities=10%  Similarity=0.123  Sum_probs=136.1

Q ss_pred             EEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014433          131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA  210 (424)
Q Consensus       131 ~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  210 (424)
                      .-.+|..+ +||.-+ ..++.|||++.          ...+.... ....|.--.|-.+.  .|+... +..|+-|+++.
T Consensus        68 AIMhP~~~-IiALra-g~~LQiFnlet----------K~klks~~-~~e~VvfWkWis~~--~L~lVT-~taVYHW~~~g  131 (327)
T d1utca2          68 AIMNPASK-VIALKA-GKTLQIFNIEM----------KSKMKAHT-MTDDVTFWKWISLN--TVALVT-DNAVYHWSMEG  131 (327)
T ss_dssp             EEECSSSS-EEEEEE-TTEEEEEETTT----------TEEEEEEE-CSSCCCEEEESSSS--EEEEEC-SSEEEEEESSS
T ss_pred             hhcCCCCc-EEEEec-CCeEEEEehhH----------hhhhceEE-cCCCcEEEEecCCC--EEEEEc-CCceEEEcccC
Confidence            34567554 777655 56899999987          22222222 34567777787544  355444 35799999965


Q ss_pred             CCCCCcccceeeeecCC----ccEeeEEEecCCCcEEEEE------eCCCeEEEEEcCCCCCCCCeeeeeccCCCeeEEE
Q 014433          211 APKNKSLEAMQIFKVHE----GVVEDVAWHLRHEYLFGSV------GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA  280 (424)
Q Consensus       211 ~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~s~------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~  280 (424)
                      ..     .+.+.+..|.    ..|-.-..+++.+.++++|      +-.|.+.+|......    -+.+.+|......+.
T Consensus       132 ~s-----~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~----sQ~ieGhaa~F~~~~  202 (327)
T d1utca2         132 ES-----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPIEGHAASFAQFK  202 (327)
T ss_dssp             SC-----CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEECCSEEEEEEEC
T ss_pred             CC-----CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc----CccccceeeeeEEEE
Confidence            32     2444555443    4566677788887776655      224778899887643    345566655444444


Q ss_pred             ecCC--CCeEEEEEe---CCCcEEEEECCCCCC---c--ceE--e-c---CCCCCEEEEEEcCCCCcEEEEEECCCeEEE
Q 014433          281 FNPF--NEWILATGS---TDKTVKLFDLRKIST---A--LHT--F-D---SHKEEVFQVGWNPKNETILASCCLGRRLMV  344 (424)
Q Consensus       281 ~~~~--~~~~l~tg~---~dg~i~iwd~~~~~~---~--~~~--~-~---~h~~~v~~~~~sp~~~~~l~s~~~dg~i~i  344 (424)
                      ....  -..+|+.+.   ..+.++|.++.....   +  .+.  + .   ....-..++..++... ++..-+.-|.|++
T Consensus       203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~l  281 (327)
T d1utca2         203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHL  281 (327)
T ss_dssp             CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEE
T ss_pred             cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEE
Confidence            3321  112343332   236899999865321   1  111  1 1   1234566788888775 7888899999999


Q ss_pred             eeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014433          345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ  400 (424)
Q Consensus       345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~  400 (424)
                      ||+.++              .+++..+-....|.-.+-+..... +++....|.|.
T Consensus       282 yDleTg--------------t~i~~nRIs~~~iF~~a~~~~~~G-i~~VNr~GqVl  322 (327)
T d1utca2         282 YDLETG--------------TCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVL  322 (327)
T ss_dssp             EETTTC--------------CEEEEEECCSSCEEEEEEETTTTE-EEEEETTSEEE
T ss_pred             EEcccc--------------cEEEEeecCCCceEEeccCCCCce-EEEECCCCeEE
Confidence            999986              445555554555554444444443 44445666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.06  E-value=0.2  Score=42.58  Aligned_cols=163  Identities=12%  Similarity=0.064  Sum_probs=88.7

Q ss_pred             cEeeEEEecCCCcEEEEEe-----------CCCeEEEEEcCCCCCCCCeeeeeccC-----CCeeEEE--ecCCCCeEEE
Q 014433          229 VVEDVAWHLRHEYLFGSVG-----------DDQYLLIWDLRTPSVSKPVQSVVAHQ-----SEVNCLA--FNPFNEWILA  290 (424)
Q Consensus       229 ~v~~~~~~~~~~~~~~s~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~v~--~~~~~~~~l~  290 (424)
                      ...+|+..|++..+++++-           ..|.|.++|+.+.........+.+..     -....+.  -.+++...|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456777887755544321           24899999998765311111111110     0122222  2445654455


Q ss_pred             EEe---CCCcEEEEECCCCCCcce---EecC-CCCCEEEEEEcCCCCcEEEEEEC---C------------CeEEEeeCC
Q 014433          291 TGS---TDKTVKLFDLRKISTALH---TFDS-HKEEVFQVGWNPKNETILASCCL---G------------RRLMVWDLS  348 (424)
Q Consensus       291 tg~---~dg~i~iwd~~~~~~~~~---~~~~-h~~~v~~~~~sp~~~~~l~s~~~---d------------g~i~iwd~~  348 (424)
                      +..   ...+|.+|++......+.   .+.. .-...+.+++..++. +++|-..   +            +...+|...
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            543   345788888865332222   1221 224578888888874 6666321   0            112233222


Q ss_pred             CCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCc
Q 014433          349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN  407 (424)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~  407 (424)
                      ..              . .......-...+.++++|++++++++-...+.|++|++...
T Consensus       195 ~~--------------~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         195 PN--------------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SS--------------C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CC--------------c-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            21              1 11111122357899999999988888888999999998754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.97  E-value=0.46  Score=41.70  Aligned_cols=251  Identities=10%  Similarity=0.095  Sum_probs=128.7

Q ss_pred             eEEEecCCCCcEEEEEeCCC----eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeC-----
Q 014433          129 NRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-----  199 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----  199 (424)
                      ...+++|+++.++.+-+..|    .++++|+.+        +...+ ..+..  .....++|.+++..++.+.-.     
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t--------g~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG--------AKELP-DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGK  196 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTT--------TEEEE-EEEEE--ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCc--------ceecc-ccccc--ccccceEEcCCCCEEEEEEeccccCc
Confidence            34577999986555544444    899999988        21111 11221  122568999998865554321     


Q ss_pred             ----------CCcEEEEeCCCCCCCCcccceeeeecC--CccEeeEEEecCCCcEEEEEeC--CCe--EEEEEcCCCCCC
Q 014433          200 ----------DAQICLWDINAAPKNKSLEAMQIFKVH--EGVVEDVAWHLRHEYLFGSVGD--DQY--LLIWDLRTPSVS  263 (424)
Q Consensus       200 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~--dg~--i~i~d~~~~~~~  263 (424)
                                ...|..+.+.+....    ....+...  ...+..+..+++++.+++....  ++.  +.+.|+......
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~~----d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQSE----DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGG----CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccccCCcceEEEEECCCCccc----cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                      225777887665332    12223322  2346667788898887765542  333  445565543210


Q ss_pred             -----CCeeeeeccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCc-ceEec-CCCCCEEEEEEcCCCCcEE
Q 014433          264 -----KPVQSVVAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTA-LHTFD-SHKEEVFQVGWNPKNETIL  333 (424)
Q Consensus       264 -----~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~-~~~~~-~h~~~v~~~~~sp~~~~~l  333 (424)
                           ..............-+.. . +..+++....   ++.|...++...... ...+- .+...+..-.+...+..++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVTN-E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEEE-E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cccccceeEeecccccceEEEec-C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence                 011112222223333322 2 3334444332   467777777764322 23333 3444555444444444455


Q ss_pred             EEEECCCe--EEEeeCCCCCcccCCCCcCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCcc
Q 014433          334 ASCCLGRR--LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENI  408 (424)
Q Consensus       334 ~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vw~~~~~~  408 (424)
                      +....++.  |+++++..+..              ........+.|..+...++...+.++.+   .=.++.-+|+.++.
T Consensus       351 l~~~~~~~~~l~v~~~~~~~~--------------~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLATGAL--------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTEEEEEEEETTTCCE--------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEcCCEeEEEEEECCCCcE--------------EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            56556654  78888876432              1111222334555555565554444433   23678889998875


Q ss_pred             CC
Q 014433          409 YH  410 (424)
Q Consensus       409 ~~  410 (424)
                      ++
T Consensus       417 ~~  418 (430)
T d1qfma1         417 LE  418 (430)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.96  E-value=0.39  Score=40.72  Aligned_cols=195  Identities=12%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             eeEEEecCCCCcEEEEEe-----------CCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-----CceeEEEe--cCC
Q 014433          128 VNRARYMPQNPFLIATKT-----------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-----TEGYGLSW--SKF  189 (424)
Q Consensus       128 v~~~~~~p~~~~~latg~-----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~--~~~  189 (424)
                      .-.|...|++..++++|.           ..|.|.++|+.......       ....+.+..     -...++..  .++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~-------~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-------SELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCE-------EECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcc-------eEEEecCCCCCCcceeccceeEEEcCC
Confidence            345677787765555432           24899999987621111       011111110     12234443  344


Q ss_pred             CCceEEEEe---CCCcEEEEeCCCCCCCCcccceeeeec-CCccEeeEEEecCCCcEEEEEeC---------------CC
Q 014433          190 KEGHLLSGS---DDAQICLWDINAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGD---------------DQ  250 (424)
Q Consensus       190 ~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~---------------dg  250 (424)
                      +..+|++..   ...+|-+|++....  ..+.....+.. .....++++...++. +++|-..               -+
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~--~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTT--TEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCC--CeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCC
Confidence            554565553   35678888876542  22222222221 224578888888875 5545210               12


Q ss_pred             eEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-EecCCCCCEEEEEEcCCC
Q 014433          251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~h~~~v~~~~~sp~~  329 (424)
                      ...+|....+.    .......-...+.|+++|+++.++++-+..+.|+.|++...+.... ....-....-.+.+.+.+
T Consensus       187 ~g~v~~~~~~~----~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         187 WSFVTYYSPND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             CEEEEEECSSC----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             ceeEEEEcCCc----eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence            23344433322    2222233456889999999998888888899999999976332211 111224556788887654


Q ss_pred             CcEEEEE
Q 014433          330 ETILASC  336 (424)
Q Consensus       330 ~~~l~s~  336 (424)
                      ..+.+++
T Consensus       263 g~lwva~  269 (340)
T d1v04a_         263 GDLWVGC  269 (340)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            4445444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.33  E-value=0.42  Score=40.93  Aligned_cols=78  Identities=9%  Similarity=-0.004  Sum_probs=45.6

Q ss_pred             ccCCceeEEEecCCCCcEEEEEeCC-CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCC-
Q 014433          123 NHDGEVNRARYMPQNPFLIATKTVS-AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-  200 (424)
Q Consensus       123 ~h~~~v~~~~~~p~~~~~latg~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-  200 (424)
                      .|.......++.+++. +++.|+.+ ..+.+||..+        ..+.....+.. ...-.+.+..+++. +++.|+.+ 
T Consensus        73 ~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~--------~~w~~~~~~~~-~r~~~~~~~~~dG~-v~v~GG~~~  141 (387)
T d1k3ia3          73 KHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS--------DSWIPGPDMQV-ARGYQSSATMSDGR-VFTIGGSWS  141 (387)
T ss_dssp             SCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGG--------TEEEECCCCSS-CCSSCEEEECTTSC-EEEECCCCC
T ss_pred             CcccceeEEEEecCCc-EEEeecCCCcceeEecCcc--------Ccccccccccc-cccccceeeecCCc-eeeeccccc
Confidence            4444455667888886 67776544 6899999876        22221111111 11123456666676 66666542 


Q ss_pred             -----CcEEEEeCCCC
Q 014433          201 -----AQICLWDINAA  211 (424)
Q Consensus       201 -----g~i~iwd~~~~  211 (424)
                           ..+.+||..+.
T Consensus       142 ~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         142 GGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SSSCCCCEEEEETTTT
T ss_pred             cccccceeeeecCCCC
Confidence                 35889998765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.96  E-value=0.15  Score=44.05  Aligned_cols=96  Identities=18%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCC-CcEEEEECCCCC-CcceEecCCCCCEEEEEEcCCC
Q 014433          252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD-KTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKN  329 (424)
Q Consensus       252 i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~d-g~i~iwd~~~~~-~~~~~~~~h~~~v~~~~~sp~~  329 (424)
                      +.+||+.++.-.........+.......++.+++. +++.|+.+ ..+.+||..+.. .....+.. ...-..++..+++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCcccccccccc-cccccceeeecCC
Confidence            67899998763222222223333445667888887 67777655 589999987621 11111111 1122456777788


Q ss_pred             CcEEEEEECC------CeEEEeeCCCC
Q 014433          330 ETILASCCLG------RRLMVWDLSRI  350 (424)
Q Consensus       330 ~~~l~s~~~d------g~i~iwd~~~~  350 (424)
                      . +++.++.+      ..+.+||..+.
T Consensus       132 ~-v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 R-VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             C-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             c-eeeeccccccccccceeeeecCCCC
Confidence            5 67676642      35889998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.11  E-value=1.2  Score=36.38  Aligned_cols=201  Identities=15%  Similarity=0.166  Sum_probs=119.9

Q ss_pred             EeccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC----CceeEEEecCCCCceEEE
Q 014433          121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS----TEGYGLSWSKFKEGHLLS  196 (424)
Q Consensus       121 ~~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s  196 (424)
                      ....+.+|.-=+|-.+..  |+.-+ +..|+-|+++..         ..|...+..|.    ..|..-..+++.+.++++
T Consensus        98 s~~~~e~VvfWkWis~~~--L~lVT-~taVYHW~~~g~---------s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~  165 (327)
T d1utca2          98 AHTMTDDVTFWKWISLNT--VALVT-DNAVYHWSMEGE---------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLT  165 (327)
T ss_dssp             EEECSSCCCEEEESSSSE--EEEEC-SSEEEEEESSSS---------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEE
T ss_pred             eEEcCCCcEEEEecCCCE--EEEEc-CCceEEEcccCC---------CCchhhhhhcccccCceEEEEEECCCCCEEEEE
Confidence            344566777777776553  44433 457999999641         24555555554    456677777777744444


Q ss_pred             E------eCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecC--CCcEEEEEe---CCCeEEEEEcCCCCCC-C
Q 014433          197 G------SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR--HEYLFGSVG---DDQYLLIWDLRTPSVS-K  264 (424)
Q Consensus       197 ~------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~---~dg~i~i~d~~~~~~~-~  264 (424)
                      |      .-.|.+.+|.++..       ..+.+.+|.+....+.....  ...+|+-+.   ..+.++|.++..+... .
T Consensus       166 GI~~~~~~i~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~  238 (327)
T d1utca2         166 GISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ  238 (327)
T ss_dssp             EEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCC
T ss_pred             eEecCCCceeEEEEEEEeccC-------cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCC
Confidence            3      12467889998754       34556777665555544211  123444332   2368999999774321 1


Q ss_pred             Ce--ee--e----eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433          265 PV--QS--V----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       265 ~~--~~--~----~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~  336 (424)
                      +.  ..  +    ....+-..++..++.-. ++..-+.-|.|++||+.+ +.++..-+-....|...+-+..... +++.
T Consensus       239 ~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleT-gt~i~~nRIs~~~iF~~a~~~~~~G-i~~V  315 (327)
T d1utca2         239 PFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLET-GTCIYMNRISGETIFVTAPHEATAG-IIGV  315 (327)
T ss_dssp             CCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEETTTTE-EEEE
T ss_pred             CCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEccc-ccEEEEeecCCCceEEeccCCCCce-EEEE
Confidence            11  11  1    11234456777777666 677788999999999999 6777766666677765555554433 3344


Q ss_pred             ECCCeEE
Q 014433          337 CLGRRLM  343 (424)
Q Consensus       337 ~~dg~i~  343 (424)
                      ..+|.|.
T Consensus       316 Nr~GqVl  322 (327)
T d1utca2         316 NRKGQVL  322 (327)
T ss_dssp             ETTSEEE
T ss_pred             CCCCeEE
Confidence            4566553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.27  E-value=3.1  Score=37.71  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCe--eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCCE-EEEEEc
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEV--NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV-FQVGWN  326 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~v-~~~~~s  326 (424)
                      |.|.-||+.+++.   +-.... ..+.  -.++.  .+. ++++|+.||.++.||.++ ++.+-.+....... .-+.|.
T Consensus       457 G~l~AiD~~tGk~---~W~~~~-~~p~~gg~lst--agg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~  528 (573)
T d1kb0a2         457 GRLLAWDPVAQKA---AWSVEH-VSPWNGGTLTT--AGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYM  528 (573)
T ss_dssp             EEEEEEETTTTEE---EEEEEE-SSSCCCCEEEE--TTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEE
T ss_pred             ccEEEeCCCCCce---EeeecC-CCCCCCceEEE--cCC-EEEEECCCCeEEEEECCC-CcEeEEEECCCCccccCEEEE
Confidence            4677777777654   211111 1111  12222  355 677899999999999999 77777766432211 114555


Q ss_pred             CCCCcEEEEEEC
Q 014433          327 PKNETILASCCL  338 (424)
Q Consensus       327 p~~~~~l~s~~~  338 (424)
                      .+|+++++..+.
T Consensus       529 ~~GkQYv~v~~G  540 (573)
T d1kb0a2         529 VDGRQYVSVAVG  540 (573)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEeC
Confidence            678766665544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.76  E-value=4  Score=34.21  Aligned_cols=134  Identities=14%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             CceeEEEe--cCC-CCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEE
Q 014433          179 TEGYGLSW--SKF-KEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI  254 (424)
Q Consensus       179 ~~v~~l~~--~~~-~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  254 (424)
                      ..++++|+  ++. +..++++...+|.+..|.+...... .....++.+. -...+..|.+.+....|+ .+-.+.-+..
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Ly-isEE~~Giw~  205 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLY-IAEEDEAIWK  205 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEE-EEETTTEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEE-EecCccceEE
Confidence            35777777  554 3335677788999999987543221 2223344444 356789999999888777 5566666666


Q ss_pred             EEcCCCCCCCCee--eee--ccCCCeeEEEec--CCCC-eEEEEEeCCCcEEEEECCCCCCcceEec
Q 014433          255 WDLRTPSVSKPVQ--SVV--AHQSEVNCLAFN--PFNE-WILATGSTDKTVKLFDLRKISTALHTFD  314 (424)
Q Consensus       255 ~d~~~~~~~~~~~--~~~--~~~~~v~~v~~~--~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~  314 (424)
                      ++...........  ...  .....+..|+.-  .++. ++|++.-.+.+..+||...+...+..|.
T Consensus       206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            6654322111111  111  134566667643  2333 6676666788999999887555555543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.48  E-value=4.3  Score=34.04  Aligned_cols=194  Identities=9%  Similarity=0.169  Sum_probs=106.5

Q ss_pred             ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEec----CC-CcEEEEEe-C-C--CeEEEEEcCCCCC
Q 014433          192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL----RH-EYLFGSVG-D-D--QYLLIWDLRTPSV  262 (424)
Q Consensus       192 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~-~~~~~s~~-~-d--g~i~i~d~~~~~~  262 (424)
                      .+++...+.+-|.+||++.. .      +..+  ..+.++.|..-.    .+ ..-+++++ . +  .+|.+|.+.....
T Consensus        41 SlI~gTdK~~Gl~vYdL~G~-~------l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEGK-M------LHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             CEEEEEETTSCCEEEETTCC-E------EEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             cEEEEEcCcCCEEEEcCCCc-E------EEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            36777777777999999632 1      2222  124555544331    11 11233333 2 2  3577887753221


Q ss_pred             CCCeeeeec-------cCCCeeEEEe--cCC-CCeEEEEEeCCCcEEEEECCCCC------CcceEecCCCCCEEEEEEc
Q 014433          263 SKPVQSVVA-------HQSEVNCLAF--NPF-NEWILATGSTDKTVKLFDLRKIS------TALHTFDSHKEEVFQVGWN  326 (424)
Q Consensus       263 ~~~~~~~~~-------~~~~v~~v~~--~~~-~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~h~~~v~~~~~s  326 (424)
                        .+..+..       ....+..+|+  ++. +...+++...+|.+..|.+...+      ..++.+.. ...+-.|.+.
T Consensus       112 --~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvD  188 (353)
T d1h6la_         112 --TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAAD  188 (353)
T ss_dssp             --EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEE
T ss_pred             --ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEe
Confidence              1221111       1224566665  664 44456667778999888774211      23445544 5678899999


Q ss_pred             CCCCcEEEEEECCCeEEEeeCCCCCcccCCCCcCCCCCeeeEEEcC--CCCCcceEEeC--CCC-CcEEEEEeCCCcEEE
Q 014433          327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--HTSKISDFSWN--PCE-DWVISSVAEDNILQI  401 (424)
Q Consensus       327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~--~~~-~~~l~s~~~dg~i~v  401 (424)
                      +... .|..+-.+..|..++......         ....++....+  ...-+-.++.-  .++ .|+|+|.-.+++..|
T Consensus       189 de~~-~LyisEE~~Giw~~~a~~~~~---------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         189 DEYG-SLYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             TTTT-EEEEEETTTEEEEEESSTTSC---------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCCC-cEEEecCccceEEEEeccCCC---------ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            8876 466777766555555432111         01122322222  24456666643  333 378888888999999


Q ss_pred             EecCCc
Q 014433          402 WQMAEN  407 (424)
Q Consensus       402 w~~~~~  407 (424)
                      |+....
T Consensus       259 ydr~~~  264 (353)
T d1h6la_         259 YERQGQ  264 (353)
T ss_dssp             EESSTT
T ss_pred             EecCCC
Confidence            998763

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.96  E-value=4.7  Score=34.63  Aligned_cols=160  Identities=10%  Similarity=0.037  Sum_probs=83.1

Q ss_pred             CCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee----eecCCccEeeEEEecCCCcEEEEEeCC---
Q 014433          177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI----FKVHEGVVEDVAWHLRHEYLFGSVGDD---  249 (424)
Q Consensus       177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~d---  249 (424)
                      -.+.|.+|+++|..+++++++...|-|  |.-..+.  ...+.+..    .......+.+|+++|.++..+..+..+   
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG--~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~   85 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGT--SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG   85 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCE--EEEETTT--TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCE--EEEECCC--CceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence            456789999999998888888876654  3222221  22221111    111234688999999876666555422   


Q ss_pred             -CeEEEEEcCC-CCCCCCeeee------eccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEe------cC
Q 014433          250 -QYLLIWDLRT-PSVSKPVQSV------VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF------DS  315 (424)
Q Consensus       250 -g~i~i~d~~~-~~~~~~~~~~------~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------~~  315 (424)
                       ....||--.. ++....+...      ......+..|+++|.+...+.+++.++-|  |--...++--...      ..
T Consensus        86 ~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~~  163 (427)
T d2ebsa1          86 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFT  163 (427)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCCC
T ss_pred             CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCccccc
Confidence             1123443332 2211111100      01123456788999877667777665544  3222223222221      11


Q ss_pred             CCCCEEEEEEcCCCCcEEEE-EECCCeE
Q 014433          316 HKEEVFQVGWNPKNETILAS-CCLGRRL  342 (424)
Q Consensus       316 h~~~v~~~~~sp~~~~~l~s-~~~dg~i  342 (424)
                      ....+..+.++|..+..|.+ +...+.|
T Consensus       164 ~~~~~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         164 NGIGYTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             SSSCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             CCccceEEEecccccceeeeeeeecccc
Confidence            23457889999976554544 3333334

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.56  E-value=6.2  Score=35.47  Aligned_cols=20  Identities=0%  Similarity=0.105  Sum_probs=17.9

Q ss_pred             EEEEEECCCeEEEeeCCCCC
Q 014433          332 ILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ++++|+.||.++.+|.++++
T Consensus       471 lVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         471 LVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             EEEEECCCCcEEEEECCCCc
Confidence            67789999999999999974

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.41  E-value=1.3  Score=38.45  Aligned_cols=164  Identities=9%  Similarity=0.008  Sum_probs=82.9

Q ss_pred             cCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEE----EecCCCceeEEEecCCCCceEEEEeC
Q 014433          124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR----LRGHSTEGYGLSWSKFKEGHLLSGSD  199 (424)
Q Consensus       124 h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~  199 (424)
                      -.+.|.+|+++|.++.++.+++..|-|..-.-..        ..+.++..    .......+.+|+++|..+..+..+..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG--------~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg   81 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--------SKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG   81 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--------TEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCC--------CceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEec
Confidence            4578999999999888888888766554332111        11111100    01123457899999987766666542


Q ss_pred             C----CcEEEEeCCCCCCCCcccceeee------ecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCee--
Q 014433          200 D----AQICLWDINAAPKNKSLEAMQIF------KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--  267 (424)
Q Consensus       200 d----g~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--  267 (424)
                      +    ....||.-..+.  .+...+...      ......+..+.++|.+...+.+++.++-|.. ....+.....+.  
T Consensus        82 ~~~~~~~~gi~~S~DgG--~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~  158 (427)
T d2ebsa1          82 RYVGDEWAAFYVSEDRG--QSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSI  158 (427)
T ss_dssp             SCTTSSCCEEEEESSTT--SEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTS
T ss_pred             cccCCcCccEEEeCCCC--ccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccC
Confidence            2    113345333322  111111100      0012345678899987766656665554431 333333211111  


Q ss_pred             -eeeccCCCeeEEEecCCCCeEEE-EEeCCCcE
Q 014433          268 -SVVAHQSEVNCLAFNPFNEWILA-TGSTDKTV  298 (424)
Q Consensus       268 -~~~~~~~~v~~v~~~~~~~~~l~-tg~~dg~i  298 (424)
                       ........+..+.++|.....+. ++...+.|
T Consensus       159 ~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         159 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             SCCCCSSSCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred             cccccCCccceEEEecccccceeeeeeeecccc
Confidence             11112334788999887654443 34333334

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.09  E-value=4.5  Score=31.04  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=82.5

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCceeEEEecCCCCceEEEE
Q 014433          125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STEGYGLSWSKFKEGHLLSG  197 (424)
Q Consensus       125 ~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~  197 (424)
                      ..++.-+...-++++++.+|+....+.+|-++.        +..+.+..+.+.       ..-|..+.+-.-++.-|+++
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYvieg--------GklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDG--------GGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET--------TEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeC--------CceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence            333444444446777888998888888888876        333333333322       22344444433232235555


Q ss_pred             eC-CCcEEEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeC---CCeEEEEEcCCCCCCCCeeeeec--
Q 014433          198 SD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVA--  271 (424)
Q Consensus       198 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---dg~i~i~d~~~~~~~~~~~~~~~--  271 (424)
                      .. .|.+++++..                 .+.++.....+.++ + +++..   .....-+|+++++.    ..+.-  
T Consensus       173 dl~SG~lri~tpk-----------------eGS~~~ay~~~gnK-V-~sdyEt~gEsywit~D~~s~~y----erve~P~  229 (313)
T d2hu7a1         173 NLSSGGLRVFDSG-----------------EGSFSSASISPGMK-V-TAGLETAREARLVTVDPRDGSV----EDLELPS  229 (313)
T ss_dssp             ETTTEEEEEECCS-----------------SEEEEEEEECTTSC-E-EEEEEESSCEEEEEECTTTCCE----EECCCSS
T ss_pred             ecccCCEEEecCC-----------------CCcccceeEccCce-e-eeccCCCCceEEEEEecccCce----eeeecCc
Confidence            44 6667776653                 45566666666554 3 34321   12222457776542    22211  


Q ss_pred             ------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC
Q 014433          272 ------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDL  303 (424)
Q Consensus       272 ------~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~  303 (424)
                            ....|+-+-+.|+++ +++.+-.||.-++|+-
T Consensus       230 kd~~sy~p~~I~~~~Y~Pdd~-L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         230 KDFSSYRPTAITWLGYLPDGR-LAVVARREGRSAVFID  266 (313)
T ss_dssp             CHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEEEEET
T ss_pred             ccceeecceEEEeeeeCCCCc-EEEEEecCCchheeec
Confidence                  123566677999998 6788889999999973

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.08  E-value=8.6  Score=34.49  Aligned_cols=54  Identities=11%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             CCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC-EEEEEEcCCCCcEEEEEECCC
Q 014433          285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPKNETILASCCLGR  340 (424)
Q Consensus       285 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~l~s~~~dg  340 (424)
                      +. ++++|+.||.++.+|.++ ++.+-++...... -.-+.+..+|+++++..+..|
T Consensus       469 gg-lVF~G~~dg~l~A~Da~t-Ge~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g  523 (560)
T d1kv9a2         469 GN-LVFQGTAAGQMHAYSADK-GEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG  523 (560)
T ss_dssp             TT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CC-EEEEECCCCcEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence            44 677899999999999999 7777776643221 112455567877776655443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.08  E-value=9  Score=34.54  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             CeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCCC-EEEEEEcCC
Q 014433          250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPK  328 (424)
Q Consensus       250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~~-v~~~~~sp~  328 (424)
                      |.|.-+|+.+++.   +-.... ..++..-.....+. ++++|+.||.++.+|.++ ++.+-.+...... -.-+.+..+
T Consensus       466 G~l~AiD~~TG~i---~W~~~~-~~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKV---VWEHKE-HLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKS-GKELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCE---EEEEEE-SSCCCSCCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEET
T ss_pred             CeEEEEcCCCCcE---EeecCC-CCCCccceeEEcCC-eEEEeCCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEEC
Confidence            5677788877764   222111 12222111222355 677899999999999999 7877777643221 122566778


Q ss_pred             CCcEEEEEE
Q 014433          329 NETILASCC  337 (424)
Q Consensus       329 ~~~~l~s~~  337 (424)
                      |+++++...
T Consensus       540 G~qYv~i~a  548 (582)
T d1flga_         540 GEQYLGVTV  548 (582)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            877766544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.67  E-value=9.5  Score=34.31  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=49.4

Q ss_pred             CCeEEEEEcCCCCCCCCeeeeeccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceEecCCCC-CEEEEEEcC
Q 014433          249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-EVFQVGWNP  327 (424)
Q Consensus       249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~h~~-~v~~~~~sp  327 (424)
                      .|.|.-+|+++++.   +-... ...+..+-...-.+. ++++|+.||.++.+|.++ ++.+-.+..... .-.-+.|..
T Consensus       443 ~G~l~AiD~~TG~~---~W~~~-~~~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~t-Ge~lW~~~l~~~~~a~P~ty~~  516 (571)
T d2ad6a1         443 MGQIRAFDLTTGKA---KWTKW-EKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKD-GKELWNFKMPSGGIGSPMTYSF  516 (571)
T ss_dssp             CEEEEEECTTTCCE---EEEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEE
T ss_pred             cccEEEeccCCCce---eeEcC-CCCCCCcceeEecCC-EEEEECCCCeEEEEECCC-CcEEEEEECCCCceecceEEEE
Confidence            46788888888774   21111 111111101111244 677899999999999999 777766654221 122256666


Q ss_pred             CCCcEEEEEEC
Q 014433          328 KNETILASCCL  338 (424)
Q Consensus       328 ~~~~~l~s~~~  338 (424)
                      +|++++++...
T Consensus       517 dGkqYi~v~~g  527 (571)
T d2ad6a1         517 KGKQYIGSMYG  527 (571)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEec
Confidence            88877766554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=6.2  Score=31.36  Aligned_cols=25  Identities=4%  Similarity=0.052  Sum_probs=16.3

Q ss_pred             CCCcEEEEEeCCC-----cEEEEecCCccCC
Q 014433          385 CEDWVISSVAEDN-----ILQIWQMAENIYH  410 (424)
Q Consensus       385 ~~~~~l~s~~~dg-----~i~vw~~~~~~~~  410 (424)
                      +++ +++.|+.++     .+.+||+.++...
T Consensus       242 ~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~  271 (288)
T d1zgka1         242 QGR-IYVLGGYDGHTFLDSVECYDPDTDTWS  271 (288)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCE-EEEEecCCCCeecceEEEEECCCCEEE
Confidence            455 677766544     3778888877543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.03  E-value=10  Score=32.94  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             EecCCCceeEEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc--eeeeecCCccEeeEEEecC---CCcEEEE
Q 014433          174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA--MQIFKVHEGVVEDVAWHLR---HEYLFGS  245 (424)
Q Consensus       174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~~~~s  245 (424)
                      +...-...++|+|.|++. +|++--..|.|++++..++........  +.....-......|+++|+   +..++++
T Consensus        22 ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          22 ILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            333345678999999987 555543479999998766533111100  0001112356789999985   3445543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.96  E-value=9.6  Score=32.69  Aligned_cols=211  Identities=14%  Similarity=0.085  Sum_probs=105.0

Q ss_pred             eEEEecCCCCcEEEEEeC---------------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC--CceeEEEecCCCC
Q 014433          129 NRARYMPQNPFLIATKTV---------------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS--TEGYGLSWSKFKE  191 (424)
Q Consensus       129 ~~~~~~p~~~~~latg~~---------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~  191 (424)
                      ..++|.+++..++.+.-.               ...|+.+.+.+.        .......+....  ..+..+..++++.
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~--------~~~d~~v~~e~d~~~~~~~~~~s~d~~  245 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD--------QSEDILCAEFPDEPKWMGGAELSDDGR  245 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC--------GGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCC--------ccccccccccccCCceEEeeeccCCcc
Confidence            568899998866665421               236777887762        222223333332  2355677788887


Q ss_pred             ceEEEEeC--CCc--EEEEeCCCCCCC--CcccceeeeecCCccEeeEEEecCCCcEEEEEe---CCCeEEEEEcCCCCC
Q 014433          192 GHLLSGSD--DAQ--ICLWDINAAPKN--KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSV  262 (424)
Q Consensus       192 ~~l~s~~~--dg~--i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~  262 (424)
                      .+++....  ++.  +.+.++......  .................-+. +. +..+++...   .++.|...++.....
T Consensus       246 ~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~  323 (430)
T d1qfma1         246 YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NE-GTVFTFKTNRHSPNYRLINIDFTDPEE  323 (430)
T ss_dssp             EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EE-TTEEEEEECTTCTTCEEEEEETTBCCG
T ss_pred             eeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cC-CceeecccCcccccceeEEecCCCCcc
Confidence            44443332  333  344454432211  01111111222222233222 22 333443332   346777788776542


Q ss_pred             CCCeeee-eccCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEEEC-
Q 014433          263 SKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL-  338 (424)
Q Consensus       263 ~~~~~~~-~~~~~~v~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~~~-  338 (424)
                       .....+ ..+...+..-.+...+.++++....++  .|+++++.. +..........+.|..+...+....+.++-+. 
T Consensus       324 -~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~  401 (430)
T d1qfma1         324 -SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSF  401 (430)
T ss_dssp             -GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEEEEEECCTTCSEEEEEEECS
T ss_pred             -ccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCC-CcEEEecCCCCceEeeccCCCCCCEEEEEEcCC
Confidence             112233 334444544334333455555655665  588899886 44444444444566666655665544444332 


Q ss_pred             --CCeEEEeeCCCCC
Q 014433          339 --GRRLMVWDLSRID  351 (424)
Q Consensus       339 --dg~i~iwd~~~~~  351 (424)
                        =.++.-+|+.++.
T Consensus       402 ~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         402 LSPGIIYHCDLTKEE  416 (430)
T ss_dssp             SCCCEEEEEETTSSS
T ss_pred             CCCCeEEEEECCCCC
Confidence              2567778887653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.18  E-value=9.8  Score=32.10  Aligned_cols=186  Identities=10%  Similarity=0.033  Sum_probs=98.6

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCeEEEEeCCCCCC---CCCCCCCCCCcEEEecCCCceeEEEecCCCCceEEEEeCCCcE
Q 014433          127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS---KPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI  203 (424)
Q Consensus       127 ~v~~~~~~p~~~~~latg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  203 (424)
                      ..+-++.++... ++++|+.++ +.|........   .........+...    -..|..++|+.  . .|+.. .++.+
T Consensus        38 ~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~--d-~l~v~-~~~~l  107 (381)
T d1xipa_          38 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHG--D-QVLVS-TRNAL  107 (381)
T ss_dssp             CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEET--T-EEEEE-ESSEE
T ss_pred             ccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeC--C-EEEEE-eCCCE
Confidence            355678887654 777777664 66776432100   0000011222221    23588899974  3 34443 45678


Q ss_pred             EEEeCCCCCCCCcccceeeeecCCccEeeEEEecCCCcEEEEEeCCCeEEEEEcCCCCCCCCeee---eeccCCCeeEEE
Q 014433          204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS---VVAHQSEVNCLA  280 (424)
Q Consensus       204 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~v~~v~  280 (424)
                      ..+++..-..      ......-..++..+.++|..   ++....+|.+.++++..... .++..   -..-.+.+.+++
T Consensus       108 ~~~~~~~l~~------~~~~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~v~  177 (381)
T d1xipa_         108 YSLDLEELSE------FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKST-KQLAQNVTSFDVTNSQLAVL  177 (381)
T ss_dssp             EEEESSSTTC------EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCE-EEEEESEEEEEECSSEEEEE
T ss_pred             EEEEeecccc------ccccccccccccceecCCce---eEEEecCCCEEEEEeccCcc-ccccCCcceEEecCCceEEE
Confidence            8888765321      22222335578888888753   44667789999999988653 11110   011246688888


Q ss_pred             ecCCCCeEEEEEeCCCcEEE-EECCCCCCcceEecCCCCCEEEEEEcCCCCcEEEEE
Q 014433          281 FNPFNEWILATGSTDKTVKL-FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC  336 (424)
Q Consensus       281 ~~~~~~~~l~tg~~dg~i~i-wd~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~l~s~  336 (424)
                      |++.+. .++++..++ ..+ -++... ..+.........|.+|.|-.+.. ++++-
T Consensus       178 ws~kgk-q~v~~~g~~-~q~k~~i~~~-~~~~~p~~~~~~v~sI~WL~~~~-F~vvy  230 (381)
T d1xipa_         178 LKDRSF-QSFAWRNGE-MEKQFEFSLP-SELEELPVEEYSPLSVTILSPQD-FLAVF  230 (381)
T ss_dssp             ETTSCE-EEEEEETTE-EEEEEEECCC-HHHHTSCTTTSEEEEEEESSSSE-EEEEE
T ss_pred             EeCCcE-EEEEeCCCc-eeeccCCCCc-cccCCCcCCCcceeEEEEecCce-EEEEE
Confidence            887665 466664322 221 122221 11111112345788999987763 44444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=84.39  E-value=14  Score=33.15  Aligned_cols=20  Identities=10%  Similarity=0.185  Sum_probs=17.9

Q ss_pred             EEEEEECCCeEEEeeCCCCC
Q 014433          332 ILASCCLGRRLMVWDLSRID  351 (424)
Q Consensus       332 ~l~s~~~dg~i~iwd~~~~~  351 (424)
                      ++++|+.||.++.+|.++++
T Consensus       490 lVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         490 VVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             EEEEECCCCeEEEEECCCCc
Confidence            67789999999999999974

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.21  E-value=16  Score=31.56  Aligned_cols=35  Identities=9%  Similarity=0.171  Sum_probs=26.0

Q ss_pred             eccCCceeEEEecCCCCcEEEEEeCCCeEEEEeCCC
Q 014433          122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK  157 (424)
Q Consensus       122 ~~h~~~v~~~~~~p~~~~~latg~~dg~v~iw~~~~  157 (424)
                      ...-...++|+|.|++. ++++--..|.|++++...
T Consensus        23 a~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~   57 (450)
T d1crua_          23 LSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPES   57 (450)
T ss_dssp             ECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTT
T ss_pred             ECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCC
Confidence            33446778999999996 666644479999998665