Citrus Sinensis ID: 014444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccc
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQaygaqqyqrigTQTYTAIFCLFLVCFPLSFLWIYAGKLLVligqdpqishEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIpicwslvyksglgnlGGALAIGISNWLNVTFLAIYMKFSTacaesrvpiSMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSgllpnpqleTSVLSVCLNTIQTLYAIPYGLGAAVSTRVSnelgagnvqKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISkgrsladnrvvce
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKareriskgrsladnrvvce
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSglgnlggalaigiSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
**LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE************************
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASK*******************
MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE*************RSLADNRVVCE
*DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGR**********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
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MDLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query424 2.2.26 [Sep-21-2011]
Q9SIA1477 MATE efflux family protei no no 0.919 0.817 0.521 1e-113
Q8RWF5483 MATE efflux family protei no no 0.908 0.797 0.516 1e-113
Q8GXM8476 MATE efflux family protei no no 0.905 0.806 0.512 1e-111
Q9SIA4476 MATE efflux family protei no no 0.924 0.823 0.5 1e-110
Q9SIA5476 MATE efflux family protei no no 0.905 0.806 0.497 1e-107
Q9SIA3476 MATE efflux family protei no no 0.924 0.823 0.488 1e-107
Q9LUH3469 MATE efflux family protei no no 0.886 0.801 0.372 1e-72
Q9LUH2477 MATE efflux family protei no no 0.889 0.790 0.371 3e-72
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.900 0.753 0.364 2e-64
Q10085455 Uncharacterized transport yes no 0.905 0.843 0.310 8e-46
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function desciption
 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/391 (52%), Positives = 266/391 (68%), Gaps = 1/391 (0%)

Query: 26  GMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQI 85
           G+  ALETLCGQAYGA+QY +IGT T++AI     +   +S LW Y  KL V +GQDP I
Sbjct: 87  GLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDI 146

Query: 86  SHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG 145
           S   G + + L+PAL A A  QPL R+ Q+Q L++P+   +   L  HIP+C  LVY  G
Sbjct: 147 SKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFG 206

Query: 146 LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMI 205
           LG+ G ALAIG+S W NV  LA+Y++FS+AC ++R  +S +    + +FF + IPSA M 
Sbjct: 207 LGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMT 266

Query: 206 CLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGN 265
            +EW  FELLIL SGLLPNP+LETSVLS+CL T      IP G+GAA STR+SNELGAGN
Sbjct: 267 TIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNELGAGN 326

Query: 266 VQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIM 325
            + AR+AV+A IF+   E  + S  LF  + +FGY FSN K+VVDYVT ++ L+CLS ++
Sbjct: 327 PEVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVTELSSLLCLSFMV 386

Query: 326 DSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFT 385
           D    V  GVARG GWQNI A+ N+ A+YL G P    LGFW    G+GLWIG+  G+  
Sbjct: 387 DGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGKGLWIGVIVGSTA 446

Query: 386 QTLLLGIITTCTNWEKQASKARERISKGRSL 416
           Q ++L I+T C +WE+QA+KARERI  GR+L
Sbjct: 447 QGIILAIVTACLSWEEQAAKARERI-VGRTL 476

Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q10085|YAO6_SCHPO Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
224108371482 predicted protein [Populus trichocarpa] 0.924 0.813 0.754 1e-180
297737740443 unnamed protein product [Vitis vinifera] 0.938 0.898 0.763 1e-178
225424132481 PREDICTED: MATE efflux family protein 5 0.938 0.827 0.763 1e-178
147787625481 hypothetical protein VITISV_022104 [Viti 0.938 0.827 0.761 1e-177
255582915476 TRANSPARENT TESTA 12 protein, putative [ 0.891 0.794 0.753 1e-165
357444623495 Protein TRANSPARENT TESTA [Medicago trun 0.938 0.804 0.688 1e-164
255582921490 TRANSPARENT TESTA 12 protein, putative [ 0.929 0.804 0.705 1e-164
297737742444 unnamed protein product [Vitis vinifera] 0.938 0.896 0.708 1e-163
224108375486 predicted protein [Populus trichocarpa] 0.917 0.800 0.696 1e-163
359472648481 PREDICTED: MATE efflux family protein 5 0.938 0.827 0.708 1e-163
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 298/395 (75%), Positives = 347/395 (87%), Gaps = 3/395 (0%)

Query: 25  LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ 84
           +GMASALETLCGQAYGA+QY+++GTQTYTAIFCL LVC PLS +WIY GK+L   GQDP 
Sbjct: 88  MGMASALETLCGQAYGAKQYKKLGTQTYTAIFCLNLVCIPLSVIWIYMGKILHFTGQDPA 147

Query: 85  ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS 144
           ISHE GKF++WL+PALFAYAT+QPL+RYFQ+QS I+PM +SSCA LC HIP+CW+LVYKS
Sbjct: 148 ISHEAGKFIVWLVPALFAYATLQPLVRYFQTQSFIMPMLISSCATLCFHIPLCWALVYKS 207

Query: 145 GLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 204
           GL N+G A+A+GIS WLNV FL +Y+K+S+ACA++RVPI  ELF G+GEFF FAIPSAVM
Sbjct: 208 GLKNVGSAVAMGISYWLNVIFLGLYIKYSSACAKTRVPIYKELFYGVGEFFRFAIPSAVM 267

Query: 205 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAG 264
           ICLEWWSFELLIL+SG LPNPQLETSVLSVCL TI TLY IP+GLGAA STRV+NELGAG
Sbjct: 268 ICLEWWSFELLILLSGFLPNPQLETSVLSVCLMTISTLYGIPFGLGAAASTRVANELGAG 327

Query: 265 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVI 324
           N + AR+AVYA +F+AV+ETI+V++ LFASRRVFGY+FSNEK+V+DYVTTMAPLVCLSVI
Sbjct: 328 NPRAARLAVYAAMFLAVSETIIVTSALFASRRVFGYLFSNEKEVIDYVTTMAPLVCLSVI 387

Query: 325 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAF 384
           MDSLQGV SGVARGCGWQ+I A++NLGAFYLCGIP AA+L FWL   G GLWIGIQ GAF
Sbjct: 388 MDSLQGVLSGVARGCGWQHIGAYINLGAFYLCGIPAAALLAFWLNLGGMGLWIGIQTGAF 447

Query: 385 TQTLLLGIITTCTNWEKQASKARERISKGRSLADN 419
           TQT+LL I+T+CTNWEKQA  ARERI +G    DN
Sbjct: 448 TQTILLSIVTSCTNWEKQARMARERIFEGH---DN 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255582921|ref|XP_002532232.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528089|gb|EEF30163.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737742|emb|CBI26943.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108375|ref|XP_002314826.1| predicted protein [Populus trichocarpa] gi|222863866|gb|EEF00997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.912 0.804 0.591 1.4e-133
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.912 0.802 0.589 1.5e-129
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.952 0.832 0.592 6.6e-129
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.912 0.794 0.571 1.1e-128
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.912 0.794 0.576 1.1e-128
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.908 0.798 0.490 1.7e-105
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.941 0.822 0.495 5.8e-105
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.941 0.794 0.475 1.8e-103
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.957 0.852 0.477 2.9e-103
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.938 0.836 0.483 3.7e-103
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 229/387 (59%), Positives = 299/387 (77%)

Query:    25 LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ 84
             +G++ AL+TL GQAYGA+ Y+++G QTYTA+FCL LVC PLS +W    KLL+++GQDP 
Sbjct:    90 IGLSCALDTLSGQAYGAKLYRKLGVQTYTAMFCLALVCLPLSLIWFNMEKLLLILGQDPS 149

Query:    85 ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS 144
             I+HE GK+  WL+P LFAYA +QPL RYFQ+QSLI P+ ++S    C+H+P+CW LVY S
Sbjct:   150 IAHEAGKYATWLIPGLFAYAVLQPLTRYFQNQSLITPLLITSYVVFCIHVPLCWFLVYNS 209

Query:   145 XXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 204
                          SNWL   FL  +M +S+AC+E+R P+SME+F GIGEFF +A+PSA M
Sbjct:   210 GLGNLGGALAISLSNWLYAIFLGSFMYYSSACSETRAPLSMEIFDGIGEFFKYALPSAAM 269

Query:   205 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAG 264
             ICLEWWS+EL+IL+SGLLPNPQLETSVLSVCL TI T+Y+IP  + AA STR+SNELGAG
Sbjct:   270 ICLEWWSYELIILLSGLLPNPQLETSVLSVCLQTISTMYSIPLAIAAAASTRISNELGAG 329

Query:   265 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVI 324
             N + A + VYA + +AV + ++VS +L   R +FG++FS++K+ +DYV  MAPLV +S++
Sbjct:   330 NSRAAHIVVYAAMSLAVIDALIVSMSLLIGRNLFGHIFSSDKETIDYVAKMAPLVSISLM 389

Query:   325 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAF 384
             +D+LQGV SG+ARGCGWQ+I A++NLGAFYL GIP AA L FW+  +G GLWIGIQAGA 
Sbjct:   390 LDALQGVLSGIARGCGWQHIGAYINLGAFYLWGIPIAASLAFWIHLKGVGLWIGIQAGAV 449

Query:   385 TQTLLLGIITTCTNWEKQASKARERIS 411
              QTLLL ++T CTNWE QA KAR R++
Sbjct:   450 LQTLLLALVTGCTNWESQADKARNRMA 476
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10085YAO6_SCHPONo assigned EC number0.31060.90560.8439yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.6692.1
hypothetical protein (455 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-151
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-46
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-42
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 5e-40
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 5e-26
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-24
pfam01554161 pfam01554, MatE, MatE 2e-21
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-20
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-17
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-15
pfam01554161 pfam01554, MatE, MatE 2e-14
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 9e-13
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-10
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 7e-10
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-08
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 4e-07
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-06
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 7e-06
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 4e-04
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  435 bits (1121), Expect = e-151
 Identities = 168/381 (44%), Positives = 246/381 (64%), Gaps = 1/381 (0%)

Query: 25  LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ 84
           LG+ASAL+TLCGQA+GA+ Y+ +G     A+  L L C P+S LW+    +L+L+GQDP+
Sbjct: 57  LGLASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPE 116

Query: 85  ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS 144
           I+   G+++ WL+P LFAYA  +PL RY Q+Q +++P+   S  AL L+I + + LV+  
Sbjct: 117 IARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVL 176

Query: 145 GLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 204
           GLG +G ALA  IS WL V  L +Y+ FS     +    S E F+G G F   AIPSA+M
Sbjct: 177 GLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALM 236

Query: 205 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAG 264
           +CLEWW+FE+L+L++GLLP   +  +  S+CL T   LY IP G+  A S RV NELGAG
Sbjct: 237 LCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAG 295

Query: 265 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVI 324
           N ++A++A    + +++   +VV+  L   R V+ Y+F+++++V+  V  + P++ L  I
Sbjct: 296 NPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQI 355

Query: 325 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAF 384
            D LQ V SGV RGCG Q + A+VNL A+YL G+P   +L F L    +GLWIG+ AG  
Sbjct: 356 FDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLI 415

Query: 385 TQTLLLGIITTCTNWEKQASK 405
            Q ++L +I   T+W+K+A K
Sbjct: 416 LQAVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 424
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.94
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.93
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.93
PRK00187 464 multidrug efflux protein NorA; Provisional 99.92
COG2244480 RfbX Membrane protein involved in the export of O- 99.92
PRK10189 478 MATE family multidrug exporter; Provisional 99.92
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.91
PRK01766 456 multidrug efflux protein; Reviewed 99.91
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.81
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.59
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.55
TIGR01695502 mviN integral membrane protein MviN. This model re 99.51
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.47
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.44
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.42
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.39
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.29
PRK15099 416 O-antigen translocase; Provisional 99.25
PRK10459492 colanic acid exporter; Provisional 99.08
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.81
COG2244480 RfbX Membrane protein involved in the export of O- 98.69
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.61
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.29
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.25
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.11
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.07
COG4267467 Predicted membrane protein [Function unknown] 98.03
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.85
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.82
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.66
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.19
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-53  Score=407.28  Aligned_cols=395  Identities=22%  Similarity=0.320  Sum_probs=367.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhH
Q 014444            7 LFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQI   85 (424)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~   85 (424)
                      =-++++++..+ .+.+ ..|++.|+++++||++|+||++++++..+++++++++++++..++ +.+.++++.+++.++|+
T Consensus        54 av~la~~i~~~-~~~~-~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v  131 (455)
T COG0534          54 AVGLANPIFFL-IIAI-FIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV  131 (455)
T ss_pred             HHHHHHHHHHH-HHHH-HHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence            34556555555 4444 799999999999999999999999999999999999999888886 99999999999999999


Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc-cC-CccchhHHHHHHHHHHHH
Q 014444           86 SHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNV  163 (424)
Q Consensus        86 ~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~-~~-~g~~g~ala~~i~~~~~~  163 (424)
                      .+.+.+|+++..++.|+..++..+++.+|+.|++|.+++.+++..++|+++||+|+++ ++ +|+.|+|+||++++.+..
T Consensus       132 ~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~  211 (455)
T COG0534         132 LELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGA  211 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 57 999999999999999999


Q ss_pred             HHHHHHHHhccc-cccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHH
Q 014444          164 TFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL  242 (424)
Q Consensus       164 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~  242 (424)
                      +...++++++++ ......+..+++++.+|++++.+.|..+++......+.....+.+++|++  ++|+|+++.++.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~  289 (455)
T COG0534         212 LLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFI  289 (455)
T ss_pred             HHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHH
Confidence            999999998875 22333344456678999999999999999999999999999999999965  559999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHH
Q 014444          243 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS  322 (424)
Q Consensus       243 ~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~  322 (424)
                      +++..|++++.+++++|++|+||+|++++..+.+..+++.++...+.+++++++++.++|++|+|+.+.+..++++....
T Consensus       290 ~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~  369 (455)
T COG0534         290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALF  369 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhccHHHH
Q 014444          323 VIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ  402 (424)
Q Consensus       323 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~  402 (424)
                      .++++.+....+.+||.||+|.+++.++++.|.+.+|+.|++.++. +|..|+|++...++.++.+...+++++++|+++
T Consensus       370 ~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (455)
T COG0534         370 QPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK  448 (455)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999999999999999999999999655 999999999999999999999999999999887


Q ss_pred             HHHH
Q 014444          403 ASKA  406 (424)
Q Consensus       403 ~~~~  406 (424)
                      ..++
T Consensus       449 ~~~~  452 (455)
T COG0534         449 AVAA  452 (455)
T ss_pred             hhhc
Confidence            5543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 9e-12
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 9e-04
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 153/384 (39%), Gaps = 25/384 (6%)
Query: 25  LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ 84
           +G+  AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124
Query: 85  ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS 144
           ++ +   +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY  
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184
Query: 145 XXXXXXXXXXXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEF 194
                        +     W+ +  L  Y+  S   A  +V      P   EL +     
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----L 240
Query: 195 FHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVS 254
           F    P A  +  E   F ++ L+    P      +   V LN    ++  P  +GAAVS
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVS 298
Query: 255 TRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTT 314
            RV ++LG  + + A +A    +   +    + +      R     +++  + VV     
Sbjct: 299 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQ 358
Query: 315 MAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLG--AFYLCGIPTAAILGF--WL-- 368
           +     +   MD++Q V +G  R  G++++ A  +    ++++ G+PT  ILG   WL  
Sbjct: 359 LLLFAAIYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416
Query: 369 -KFRGRGLWIGIQAGAFTQTLLLG 391
                +G W+G   G     L+LG
Sbjct: 417 QPLGAKGFWLGFIIGLSAAALMLG 440
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-74
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  239 bits (612), Expect = 1e-74
 Identities = 84/392 (21%), Positives = 155/392 (39%), Gaps = 15/392 (3%)

Query: 12  TAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIY 71
            +I    I     +G+  AL  +  Q  GA +  +I  + +  +    LV  P+  +   
Sbjct: 54  ASIWLPSILFG--VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQ 111

Query: 72  AGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 131
              ++  +  +  ++ +   +M  ++ A+ AY   Q L  +    SL  P  +     L 
Sbjct: 112 TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLL 171

Query: 132 LHIPICWSLVYKSG----LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL 187
           L+IP+ W  VY       LG +G  +A  I  W+ +  L  Y+  S   A  +V  +   
Sbjct: 172 LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHK 231

Query: 188 --FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI 245
              + +   F    P A  +  E   F ++ L+   L +  +  +   V LN    ++  
Sbjct: 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMF 289

Query: 246 PYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNE 305
           P  +GAAVS RV ++LG  + + A +A    +   +    + +      R     +++  
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN 349

Query: 306 KQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILG 365
           + VV     +     +   MD++Q V +G  RG             ++++ G+PT  ILG
Sbjct: 350 QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409

Query: 366 F-----WLKFRGRGLWIGIQAGAFTQTLLLGI 392
                       +G W+G   G     L+LG 
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=7.9e-45  Score=354.48  Aligned_cols=393  Identities=21%  Similarity=0.334  Sum_probs=356.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 014444            2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQ   81 (424)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   81 (424)
                      ++....|++++.+..+ ...+ ..|++.+..+.+||+.|++|+++.++.+++++.+..+.+++.++++.+.+|++.+++.
T Consensus        44 ~~~~~~~~~~~~i~~~-~~~~-~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  121 (460)
T 3mkt_A           44 AIDMAAVSIAASIWLP-SILF-GVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV  121 (460)
T ss_dssp             TTTSSHHHHHHHHHHH-HHHH-HHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSS
T ss_pred             HHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence            4566788899988554 4445 7899999999999999999999999999999999999999987777788999998999


Q ss_pred             ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc-c---CCccchhHHHHHH
Q 014444           82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-S---GLGNLGGALAIGI  157 (424)
Q Consensus        82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~-~---~~g~~g~ala~~i  157 (424)
                      +++..+.+..|+++..++.|+..+.....+.+|++++.++++..++++.++|+++++++++. +   ++|+.|+++++++
T Consensus       122 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i  201 (460)
T 3mkt_A          122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAI  201 (460)
T ss_dssp             TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986 3   7999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccccccc--CCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 014444          158 SNWLNVTFLAIYMKFSTACAESR--VPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVC  235 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~  235 (424)
                      ++.+..++..++.+++++..+.+  .+..+.+++..|++++++.|..+++.........+..+++++|++  ++++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~  279 (460)
T 3mkt_A          202 VYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVA  279 (460)
T ss_dssp             HHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHH
Confidence            99999999988887765432211  222344567889999999999999999999999999999999765  55999999


Q ss_pred             HHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHH
Q 014444          236 LNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTM  315 (424)
Q Consensus       236 ~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  315 (424)
                      +++.++...+..+++++..|.+++++|+||+|++++..+++.++.+.++++.++.++++++++.++|++|+++.+.+..+
T Consensus       280 ~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~  359 (460)
T 3mkt_A          280 LNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQL  359 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998989999999


Q ss_pred             hHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHh----cC-CCcchhHHHHHHhHHHHHHHH
Q 014444          316 APLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFW----LK-FRGRGLWIGIQAGAFTQTLLL  390 (424)
Q Consensus       316 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~  390 (424)
                      +++++++.++++++....+++++.||++.+++.++++.|++++|+++++.+.    ++ +|..|+|+++.+++.+..++.
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~  439 (460)
T 3mkt_A          360 LLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALML  439 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999989999999999966    56 999999999999999998888


Q ss_pred             HHHHHhcc
Q 014444          391 GIITTCTN  398 (424)
Q Consensus       391 ~~~~~~~~  398 (424)
                      .++++|+.
T Consensus       440 ~~~~~~~~  447 (460)
T 3mkt_A          440 GQRLYWLQ  447 (460)
T ss_dssp             HSSSSSSC
T ss_pred             HHHHHHHH
Confidence            76666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00