Citrus Sinensis ID: 014446

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
MEKELNYSANFQGLDYSLDHHHHHHQEELIMKPRIGDTSDDRNNNHGMIDYMINNNPQPRPQIQQQVSSSSSGFCTSNSFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFKDNDEIRVSDNNSVQQQLRFLEDDVQNNKSVVNNGPEAKNKRKRPRAIKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAAAAPGGGRQMGDSSMAINQQPQTPLFPPPLPFPNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEEccccccHcccccccccccccccccccccEEccccccEcccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEEEEcccEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcc
mekelnysanfqgldysldhhhhhhqeelimkprigdtsddrnnnhgMIDYminnnpqprpqiqqqvsssssgfctsnsfdklSFADVMQFaefgpklsinqtnnrvnvpeeetgiidpvyflkfpvlndkldeddehslmlpqpggcnenesfkdndeirvsdnnSVQQQLRFLEDdvqnnksvvnngpeaknkrkrpraiKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRslmpgsyvqrgdqasIIGGAIEFVRELEQLLQCLESQKRRRILGeaaaapgggrqmgdssmainqqpqtplfppplpfpndqiklmdfetglreetaenksCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKvasetrftaddIASSVQQVFSFIHANSSM
MEKELNYSANFQGLDYSLDHHHHHHQEELIMKPRIGDTSDDRNNNHGMIDYMINNNPQPRPQIQQQVSSSSSGFCTSNSFDKLSFADVMQFAEfgpklsinqtnnRVNVPeeetgiidpvyFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFKDNDEIRVSDNNSVQQQLRFleddvqnnksvvnngpeaknkrkrpraiktteevesqrmthiavernrrkqMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAAAAPGGGRQMGDSSMAINQQPQTPLFPPPLPFPNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM
MEKELNYSANFQGLDYSLDhhhhhhQEELIMKPRIGDTSDDRNNNHGMIDYMInnnpqprpqiqqqvsssssGFCTSNSFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFKDNDEIRVSDNNSVQQQLRFLEDDVQNNKSVVNNGPEAKNKRKRPRAIKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVReleqllqclesqKRRRILGEAAAAPGGGRQMGDSSMAINqqpqtplfppplpfpNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM
******************************************************************************SFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLND****************************************************************************************************RVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLE****************************************************F**********NKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIH*****
*********NFQGLDYSLDH**H************************MIDYMINN**************************KLSFADVMQFAEFG********************************************************************************************************************************KQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLL************************************************************L*EETAE*KSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASE**FTADDIASSVQQVFSFIH*N***
MEKELNYSANFQGLDYSLDHHHHHHQEELIMKPRIGDTSDDRNNNHGMIDYMINNNPQP***************CTSNSFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFKDNDEIRVSDNNSVQQQLRFLEDDVQNNKSVVNNG************************THIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAAA*********DSSMAINQQPQTPLFPPPLPFPNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM
*****NYSANFQGLDYSLDHHHHHHQEELIMKPRIGDTS******H********************************SFDKLSFADVMQFAEFGPKLSINQTNN******EETGIIDPVYFLKFPVLND*****************************IRVS****VQQQL*************************************SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKR************************************************************KSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKELNYSANFQGLDYSLDHHHHHHQEELIMKPRIGDTSDDRNNNHGMIDYMINNNPQPRPQIQQQVSSSSSGFCTSNSFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFKDNDEIRVSDNNSVQQQLRFLEDDVQNNKSVVNNGPEAKNKRKRPRAIKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAAAAPGGGRQMGDSSMAINQQPQTPLFPPPLPFPNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query424 2.2.26 [Sep-21-2011]
Q56YJ8414 Transcription factor FAMA yes no 0.872 0.893 0.599 1e-117
Q9C7T4320 Transcription factor bHLH no no 0.481 0.637 0.417 9e-40
Q9SK91304 Transcription factor bHLH no no 0.459 0.641 0.433 5e-39
Q9M8K6202 Transcription factor MUTE no no 0.452 0.950 0.433 7e-39
O81037371 Transcription factor bHLH no no 0.429 0.490 0.429 9e-36
Q9M128315 Transcription factor bHLH no no 0.476 0.641 0.407 6e-34
Q700E4358 Transcription factor bHLH no no 0.433 0.513 0.390 2e-32
Q56XR0327 Transcription factor bHLH no no 0.488 0.633 0.402 1e-30
Q9FKQ6296 Transcription factor bHLH no no 0.459 0.658 0.348 5e-26
Q700C7364 Transcription factor SPEE no no 0.165 0.192 0.657 6e-22
>sp|Q56YJ8|FAMA_ARATH Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1 Back     alignment and function desciption
 Score =  423 bits (1087), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/412 (59%), Positives = 296/412 (71%), Gaps = 42/412 (10%)

Query: 35  IGDTSD-DRNNNHGMIDYMINNNPQPRPQIQQQVSS----SSSGFCTSNSFDKLSFADVM 89
           +G++S  + +N+ GMIDYM N N Q + +           S SGF  +  FDK++F+DVM
Sbjct: 11  LGESSGGNDDNSSGMIDYMFNRNLQQQQKQSMPQQQQHQLSPSGFGAT-PFDKMNFSDVM 69

Query: 90  QFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLP-----Q 144
           QFA+FG KL++NQT N+    ++ETGI DPVYFLKFPVLNDK+++ ++   ++P     Q
Sbjct: 70  QFADFGSKLALNQTRNQ---DDQETGI-DPVYFLKFPVLNDKIEDHNQTQHLMPSHQTSQ 125

Query: 145 PGG-CNEN--ESFKDNDEIRVSDNNSVQQQLRFL--EDDVQNNKSVVNNGPEAKNKRKRP 199
            GG C  N    F +  E +  DN++   QLRF+  E++ + NK+V     E K+KRKR 
Sbjct: 126 EGGECGGNIGNVFLEEKEDQDDDNDNNSVQLRFIGGEEEDRENKNVTK--KEVKSKRKRA 183

Query: 200 RAIKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR 259
           R  KT+EEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR
Sbjct: 184 RTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR 243

Query: 260 ELEQLLQCLESQKRRRILGEAAAAPGGGRQM-------GDSSMAINQQPQTPLFPPPLPF 312
           ELEQLLQCLESQKRRRILGE       GR M             +  Q Q      PL  
Sbjct: 244 ELEQLLQCLESQKRRRILGET------GRDMTTTTTSSSSPITTVANQAQ------PLII 291

Query: 313 PNDQIKLMDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDL 372
             +  +L +   GLREETAENKSCLADVEVKLLG DAMIKILSRRRPGQLIK IAALEDL
Sbjct: 292 TGNVTEL-EGGGGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDL 350

Query: 373 QFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM 424
             +ILHTNITT+EQTVLYSFNVK+ SETRFTA+DIASS+QQ+FSFIHAN+++
Sbjct: 351 HLSILHTNITTMEQTVLYSFNVKITSETRFTAEDIASSIQQIFSFIHANTNI 402
Transcription activator. Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1 Back     alignment and function description
>sp|Q9SK91|BH094_ARATH Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8K6|MUTE_ARATH Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1 Back     alignment and function description
>sp|O81037|BH070_ARATH Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1 Back     alignment and function description
>sp|Q9M128|BH057_ARATH Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1 Back     alignment and function description
>sp|Q700E4|BH067_ARATH Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1 Back     alignment and function description
>sp|Q56XR0|BH071_ARATH Transcription factor bHLH71 OS=Arabidopsis thaliana GN=BHLH71 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKQ6|BH099_ARATH Transcription factor bHLH99 OS=Arabidopsis thaliana GN=BHLH99 PE=2 SV=1 Back     alignment and function description
>sp|Q700C7|SPCH_ARATH Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
255554136411 DNA binding protein, putative [Ricinus c 0.846 0.873 0.701 1e-139
225433544400 PREDICTED: transcription factor FAMA [Vi 0.886 0.94 0.696 1e-139
356502696430 PREDICTED: transcription factor FAMA-lik 0.948 0.934 0.623 1e-134
298205263367 unnamed protein product [Vitis vinifera] 0.856 0.989 0.656 1e-128
356494798 811 PREDICTED: uncharacterized protein LOC10 0.903 0.472 0.629 1e-127
147841337422 hypothetical protein VITISV_027832 [Viti 0.818 0.822 0.689 1e-124
297831198400 hypothetical protein ARALYDRAFT_898955 [ 0.863 0.915 0.624 1e-120
30687365414 transcription factor FAMA [Arabidopsis t 0.872 0.893 0.599 1e-116
11994233380 unnamed protein product [Arabidopsis tha 0.825 0.921 0.587 1e-101
413948632420 putative HLH DNA-binding domain superfam 0.820 0.828 0.510 1e-94
>gi|255554136|ref|XP_002518108.1| DNA binding protein, putative [Ricinus communis] gi|223542704|gb|EEF44241.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/409 (70%), Positives = 318/409 (77%), Gaps = 50/409 (12%)

Query: 4   ELNY-SANFQGLDYSLDHHHHHHQEEL----IMKPRIGDTSDDRNNNHGMIDYMINNNPQ 58
           EL++  A F  LDYSLDHHHHHH  +     ++KPRIG+TS D  +N GMIDYM+NN   
Sbjct: 6   ELDFLQATFTSLDYSLDHHHHHHHHQPQQHELIKPRIGETSGD--SNSGMIDYMLNN--- 60

Query: 59  PRPQIQQQVSSSSSGFCTSNSFDKLSFADVMQFAEFGPKLSINQTNNRVNVPEEETGIID 118
           P  Q+      SSSGFCTSNS DKLSFADVMQFA+FGPKL++NQT     + EEETGI D
Sbjct: 61  PHQQL-----ISSSGFCTSNSLDKLSFADVMQFADFGPKLALNQTK----ISEEETGI-D 110

Query: 119 PVYFLKFPVLNDKLDEDDEHSLMLPQPGGCNENESFK-----------DNDEIRVSDNNS 167
           PVYFLKFPVLNDK    +  SLM+PQ G  NE E FK           + +E RVSDN S
Sbjct: 111 PVYFLKFPVLNDK---REGQSLMIPQLGEENEEERFKGMGSVERFTGREEEETRVSDNAS 167

Query: 168 VQQQLRFLEDDVQNNKSVVNNGPEAKNKRKRPRAIKTTEEVESQRMTHIAVERNRRKQMN 227
           VQ  L+FLE+    NK+ +   PE KNKRKRPR  KT+EEVESQRMTHIAVERNRRKQMN
Sbjct: 168 VQ--LQFLENQDAQNKNPI---PEVKNKRKRPRTTKTSEEVESQRMTHIAVERNRRKQMN 222

Query: 228 EHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEAAAAPGGG 287
           EHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRR+ G+AA+     
Sbjct: 223 EHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLYGDAAS----- 277

Query: 288 RQM-GDSSMAINQQPQTPLFPPPLPFPNDQIKLMDFETGLREETAENKSCLADVEVKLLG 346
           RQM G+SS+A+ QQPQ+P F    P PNDQ+KL+ FETGLREETAENKSCLADVEVKLLG
Sbjct: 278 RQMAGESSVAV-QQPQSPFF----PLPNDQMKLVQFETGLREETAENKSCLADVEVKLLG 332

Query: 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVK 395
            DAMIKILSRRRPGQLIK IAALEDLQ NILHTNITTIEQTVLYSFNVK
Sbjct: 333 FDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVK 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433544|ref|XP_002266835.1| PREDICTED: transcription factor FAMA [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502696|ref|XP_003520153.1| PREDICTED: transcription factor FAMA-like [Glycine max] Back     alignment and taxonomy information
>gi|298205263|emb|CBI17322.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356494798|ref|XP_003516270.1| PREDICTED: uncharacterized protein LOC100813515 [Glycine max] Back     alignment and taxonomy information
>gi|147841337|emb|CAN60177.1| hypothetical protein VITISV_027832 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831198|ref|XP_002883481.1| hypothetical protein ARALYDRAFT_898955 [Arabidopsis lyrata subsp. lyrata] gi|297329321|gb|EFH59740.1| hypothetical protein ARALYDRAFT_898955 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687365|ref|NP_189056.2| transcription factor FAMA [Arabidopsis thaliana] gi|75283553|sp|Q56YJ8.1|FAMA_ARATH RecName: Full=Transcription factor FAMA; AltName: Full=Basic helix-loop-helix protein 97; Short=AtbHLH97; Short=bHLH 97; AltName: Full=Transcription factor EN 14; AltName: Full=bHLH transcription factor bHLH097 gi|62319997|dbj|BAD94119.1| putative bHLH transcription factor [Arabidopsis thaliana] gi|114213507|gb|ABI54336.1| At3g24140 [Arabidopsis thaliana] gi|332643341|gb|AEE76862.1| transcription factor FAMA [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994233|dbj|BAB01355.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|413948632|gb|AFW81281.1| putative HLH DNA-binding domain superfamily protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
TAIR|locus:2093746414 FMA "AT3G24140" [Arabidopsis t 0.889 0.910 0.555 3.4e-100
UNIPROTKB|Q6ZGS3373 OJ1148_D05.9 "Putative basic-h 0.165 0.187 0.7 1.1e-39
TAIR|locus:2009537304 AT1G22490 "AT1G22490" [Arabido 0.165 0.230 0.714 6.5e-39
TAIR|locus:2207061320 AT1G72210 "AT1G72210" [Arabido 0.325 0.431 0.431 1.3e-38
UNIPROTKB|Q8H7N8329 OJ1217B09.8 "BHLH transcriptio 0.544 0.702 0.385 2.6e-38
UNIPROTKB|Q6K4B1351 OJ1595_D08.4 "Os09g0468700 pro 0.533 0.643 0.423 1.1e-37
UNIPROTKB|Q6YTU1363 P0419H09.4 "cDNA clone:002-131 0.533 0.622 0.419 1.9e-37
TAIR|locus:2116977315 AT4G01460 "AT4G01460" [Arabido 0.231 0.311 0.55 3.9e-35
TAIR|locus:2044387371 AT2G46810 "AT2G46810" [Arabido 0.294 0.336 0.425 3.4e-34
TAIR|locus:2154197364 SPCH "AT5G53210" [Arabidopsis 0.212 0.247 0.455 4.4e-34
TAIR|locus:2093746 FMA "AT3G24140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 225/405 (55%), Positives = 275/405 (67%)

Query:    35 IGDTSDDRNNNH-GMIDYM----IXXXXXXXXXXXXXXXXXXXGFCTSNSFDKLSFADVM 89
             +G++S   ++N  GMIDYM    +                   GF  +  FDK++F+DVM
Sbjct:    11 LGESSGGNDDNSSGMIDYMFNRNLQQQQKQSMPQQQQHQLSPSGF-GATPFDKMNFSDVM 69

Query:    90 QFAEFGPKLSINQTNNRVNVPEEETGIIDPVYFLKFPVLNDKLDEDDEHSLMLP-----Q 144
             QFA+FG KL++NQT N+    ++ETGI DPVYFLKFPVLNDK+++ ++   ++P     Q
Sbjct:    70 QFADFGSKLALNQTRNQ---DDQETGI-DPVYFLKFPVLNDKIEDHNQTQHLMPSHQTSQ 125

Query:   145 PGG-CNEN--ESFKDNDEIRVSDNNSVQQQLRFL--EDDVQNNKSVVNNGPEAKNKRKRP 199
              GG C  N    F +  E +  DN++   QLRF+  E++ + NK+V     E K+KRKR 
Sbjct:   126 EGGECGGNIGNVFLEEKEDQDDDNDNNSVQLRFIGGEEEDRENKNVTKK--EVKSKRKRA 183

Query:   200 RAIKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR 259
             R  KT+EEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR
Sbjct:   184 RTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVR 243

Query:   260 XXXXXXXXXXXXKRRRILGEAAAAPGGGRQMGDSSMAINXXXXXXXXXXXXXXXNDQIKL 319
                         KRRRILGE       GR M  ++ + +                  +  
Sbjct:   244 ELEQLLQCLESQKRRRILGET------GRDMTTTTTSSSSPITTVANQAQPLIITGNVTE 297

Query:   320 MDFETGLREETAENKSCLADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHT 379
             ++   GLREETAENKSCLADVEVKLLG DAMIKILSRRRPGQLIK IAALEDL  +ILHT
Sbjct:   298 LEGGGGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLSILHT 357

Query:   380 NITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIHANSSM 424
             NITT+EQTVLYSFNVK+ SETRFTA+DIASS+QQ+FSFIHAN+++
Sbjct:   358 NITTMEQTVLYSFNVKITSETRFTAEDIASSIQQIFSFIHANTNI 402
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010052 "guard cell differentiation" evidence=IMP
GO:0045597 "positive regulation of cell differentiation" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA
GO:0051782 "negative regulation of cell division" evidence=IMP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
UNIPROTKB|Q6ZGS3 OJ1148_D05.9 "Putative basic-helix-loop-helix transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2009537 AT1G22490 "AT1G22490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207061 AT1G72210 "AT1G72210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H7N8 OJ1217B09.8 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K4B1 OJ1595_D08.4 "Os09g0468700 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YTU1 P0419H09.4 "cDNA clone:002-131-D10, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2116977 AT4G01460 "AT4G01460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044387 AT2G46810 "AT2G46810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154197 SPCH "AT5G53210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56YJ8FAMA_ARATHNo assigned EC number0.59950.87260.8937yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031699001
SubName- Full=Chromosome chr5 scaffold_58, whole genome shotgun sequence; (400 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 9e-12
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 5e-11
smart0035353 smart00353, HLH, helix loop helix domain 2e-07
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 209 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYV-QRGDQASIIGGAIEFVRELEQLLQ 266
           +S+R  H   ER RR+++N+    LRSL+P     ++  +A I+  A+++++ L++LLQ
Sbjct: 2   KSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 424
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.32
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.28
smart0035353 HLH helix loop helix domain. 99.23
KOG1318411 consensus Helix loop helix transcription factor EB 98.68
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.35
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.34
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.29
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 98.13
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.12
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.07
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.97
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 97.97
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.93
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.93
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.83
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.72
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.5
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.43
KOG4029228 consensus Transcription factor HAND2/Transcription 97.38
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.19
KOG0561373 consensus bHLH transcription factor [Transcription 97.17
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.15
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 97.03
PRK05007884 PII uridylyl-transferase; Provisional 97.03
PLN0321793 transcription factor ATBS1; Provisional 96.97
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.89
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.8
KOG4447173 consensus Transcription factor TWIST [Transcriptio 96.8
PRK04374869 PII uridylyl-transferase; Provisional 96.7
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.67
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.58
PRK03381774 PII uridylyl-transferase; Provisional 96.49
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 96.49
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.47
PRK05092931 PII uridylyl-transferase; Provisional 96.47
PRK03381774 PII uridylyl-transferase; Provisional 96.44
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.44
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.37
PRK0019490 hypothetical protein; Validated 96.35
KOG3910632 consensus Helix loop helix transcription factor [T 96.29
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 96.23
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 96.14
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 96.12
PRK05007 884 PII uridylyl-transferase; Provisional 96.01
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 96.01
PRK03059856 PII uridylyl-transferase; Provisional 95.96
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.74
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 95.61
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 95.49
PRK03059856 PII uridylyl-transferase; Provisional 95.39
PRK05092 931 PII uridylyl-transferase; Provisional 95.24
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 95.03
PRK00275 895 glnD PII uridylyl-transferase; Provisional 94.92
PRK04435147 hypothetical protein; Provisional 94.74
cd0211660 ACT ACT domains are commonly involved in specifica 94.57
PRK04374 869 PII uridylyl-transferase; Provisional 94.06
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 93.65
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 93.57
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 93.47
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 93.34
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 93.23
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 92.47
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 92.44
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 92.43
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 92.24
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 92.12
PRK08577136 hypothetical protein; Provisional 92.03
KOG3898254 consensus Transcription factor NeuroD and related 91.94
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 91.93
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 91.88
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 91.87
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 91.64
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 91.47
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 91.0
PRK07334403 threonine dehydratase; Provisional 90.99
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 90.9
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 90.07
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 90.03
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 89.96
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 89.34
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 89.22
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 88.57
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 87.02
PF05088 1528 Bac_GDH: Bacterial NAD-glutamate dehydrogenase 87.01
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 86.67
CHL00100174 ilvH acetohydroxyacid synthase small subunit 86.06
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 85.64
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 85.61
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 85.36
PRK11589 190 gcvR glycine cleavage system transcriptional repre 84.4
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 84.17
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 83.82
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 83.72
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 83.59
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 83.17
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 83.06
COG383090 ACT domain-containing protein [Signal transduction 82.73
PRK11895161 ilvH acetolactate synthase 3 regulatory subunit; R 82.48
cd0492266 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona 80.93
COG0788 287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 80.77
COG4492150 PheB ACT domain-containing protein [General functi 80.76
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information 
Probab=99.32  E-value=2.4e-12  Score=97.38  Aligned_cols=52  Identities=33%  Similarity=0.599  Sum_probs=48.1

Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHccCCCC---CCCCCCccchHHHHHHHHHHHH
Q 014446          211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE  262 (424)
Q Consensus       211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~---~~~K~dKaSIL~eAI~YIk~Lq  262 (424)
                      +|..|+.+||+||.+||+.|..|+.+||..   ...|.+|++||..||+||++||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            367899999999999999999999999985   4578999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00100 ilvH acetohydroxyacid synthase small subunit Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 6e-10
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 1e-09
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 4e-09
1hlo_A80 Protein (transcription factor MAX); transcriptiona 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-08
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 8e-06
1a0a_A63 BHLH, protein (phosphate system positive regulator 3e-05
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLES 270
           +R  H A+ER RR  + +    LR  +P    ++  +A I+  A E+++ + +     + 
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

Query: 271 QKRR 274
               
Sbjct: 62  DIDD 65
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.56
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.49
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.48
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.45
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.44
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.4
4ati_A118 MITF, microphthalmia-associated transcription fact 99.38
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.37
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.36
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.33
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.29
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.15
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.05
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.74
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.58
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.4
4ath_A83 MITF, microphthalmia-associated transcription fact 97.99
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.78
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.19
1u8s_A 192 Glycine cleavage system transcriptional repressor, 96.47
2nyi_A 195 Unknown protein; protein structure initiative, PSI 95.94
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.69
1u8s_A192 Glycine cleavage system transcriptional repressor, 95.47
2nyi_A195 Unknown protein; protein structure initiative, PSI 95.46
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 92.27
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 91.95
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 91.01
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 90.4
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 90.34
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 90.25
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 88.78
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 87.29
2pc6_A165 Probable acetolactate synthase isozyme III (small; 84.91
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 84.03
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 80.87
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.56  E-value=5.5e-15  Score=120.36  Aligned_cols=64  Identities=23%  Similarity=0.435  Sum_probs=59.3

Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446          210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR  274 (424)
Q Consensus       210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~  274 (424)
                      .++.+|+.+||+||.+||++|..|++|||+. ..|++|++||.+||+||++|+.+++.|+.+...
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~   68 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999984 489999999999999999999999999987664
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 424
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 3e-13
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 2e-12
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 3e-11
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 5e-11
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 8e-11
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 1e-10
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 1e-09
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLES 270
           +R  H A+ER RR  + +    LR  +P    ++  +A I+  A E+++ + +     + 
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

Query: 271 QKRR 274
               
Sbjct: 62  DIDD 65
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query424
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.49
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.41
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.39
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.29
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.16
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.9
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 96.45
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 94.83
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 93.47
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 92.26
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 85.19
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 83.18
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 81.59
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=114.95  Aligned_cols=64  Identities=23%  Similarity=0.435  Sum_probs=59.0

Q ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446          210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR  274 (424)
Q Consensus       210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~  274 (424)
                      .+|..|+.+||+||.+||+.|..|++|||.. ..|++|++||..||+||+.|+++++.|+.+...
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~-~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~   68 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999985 578999999999999999999999999887654
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure