Citrus Sinensis ID: 014457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
Protein Sequence
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLWSRLERLSGNFSLI
Secondary Structure (PSIPRED)
cHHHHcccccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccHHcccccccccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHccccccccccccccHHHHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVQVLTDLELVISKsyissdggwfmDVFHVTDQLGNKLTDETLILYIQQALCasrrgggasneVQKClkrdvrprhvstentalevtgvdrpglMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEdglegrpitapEMLAHVEEQLEIVVGahhgegetrsvrlttpmpgrthTERRLHQLMYADRDyelcrgcdggaghwngctrTHVLIDsckekgysvvnikcidrpkllFDTLCALTDLQYVVFHAAIsskgcfadqeyfirqtdgctldtESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVsmaeigtngekatgsfyvmdasghdvNQRTVELLKQEIGGSVLVVnkssnrtsqaSSVSlsrsssgggslddrpkfslgNLLWSRLERLSGNFSLI
Flexible Loop (DISEMBL)
MVQVLTDLELVISKsyissdggwFMDVFHVTDQLGNKLTDETLILYIQQALCASrrgggasnevqkclkrdvrprhvstentalevtgvdrpgLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAhhgegetrsvrlttpmpgrthTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLvvnkssnrtsqassvslsrsssgggslddrpkFSLGnllwsrlerlsgnfsli
Low Complexity Region (SEG)
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKSSNRTsqassvslsrsssgggsLDDRPKFSLGNLLWSRLERLSGNFSLI
Disordered region (IsUnstruct)
***VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRG*********CL*************TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH**********************RLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV********************************LGNLLWSRL**********
Disordered Region (DISOPRED)
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQAL*************************VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHG*****SVRLTTPMPGRTHTERRLHQLMYADRDYELC*************TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS***********************************SLGNLLWSRLERLSGNFSLI
Disordered Region (DISEMBL)
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA**********VQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKS**********************DDRPKFSLGNLLWSRLERLSGNFSLI
Disordered Region (DISPRO)
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCAS**********************VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGA***NGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNK**************************PKFSLGNLLWSRLERLSGNFSLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLWSRLERLSGNFSLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	424	2.2.26 [Sep-21-2011]
Q65SZ8	875	[Protein-PII] uridylyltra	yes	no	0.344	0.166	0.247	1e-05
Q2N784	919	[Protein-PII] uridylyltra	yes	no	0.297	0.137	0.292	1e-05
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.167	0.076	0.375	3e-05
Q1I624	900	[Protein-PII] uridylyltra	yes	no	0.339	0.16	0.256	9e-05
Q5WVX6	861	[Protein-PII] uridylyltra	yes	no	0.200	0.098	0.284	0.0001
A5ICM0	861	[Protein-PII] uridylyltra	yes	no	0.200	0.098	0.284	0.0001
Q5X4J1	861	[Protein-PII] uridylyltra	yes	no	0.200	0.098	0.284	0.0001
Q5ZUS2	861	[Protein-PII] uridylyltra	yes	no	0.200	0.098	0.284	0.0001
Q3SWE0	925	[Protein-PII] uridylyltra	yes	no	0.167	0.076	0.361	0.0001
B1JBR2	900	[Protein-PII] uridylyltra	yes	no	0.339	0.16	0.262	0.0002

>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glnD PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)

Query: 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTE 279
           G + V I C DRP L    + A+ + +  +  A I +S   +A   + + + DG  L  +
Sbjct: 697 GGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLLKFD 756

Query: 280 SQR-------QKLTQCLIAAIERRVSHGLR--------------------LEICTQNRMG 312
            +R         L    +  ++   +H L+                    +E+ T ++ G
Sbjct: 757 RRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFTLDKAG 816

Query: 313 LLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366
           LL+DV+  F E  LS+  A+I T GEKA   F + +A G  +++R  + L +++
Sbjct: 817 LLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSERERQSLSEKL 870

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Mannheimia succiniciproducens (strain MBEL55E) (taxid: 221988)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glnD PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 11  VISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC--ASRRGGGASNEVQKCL 68
           +I     ++  GW +D + V D +G    +E  +  I+QA+    + RG       ++ L
Sbjct: 754 IIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQLARIEQAIADAIANRGELVPKLAKRPL 813

Query: 69  KR------DVRPR-----HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
           K+      DVRPR       S   T +EV   DR  L++ +   L+E    V +A    +
Sbjct: 814 KQTRAGAFDVRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAY 873

Query: 118 KTRAACIFYIEDGLEGRPIT 137
             RAA  FY+ D L G  IT
Sbjct: 874 GERAADTFYVTD-LTGAKIT 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 78  STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
           S  +T +EV+G+DRPGL+ +++A + +L  ++ +A   T   RA  +FY+ D L  R IT
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-IT 904

Query: 138 APEMLAHVEEQL 149
           AP   A ++  L
Sbjct: 905 APTRQAAIKRAL 916

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila (strain L48) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 35/179 (19%)

Query: 212 VLIDSCKEKGY---SVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
           VLI    ++ +   + + I   D+      T+ A+  L   +  A  I+S   F    Y 
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYI 750

Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
           +   DG ++    QR K     LT+ L       A I+RRV   L+              
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDA 810

Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
                 LEI   +R GLL+ + R F E  +S+  A+I T GE+    F++ DA    ++
Sbjct: 811 QRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLS 869

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5WVX6|GLND_LEGPL [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain Lens) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
           I  I+   +H  +L + T +R GLL+ ++R F    + +  A+I T GE+    FY+ + 
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835

Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
           +G+ +N     +LK+++   +L ++KS 
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5ICM0|GLND_LEGPC [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain Corby) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
           I  I+   +H  +L + T +R GLL+ ++R F    + +  A+I T GE+    FY+ + 
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835

Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
           +G+ +N     +LK+++   +L ++KS 
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Legionella pneumophila (strain Corby) (taxid: 400673)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5X4J1|GLND_LEGPA [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain Paris) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
           I  I+   +H  +L + T +R GLL+ ++R F    + +  A+I T GE+    FY+ + 
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835

Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
           +G+ +N     +LK+++   +L ++KS 
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5ZUS2|GLND_LEGPH [Protein-PII] uridylyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=glnD PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
           I  I+   +H  +L + T +R GLL+ ++R F    + +  A+I T GE+    FY+ + 
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835

Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
           +G+ +N     +LK+++   +L ++KS 
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 78  STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
           S  +T +EV+G+DRPGL+ +++  + +L  ++ +A   T   RA  +FY+ D L  R IT
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-IT 902

Query: 138 APEMLAHVEEQL 149
           AP   A ++  L
Sbjct: 903 APTRQAAIKRAL 914

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain W619) GN=glnD PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 35/179 (19%)

Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
           VLI    ++   G + + I   D+      T+ A++ L   +  A  I+S   F    Y 
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYI 750

Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
           +   DG ++    QR K     LT+ L         I+RRV   L+              
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILNDA 810

Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
                 LEI   +R GLL+ + R F E  LS+  A+I T GE+    F++ DA    ++
Sbjct: 811 QRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas putida (strain W619) (taxid: 390235)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
224095019	482	predicted protein [Populus trichocarpa]	0.997	0.877	0.727	1e-178
255568655	477	amino acid binding protein, putative [Ri	0.995	0.884	0.723	1e-176
224129764	482	predicted protein [Populus trichocarpa]	0.992	0.873	0.703	1e-172
359496882	468	PREDICTED: uncharacterized protein LOC10	0.976	0.884	0.682	1e-162
449508537	476	PREDICTED: uncharacterized protein LOC10	0.983	0.876	0.630	1e-147
449451315	476	PREDICTED: uncharacterized protein LOC10	0.983	0.876	0.626	1e-146
356497013	477	PREDICTED: uncharacterized protein LOC10	0.985	0.876	0.613	1e-139
356541590	459	PREDICTED: uncharacterized protein LOC10	0.950	0.877	0.597	1e-135
357482521	486	ACT domain-containing protein [Medicago	1.0	0.872	0.575	1e-129
297794201	477	hypothetical protein ARALYDRAFT_919932 [	0.959	0.853	0.569	1e-128

>gi|224095019|ref|XP_002310330.1| predicted protein [Populus trichocarpa] gi|222853233|gb|EEE90780.1| predicted protein [Populus trichocarpa]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/430 (72%), Positives = 363/430 (84%), Gaps = 7/430 (1%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+LVISKSYISSDGGWFMDVFHVTDQLGNKLTDE+LILYIQQALCA+RR G  
Sbjct: 52  MVQVLTDLDLVISKSYISSDGGWFMDVFHVTDQLGNKLTDESLILYIQQALCANRRRG-V 110

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
           S E+  CL R+VRPRHVSTE+T LE+ G DRPGL+SEISAVL+EL CHV AA+AWTH TR
Sbjct: 111 SKELPTCLNREVRPRHVSTEHTTLEMAGTDRPGLLSEISAVLFELECHVTAALAWTHNTR 170

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGR-THTER 179
           AA I Y+EDG  G PIT P+ LAHV+EQLE VV A HG GE RSVRLT P PG+ THTER
Sbjct: 171 AASIIYMEDGFRGGPITDPKRLAHVQEQLENVVEARHGMGERRSVRLTAPAPGQQTHTER 230

Query: 180 RLHQLMYADRDYELCRGCDGG-AGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFD 238
           RLHQLMYA+ DYE C+GC+GG A H N CT+THV I+SC+EKGYSVVN++  DRPKLLFD
Sbjct: 231 RLHQLMYANIDYEPCQGCNGGGAAHRNNCTKTHVFIESCEEKGYSVVNVRSRDRPKLLFD 290

Query: 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS 298
           TLCALTD+QYVVFHA +SSKG  ADQEYFIRQ DGCTLDT+S+R KLTQCLIAAIERRVS
Sbjct: 291 TLCALTDMQYVVFHAVVSSKGTMADQEYFIRQKDGCTLDTDSERHKLTQCLIAAIERRVS 350

Query: 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
           HGLRL+I T NRMGLLSD+TRAFRENGLS+S AEIGTNG++A GSFYV DASG++ N + 
Sbjct: 351 HGLRLDIRTHNRMGLLSDLTRAFRENGLSISSAEIGTNGDRAVGSFYVTDASGYEANPQV 410

Query: 359 VELLKQEIGGSVLVVNKS---SNRTSQASSVSLSRSSSGGGSL-DDRPKFSLGNLLWSRL 414
           +E +K+EIGGS++VVNKS   + +TS+  SV+    +S G S+ +D+P+FSLG+L WS+L
Sbjct: 411 IEHVKKEIGGSIVVVNKSPGWTPKTSKTPSVASISRTSSGSSIHEDKPRFSLGSLFWSQL 470

Query: 415 ERLSGNFSLI 424
           ERLS NFS I
Sbjct: 471 ERLSNNFSSI 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568655|ref|XP_002525301.1| amino acid binding protein, putative [Ricinus communis] gi|223535459|gb|EEF37129.1| amino acid binding protein, putative [Ricinus communis]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 308/426 (72%), Positives = 355/426 (83%), Gaps = 4/426 (0%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+LVISKSYI SDGGWFMDVFHVTDQLGNKLTDE+LILYIQQALC +RR G A
Sbjct: 52  MVQVLTDLDLVISKSYICSDGGWFMDVFHVTDQLGNKLTDESLILYIQQALCTNRRAG-A 110

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
           S E+Q CLKR+VRPRHVST++TA+E+TG+DRPG++SEISAVL EL CHV AAVAWTH +R
Sbjct: 111 SQELQNCLKREVRPRHVSTDHTAMEMTGIDRPGMLSEISAVLAELQCHVTAAVAWTHNSR 170

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
           AACI Y+EDGL G PIT    LAHVEEQL+ VV AHHG GE RSVRL +P+ G+THTERR
Sbjct: 171 AACIIYMEDGLSGGPITDSNKLAHVEEQLQNVVEAHHGIGEMRSVRLASPVTGQTHTERR 230

Query: 181 LHQLMYADRDYELCRGC-DGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDT 239
           LHQLM A  DYE C GC DG A H   CT+ HV I+SCKEKGYSVVN++ +DRPKLLFDT
Sbjct: 231 LHQLMSATLDYEPCCGCTDGDAAHQRNCTKIHVSIESCKEKGYSVVNMRSMDRPKLLFDT 290

Query: 240 LCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSH 299
           LCALTD+QYVVFHAA+SSKG  A QEYFIR  DGCTLDTES+R KLT+CLIAA ERR SH
Sbjct: 291 LCALTDMQYVVFHAAVSSKGTMARQEYFIRHKDGCTLDTESERHKLTKCLIAATERRASH 350

Query: 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTV 359
           GLRL+I T NR+GLLSDVTR FRENGLS+S AEIG  G++A GSFY+ DASG + N  T+
Sbjct: 351 GLRLDISTHNRVGLLSDVTRVFRENGLSISRAEIGLQGDRAVGSFYITDASGDEANTHTL 410

Query: 360 ELLKQEIGGSVLVVNKSSNRTSQASSVS-LSRSSSGGGSLDDRPKFSLGNLLWSRLERLS 418
           EL+++EIGGSVLVVNKS   T +  S + +SR+SSG    +++PKFSLG+LLWS+LERLS
Sbjct: 411 ELVRKEIGGSVLVVNKSPGWTPRTPSTAGISRTSSGSVG-EEKPKFSLGSLLWSQLERLS 469

Query: 419 GNFSLI 424
           GNF  I
Sbjct: 470 GNFGSI 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129764|ref|XP_002320665.1| predicted protein [Populus trichocarpa] gi|222861438|gb|EEE98980.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 303/431 (70%), Positives = 358/431 (83%), Gaps = 10/431 (2%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+LVISKSYISSDGGWFM+VFHVTDQLG+KLTD++LILYIQQALC  RR G  
Sbjct: 53  MVQVLTDLDLVISKSYISSDGGWFMEVFHVTDQLGSKLTDDSLILYIQQALCVDRRRG-V 111

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
           S E Q  L R+VRP + ST++TA+E+TG DRPGL+SEISAVL +L CHV A+  WTH  R
Sbjct: 112 SKESQTSLHREVRPPYASTDHTAMEITGTDRPGLLSEISAVLSKLECHVTASAVWTHNNR 171

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPG-RTHTER 179
           AA I Y+EDG +G PIT P+ LAHV+EQLE VV AHHG GE RSVRLT P PG +THT R
Sbjct: 172 AASIIYMEDGFQGGPITDPKRLAHVQEQLENVVEAHHGVGERRSVRLTAPAPGQKTHTGR 231

Query: 180 RLHQLMYADRDYELCRGCDGGA-GHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFD 238
           RLHQLMYA+ DYE C+GC+GG   H N CT+ HV IDSCKEKGYSVVN++  DRPKLLFD
Sbjct: 232 RLHQLMYANMDYEPCQGCNGGGLAHRNNCTKIHVSIDSCKEKGYSVVNVRSRDRPKLLFD 291

Query: 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS 298
           TLCALTD+QYVVFHAA+S+KG  ADQEYFIRQ DGCTLDTES+R KLTQCLIAAIERRVS
Sbjct: 292 TLCALTDMQYVVFHAAVSAKGTMADQEYFIRQQDGCTLDTESERHKLTQCLIAAIERRVS 351

Query: 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
           HG RL+ICT NRMGLLS+VTRAFRENGLS+S AEIGTNG++A GSFYV DASG++ N + 
Sbjct: 352 HGARLDICTHNRMGLLSNVTRAFRENGLSISRAEIGTNGDRAVGSFYVTDASGYEANPQA 411

Query: 359 VELLKQEIGGSVLVVNKS---SNRTSQASSV-SLSRSSSGGGSLD-DRPKFSLGNLLWSR 413
           ++ +K+E+GGSV+VVNKS   + +TS+  SV S+SR+SS  GS+D ++P+ S G+L WS+
Sbjct: 412 IDEVKKEMGGSVVVVNKSPGWTPKTSRTPSVGSVSRNSS--GSIDEEKPRLSPGSLFWSQ 469

Query: 414 LERLSGNFSLI 424
           L+RLS NFS I
Sbjct: 470 LKRLSSNFSSI 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496882|ref|XP_002265013.2| PREDICTED: uncharacterized protein LOC100264704 [Vitis vinifera] gi|296085715|emb|CBI29515.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/425 (68%), Positives = 341/425 (80%), Gaps = 11/425 (2%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDLELVISKSYI SDGGWFMDVFHVTDQLGNKLTDE+LILYIQQALCA+R+ G  
Sbjct: 52  MVQVLTDLELVISKSYICSDGGWFMDVFHVTDQLGNKLTDESLILYIQQALCANRKQG-I 110

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
           S E+Q  L R++ PRHVSTE+TA E+TG DRPGLMSEISAVL EL CHV AAVAWTH +R
Sbjct: 111 SKELQARLGREMNPRHVSTEHTAFEITGTDRPGLMSEISAVLAELSCHVTAAVAWTHNSR 170

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
            ACI  +ED L+G PI  PE LAHVEEQLE VV A H  GE R VRLT P+ GRTHT+RR
Sbjct: 171 VACIICLEDELKGGPIRDPERLAHVEEQLENVVEARHQSGERRKVRLTAPVAGRTHTDRR 230

Query: 181 LHQLMYADRDYE-LCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDT 239
           LHQLM+AD+DYE  C GCDG +       R  V I++CKEKGYSVVN+K  DRPKLLFDT
Sbjct: 231 LHQLMFADKDYERCCGGCDGSSD------RIQVSIENCKEKGYSVVNVKSRDRPKLLFDT 284

Query: 240 LCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSH 299
           +C LTD+QYVVFHAA+SSKG  A QEYFIRQ DGCTL T+S+R ++ QCLIAAIERRV+H
Sbjct: 285 VCTLTDMQYVVFHAAVSSKGSIAVQEYFIRQMDGCTLGTQSERNRVAQCLIAAIERRVTH 344

Query: 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTV 359
           GLRL+I  +NR+GLLSD+TR FRENGLS+ MAEIG +GE+A+GSFYV D SG DV+  TV
Sbjct: 345 GLRLDIRIKNRLGLLSDITRVFRENGLSIRMAEIGIHGERASGSFYVTDVSGRDVSPNTV 404

Query: 360 ELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLWSRLERLSG 419
           EL+++EIGG+++ VNKSS   S  +S S  RS++   S+++RP+FSLG  LWS++ER S 
Sbjct: 405 ELIRKEIGGTIMAVNKSSVPPSLPASPSRDRSTA--SSVENRPRFSLGT-LWSQIERFSS 461

Query: 420 NFSLI 424
           NF  I
Sbjct: 462 NFGPI 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508537|ref|XP_004163340.1| PREDICTED: uncharacterized protein LOC101229243 [Cucumis sativus]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/428 (63%), Positives = 327/428 (76%), Gaps = 11/428 (2%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+LVISKSYISSDGGWFMDVFHVTDQ GNKLTDE+LI YI+QALCASR+ G +
Sbjct: 54  MVQVLTDLDLVISKSYISSDGGWFMDVFHVTDQFGNKLTDESLIHYIKQALCASRKEG-S 112

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             +V+ C   +     +S E+TA E+TG+DRPGL+SEI AVL ELGC+V AAVAWTH  +
Sbjct: 113 PRKVRMC---NTGKELLSPEHTAAEITGIDRPGLLSEIFAVLVELGCNVTAAVAWTHHKK 169

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
           AA I YIE+G  G  I   + LAHV+EQLE VV AH+G+GET SV+LT P  G TH ERR
Sbjct: 170 AASIIYIEEGWNGGMIKDSKRLAHVQEQLENVVDAHNGQGETSSVKLTAPSAGWTHPERR 229

Query: 181 LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL 240
           LHQLMYA+ DYE CR  D        CTRTHV I+SCKEKGYS++NI+  DRPKLLFDT+
Sbjct: 230 LHQLMYANGDYEQCRCHDDSKSCKMSCTRTHVKIESCKEKGYSIINIRSRDRPKLLFDTV 289

Query: 241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHG 300
           CALTDLQYVVFHAA+SS G  A QEYFIRQ  GC LD+ES+R++L Q L+AAIERRVSHG
Sbjct: 290 CALTDLQYVVFHAAVSSNGTVAYQEYFIRQKGGCILDSESERKRLLQALVAAIERRVSHG 349

Query: 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGH--DVNQRT 358
           LRLE+C  NR+GLLSD+TR FRENG S+S  ++ TNG++A GS ++ DASGH  DV+   
Sbjct: 350 LRLELCALNRVGLLSDITRVFRENGFSISTMDVKTNGKRAIGSIFITDASGHDVDVDPHI 409

Query: 359 VELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGG--GSLDDRPKFSLGNLLWSRLER 416
           ++L+ +EIGGS+ VV   S    + SS   SR++ G     ++D+P+FSLGNLLWS+LER
Sbjct: 410 LDLVLKEIGGSIAVVQGPSKWDDRTSS---SRANHGTKVARVEDKPRFSLGNLLWSQLER 466

Query: 417 LSGNFSLI 424
           LS NF  I
Sbjct: 467 LSTNFGSI 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451315|ref|XP_004143407.1| PREDICTED: uncharacterized protein LOC101215529 [Cucumis sativus]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/428 (62%), Positives = 326/428 (76%), Gaps = 11/428 (2%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+LVISKSYISSDGGWFMDVFHVTDQ GNKLTDE+LI YI+QALCASR+ G +
Sbjct: 54  MVQVLTDLDLVISKSYISSDGGWFMDVFHVTDQFGNKLTDESLIHYIKQALCASRKEG-S 112

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             +V+ C   +     +S E+TA E+TG+DRPGL+SEI AVL ELGC++ AAVAWTH  +
Sbjct: 113 PRKVRMC---NTGKELLSPEHTAAEITGIDRPGLLSEIFAVLVELGCNITAAVAWTHHKK 169

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
           AA I YIE+G  G  I   + LAHV+EQLE VV AH+G+GET SV+LT P  G TH ERR
Sbjct: 170 AASIIYIEEGWNGGMIKDSKRLAHVQEQLENVVDAHNGQGETSSVKLTAPSAGWTHPERR 229

Query: 181 LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL 240
           LHQLMYA+ DYE CR  D        CTRTHV I+SCKEKGYS++NI+  DRPKLLFDT+
Sbjct: 230 LHQLMYANGDYEQCRCHDDSKSCKMSCTRTHVKIESCKEKGYSIINIRSRDRPKLLFDTV 289

Query: 241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHG 300
           CALTDLQYVVFHAA+SS G  A QEYFIRQ  GC LD+E +R++L Q L+AAIERRVSHG
Sbjct: 290 CALTDLQYVVFHAAVSSNGTVAYQEYFIRQKGGCILDSECERKRLLQALVAAIERRVSHG 349

Query: 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGH--DVNQRT 358
           LRLE+C  NR+GLLSD+TR FRENG S+S  ++ TNG++A GS ++ DASGH  DV+   
Sbjct: 350 LRLELCALNRVGLLSDITRVFRENGFSISTMDVKTNGKRAIGSIFITDASGHDVDVDPHI 409

Query: 359 VELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGG--GSLDDRPKFSLGNLLWSRLER 416
           ++L+ +EIGGS+ VV   S    + SS   SR++ G     ++D+P+FSLGNLLWS+LER
Sbjct: 410 LDLVLKEIGGSIAVVQGPSKWDDRTSS---SRANHGTKVARVEDKPRFSLGNLLWSQLER 466

Query: 417 LSGNFSLI 424
           LS NF  I
Sbjct: 467 LSTNFGSI 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497013|ref|XP_003517359.1| PREDICTED: uncharacterized protein LOC100781435 [Glycine max]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/424 (61%), Positives = 314/424 (74%), Gaps = 6/424 (1%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+L+ISKSYISSDGGW MDVFHVTD+ G KLTDETL+L+IQQ +  S+R    
Sbjct: 52  MVQVLTDLDLIISKSYISSDGGWCMDVFHVTDEAGKKLTDETLMLHIQQVI-VSKREISR 110

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             E+        + ++V  ENTALE++  DRPGL+SE+SAVL ELGC V +A+AWTH  R
Sbjct: 111 DTEMVSQKAPQAQQQNVPKENTALEMSVTDRPGLLSELSAVLVELGCSVTSAMAWTHNDR 170

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
            ACI ++ED     PI+ PE L  VEEQLE VV AH   G+ +SVR+TT   GRTHTERR
Sbjct: 171 VACIIFLEDASSPGPISDPERLGLVEEQLENVVAAHGETGQKKSVRVTTLGTGRTHTERR 230

Query: 181 LHQLMYADRDYELCRGCDGGAG--HWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFD 238
           LHQLMYADRDYE CR CDG +   H  GC  THV +  C++KGY VVN++  DRPKLLFD
Sbjct: 231 LHQLMYADRDYESCRACDGDSSGEHKKGCDGTHVSVGRCEDKGYLVVNVRSRDRPKLLFD 290

Query: 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGC-TLDTESQRQKLTQCLIAAIERRV 297
           T+C LTD+QYVVFHAAISSK   A QEYFIR   G   L +E ++++LT CLIAAIERRV
Sbjct: 291 TVCVLTDMQYVVFHAAISSKRSMAHQEYFIRNCKGSLALPSEREKEELTLCLIAAIERRV 350

Query: 298 SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQR 357
           SHGL ++I T NRMGLLS+VTR FRENGLS+S  EIGT GEKA GSF+V D+SG +VN  
Sbjct: 351 SHGLMVDIRTDNRMGLLSNVTRVFRENGLSISRFEIGTEGEKAVGSFFVTDSSGEEVNPD 410

Query: 358 TVELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLWSRLERL 417
            VEL++Q  GGSV+  +KS +R  Q+SS S    +   GS++ +PKFSLG+LLWSRLERL
Sbjct: 411 IVELVRQASGGSVVTDHKSPHRVHQSSSSSDINETM--GSMEPKPKFSLGSLLWSRLERL 468

Query: 418 SGNF 421
           SG F
Sbjct: 469 SGGF 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541590|ref|XP_003539257.1| PREDICTED: uncharacterized protein LOC100811109 [Glycine max]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/427 (59%), Positives = 308/427 (72%), Gaps = 24/427 (5%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+L+ISKSYISSDGGW MDVFHVTD+ G KLTDETL+L+IQQ LCA+R  G  
Sbjct: 52  MVQVLTDLDLIISKSYISSDGGWCMDVFHVTDEAGKKLTDETLMLHIQQELCATRSKGEI 111

Query: 61  SNEVQKCLKR--DVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK 118
           S + +   ++    + ++V+ ENTALE++  DR GL+SE+SAVL ELG  V +A AWTH 
Sbjct: 112 SRDTELASQKGAQAQQQNVAMENTALEMSVTDRAGLLSELSAVLVELGYSVTSATAWTHN 171

Query: 119 TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTE 178
            R ACI ++ED     PI+ P+ L  VEEQLE VV AH   G+  SVR+TT   GRTHTE
Sbjct: 172 DRVACIIFLEDASSPGPISDPKRLGLVEEQLENVVAAHGETGQKNSVRVTTLGTGRTHTE 231

Query: 179 RRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFD 238
           RRLHQLMYADRDYE CR CD          RTHV +  C++KGY VVN++  DRPKLLFD
Sbjct: 232 RRLHQLMYADRDYESCRACD----------RTHVSVGRCEDKGYLVVNVRSRDRPKLLFD 281

Query: 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGC-TLDTESQRQKLTQCLIAAIERRV 297
           T+C LTD+QYVVFHAAISSK   ADQEYFIR   G   L +ES+ ++LT CLIAAIERRV
Sbjct: 282 TVCVLTDMQYVVFHAAISSKRSMADQEYFIRHCKGSLALPSESETEELTLCLIAAIERRV 341

Query: 298 SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQR 357
           S GL ++I T+NRMGLLS+VTR FRENGLS+S  EIGT GEKA GSF+V D+SG  VN  
Sbjct: 342 SRGLMVDIRTENRMGLLSNVTRVFRENGLSISRFEIGTEGEKAVGSFFVTDSSGEQVNPN 401

Query: 358 TVELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLWSRLERL 417
            VEL++Q  GGSV+  +KS +R  Q+ S            ++ +PKFSLG+LLWSRLERL
Sbjct: 402 IVELVRQASGGSVVTDHKSPHRVRQSQS-----------DIEAKPKFSLGSLLWSRLERL 450

Query: 418 SGNFSLI 424
           SG F  I
Sbjct: 451 SGGFGPI 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482521|ref|XP_003611547.1| ACT domain-containing protein [Medicago truncatula] gi|355512882|gb|AES94505.1| ACT domain-containing protein [Medicago truncatula]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/433 (57%), Positives = 307/433 (70%), Gaps = 9/433 (2%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVLTDL+L+ISKSYISSDGGWFMDVFHVTDQ G KLTD  L+  I++ LCA+R     
Sbjct: 52  MVQVLTDLDLIISKSYISSDGGWFMDVFHVTDQAGKKLTDRNLMHQIEKELCATRAKEDI 111

Query: 61  SNE-VQKCL---KRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT 116
            +E +Q C    +     + VSTENTALE++G+DRPGL+SEISAVL  + C+V +A AWT
Sbjct: 112 DDEELQGCAEYSQSKYSKQIVSTENTALEMSGMDRPGLLSEISAVLVNMSCNVTSATAWT 171

Query: 117 HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTH 176
           H  R ACI Y+E+  +  PI  P  LA V+EQLE VV AH  +GE  +VRL     GRTH
Sbjct: 172 HNGRVACILYVEEASKPGPIRDPRRLAQVKEQLESVVVAHCEKGERNNVRLRNFAAGRTH 231

Query: 177 TERRLHQLMYADRDYELCRGC--DGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPK 234
           TERRLHQLMYADRDYE CR C  D    H  GC  THV I  CK++GY VVN+ C DRPK
Sbjct: 232 TERRLHQLMYADRDYEGCRACHGDSSGDHKKGCDGTHVSISRCKDRGYWVVNLVCRDRPK 291

Query: 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT-DGCTLDTESQRQKLTQCLIAAI 293
           L FDT+C L D+QYVVFHAAISSK   ADQEY+IR   +G  L T+S+R+KL  C+IAAI
Sbjct: 292 LFFDTVCVLRDMQYVVFHAAISSKKSIADQEYYIRHKWNGLALRTQSEREKLILCIIAAI 351

Query: 294 ERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHD 353
           ERRVSHGLR++ICT+N+ GLLS VTR  RENGLS+   EIG  G+   G+FYV D SG +
Sbjct: 352 ERRVSHGLRVDICTENKTGLLSKVTRVIRENGLSIPRVEIGMRGDDVVGTFYVRDPSGQE 411

Query: 354 VNQRTVELLKQEIGGSVLVV--NKSSNRTSQASSVSLSRSSSGGGSLDDRPKFSLGNLLW 411
           V    VELL+QE GGSV VV  +K+  + S+ SS S S ++S   S++D P+ S+G+ LW
Sbjct: 412 VKPNIVELLRQECGGSVDVVTDHKAPRKLSRTSSSSSSSTNSENSSIEDTPRLSIGSKLW 471

Query: 412 SRLERLSGNFSLI 424
           S++ ++S N S I
Sbjct: 472 SQIGKISSNLSPI 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794201|ref|XP_002864985.1| hypothetical protein ARALYDRAFT_919932 [Arabidopsis lyrata subsp. lyrata] gi|297310820|gb|EFH41244.1| hypothetical protein ARALYDRAFT_919932 [Arabidopsis lyrata subsp. lyrata]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/430 (56%), Positives = 306/430 (71%), Gaps = 23/430 (5%)

Query: 1   MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
           MVQVL DL+LVISK YISSDG WFMDVFHVTDQLGNKLTD +LILYIQQA+C+SR GG  
Sbjct: 53  MVQVLADLDLVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGG-I 111

Query: 61  SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
           + E+Q  LKR+V+ RHVSTE+TA E+TG++RPGL+SEISAVL ++GCHV AAVAWTH  R
Sbjct: 112 TKEMQSNLKREVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHER 171

Query: 121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLT------TPMPGR 174
           AA + Y+EDG  G PI  P   A V++ L+ V+ AHH  G+   V +        P+ G 
Sbjct: 172 AAMVIYLEDGFNGGPIIDPIRKAQVKDHLDTVMEAHHRVGDVSHVVVRVVEAKGAPV-GW 230

Query: 175 THTERRLHQLMYADRDYELCRGCDGGAGH----WNG-CTRTHVLIDSCKEKGYSVVNIKC 229
            HTERRLH+LMY + DYE C  CD         W G C R HV I++C   GYS+VN+KC
Sbjct: 231 AHTERRLHELMYGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKC 288

Query: 230 IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCL 289
            DRPKLLFDT+CAL +LQ+VVFHA   +KG  A+QEYFIR+ +GCTL+TE QR++L  CL
Sbjct: 289 RDRPKLLFDTVCALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGCTLETEVQRERLRHCL 348

Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
           +AAI RR S GL+LEI T+N+MGLLSDVTR  RENGLS++ AE+ T GE A GSFYV D 
Sbjct: 349 VAAISRRASRGLKLEIRTENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDV 408

Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSSNRTSQASSVSLSRSSSGGGSLD-DRPKFSLGN 408
           +G + N   VE + +E+GG+V+   K       A  +  +R  S   S++ D+ K S+G 
Sbjct: 409 NGGETNANAVEAVVRELGGAVVSAVK-------AVGMVPTRMGSTSDSVEQDKAKSSIGR 461

Query: 409 LLWSRLERLS 418
           L WS+LERLS
Sbjct: 462 LFWSKLERLS 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	424
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.964	0.857	0.560	1.1e-117
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.870	0.814	0.5	3.4e-93
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.622	0.528	0.415	5e-89
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.849	0.791	0.484	2e-88
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.865	0.804	0.471	1.9e-83
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.672	0.658	0.449	1.2e-60
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.643	0.608	0.449	1.5e-58
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.672	0.646	0.427	1.1e-57
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.554	0.571	0.242	7.2e-05

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 240/428 (56%), Positives = 298/428 (69%)

Query:     1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
             MVQVL DL+LVISK YISSDG WFMDVFHVTDQLGNKLTD +LILYIQQA+C+SR GG  
Sbjct:    53 MVQVLADLDLVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGG-I 111

Query:    61 SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             + E+Q  LKR+V+ RHVSTE+TA E+TG++RPGL+SEISAVL ++GCHV AAVAWTH  R
Sbjct:   112 TKEMQSNLKREVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHER 171

Query:   121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSV--RLTTP--MP-GRT 175
             AA + Y+EDG  G PI  P   A V++ L+ V+ AHH  G+   V  R+     +P G  
Sbjct:   172 AAMVIYLEDGFNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWA 231

Query:   176 HTERRLHQLMYADRDYELCRGCD--GGA--GHWNG-CTRTHVLIDSCKEKGYSVVNIKCI 230
             HTERRLH+LMY + DYE C  CD  G      W G C R HV I++C   GYS+VN+KC 
Sbjct:   232 HTERRLHELMYGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKCR 289

Query:   231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290
             DRPKLLFDT+CAL +LQ+VVFHA   +KG  A+QEYFIR+ +G TL+TE QR++L  CL+
Sbjct:   290 DRPKLLFDTVCALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLV 349

Query:   291 AAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDAS 350
             AAI RR S GL+LEI T+N+MGLLSDVTR  RENGLS++ AE+ T GE A GSFYV D +
Sbjct:   350 AAISRRASQGLKLEIRTENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVN 409

Query:   351 GHDVNQRTVELLKQEIGGSVLVVNKSSNRTXXXXXXXXXXXXXXXXXLDDRPKFSLGNLL 410
             G +     VE + +E+GG+V+   K                        D+ K S+G + 
Sbjct:   410 GGETGPSEVEAVVRELGGAVVSAVKGVGMMPRRIGSTSDSVE------QDKAKSSIGRMF 463

Query:   411 WSRLERLS 418
             WS+LERLS
Sbjct:   464 WSKLERLS 471

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 191/382 (50%), Positives = 255/382 (66%)

Query:     1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
             +VQVLTDL+L I+K+YISSDGGWFMDVFHVTDQ GNK+TD   I YI++ L   +    A
Sbjct:    52 VVQVLTDLDLTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVL-GPKGHASA 110

Query:    61 SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             S       +  V   H   ++T++E+   DRPGL+SE+SAVL +L  +V AA AWTH  R
Sbjct:   111 SQNTWPGKRVGV---HSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRR 167

Query:   121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERR 180
              AC+ Y+ D    R +  PE L+ +EEQL  V+     + E +  R +  + G TH +RR
Sbjct:   168 IACVLYVNDNATSRAVDDPERLSSMEEQLNNVLRGCEEQDE-KFARTSLSI-GSTHVDRR 225

Query:   181 LHQLMYADRDYELCRGCDGGAGHWNGCT-RTHVLIDSCKEKGYSVVNIKCIDRPKLLFDT 239
             LHQ+ +ADRDYE     D  A     C     + ++ C+EKGYSV+N+ C DRPKL+FD 
Sbjct:   226 LHQMFFADRDYEAVTKLDDSAS----CGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDI 281

Query:   240 LCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSH 299
             +C LTD+QY+VFHA ISS G  A QEYFIR  DGCTLDTE +++++ +CL AAI RRVS 
Sbjct:   282 VCTLTDMQYIVFHATISSSGSHASQEYFIRHKDGCTLDTEGEKERVVKCLEAAIHRRVSE 341

Query:   300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTV 359
             G  LE+C ++R+GLLS+VTR  RE+GLSVS A + T GE+A   FYV DASG+ V+ +T+
Sbjct:   342 GWSLELCAKDRVGLLSEVTRILREHGLSVSRAGVTTVGEQAVNVFYVKDASGNPVDVKTI 401

Query:   360 ELLKQEIGGSVLV--VNKSSNR 379
             E L+ EIG S+++   NK  +R
Sbjct:   402 EALRGEIGHSMMIDFKNKVPSR 423

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 115/277 (41%), Positives = 164/277 (59%)

Query:   157 HGEGETRSVRLTTPMPG--RTHTERRLHQLMYADRDYE--LCRGCDGG--AGHWNGCTR- 209
             H E ET    L     G   ++ ERRLHQLM + RD++   C        +     C   
Sbjct:   221 HKENETDGF-LAGQGKGCMNSNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHK 279

Query:   210 ----THVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQE 265
                 T V I +C+E+GYS+V +K  DR +L+FDT+C L D+QYV+FHAA+ S G  A QE
Sbjct:   280 ERKTTIVSIGNCEERGYSIVTVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQE 339

Query:   266 YFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENG 325
             YFIR  DG  L+TE +++++ +CL AAIERRV  G++LE+C +NR+GLLSD+TR  RENG
Sbjct:   340 YFIRHIDGRALNTEGEKERVIKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENG 399

Query:   326 LSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKSSNRTXXXXX 385
             L+V  A++ T G+K+  +FYV D SG+ ++   VE +K+E+    L V     +      
Sbjct:   400 LTVVRADVETQGQKSLNAFYVRDISGNKIDMEFVESVKKEMRPIHLEVKNEDTKIDTVGS 459

Query:   386 XXXXXXXXXXXXLDDRP-KFSLGNLLWSRLERLSGNF 421
                            +P +FSLG++L S++ERLS NF
Sbjct:   460 DEPTASASATPQRQPQPHRFSLGDILRSQMERLSLNF 496

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 183/378 (48%), Positives = 255/378 (67%)

Query:     1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
             +VQ+LTDL L I+K+YISSDGGWFMDVF+VTDQ GNK+TDE ++ YIQ++L       G 
Sbjct:    54 VVQILTDLNLTITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSL-------GP 106

Query:    61 SNEVQKCLKRDVRPRHV--STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK 118
                 + C    +R   V  ST++T +E+TG DRPGL+SE+SAVL  L C V  A  WTH 
Sbjct:   107 ----EACFSTSMRSVGVIPSTDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHN 162

Query:   119 TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTE 178
             TRAA +  + D L G  I+ PE L+ ++  L  V+    G    R  + T    G  HT+
Sbjct:   163 TRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVL---KGSNTPREAK-TVVSHGEVHTD 218

Query:   179 RRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFD 238
             RRLHQ+M+ DRDYE  R  D  +   +   R  V +D+  +K YSVV ++C DRPKLLFD
Sbjct:   219 RRLHQMMFEDRDYEH-RLVDDDSSIQDERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFD 277

Query:   239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS 298
             T+C LTD+QYVVFH ++ ++G  A QEY++R  DG  + +E+++Q++ QCL AAI+RRVS
Sbjct:   278 TVCTLTDMQYVVFHGSVDTEGTEAFQEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVS 337

Query:   299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
              GL+LE+CT +R+GLLS+VTR FREN L+V+ AE+ T G KA  +FYV DASG+ ++ +T
Sbjct:   338 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKT 397

Query:   359 VELLKQEIGGSVLVVNKS 376
             ++ ++Q IG ++L V  +
Sbjct:   398 IDSIRQTIGQTILKVKNN 415

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 180/382 (47%), Positives = 252/382 (65%)

Query:     1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
             +VQVLT+L L I K+YISSDGGWFMDVF+VTDQ GNK+TDE ++ YI+++L     G   
Sbjct:    54 VVQVLTELNLTIKKAYISSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSL-----GPDE 108

Query:    61 SNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
             S+     ++  +  +  S + T +E+TG DRPGL+SE+ AVL +L C+V  A  WTH+ +
Sbjct:   109 SSCFSPSMRSTIGVKQ-SVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAK 167

Query:   121 AACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV-GAHHGEGETRSVRLTTPMP-GRTHTE 178
             AA +  + D      IT PE L+ + + L  V+ G   G    R  + T       THT+
Sbjct:   168 AAAVLQVTDEETCSAITDPERLSKIRKLLGYVLTGGSSGR-RFREPKTTVSSALNETHTD 226

Query:   179 RRLHQLMYADRDYELCRGCDGGAGHWNGCTRT--HVLIDSCKEKGYSVVNIKCIDRPKLL 236
             R+LHQLM+ADRDY+     +      + C R    V + +  +  YS+V IKC DRPKLL
Sbjct:   227 RKLHQLMFADRDYD---EWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLL 283

Query:   237 FDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR 296
             FDT+  LTD+ YVV HA+I ++G  A QEY+IR TDG  + +E++RQ++ +CL AAI+RR
Sbjct:   284 FDTVFTLTDMNYVVSHASIDAEGPQAYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRR 343

Query:   297 VSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ 356
             VS GL+LE+CT +R+GLLSDVTR FREN L+V+ AE+ T G+KA  +FYV DASG+ V+ 
Sbjct:   344 VSEGLKLELCTSDRVGLLSDVTRIFRENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDT 403

Query:   357 RTVELLKQEIGGSVLVVNKSSN 378
             +T+E ++Q IG ++L V K  N
Sbjct:   404 KTIESIRQVIGQTILQV-KGGN 424

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 133/296 (44%), Positives = 190/296 (64%)

Query:    80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAP 139
             E T++E+ G DRPGL+SE+SAVL +L C+V  A  WTH TRAA + ++ D      IT P
Sbjct:   117 EYTSIELAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDP 176

Query:   140 EMLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDG 199
               L+ ++E L  VV  + G    ++V   +     TH ERRLHQ+M+ DRDYE  +    
Sbjct:   177 IRLSTIKELLCNVVRTNSGSRAAKTVFSCSD----THRERRLHQIMFDDRDYEGVKRART 232

Query:   200 GAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG 259
              A      +R  V + +  EK Y+VV ++  DRPKL+FD +C LTD+QYVVFH  +S++ 
Sbjct:   233 SA------SRPSVTLMNI-EKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEP 285

Query:   260 CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTR 319
               A QE++IR  DG  +++E++++++ QCL AAIERR S GL LE+  ++R+GLLSD+TR
Sbjct:   286 VEAYQEFYIRHVDGLPINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITR 345

Query:   320 AFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNK 375
              FREN L++  AEI T   KA  +FYV D +G+ V  + VE ++Q+IG S L V K
Sbjct:   346 TFRENSLTIVRAEISTREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKK 401

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 130/289 (44%), Positives = 186/289 (64%)

Query:    82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAP-E 140
             TALE+TG DR GL+SE+ AVL +L C V  A AWTH  R A + Y++DG  G PI    +
Sbjct:   114 TALELTGTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSD 173

Query:   141 MLAHVEEQLEIVVGAHHG-EGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDG 199
              +  VE QL  ++ A  G + +TR+        G TH ERRLHQ M+ DRDYE  +  D 
Sbjct:   174 RVQRVEGQLRNLLKADDGYQNDTRTC---VSYGGNTHMERRLHQRMFMDRDYE--KKFD- 227

Query:   200 GAGHWNGCTRTHVL-IDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK 258
                      ++ ++ + +  ++GYSVVN++C DR KLLFD +C LTD+ Y+VFHAAI + 
Sbjct:   228 -------IEKSPIVSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTV 280

Query:   259 GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVT 318
             G  A  E+++R +DG  + +E +RQ+L QCL AAIERR   G+RLE+CT +R GLL++VT
Sbjct:   281 GETAFLEFYVRHSDGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVT 340

Query:   319 RAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG 367
             R  RENGL+++ AEI T    A   FYV DA+G+ ++   ++ ++++IG
Sbjct:   341 RILRENGLNIARAEISTKDSIARNVFYVTDANGNLIDPEIIKSIREKIG 389

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 126/295 (42%), Positives = 183/295 (62%)

Query:    82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
             TALE+TG DR GL+SE+ AVL +L C V  A  WTH  R A + Y++D + G PI     
Sbjct:   114 TALELTGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHR 173

Query:   142 LAHVEEQLEIVVGAHHGEGETRSVRLT-TPMPGRTHTERRLHQLMYADRDYELCRGCDGG 200
             ++ +E +L+ V+   +G+ +  S   T   +    H ERRLHQLM+ DRDYE        
Sbjct:   174 ISKIEGRLKNVL---NGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYER-----RS 225

Query:   201 AGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC 260
               H        V + +  E+GYSVVN+ C DR KLLFD +C LTD++Y VFHA I++   
Sbjct:   226 KKHERS-PMVVVTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAED 284

Query:   261 FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRA 320
              A  E++IR  DG  + +E++RQ++ QCL AA+ERR   G+RLE+   ++ GLL++VTR 
Sbjct:   285 QAHLEFYIRHKDGSPISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRT 344

Query:   321 FRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNK 375
             FRENGL+V+  EI T+ + AT  FYV DA+G + + + +E ++++IG   L V +
Sbjct:   345 FRENGLNVTRTEISTSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVKE 399

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 63/260 (24%), Positives = 111/260 (42%)

Query:    90 DRPGLMSEISAVLYELGCHVPAA-VAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQ 148
             DR GL+ +++ VL EL   +    V  T   R   +F+I D ++   +   +      + 
Sbjct:   118 DRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMD--LLHTKQRQTKTCDH 175

Query:   149 LEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCT 208
             L  V+G H   G +  + L  P      + +R   L     D EL  G DG     +   
Sbjct:   176 LTAVLGEH---GVSCELELAGP---ELESVQRFSSLPPLAAD-ELF-GPDGFDISGSSSN 227

Query:   209 RTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYF 267
             +  + +D+     ++++ I+C+D+  L +D L    D    + +   SSK   + + E F
Sbjct:   228 KAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELF 287

Query:   268 IRQTDGCTL-DTESQRQ---KLTQCLIAAIERR-VSHGLRLEICTQN--------RMGLL 314
             +R TDG  + D + Q     +L + ++  +    V+ G   E+   N        R  + 
Sbjct:   288 VRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVF 347

Query:   315 SDVTRAFRENGLSVSMAEIG 334
              DVT A +  G+ +  AEIG
Sbjct:   348 YDVTLALKSLGICIFSAEIG 367


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      424       407   0.00078  118 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  257 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.68u 0.13s 29.81t   Elapsed:  00:00:01
  Total cpu time:  29.68u 0.13s 29.81t   Elapsed:  00:00:01
  Start:  Fri May 10 22:17:39 2013   End:  Fri May 10 22:17:40 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_VII000505 hypothetical protein (482 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	424
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	6e-35
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	4e-29
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-29
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	4e-26
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	9e-18
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-17
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	8e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-12
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	7e-10
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	7e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-07
pfam01842	66	pfam01842, ACT, ACT domain	3e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	5e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	7e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-05
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-04
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.001
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	0.003
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.003
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  123 bits (311), Expect = 6e-35
 Identities = 47/75 (62%), Positives = 57/75 (76%)

Query: 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQ 281
           YSVV ++C DRPKLLFD +C LTD+ YVVFHA I + G  A QEY+IR  DG TL TE +
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 282 RQKLTQCLIAAIERR 296
           RQ++ +CL AAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  107 bits (270), Expect = 4e-29
 Identities = 42/55 (76%), Positives = 50/55 (90%)

Query: 1  MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASR 55
           VQVLTDL+L I+K+YISSDGGWFMDVFHVTDQLGNKLTD++LI YI+++L  SR
Sbjct: 18 AVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  107 bits (270), Expect = 4e-29
 Identities = 41/72 (56%), Positives = 57/72 (79%)

Query: 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTV 359
           G+RLE+ T++R+GLLSDVTR FRENGL+V+ AEI T G+ A   FYV DA+G+ V+ +T+
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 360 ELLKQEIGGSVL 371
           E ++QEIG + L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  100 bits (250), Expect = 4e-26
 Identities = 37/72 (51%), Positives = 50/72 (69%)

Query: 82  TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
           TA+E+TG DRPGL+SE+ AVL +L C+V  A AWTH  R AC+ Y+ D   G PI  P  
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 142 LAHVEEQLEIVV 153
           LA +E++L+ V+
Sbjct: 61  LASIEDRLDNVL 72

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 76.7 bits (190), Expect = 9e-18
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVEL 361
            LE+   +R GLL+DVTR   E GL++  A+I T GE+A   FYV DA G  ++    E 
Sbjct: 2   VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEA 61

Query: 362 LKQEIG 367
           L+  +G
Sbjct: 62  LRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 82  TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
           T LE+T +DRPGL+++++ VL ELG ++ +A   T   RA  +FY+ D  +G+P+  PE 
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPLD-PER 58

Query: 142 LAHVEEQLEIVV 153
              +   L   +
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 69.1 bits (170), Expect = 5e-15
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELL 362
           +E+   +R GLL+D+TR   + GL++  A I T GE+A   FYV D+ G  ++   +  L
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 363 KQEI 366
           ++ +
Sbjct: 63  EEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 63.0 bits (154), Expect = 8e-13
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 82  TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
           T +EV   DRPGL+++I+ VL +LG ++  A   T   RA  +FY+ D  +GRP+  PE 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPLD-PER 58

Query: 142 LAHVEEQLE 150
           +A +EE LE
Sbjct: 59  IARLEEALE 67

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 59.9 bits (146), Expect = 9e-12
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQR 282
           +VV +   DRP LL D    L DL   +  A IS+ G  A   +++  +DG  LD   + 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLD-PERI 59

Query: 283 QKLTQCLIAAI 293
            +L + L  A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 55/194 (28%)

Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC-FADQEYFIRQTDGCTLDT----- 278
           V +   DRP+L F  +CA           A+S +G    D + F  + DG  LDT     
Sbjct: 687 VFVYAPDRPRL-FAVVCA-----------ALSRRGLSIVDAQIFTTR-DGYALDTFIVLE 733

Query: 279 -------ESQRQKLTQCLIAAIE---------RRVSHGLR-------------------- 302
                  E +R  L   LI A+          RR+   LR                    
Sbjct: 734 PDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTV 793

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELL 362
           LE+   +R GLL+ +   F + GLS+  A+I T GE+    F V DA G  +N    + L
Sbjct: 794 LEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSL 853

Query: 363 KQEIGGSVLVVNKS 376
            Q +  ++L  ++ 
Sbjct: 854 LQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1  MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCAS 54
          + +VL DL L I  + IS+ G   +DVF+VTD  G  L  E  I  +++AL  +
Sbjct: 17 ITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPER-IARLEEALEDA 69

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 8   LELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQKC 67
           L +V ++ + + DG + +D F V +  G    +E     ++  L  +   G A    ++ 
Sbjct: 710 LSIVDAQIFTTRDG-YALDTFIVLEPDG-FPVEEDRRAALRGELIEALLSGKAQPPRRRR 767

Query: 68  LKRDVRPRHVSTE----NTA------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
           + R +R   +        TA      LEV  +DRPGL++ ++ V  +LG  + +A   T 
Sbjct: 768 IPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827

Query: 118 KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152
             R   +F + D  +G+ + A    + ++  LE +
Sbjct: 828 GERVEDVFIVTD-ADGQALNAELRQSLLQRLLEAL 861

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
           +E+  ++R GLL D+TRA  +  L+++ A I T GE+A   FYV D  G  +    
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEA 901

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 51/195 (26%), Positives = 74/195 (37%), Gaps = 33/195 (16%)

Query: 209 RTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYF 267
               LID  +  G + V I   D+P L      AL  L   V  A + ++K   A   + 
Sbjct: 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFV 714

Query: 268 IRQTDGCTLDTESQRQKLTQCLIAAIE----------------RRVSH------------ 299
           ++   G     E   Q+L Q L+  +                 RR+ H            
Sbjct: 715 VQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNT 774

Query: 300 ----GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
                  +E+   +R GLL+ V R   E GLS+  A+I T GEKA   FYV D  G  + 
Sbjct: 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLT 834

Query: 356 QRTVELLKQEIGGSV 370
               + L + +  SV
Sbjct: 835 DEEEQRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 11  VISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQK---C 67
           V      ++  G  +D F V D  G+    E +   + Q L     G     +       
Sbjct: 696 VHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRA 755

Query: 68  LKRDVRPRHVSTE----NTA------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
            +R ++   V       NTA      +EV  +DRPGL++ +   L ELG  + +A   T 
Sbjct: 756 RRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTF 815

Query: 118 KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAH 156
             +A  +FY+ D L G  +T  E     E++L  V+ A 
Sbjct: 816 GEKAEDVFYVTD-LFGLKLTDEE-----EQRLLEVLAAS 848

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 23/153 (15%)

Query: 14  KSYISSDGGWFMDVFHVTDQLGNKLTDET-----LILYIQQALCASRRGGGASNEVQKCL 68
           + + ++DG   +D F + D  G    DE      L   I+ AL    R       + K  
Sbjct: 764 RIFTTTDG-RALDTFWIQDAFGRDE-DEPRRLARLAKAIEDALSGEVR---LPEALAKRT 818

Query: 69  KRDVRPR------HVSTENTA------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT 116
           K   R R       V+ +N A      +EV G DRPGL+ +++  L +L  ++ +A   T
Sbjct: 819 KPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT 878

Query: 117 HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
           +  RA  +FY+ D L G  IT     A +   L
Sbjct: 879 YGERAVDVFYVTD-LFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVEL 361
            LE+   +R GLL++V  A  + G+++      T+G+KA   F ++     +  +  +E 
Sbjct: 2   VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVF-IVVVVDEEDLEAALEA 60

Query: 362 LKQEIG 367
           LK+ +G
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELL 362
           L +   +R GLL+ V     E G++++  E  T+G+      + +   G    ++ +E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIF-IVVDGDGDLEKLLEAL 59

Query: 363 K 363
           +
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)

Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYF 267
           VLI    ++   G + + I   D+      T+ A+  L   +  A I +S   F    Y 
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYI 750

Query: 268 IRQTDGCTLDTESQR-QKLTQCLIAA----------IERRVSHGLR-------------- 302
           +   DG  +     R +++ + L  A          I+RRV   L+              
Sbjct: 751 VLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDA 810

Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGH 352
                 LEI   +R GLL+ + R F E  LS+  A+I T GE+    F++ DA   
Sbjct: 811 QRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ 866

Length = 895

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 60/258 (23%), Positives = 99/258 (38%), Gaps = 41/258 (15%)

Query: 41  ETLILYIQQALCASRRGGGASNEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISA 100
           +T   + +    A   G   + EV+    R V         T + V   D PGL S I+ 
Sbjct: 701 DTQARHARFIRDADDAGRPLATEVRPDPARGV---------TEVTVLAADHPGLFSRIAG 751

Query: 101 VLYELGCHVPAAVAWTHKT-RAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGE 159
                G ++  A  +T    RA   F+I+D   GR    P  LA + + +E         
Sbjct: 752 ACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDA-----LS 805

Query: 160 GETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKE 219
           GE   VRL   +  RT  ++R                               V ID+   
Sbjct: 806 GE---VRLPEALAKRTKPKKRARAFHVP----------------------PRVTIDNEAS 840

Query: 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTE 279
             ++V+ +   DRP LL+D   AL+DL   +  A I++ G  A   +++    G  +  E
Sbjct: 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNE 900

Query: 280 SQRQKLTQCLIAAIERRV 297
           +++  + + L+AA+    
Sbjct: 901 ARQAAIRRALLAALAEGE 918

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 14/161 (8%)

Query: 2   VQVLTDLELVISKSYI-SSDGGWFMDVFHVTDQLGNKL-TDETLILYIQQALCASRRGGG 59
           V  +  L L I  + I +S   + +D + V D  G  +  +   I  I++ L  + R   
Sbjct: 722 VAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781

Query: 60  -----ASNEVQKCLKRDVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
                    V + LK    P  V+  N      T LE+   DRPGL++ I  +  E    
Sbjct: 782 DYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLS 841

Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
           +  A   T   R   +F+I D  + +P++ P++ + +++ +
Sbjct: 842 LQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 3  QVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCAS 54
          +VL +L L I  + I++ G    DVF+VTD  G  L  E     ++ AL  +
Sbjct: 19 RVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPER-QEALRAALGEA 69

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVEL 361
           LE+   +R GLL+ + RA    G+ V  A + T G      FYV  A+G  +      +
Sbjct: 710 LEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADARAAV 768

Length = 774

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELL 362
           +E+   +R GLL+ V++ F E  L++  A+I T GEKA   F + +  G  +++   + L
Sbjct: 786 MELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKAL 845

Query: 363 KQEI 366
           K  +
Sbjct: 846 KSRL 849

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 35.9 bits (84), Expect = 0.003
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 305 ICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDV-NQRTVELL 362
           I T +R GL + +  A  + GL++  A I T  +  A  +F V+D  G  +  +  +  +
Sbjct: 6   IYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARI 65

Query: 363 KQEI 366
           ++ +
Sbjct: 66  REAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 33/184 (17%)

Query: 212 VLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAA--ISSKGCFADQEYFIR 269
           VL+     +G + + I   DRP L F  +CA  D + +  H A   +S+   A   + + 
Sbjct: 691 VLLSKQATRGGTEIFIWSPDRPYL-FAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVL 749

Query: 270 QTDGCTLDTESQRQKLTQCLIAAIE---------RRVSHGLR------------------ 302
           + DG  L  + + Q + + L  A+          RR+   LR                  
Sbjct: 750 EPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRR 808

Query: 303 --LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVE 360
             +E+   ++ GLL+ V + F + G+S+  A I T GE+    F +  A    +N+   +
Sbjct: 809 SYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQ 868

Query: 361 LLKQ 364
            L+Q
Sbjct: 869 ELRQ 872

Length = 884

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 84  LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLA 143
           L V+G DRPGL++++ +VL E G ++ +    T         +I        +     L 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV-------VDGDGDLE 53

Query: 144 HVEEQLE 150
            + E LE
Sbjct: 54  KLLEALE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	424
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.95
PRK05007	884	PII uridylyl-transferase; Provisional	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.91
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
PRK05092	931	PII uridylyl-transferase; Provisional	99.9
PRK03059	856	PII uridylyl-transferase; Provisional	99.89
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.88
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.81
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.81
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.79
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.75
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.75
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.7
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.64
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.6
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.58
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.55
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.52
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.49
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.37
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.35
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.33
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.32
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.31
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.25
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.22
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.21
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.21
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.21
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.98
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.87
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.78
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.48
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.38
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.38
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.37
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.36
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.23
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.2
COG4747	142	ACT domain-containing protein [General function pr	98.19
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.16
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.08
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.95
PRK00194	90	hypothetical protein; Validated	97.94
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.9
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.87
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.84
PRK00194	90	hypothetical protein; Validated	97.82
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.82
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.65
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.61
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.46
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.4
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.4
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.39
COG3830	90	ACT domain-containing protein [Signal transduction	97.35
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.32
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.28
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.27
COG4747	142	ACT domain-containing protein [General function pr	97.25
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.24
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.18
COG3830	90	ACT domain-containing protein [Signal transduction	97.18
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.15
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.15
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.06
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.05
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.03
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	96.97
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.96
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.95
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.94
PRK07431	587	aspartate kinase; Provisional	96.92
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.89
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.89
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.88
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.84
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.81
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.81
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.79
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.74
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.73
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.73
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.73
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.64
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.64
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.61
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.58
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.56
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.56
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.56
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.55
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.53
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.52
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.51
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.49
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.47
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.4
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.39
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.33
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.2
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.19
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.17
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.17
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.16
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.13
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.12
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.08
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.07
PRK08577	136	hypothetical protein; Provisional	96.04
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.01
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.98
PRK08577	136	hypothetical protein; Provisional	95.97
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.87
PRK11899	279	prephenate dehydratase; Provisional	95.85
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.83
PRK04435	147	hypothetical protein; Provisional	95.81
cd02116	60	ACT ACT domains are commonly involved in specifica	95.81
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.78
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.77
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.75
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.71
PRK04435	147	hypothetical protein; Provisional	95.6
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.53
PRK07431	587	aspartate kinase; Provisional	95.53
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.41
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.4
cd02116	60	ACT ACT domains are commonly involved in specifica	95.27
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.26
PRK07334	403	threonine dehydratase; Provisional	95.19
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	95.12
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.1
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.96
PRK06635	404	aspartate kinase; Reviewed	94.66
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	94.64
PRK07334	403	threonine dehydratase; Provisional	94.53
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.4
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.31
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.19
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.98
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	93.92
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.65
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	93.31
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	93.31
PRK08210	403	aspartate kinase I; Reviewed	93.19
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.15
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.14
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.1
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.09
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.98
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.43
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.41
PRK06291	465	aspartate kinase; Provisional	92.35
PRK14630	143	hypothetical protein; Provisional	92.34
COG1707	218	ACT domain-containing protein [General function pr	92.27
PRK06635	404	aspartate kinase; Reviewed	92.12
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	92.04
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.0
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.99
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.76
PLN02317	382	arogenate dehydratase	91.75
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.7
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.57
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	91.07
PRK09034	454	aspartate kinase; Reviewed	90.87
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	90.71
PRK06349	426	homoserine dehydrogenase; Provisional	90.61
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	90.57
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.45
PRK14646	155	hypothetical protein; Provisional	90.42
PRK08818	370	prephenate dehydrogenase; Provisional	90.32
PLN02551	521	aspartokinase	90.26
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.19
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.12
PRK14634	155	hypothetical protein; Provisional	89.81
PRK14636	176	hypothetical protein; Provisional	89.77
PRK14645	154	hypothetical protein; Provisional	89.42
PRK06382	406	threonine dehydratase; Provisional	89.19
PRK06382	406	threonine dehydratase; Provisional	89.02
PRK09181	475	aspartate kinase; Validated	88.84
PRK06545	359	prephenate dehydrogenase; Validated	88.72
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	88.69
COG1707	218	ACT domain-containing protein [General function pr	87.96
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	87.82
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	87.66
PRK14637	151	hypothetical protein; Provisional	87.26
PRK14640	152	hypothetical protein; Provisional	87.14
PRK14647	159	hypothetical protein; Provisional	87.04
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	86.96
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	86.71
PRK06545	359	prephenate dehydrogenase; Validated	86.36
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	86.24
PRK11898	283	prephenate dehydratase; Provisional	86.16
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	85.98
PRK09224	504	threonine dehydratase; Reviewed	85.83
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	85.82
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	85.74
PRK12483	521	threonine dehydratase; Reviewed	85.52
PRK00092	154	ribosome maturation protein RimP; Reviewed	85.1
PRK14638	150	hypothetical protein; Provisional	85.03
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	84.88
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	84.78
PRK14639	140	hypothetical protein; Provisional	84.77
PRK14633	150	hypothetical protein; Provisional	84.62
PRK08198	404	threonine dehydratase; Provisional	84.21
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	84.16
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	83.91
PRK11899	279	prephenate dehydratase; Provisional	83.21
PRK06349	426	homoserine dehydrogenase; Provisional	83.1
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	83.0
PRK09084	448	aspartate kinase III; Validated	82.75
PRK14631	174	hypothetical protein; Provisional	82.69
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	82.51
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	82.49
PRK08818	370	prephenate dehydrogenase; Provisional	82.36
PRK08210	403	aspartate kinase I; Reviewed	82.06
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	81.59
PRK14643	164	hypothetical protein; Provisional	81.57
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	81.5
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.49
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	81.4
PRK06291	465	aspartate kinase; Provisional	81.33
COG0779	153	Uncharacterized protein conserved in bacteria [Fun	81.3
PRK14632	172	hypothetical protein; Provisional	80.99
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	80.71
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	80.7
PRK09034	454	aspartate kinase; Reviewed	80.66
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	80.21

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=7.6e-28  Score=267.63  Aligned_cols=162  Identities=23%  Similarity=0.348  Sum_probs=148.9

Q ss_pred             CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457          208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT  286 (424)
Q Consensus       208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~  286 (424)
                      .+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|||++.+|.++. ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            57889999999999999999999999999999999999999999999998 56799999999999999884 56889999


Q ss_pred             HHHHHHHhhc---------C--------------------CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457          287 QCLIAAIERR---------V--------------------SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG  337 (424)
Q Consensus       287 ~~L~~al~rr---------~--------------------~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g  337 (424)
                      ++|+++|..+         .                    +.+|+|||.|.|||||||+|+++|.++|++|++|+|+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999998422         0                    1268999999999999999999999999999999999999


Q ss_pred             CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          338 EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       338 ~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ++|+|+|||++.+|.|++++.++.|+++|.+++
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999778899999999876

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.4e-27  Score=264.66  Aligned_cols=163  Identities=23%  Similarity=0.373  Sum_probs=148.4

Q ss_pred             CCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHH
Q 014457          207 CTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKL  285 (424)
Q Consensus       207 ~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l  285 (424)
                      ..+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|+++|+|||++.+|.++. ++++++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence            357889999999999999999999999999999999999999999999998 89999999999999999885 5688999


Q ss_pred             HHHHHHHHhhc-----------------CC-----------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457          286 TQCLIAAIERR-----------------VS-----------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG  337 (424)
Q Consensus       286 ~~~L~~al~rr-----------------~~-----------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g  337 (424)
                      ++.|.+++..+                 .|           +.|+|||.|.|||||||+|+++|.++|++|+.|+|+|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            99999988411                 01           269999999999999999999999999999999999999


Q ss_pred             CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          338 EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       338 ~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ++|+|+|||+|.+|.|++++..++|+++|.+++
T Consensus       821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            999999999999999999876699999888754

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6.4e-27  Score=259.46  Aligned_cols=182  Identities=16%  Similarity=0.208  Sum_probs=157.4

Q ss_pred             CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ++++.++|.|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++ .+|.++. ++++++|++.|.++|
T Consensus       671 ~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~aL  748 (854)
T PRK01759        671 NRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTKAL  748 (854)
T ss_pred             ecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHHHH
Confidence            477788999999999999999999999999999999999988 9999999999999 5899884 679999999999999


Q ss_pred             ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457          154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp  233 (424)
                      .+....     .    .     +  +|..      +..            ..+..+|.|.|+|..+..+|+|+|.++|||
T Consensus       749 ~~~~~~-----~----~-----~--~~~~------~~~------------~~~~~~~~V~~dn~~s~~~T~iev~a~Drp  794 (854)
T PRK01759        749 NTNKLK-----K----L-----N--LEEN------HKL------------QHFHVKTEVRFLNEEKQEQTEMELFALDRA  794 (854)
T ss_pred             cCCCCc-----c----h-----h--cccc------ccc------------cCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence            875421     0    0     0  0100      000            134567999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      |||++|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.+++++. .+.|++.|.++|
T Consensus       795 GLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~~l  853 (854)
T PRK01759        795 GLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEE-RKALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHH-HHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998754 499999988775

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=3.8e-26  Score=254.06  Aligned_cols=184  Identities=21%  Similarity=0.249  Sum_probs=158.4

Q ss_pred             CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ++++.++|.|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++ .+|.++. ++++++|++.|.++|
T Consensus       695 ~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~aL  772 (884)
T PRK05007        695 KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQAL  772 (884)
T ss_pred             ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHHHH
Confidence            367778999999999999999999999999999999999998 6779999999999 5888884 679999999999999


Q ss_pred             ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457          154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP  233 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp  233 (424)
                      .+....  .. ..            +|..      +.            ..++..+|.|.|+|..+..+|+|+|.++|||
T Consensus       773 ~~~~~~--~~-~~------------~~~~------~~------------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp  819 (884)
T PRK05007        773 TQSSPQ--PP-KP------------RRLP------AK------------LRHFNVPTEVSFLPTHTDRRSYMELIALDQP  819 (884)
T ss_pred             cCCCCC--cc-cc------------cccc------cc------------cCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence            876422  00 10            1110      00            0134567999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      |||++|+++|.++|++|..|+|+|.|+++.|+|||++.+|.+++ +++++.|++.|.+++.
T Consensus       820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998 5678999999988874

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.2e-25  Score=250.27  Aligned_cols=184  Identities=18%  Similarity=0.244  Sum_probs=158.4

Q ss_pred             CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCC-cHHHHHHHHHHHHHHHccC
Q 014457           79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPIT-APEMLAHVEEQLEIVVGAH  156 (424)
Q Consensus        79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~-d~~~~~~i~~~L~~~L~~~  156 (424)
                      .+.|.|.|+++||||||++|+++|+.+|+||++|+|.| .+|.+.|+|+|++ .+|.++. +++++++|++.|.++|.+.
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999977 8999999999999 4888854 4689999999999999986


Q ss_pred             CCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHH
Q 014457          157 HGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLL  236 (424)
Q Consensus       157 ~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL  236 (424)
                      ...  ...++        .|+.++.                      ..+..+|.|.+++..+.++|+|+|+++||||||
T Consensus       781 ~~~--~~~~~--------~~~~~~~----------------------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLL  828 (895)
T PRK00275        781 DDY--PTIIQ--------RRVPRQL----------------------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLL  828 (895)
T ss_pred             Ccc--chhhh--------hhhhhhc----------------------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHH
Confidence            532  11111        0111111                      133457999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457          237 FDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER  295 (424)
Q Consensus       237 ~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r  295 (424)
                      ++|+++|+.+|+||++|+|+|.|++++|+|||++.+|.++.++.++++|++.|.++|..
T Consensus       829 a~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        829 ARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             HHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998877899999999998853

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=4.2e-25  Score=245.97  Aligned_cols=186  Identities=22%  Similarity=0.305  Sum_probs=159.3

Q ss_pred             CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE-cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW-THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~-T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      +....++|.|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||++ .+|.++.+++++++|++.|.++|
T Consensus       662 ~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L  740 (850)
T TIGR01693       662 GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL  740 (850)
T ss_pred             ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence            34457899999999999999999999999999999999999 58999999999999 58999988888999999999999


Q ss_pred             ccCCCCCccceeeccCCCCCCcchhhh-hhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCC
Q 014457          154 GAHHGEGETRSVRLTTPMPGRTHTERR-LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDR  232 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~g~~h~err-l~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DR  232 (424)
                      .+......  .+.   .        ++ ..      +.            ..++..+|.|.|+|..++.+|+|+|.++||
T Consensus       741 ~~~~~~~~--~~~---~--------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~t~~~v~~~Dr  789 (850)
T TIGR01693       741 AGLAKDPD--TIS---A--------RRARR------RR------------LQHFAVPPRVTILNTASRKATIMEVRALDR  789 (850)
T ss_pred             cCCCcccc--ccc---c--------ccCCc------cc------------ccCCCCCCeEEEccCCCCCeEEEEEEECCc
Confidence            88643211  111   0        10 10      00            013456799999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ||||++|+++|+++|++|.+|+|.|.++.+.|.|||++..|.++.+ .+++.|++.|.+++
T Consensus       790 pGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       790 PGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             cHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999987 68899999998775

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=6e-25  Score=244.61  Aligned_cols=169  Identities=24%  Similarity=0.353  Sum_probs=147.6

Q ss_pred             CccEEEEeecCC---CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCC-CHHHH
Q 014457          208 TRTHVLIDSCKE---KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLD-TESQR  282 (424)
Q Consensus       208 ~~p~V~v~~~~~---~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~-~~~~~  282 (424)
                      ..|.|.+.+.++   .+++.|.|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++. ++.++
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            357777877765   58999999999999999999999999999999999987 77899999999999999854 44688


Q ss_pred             HHHHHHHHHHHhhc----------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEE
Q 014457          283 QKLTQCLIAAIERR----------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAE  332 (424)
Q Consensus       283 ~~l~~~L~~al~rr----------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~  332 (424)
                      ++|++.|.++|..+          .+                    ..|.|+|++.||||||++|+++|.++|++|+.|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            99999999887311          00                    2689999999999999999999999999999999


Q ss_pred             EeecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHhhhhhhccC
Q 014457          333 IGTNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGGSVLVVNKS  376 (424)
Q Consensus       333 i~T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~~~~~~~~~  376 (424)
                      |.|.|++++|+|||+|.+|.|+.+ +.++.|+++|.+.+....++
T Consensus       847 I~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~  891 (895)
T PRK00275        847 IATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEK  891 (895)
T ss_pred             EEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999976 47889999998877555443

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.93  E-value=1.2e-24  Score=242.46  Aligned_cols=163  Identities=29%  Similarity=0.352  Sum_probs=148.6

Q ss_pred             CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457          208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKGCFADQEYFIRQTDGCTLDTESQRQKLT  286 (424)
Q Consensus       208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~  286 (424)
                      ..|.|.+.+....++++|+|+++||||||++|+++|+.+|+||.+|+|+ |.+|+++|+|||++.+|.++.+++++++|+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            4688888887778999999999999999999999999999999999999 589999999999999999988877899999


Q ss_pred             HHHHHHHhhc------------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          287 QCLIAAIERR------------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       287 ~~L~~al~rr------------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                      +.|.++|..+            .+                    +.|.|+|.+.||||||++|+++|.++|++|++|+|+
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            9999988421            00                    269999999999999999999999999999999999


Q ss_pred             ecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          335 TNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       335 T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      |.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999888899999988764

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.6e-24  Score=241.23  Aligned_cols=188  Identities=24%  Similarity=0.361  Sum_probs=161.6

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      ++..+.|.|+|+++||||||++|+++|+.+||||++|+|+| .+|.+.|+|+|++ .+|.++.+++++++|++.|..++.
T Consensus       727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l~  805 (931)
T PRK05092        727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALS  805 (931)
T ss_pred             cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHc
Confidence            55667999999999999999999999999999999999998 8999999999999 488887788999999999999998


Q ss_pred             cCCCCCccceeeccCCCCCCcchhhh-hhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457          155 AHHGEGETRSVRLTTPMPGRTHTERR-LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP  233 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~g~~h~err-l~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp  233 (424)
                      +....  ...+.            +| ...     +   .         ..++..+|.|.|+|..+.++++|.|+++|||
T Consensus       806 ~~~~~--~~~~~------------~r~~~~-----~---~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~Drp  854 (931)
T PRK05092        806 GEVRL--PEALA------------KRTKPK-----K---R---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRP  854 (931)
T ss_pred             CCCCC--ccccc------------cccCcc-----c---c---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcC
Confidence            76432  11111            11 000     0   0         0134567999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER  295 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r  295 (424)
                      |||++|+++|+++|+||.+|+|.|.++++.|+|||++.+|.++.+++.++.|++.|.++|..
T Consensus       855 GLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        855 GLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             cHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998887899999999999853

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=4.7e-24  Score=236.24  Aligned_cols=182  Identities=19%  Similarity=0.187  Sum_probs=153.4

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      .+..+.+.|.|+++||||||++||++|+.+|+||++|+|.| .+|.+.|+|+|.++ .|.+   ++++.+|++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            45667899999999999999999999999999999999998 89999999999994 6654   3578889999999999


Q ss_pred             cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChh
Q 014457          155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPK  234 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpg  234 (424)
                      ++...  .. +.   .        ++..      +.            ...+..+|.|.+++..+.++|+|+|.++||||
T Consensus       761 ~~~~~--~~-~~---~--------~~~~------~~------------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        761 GDLQK--VR-PA---R--------RAVP------RQ------------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             CCCCc--cc-cc---c--------ccCc------cc------------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            86422  10 11   0        1110      00            01445679999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      ||++|+++|+.+|++|+.|+|+|.|++++|+|||++.+|.++.++++ +.|++.|.++|.
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998776544 999999988763

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=233.42  Aligned_cols=182  Identities=20%  Similarity=0.249  Sum_probs=151.7

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      ++..+.+.|.|+++||||||+.|+++|+.+|+||++|+|.| .+|.+.|+|+|.++ +|. ..+++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence            55668899999999999999999999999999999999976 89999999999994 666 5567899999999999999


Q ss_pred             cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChh
Q 014457          155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPK  234 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpg  234 (424)
                      ++.....  ...            +|..      +..            ..+..+|.|.+++..+.++|+|+|+++||||
T Consensus       751 ~~~~~~~--~~~------------~~~~------~~~------------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG  798 (856)
T PRK03059        751 EQAPLPE--PSK------------GRLS------RQV------------KHFPITPRVDLRPDERGQYYILSVSANDRPG  798 (856)
T ss_pred             CCCCcch--hhc------------cccc------ccc------------cCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence            8653211  010            1111      000            1345678999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      ||++|+++|+.+|+||+.|+|+|.|++++|+|||.+   .++.+++++++|++.|.++|.
T Consensus       799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999943   334566789999999988763

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.8e-24  Score=226.05  Aligned_cols=166  Identities=29%  Similarity=0.393  Sum_probs=149.2

Q ss_pred             CCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHH
Q 014457          207 CTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKL  285 (424)
Q Consensus       207 ~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l  285 (424)
                      ..+|.|.+...+..+.+.|+|+++|+|.||+.+|.++...|+||++|+|+| .+|++.|+|+|.+++|.++. +++...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence            457888888888889999999999999999999999999999999999988 78999999999999999887 5688888


Q ss_pred             HHHHHHHHh---------hcC----------C----------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457          286 TQCLIAAIE---------RRV----------S----------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN  336 (424)
Q Consensus       286 ~~~L~~al~---------rr~----------~----------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~  336 (424)
                      +..|.+++.         +|.          |          +.+.|||.+.||||||++|+++|.+++++|++|+|+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            888888873         111          1          26899999999999999999999999999999999999


Q ss_pred             CCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhh
Q 014457          337 GEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV  373 (424)
Q Consensus       337 g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~  373 (424)
                      |++|+|+|||++..|.+++++..+.+.+.+.++++..
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999998888888888888876543

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.1e-23  Score=231.67  Aligned_cols=179  Identities=20%  Similarity=0.201  Sum_probs=145.8

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      ++ .+.+.|.|+|+||||||++|+++|+.+||||++|+|+|.+|.+.|+|+|+++ .|.+.    .++++++.|.++|.+
T Consensus       595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~  668 (774)
T PRK03381        595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG  668 (774)
T ss_pred             CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence            45 6889999999999999999999999999999999999999999999999994 77643    358899999999998


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhH
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKL  235 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgL  235 (424)
                      ....  ...+.           +++..  +.+ +  .          ...+..+|.|.+++..+.++++|+|+++|||||
T Consensus       669 ~~~~--~~~~~-----------~~~~~--~~~-~--~----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGL  720 (774)
T PRK03381        669 DLDV--LARLA-----------AREAA--AAA-V--P----------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGL  720 (774)
T ss_pred             CCch--hhhhh-----------ccccc--ccc-c--c----------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhH
Confidence            5321  00110           01000  000 0  0          013446789999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          236 LFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       236 L~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      |++|+++|+++|+||.+|+|+|.|++++|+|||++.+|.++.++  ++.|++.|.
T Consensus       721 la~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        721 LARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            99999999999999999999999999999999999999998764  677766653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=2.3e-23  Score=230.70  Aligned_cols=160  Identities=21%  Similarity=0.265  Sum_probs=140.7

Q ss_pred             ccEEEEee-cCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457          209 RTHVLIDS-CKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT  286 (424)
Q Consensus       209 ~p~V~v~~-~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~  286 (424)
                      .|.|.+.. .+..+.+.|.|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|.+++|.+   +.++++|+
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~  752 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLA  752 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence            45565544 77789999999999999999999999999999999999998 789999999999998874   25688899


Q ss_pred             HHHHHHHhhc----------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457          287 QCLIAAIERR----------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN  336 (424)
Q Consensus       287 ~~L~~al~rr----------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~  336 (424)
                      +.|+++|..+          .+                    ..|.|+|.+.||||||++|+++|.++|++|+.|+|+|.
T Consensus       753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~  832 (869)
T PRK04374        753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF  832 (869)
T ss_pred             HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence            9999887421          01                    15899999999999999999999999999999999999


Q ss_pred             CCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhh
Q 014457          337 GEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVL  371 (424)
Q Consensus       337 g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~  371 (424)
                      |++++|+|||+|.+|.+++++..+.|+++|.+++-
T Consensus       833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999877655999999988663

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=5.6e-23  Score=226.00  Aligned_cols=154  Identities=25%  Similarity=0.302  Sum_probs=135.6

Q ss_pred             CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHH
Q 014457          208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQ  287 (424)
Q Consensus       208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~  287 (424)
                      ..|.|.+.+.+ .+.+.|+|+++||||||++||++|+.+|+||.+|+|+|.+|++.|+|+|.+++|.+.    .+++|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence            45788888888 899999999999999999999999999999999999998899999999999988754    2477777


Q ss_pred             HHHHHHhh----------c--C--C--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457          288 CLIAAIER----------R--V--S--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEI  333 (424)
Q Consensus       288 ~L~~al~r----------r--~--~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i  333 (424)
                      .|++++..          +  .  |                    ..++|+|.+.||||||++|+++|.++|+||+.|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            77766521          1  0  0                    14899999999999999999999999999999999


Q ss_pred             eecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          334 GTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       334 ~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                      .|.|++++|+|||+|.+|.+++++ ++.|+++|.
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999877 777777764

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=1.2e-22  Score=227.99  Aligned_cols=163  Identities=22%  Similarity=0.301  Sum_probs=147.5

Q ss_pred             CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457          208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT  286 (424)
Q Consensus       208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~  286 (424)
                      .++.|.+.+.++.+++.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|+++|+|+|.+.+|.+..+++++++|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            45788899988889999999999999999999999999999999999998 78899999999999998877778999999


Q ss_pred             HHHHHHHhh----------c-CC---------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          287 QCLIAAIER----------R-VS---------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       287 ~~L~~al~r----------r-~~---------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                      +.|++++..          + .+                     ..+.|+|.+.||||||++|+++|.++|++|..|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            999888721          1 11                     258999999999999999999999999999999999


Q ss_pred             ecCCceeeEEEEEeCCCCCCChH-HHHHHHHHHHhhh
Q 014457          335 TNGEKATGSFYVMDASGHDVNQR-TVELLKQEIGGSV  370 (424)
Q Consensus       335 T~g~~a~d~Fyv~d~~g~~v~~~-~~~~lr~~l~~~~  370 (424)
                      |.|+++.|+|||++.+|.++.++ .++.|+++|.+.+
T Consensus       878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L  914 (931)
T PRK05092        878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAAL  914 (931)
T ss_pred             EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999765 7788999988865

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.89  E-value=3.2e-22  Score=221.97  Aligned_cols=159  Identities=18%  Similarity=0.236  Sum_probs=138.3

Q ss_pred             CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457          208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT  286 (424)
Q Consensus       208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~  286 (424)
                      ..|.|.+.+.+..+.+.|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|.+++|. ...++++++|+
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            35777788888889999999999999999999999999999999999987 78999999999998887 44567899999


Q ss_pred             HHHHHHHhh----------cCC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457          287 QCLIAAIER----------RVS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN  336 (424)
Q Consensus       287 ~~L~~al~r----------r~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~  336 (424)
                      +.|.+++..          +.|                    ..|.|+|.+.||||||++|+++|.++|++|+.|+|.|.
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~  822 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL  822 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence            999998732          101                    25899999999999999999999999999999999999


Q ss_pred             CCceeeEEEEEeCCCCCC-ChHHHHHHHHHHHhhh
Q 014457          337 GEKATGSFYVMDASGHDV-NQRTVELLKQEIGGSV  370 (424)
Q Consensus       337 g~~a~d~Fyv~d~~g~~v-~~~~~~~lr~~l~~~~  370 (424)
                      |++++|+|||++.   +. +++.+++|++.|.+++
T Consensus       823 ~~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        823 GERVEDTFLIDGS---GLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             CCEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHh
Confidence            9999999999543   33 3457889999887743

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.3e-21  Score=205.75  Aligned_cols=181  Identities=24%  Similarity=0.319  Sum_probs=149.9

Q ss_pred             CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      +..+.|.|.|+++|+|.||+.+++.+...|+||++|+|.| .+|++.|+|+|+++ +|.++. +.|...++..|.+++..
T Consensus       680 ~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l~s  757 (867)
T COG2844         680 PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEALLS  757 (867)
T ss_pred             ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHHhc
Confidence            4447899999999999999999999999999999999998 89999999999995 888886 77878888888887765


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhH
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKL  235 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgL  235 (424)
                      ....  + ..+      +..  .|++                      ..+..+|.|.|.+.....+++++|.+.|||||
T Consensus       758 ~~~~--~-~~~------~r~--~r~~----------------------~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGL  804 (867)
T COG2844         758 GKAQ--P-PRR------RRI--PRKL----------------------RHFPIPPRVTILPTASNDKTVLEVRALDRPGL  804 (867)
T ss_pred             CCCC--C-ccc------ccc--Cccc----------------------ceeccCCceeeccccCCCceEEEEEeCCcccH
Confidence            4321  0 010      000  0111                      24567899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          236 LFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       236 L~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      |++++++|++++++|++|+|.|.|+.+.|+|||++..|.+++++ ..+.+.+.|.+++
T Consensus       805 La~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al  861 (867)
T COG2844         805 LAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL  861 (867)
T ss_pred             HHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998654 5566666665544

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.84  E-value=2.4e-20  Score=146.02  Aligned_cols=75  Identities=63%  Similarity=1.063  Sum_probs=72.8

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR  296 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr  296 (424)
                      ||+|+|.|+|||||||+|+++|+++|++|++|+|.|.|+++.|+|||++.+|.++.++.+.++|+++|.++|+||
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999999999999989999999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=1.8e-19  Score=141.16  Aligned_cols=74  Identities=23%  Similarity=0.283  Sum_probs=70.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      +|+|||.|+||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.|+.+++++++|++.|.++|..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 6999999999999999999988763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=1.6e-19  Score=140.43  Aligned_cols=69  Identities=16%  Similarity=0.327  Sum_probs=64.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGG  368 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~  368 (424)
                      .|+|||.+.||||||++|+++|+++|++|++|+|+|.|++++|+|||+|.+|+|+.+ +.++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            478999999999999999999999999999999999999999999999999999975 588999988764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=5.4e-19  Score=137.42  Aligned_cols=69  Identities=23%  Similarity=0.333  Sum_probs=65.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE  150 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~  150 (424)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++ .+|.|+.|+++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 59999999999999998874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=5.4e-18  Score=132.79  Aligned_cols=70  Identities=19%  Similarity=0.352  Sum_probs=65.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe--ecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHhhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG--TNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGGSVL  371 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~--T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~~~~  371 (424)
                      |+|||.+.|||||||+|+++|.++|++|++|+|+  |.|++++|+||| +.+|.|+.+ +.++.|+++|.++++
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 888999866 578999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=1e-17  Score=131.19  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE--cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW--THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~--T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      |+|+|.++||||||++|+++|+++|++|+.|+|.  |.|++++|+||| + .+|.++.|+++++.|++.|.++|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  999999999999 6 478899999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.1e-16  Score=125.89  Aligned_cols=73  Identities=52%  Similarity=0.902  Sum_probs=68.6

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCC-CCCCCcHHHHHHHHHHHHHHHcc
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLE-GRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~-g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      |+|+|+++||||||++|+++|+.+||||++|+|+|.++++.|+|||+++ + |.++.+++++++|++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999994 6 78888889999999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.64  E-value=1.4e-15  Score=119.05  Aligned_cols=72  Identities=33%  Similarity=0.459  Sum_probs=65.9

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      .+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|++.|+|||++ .+|.++.++++++++++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999996 799999999999 48888878899999999997764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=8.3e-15  Score=115.77  Aligned_cols=71  Identities=25%  Similarity=0.393  Sum_probs=64.8

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      .++|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||+++ .+. ..++++++++++.|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 99999999999994 665 55678999999999988864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.58  E-value=2.8e-14  Score=131.70  Aligned_cols=142  Identities=10%  Similarity=0.102  Sum_probs=110.3

Q ss_pred             CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh----
Q 014457          219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE----  294 (424)
Q Consensus       219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~----  294 (424)
                      ...+.+|++.|+|||||+++++.+|+++|+||.+.+....+|+..-.+.|   .+.+    ...++|+..|...-+    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCCh----hHHHHHHHHHHhhhhhcCe
Confidence            34689999999999999999999999999999999999988866556666   3322    356777777765431    


Q ss_pred             ----hcC-----C---CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC--ceeeEEEEEeCCCCCCChHHHH
Q 014457          295 ----RRV-----S---HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE--KATGSFYVMDASGHDVNQRTVE  360 (424)
Q Consensus       295 ----rr~-----~---~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~Fyv~d~~g~~v~~~~~~  360 (424)
                          ++.     +   ..+.++|.+.||||++++||++|+++|+||...+..|++.  ...+.|...-.-..|.+ ..++
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence                121     1   1489999999999999999999999999999999999985  68888888766566643 2345


Q ss_pred             HHHHHHHh
Q 014457          361 LLKQEIGG  368 (424)
Q Consensus       361 ~lr~~l~~  368 (424)
                      .|+++|.+
T Consensus       157 ~L~~~l~~  164 (190)
T PRK11589        157 NIEQAFKA  164 (190)
T ss_pred             HHHHHHHH
Confidence            55555554

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.55  E-value=3.3e-14  Score=111.30  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=65.8

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ++.|.|+++||||||++++++|+.+|+||.+|+|.|. +|+++|+|||++.+|.++.+++++++|++.|.+++
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999986 68999999999999998877788999999987753

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=4.5e-14  Score=110.98  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=67.3

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC-CCCCCCHHHHHHHHHHHHHHHh
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD-GCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      |+|+|+++||||||++|+++|+++|+||.+|+++|.++++.|+|||.+++ |.++.+++++++|++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999988 8888787889999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.52  E-value=1.1e-13  Score=109.45  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=59.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      .+||.+.||||||++|+++|.++|++|..|+|.| .++++.|+|||+|..|...+++.+++++++|.+.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999996 89999999999999877444456677777766543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.49  E-value=1.1e-12  Score=121.27  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCC
Q 014457           78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH  157 (424)
Q Consensus        78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~  157 (424)
                      ...+.+|+++|+||||+.+.|+++|+++||||.+.+.+..++.++-++.|+.+        +..++.++..|... ....
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l-~~~~   75 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLK-GAEL   75 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhh-hhhc
Confidence            45689999999999999999999999999999999999999999999999652        23557777776443 2221


Q ss_pred             CCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHH
Q 014457          158 GEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLF  237 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~  237 (424)
                      ++  .  +          +. +|..    +                 ..  .+       .....+.|+|++.|||||++
T Consensus        76 ~L--~--i----------~v-~~~~----~-----------------~~--~~-------~~~~~~~v~v~G~DrPGIV~  110 (190)
T PRK11589         76 DL--L--I----------VM-KRTT----A-----------------RP--RP-------AMPATVWVQVEVADSPHLIE  110 (190)
T ss_pred             Ce--E--E----------EE-Eecc----c-----------------cc--cc-------cCCceEEEEEEECCCCCHHH
Confidence            11  1  1          11 1110    0                 00  00       00113689999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEeeCC------eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          238 DTLCALTDLQYVVFHAAISSKGC------FADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       238 ~i~~~L~~~gl~I~~A~I~T~~~------~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      +++.+|+++|+||.+.+-.+.+.      ...-.|.|.-+.+..      .+.|+..|++.
T Consensus       111 ~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l  165 (190)
T PRK11589        111 RFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKAL  165 (190)
T ss_pred             HHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHH
Confidence            99999999999999999887542      333445555555543      34555555543

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.37  E-value=5.1e-12  Score=98.71  Aligned_cols=67  Identities=31%  Similarity=0.535  Sum_probs=61.0

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE  150 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~  150 (424)
                      |.|+|.++||||+|++|+++|+.+|+||++|+++|.++++.|+|+|++ .++.++ ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999998889999999999 478877 6788888888763

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.35  E-value=5.8e-12  Score=98.38  Aligned_cols=70  Identities=57%  Similarity=0.921  Sum_probs=64.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      ++.++|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|||.|.+|.+++++.++++++.|+.+
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~   70 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPA   70 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccc
Confidence            5789999999999999999999999999999999999889999999999999988656888899988853

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.33  E-value=1e-11  Score=95.44  Aligned_cols=65  Identities=22%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ..|.|+++||||||++++++|+.+|+||.+|+|.| .+|+++|+|+|.+.+|.      +.+.|++.|++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            58999999999999999999999999999999997 78999999999998876      2355666666654

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.32  E-value=1.6e-11  Score=94.65  Aligned_cols=70  Identities=37%  Similarity=0.637  Sum_probs=63.4

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      |.|+|.++||||+|++|+++|+++|+||.++++.|.++.+.|+|++++ ..|.+. +.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            679999999999999999999999999999999998889999999999 478874 6689999999987653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.31  E-value=9.6e-12  Score=110.64  Aligned_cols=141  Identities=16%  Similarity=0.158  Sum_probs=112.3

Q ss_pred             CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-----H-
Q 014457          220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-----I-  293 (424)
Q Consensus       220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-----l-  293 (424)
                      .+|.+|+++++||||++..+++...+.||||.++++...|+...-+..|   .|.    ++...+|+..|...     | 
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence            4689999999999999999999999999999999999988765444444   443    35677777777542     1 


Q ss_pred             ---hhcC-------CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEEEeCCCCCCChHHHHH
Q 014457          294 ---ERRV-------SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYVMDASGHDVNQRTVEL  361 (424)
Q Consensus       294 ---~rr~-------~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv~d~~g~~v~~~~~~~  361 (424)
                         .|.-       +..+.++|.+.||||++.++|++|.++|++|+.....|+.  ......|++.-.-+.|++ -.+..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence               1111       1268999999999999999999999999999999998886  447789999777788875 45577


Q ss_pred             HHHHHHh
Q 014457          362 LKQEIGG  368 (424)
Q Consensus       362 lr~~l~~  368 (424)
                      |+++|.+
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            7777776

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.25  E-value=5.2e-11  Score=91.58  Aligned_cols=65  Identities=23%  Similarity=0.353  Sum_probs=54.8

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..|.|+++||||||++|+++|+.+|+||++|+|.| .+|.+.|+|+|.++ +|.   ++   +.+++.|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~---~~---~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG---ET---AALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc---ch---HHHHHHHHHhh
Confidence            47899999999999999999999999999999997 79999999999994 664   22   45566665554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=103.41  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCC
Q 014457           78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH  157 (424)
Q Consensus        78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~  157 (424)
                      .+++.+|+++|.||||+...|+++..++|||+.++++.++|+.++-+..|+.+        ++...++++.| ..+..+.
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l-~~l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATL-PLLGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHh-hcccccC
Confidence            35579999999999999999999999999999999999999999999999773        35567788877 3344333


Q ss_pred             CCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHH
Q 014457          158 GEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLF  237 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~  237 (424)
                      +.    .+.++|.  + .|    .+                           +       ...-.+.|.|.+.|||||++
T Consensus        73 ~L----~v~m~rt--~-~~----~~---------------------------~-------a~~~~v~v~v~a~DrpgIv~  107 (176)
T COG2716          73 DL----LVVMKRT--G-AH----PT---------------------------P-------ANPAPVWVYVDANDRPGIVE  107 (176)
T ss_pred             Ce----EEEEeec--C-CC----cc---------------------------C-------CCCceEEEEEEecCCccHHH
Confidence            32    1222121  0 00    00                           0       01124689999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          238 DTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       238 ~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ++|..|..+|+||.+....|.  .+.-.--|.+.-.-+-|.+-  ....|++.+++.
T Consensus       108 ~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al  162 (176)
T COG2716         108 EFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEAL  162 (176)
T ss_pred             HHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHH
Confidence            999999999999999888772  22222234443333333322  345566666654

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.21  E-value=1.2e-10  Score=126.27  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=102.1

Q ss_pred             EEEEEEe-cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCC---
Q 014457          223 SVVNIKC-IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS---  298 (424)
Q Consensus       223 tvV~V~~-~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~---  298 (424)
                      ..++|.. +|+||+|.+++++|+.++++|.+|++.+ +|.+..+|.|....|.+.++    ..+++.+..++....|   
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  621 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA  621 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence            4777777 9999999999999999999999999999 88888999999988887644    5677777777654422   


Q ss_pred             --------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457          299 --------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM  347 (424)
Q Consensus       299 --------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~  347 (424)
                              .++++||++.||+|+|+.|+++|-    .|..|+++|.|..++|.||++
T Consensus       622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence                    268999999999999999999999    899999999999999999997

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.21  E-value=2e-10  Score=124.66  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=114.7

Q ss_pred             EEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCC
Q 014457           82 TALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG  160 (424)
Q Consensus        82 t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~  160 (424)
                      -.++|.. +|+||+|++++++|+.++++|++|++.+ +|.+...|.|.. ..|.+. ||   ..+++++...+.++... 
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~-  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD-  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc-
Confidence            4777777 9999999999999999999999999999 999999999998 477754 45   56777887777665322 


Q ss_pred             ccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHH
Q 014457          161 ETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL  240 (424)
Q Consensus       161 ~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~  240 (424)
                          +.                                        ..+|.|.|..      ++++|++.||||+|+.++
T Consensus       620 ----~~----------------------------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~  649 (693)
T PRK00227        620 ----PA----------------------------------------PGITATFWHG------NILEVRTEDRRGALGALL  649 (693)
T ss_pred             ----cc----------------------------------------CCCCceEeeC------cEEEEEeCccccHHHHHH
Confidence                00                                        1236666653      799999999999999999


Q ss_pred             HHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       241 ~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ++|.    +|.+|++.|.|..++|.||+..  |      ..+.++++.+.+++
T Consensus       650 ~~l~----~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~  690 (693)
T PRK00227        650 GVLP----DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL  690 (693)
T ss_pred             HHhh----hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence            9999    8999999999999999999971  1      13566766666654

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.21  E-value=1.2e-10  Score=89.70  Aligned_cols=69  Identities=41%  Similarity=0.636  Sum_probs=62.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      |.++|.+.||||+|++|+++|.++|++|.++++.|.++.+.|+||+.+.+|.|.+.+..+.|++.|.+.
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999889999999999999997666778888887653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.98  E-value=5e-09  Score=80.13  Aligned_cols=69  Identities=43%  Similarity=0.682  Sum_probs=60.4

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      +.|.|.++|+||+|++|+++|+++|++|.++.+.|.+++..++|+|.++ ++.+ .+++++++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            4688999999999999999999999999999999977799999999984 6665 4567889999988664

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.87  E-value=2.2e-08  Score=76.52  Aligned_cols=69  Identities=30%  Similarity=0.401  Sum_probs=60.9

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      +.|.|.++|+||+|++++++|+.+|++|.++.+.+.+++..+.|+|..+++.. .+++++++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence            36889999999999999999999999999999999766999999999988776 4557889999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.78  E-value=3.5e-08  Score=77.76  Aligned_cols=66  Identities=26%  Similarity=0.436  Sum_probs=55.3

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      +.+|+++|+||||+++.++++|+++||||.+.+.++.++++.-++.|+-+        ++..++++++|.+...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999873        3466888888866543

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.48  E-value=1.9e-06  Score=67.79  Aligned_cols=65  Identities=14%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      +.+|+|.|+||||++++++.+|+++|+||.+.+..+.++...-.+.|.-+       ++..++|+..|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999877777777443       346788888887653

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.38  E-value=1.7e-06  Score=68.37  Aligned_cols=63  Identities=24%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      +.+|.+.|+||||+.++|+++|+++||||.+.+.++.++++.-.+.+.-+ .   .    ..+.+++.|..
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-~---~----~~~~l~~~l~~   63 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-W---D----AIAKLEAALPG   63 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-c---c----cHHHHHHHHHH
Confidence            36789999999999999999999999999999999999988777766642 1   1    23677777755

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.38  E-value=7.1e-07  Score=67.27  Aligned_cols=39  Identities=21%  Similarity=0.495  Sum_probs=36.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK  339 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~  339 (424)
                      |.+.+.++||||+|++|+++|.++|+||..+...+.++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            578999999999999999999999999999999998876

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.37  E-value=1.2e-06  Score=68.65  Aligned_cols=64  Identities=22%  Similarity=0.233  Sum_probs=52.5

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      +|++.|+||||++++++++|+++||||.+.+..+.++++...|.|.-| .+.      ..+.+++.|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence            378999999999999999999999999999988888999999988764 321      2366777775543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.36  E-value=3.3e-06  Score=63.57  Aligned_cols=61  Identities=25%  Similarity=0.402  Sum_probs=46.8

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCc--eEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKT--RAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~--r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      +.|.+.++||||+|++|+.+|+++|+||..+.+.+.++  ....++.+.+         ....+++.+.|.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999655  4444444444         2344556666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.23  E-value=6.5e-06  Score=64.52  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=50.8

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      +|+|.++||||++++++++|+++|+||.+.+..+.+++..-.|.+.-+.+.      ..+.|++.|++..
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence            478999999999999999999999999999988877766667777655442      2466777776543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.20  E-value=5.8e-06  Score=61.54  Aligned_cols=67  Identities=13%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      ++|+|.++|+.||=.+|++++.+.|++|..+.+.|.|....-+|+|... . ..+  +-+|+.++++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999999999999873 3 223  45899999998654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.19  E-value=4.1e-05  Score=64.41  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-HhhcCCCceE
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-IERRVSHGLR  302 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l~rr~~~~~~  302 (424)
                      .|+|...++||-|..++.+|...|+||..-+|.-.+++-+-.+.|..        +   +.-.+.|+++ +.  +...-+
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~--------~---d~A~~~Lee~gF~--Vr~~dV   71 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR--------P---DEAHSVLEEAGFT--VRETDV   71 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC--------h---HHHHHHHHHCCcE--EEeeeE
Confidence            68899999999999999999999999999999877777666665522        1   1222344432 10  112457


Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEe
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMD  348 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d  348 (424)
                      +-|..+|+||=|+.|..+|-+.++|+.++..-+ ..++|.=.|.+.|
T Consensus        72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence            888999999999999999999999999877643 3466666665533

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.16  E-value=1.4e-05  Score=63.01  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=47.1

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      .+|++.|+||||++++|+..|+++|+||.+.+.+..++...-...+..   ..    ...+.|++.|++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~---~~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG---SW----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe---cc----ccHHHHHHHHHH
Confidence            689999999999999999999999999999999997775533333322   11    134566666655

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.08  E-value=1.1e-05  Score=65.19  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..|++.|+||||++++|+++|+++||||.+.+..+.++++...+.+.-+ . ...    ..+.+++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~~----~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SNL----DFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CCC----CHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999988888888888753 2 011    2366777775543

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=1.9e-05  Score=61.60  Aligned_cols=65  Identities=15%  Similarity=0.215  Sum_probs=46.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +|.+.++||||++++||++|+++|+||...+..+..  ....|++.-.-..|-.+..++.|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            378999999999999999999999999998887732  33468885443333211135566655544

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.95  E-value=4.6e-05  Score=60.12  Aligned_cols=63  Identities=24%  Similarity=0.291  Sum_probs=48.1

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC------ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK------TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~------~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      .|++.|+|+||++++|+++|+++||||.+.+..|.+      +++.-.+.+.-+ .+  +    ..+.+++.|...
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l   69 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEEL   69 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHH
Confidence            378999999999999999999999999999999966      556666666553 21  1    136677777553

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.94  E-value=3.1e-05  Score=62.72  Aligned_cols=65  Identities=22%  Similarity=0.305  Sum_probs=51.0

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ...|++.|+||||++++|+++|+++||||.+.+-.+.++++...+.+.-+  +.+. +   .+.+++.|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH
Confidence            57899999999999999999999999999999998888887776666542  2122 1   2566666654

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.90  E-value=3.6e-05  Score=62.15  Aligned_cols=64  Identities=11%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC-CCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD-GCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~a  292 (424)
                      .+|++.|+||||++++++++|+++|+||.+.+..+.++...-.+.+..+. +.      ..+.|++.|+..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~------~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNL------DFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCC------CHHHHHHHHHHH
Confidence            48999999999999999999999999999999988777655555554432 11      245666666553

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.87  E-value=6.3e-05  Score=58.62  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      +|++.|+||||++++|+++|+++||||.+.+.++  .++...-.+.+.-+ .+ ++    ..+.+++.|...
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~~----~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-DL----SREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-CC----CHHHHHHHHHHH
Confidence            4789999999999999999999999999999987  33333333333221 11 01    246777777553

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.84  E-value=0.00012  Score=57.77  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG  259 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~  259 (424)
                      +|+|.|+|+||++++|+..|+++|+||.+.+..+.+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~   36 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS   36 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence            478999999999999999999999999999998865

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.82  E-value=7.4e-05  Score=60.47  Aligned_cols=65  Identities=8%  Similarity=0.125  Sum_probs=48.2

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +++|+|.|+||||++++++..|+++|+||.+.+-.+.++...-.+.+.-+. .+.    ..+.|++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~----~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKK----DFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCC----CHHHHHHHHHH
Confidence            579999999999999999999999999999999888777655544443321 111    23556665554

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.82  E-value=7e-05  Score=55.85  Aligned_cols=67  Identities=18%  Similarity=0.278  Sum_probs=57.1

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ++|+|.|||+.||=.|+++++.+.|++|..+.++|.|...+-+|+|...... +  .-++..|++.|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999754322 2  13788888888754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.65  E-value=0.0002  Score=56.51  Aligned_cols=61  Identities=28%  Similarity=0.427  Sum_probs=46.5

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      +.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.|.-       .|.+.+..+-+.|
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L   69 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence            679999999999999999999999999999999994  677777777654       2345555555444

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.61  E-value=0.00036  Score=55.05  Aligned_cols=63  Identities=14%  Similarity=0.107  Sum_probs=48.6

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      .+.+.|.+.||||+|++|+.+++++|+||.+..+.+  .++.+.-.|.|.-.      +.+.++.|.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence            458899999999999999999999999999999998  36777777777432      3346677766664

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.46  E-value=0.00096  Score=51.51  Aligned_cols=59  Identities=14%  Similarity=0.233  Sum_probs=45.4

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      |.+.+.||||+|++|+.++++.|+||.+....+. ++.+...|.+.-       .+.+.++.+...|
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L   61 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAV   61 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHH
Confidence            6899999999999999999999999998887764 466665565543       2345666666665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.40  E-value=0.00089  Score=66.07  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=51.9

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      .+..|++.|+||||+.++|+++|+++||||.+.+.++  .++.+.-.+.+.-  +..+.    .++.|++.|.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~----~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIF----NLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCC----CHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999  7776666555543  11222    257777777543

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.40  E-value=0.0033  Score=62.14  Aligned_cols=104  Identities=12%  Similarity=0.113  Sum_probs=63.3

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCC-eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGC-FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER---  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~-~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r---  295 (424)
                      ..+|+|.|+|||||.+.|+..|+++|+||.+.+-.+  ..+ +.. .+.+.......+    ..+.|++.|.+.-++   
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l   83 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM   83 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence            469999999999999999999999999999999873  222 221 111211111112    245666666554321   


Q ss_pred             -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEE
Q 014457          296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSM  330 (424)
Q Consensus       296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~  330 (424)
                           ...+..+|-|..--+.--|.++.....+..++.+=
T Consensus        84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i  123 (289)
T PRK13010         84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDI  123 (289)
T ss_pred             eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEE
Confidence                 11223344444444555677777777766665443

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.39  E-value=0.0014  Score=50.59  Aligned_cols=61  Identities=10%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +.|.+.||||+|++|+.++++.|.||.+....+. .+.+.-.|.+.-      .+...++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHhc
Confidence            6789999999999999999999999999888764 466666666632      223466777777653

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.35  E-value=0.00027  Score=56.97  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      ..+|+|+|.||||+.+.|+++|+++|+||++-.-+-..|++.-.+.|.-+ . .    ......+++.|....+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~-~-~----~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS-K-E----VVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC-h-H----hccHHHHHHHHHHHHH
Confidence            46899999999999999999999999999998877788998888888542 1 1    1123566666655544

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.32  E-value=0.0059  Score=60.27  Aligned_cols=106  Identities=10%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER----  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r----  295 (424)
                      ..+|+|.|+|||||+++++..|+++|+||.+.+..+.  +++..-.+.+..+.+.      ..+.|++.|++.-+.    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            4689999999999999999999999999999999863  2333334444334332      245666666654321    


Q ss_pred             ----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457          296 ----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEI  333 (424)
Q Consensus       296 ----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i  333 (424)
                          ...+..+|-|.+--+---|..+...+....++.+=+-+
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v  122 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV  122 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence                11123345554444555677777777766655443333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.28  E-value=0.0071  Score=59.74  Aligned_cols=102  Identities=18%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER---  295 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r---  295 (424)
                      ...+|+|.|+|||||+++|+.+|+++|+||.+.+..+  .+|...-.+.+.. +..+.    ..+.|++.|++.-+.   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence            3579999999999999999999999999999999998  6664322333321 11121    256677777654321   


Q ss_pred             -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCce
Q 014457          296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLS  327 (424)
Q Consensus       296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~  327 (424)
                           ..++..+|-|.+--+---|..+-.......++
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~  116 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP  116 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence                 11123334444443444455555555554443

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.27  E-value=0.0022  Score=50.62  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=46.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +.+.+..+|+||.|++|...|+++|+||.+......++ ...=.|||.- +|. .+.+.++.+-+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC-CCCHHHHHHHHHHHH
Confidence            45778889999999999999999999999987766543 4556788843 354 333333333344444

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.25  E-value=0.019  Score=48.67  Aligned_cols=124  Identities=16%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCCcc
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGET  162 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~~~  162 (424)
                      .|.+...++||=|+.++.+|.+.|+||..-.|.-.++--.--+.|.+         |+..       ..+|...      
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~A-------~~~Lee~------   62 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDEA-------HSVLEEA------   62 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHHH-------HHHHHHC------
Confidence            57889999999999999999999999988777655543333333332         1110       1111110      


Q ss_pred             ceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHH
Q 014457          163 RSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCA  242 (424)
Q Consensus       163 ~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~  242 (424)
                                |                                    -.|.+       ..++-|..+|+||=|..|+.+
T Consensus        63 ----------g------------------------------------F~Vr~-------~dVlaVEmeD~PG~l~~I~~v   89 (142)
T COG4747          63 ----------G------------------------------------FTVRE-------TDVLAVEMEDVPGGLSRIAEV   89 (142)
T ss_pred             ----------C------------------------------------cEEEe-------eeEEEEEecCCCCcHHHHHHH
Confidence                      0                                    01111       348888999999999999999


Q ss_pred             HHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          243 LTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       243 L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      |.+.++|+...-.++ ....|+-.|-+           +..++.++.|+.+
T Consensus        90 l~d~diNldYiYAFv~ek~KAlli~r~-----------ed~d~~~~aLed~  129 (142)
T COG4747          90 LGDADINLDYIYAFVTEKQKALLIVRV-----------EDIDRAIKALEDA  129 (142)
T ss_pred             HhhcCcCceeeeeeeecCceEEEEEEh-----------hHHHHHHHHHHHc
Confidence            999999999998887 44566655444           3455666666654

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.24  E-value=0.0081  Score=59.10  Aligned_cols=102  Identities=12%  Similarity=0.126  Sum_probs=67.6

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR-----  296 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr-----  296 (424)
                      +|+|.|+|||||++.|++.|+++|+||.+.+.+..  +++..-.+.+..+ +..+    ..+.|++.|.+++..+     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999999999999998874  3544444444322 2122    2456777776633211     


Q ss_pred             ----CCCceEEEEEeCCCCchHHHHHHHHHHCCceEEE
Q 014457          297 ----VSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSM  330 (424)
Q Consensus       297 ----~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~  330 (424)
                          ..+..+|-|..--+---|.+|.....+..++..=
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i  114 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEI  114 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEE
Confidence                1123445555555556778888888777665443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.18  E-value=0.0019  Score=58.93  Aligned_cols=66  Identities=18%  Similarity=0.359  Sum_probs=50.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..+.|.+.|+||+|++|+.+|+.+|+||.+..+..........+.+.-.    -++..+++|+++|.+.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GDDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999998886644444445555432    22334788888888744

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.18  E-value=0.00056  Score=55.10  Aligned_cols=67  Identities=12%  Similarity=0.069  Sum_probs=46.8

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ..+|+|.++||||+.++++++|+++|+||.+-.-.-..++.--.+.|..+...     .....+++.|.+..
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~-----~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEV-----VDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHh-----ccHHHHHHHHHHHH
Confidence            46899999999999999999999999999986544455655444555222111     23456666666544

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.15  E-value=0.003  Score=47.95  Aligned_cols=46  Identities=24%  Similarity=0.391  Sum_probs=38.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD  348 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d  348 (424)
                      .++.|..+|+||.|++|+.+|.++|+||.+..+...+++  ..|.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            368889999999999999999999999999988766553  5666533

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.15  E-value=0.0016  Score=64.34  Aligned_cols=67  Identities=15%  Similarity=0.266  Sum_probs=47.4

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE--cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW--THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~--T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      +.+|++.|+||||+.+.|+++|+++||||.+..-.  +..+...-.+.+.+. ....+    ..+.+++.|.++
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~l   77 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQPV   77 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHHH
Confidence            56899999999999999999999999999999987  444554444334431 11122    235667776553

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.06  E-value=0.0033  Score=48.86  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH  117 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~  117 (424)
                      .|+|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999876

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.05  E-value=0.0049  Score=46.49  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-----CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-----KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-----~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      +.|..+|+||+|++|+.+|+++|+||.+......     .+.+...|.+..       .+.+.++.+.+.|
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l   64 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAAL   64 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHH
Confidence            4578899999999999999999999997776543     344444444433       1234555555554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.03  E-value=0.0015  Score=64.50  Aligned_cols=66  Identities=14%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .+.+.|.++||||++++||++|+++|+||....-.  .+...+.|+..-.-..|-. ...+.|+++|..
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~--~~~~~~~F~m~~~~~~p~~-~~~~~L~~~L~~   72 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF--DDRLSGRFFMRVEFHSEEG-LDEDALRAGFAP   72 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee--ecCCCCeEEEEEEEecCCC-CCHHHHHHHHHH
Confidence            56899999999999999999999999999996554  4446667776433222211 124555555444

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=96.97  E-value=0.004  Score=61.26  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      +|++.|+||||+.+.|+++|+++||||.+...++.  ++++.-.+.+.-+  +.++    ..+.+++.|.+++..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~   70 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAE   70 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999998884  4777766666542  2123    136677777663443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.96  E-value=0.0042  Score=46.53  Aligned_cols=44  Identities=20%  Similarity=0.330  Sum_probs=37.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEE
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYV  346 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv  346 (424)
                      +.+.+.|++|+|++|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  445555655

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.95  E-value=0.0048  Score=55.47  Aligned_cols=66  Identities=18%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..|.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-. |   ++..+++|.++|.+.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~-~---d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV-G---DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhcCc
Confidence            4689999999999999999999999999998887665444433433221 3   3568899999998843

acetohydroxyacid synthase is a synonym.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.94  E-value=0.0026  Score=46.43  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=39.6

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEec
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIED  129 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~d  129 (424)
                      |.+...|+||.|++++.+|.++|+||.+..+...+ +++.-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999988855 77777777655

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK07431 aspartate kinase; Provisional

Probab=96.92  E-value=0.34  Score=52.69  Aligned_cols=217  Identities=16%  Similarity=0.228  Sum_probs=124.5

Q ss_pred             CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      .+...|.++|.   ++||+++++..+|++.|++|....  |. + ..-.|.|..          +..++.-+.|++.+.-
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS-e-~~Is~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS-E-VKVSCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC-C-CEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence            45778999986   799999999999999999997655  32 2 222233432          1223444556665543


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEE-ecCChh
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIK-CIDRPK  234 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~-~~DRpg  234 (424)
                      ....   ..+.   +    +    +..        .+.             ..-+.|..    .++...|++. .++.||
T Consensus       412 ~~~~---~~~~---~----~----~~~--------~~~-------------~~v~gIa~----~~~~~~i~l~~~~~~~g  452 (587)
T PRK07431        412 EDSQ---IEIN---P----T----ASG--------QDE-------------PEVRGVAL----DRNQAQLAIRNVPDRPG  452 (587)
T ss_pred             CCcc---cccC---c----c----ccC--------CCC-------------CcEEEEEc----cCCEEEEEECCCCCCcc
Confidence            2111   0010   0    0    000        000             01122222    2345666664 678899


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEe-eC--CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCC--------CceEE
Q 014457          235 LLFDTLCALTDLQYVVFHAAISS-KG--CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS--------HGLRL  303 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T-~~--~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~--------~~~~l  303 (424)
                      +++++...|+++|++|..-.... .+  |..--.|.+..         ....++.+.+++ +.++.+        .-..+
T Consensus       453 ~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~---------~~~~~~~~~l~~-l~~~~~~~~i~~~~~va~V  522 (587)
T PRK07431        453 MAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK---------EDREAAQKVLRE-LAKQLPGAEVEDGPAIAKV  522 (587)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH---------HHHHHHHHHHHH-HHHhcCCceEEEeCCeEEE
Confidence            99999999999999999875532 22  22223355522         222333333333 222221        24568


Q ss_pred             EEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457          304 EICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       304 ev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                      .+.+.   .+||+++++.++|.++|++|....  |   ...+..++.+...   .++.+..|.++|
T Consensus       523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~~~~---~~~av~~Lh~~f  580 (587)
T PRK07431        523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVAEDD---GVKALQAVHQAF  580 (587)
T ss_pred             EEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEeHHH---HHHHHHHHHHHh
Confidence            88776   889999999999999999997733  3   5556544444310   012455555554

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.89  E-value=0.0068  Score=45.68  Aligned_cols=61  Identities=11%  Similarity=0.140  Sum_probs=41.7

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-----GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-----~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +.|.++|+||+|++++.+|++.|+||.+......     .+++.-.|.+..      .+...++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~------~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET------RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            3578899999999999999999999998776543     244433333322      122456666666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.89  E-value=0.0061  Score=48.04  Aligned_cols=65  Identities=11%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      +.|.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-++-. |   ++..+++|.++|.+-
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCC
Confidence            4688999999999999999999999999998876433433333333211 1   245778888888773

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.88  E-value=0.0032  Score=45.95  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=38.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEe
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMD  348 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d  348 (424)
                      +.+...|+||.|.+++..|.++|+||.+..+...+ +.+.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999887665 56666666643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.84  E-value=0.0049  Score=46.38  Aligned_cols=62  Identities=16%  Similarity=0.387  Sum_probs=44.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec-CCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN-GEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .|.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+.   + + ..++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence            47889999999999999999999999999988765 3333333333333   1 2 455666666554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.81  E-value=0.0084  Score=45.94  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED  129 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d  129 (424)
                      .|.+.+.|+||+|++|+.+|+++|+||......+. ++..+.+.+++.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~   49 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH   49 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence            47889999999999999999999999999887664 323344444444

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.81  E-value=0.018  Score=47.28  Aligned_cols=65  Identities=3%  Similarity=0.021  Sum_probs=47.4

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      +...+.+...|+||+|.+|++.|+..||||.+..+.- .. +...-++.+ .  +     +...+.|.+.|++.+
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~--~-----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N--D-----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c--C-----chHHHHHHHHHhCCc
Confidence            3457999999999999999999999999999998864 33 333323323 1  1     146777888777654

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.79  E-value=0.0098  Score=45.88  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED  129 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d  129 (424)
                      .|.+.+.||||+|++|+.+|+++|+||......+ .++.+.-.|.+.-
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v   49 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT   49 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence            5789999999999999999999999999987655 3455556666643

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.74  E-value=0.011  Score=45.93  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=43.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          304 EICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       304 ev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      -+..+|+||-|++|..+|+++|+||.+.+-.... ....-.||| +..|.+ ++..++.+-+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCC-CCHHHHHHHHHHHH
Confidence            4556899999999999999999999997655433 356678888 444542 23344444455544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.73  E-value=0.0077  Score=46.79  Aligned_cols=58  Identities=17%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      .+.|.+.||+|+|++|+.++++.|+||.+..+.+. +...-.+.+        .+...++.+.+.|.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v--------~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPT--------IEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEe--------cCHHHHHHHHHHHh
Confidence            47899999999999999999999999999998775 442222222        12245666666664

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.73  E-value=0.0073  Score=48.37  Aligned_cols=67  Identities=9%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..|.+...|+||+|++|+..|...|+||.+..++...+...-.+-++-..|   ++..++++.++|.+.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence            368889999999999999999999999999998866566555554433212   3457889999988854

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.73  E-value=0.0096  Score=47.67  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      .+.+...|+||.|+++++.|+..||||.+..+.. .. +...-++.+  ..|    ++...+.|.+.|.+.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv--~~~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV--DIQ----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE--eCC----CHHHHHHHHHHHhCCc
Confidence            6889999999999999999999999999999965 33 333333333  112    3456778888877654

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.64  E-value=0.017  Score=44.23  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=42.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .|.+.+.|+||+|.+|+++|.++|++|......+..+ ......++++    ..+...++.+-+.|..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence            4788999999999999999999999999987765432 2222233333    2233455555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.64  E-value=0.01  Score=48.67  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ...|.+-..|+||+|++|+-.|+..|.||.+..+.-.++...-.+.+.-.     ++..++++.++|.+.+
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLE   73 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCCc
Confidence            46799999999999999999999999999998887666655555555332     2357899999988854

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.61  E-value=0.017  Score=43.33  Aligned_cols=47  Identities=17%  Similarity=0.278  Sum_probs=36.7

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED  129 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d  129 (424)
                      .|.+.+.|+||+|++|+.+|+++|++|.+....+. ++....+.+..+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            47789999999999999999999999999988775 333333333333

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.58  E-value=0.013  Score=52.91  Aligned_cols=66  Identities=17%  Similarity=0.414  Sum_probs=49.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..|.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-. |   ++..++++.++|.+-+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~---~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G---DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhccc
Confidence            4689999999999999999999999999998776554333333333221 2   3567889999988843

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.56  E-value=0.02  Score=43.48  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEEE
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYVM  347 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv~  347 (424)
                      +.+.+..+|+||.|+++++.|+++|++|.........  ....-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4578899999999999999999999999988766552  2344455554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.56  E-value=0.013  Score=46.10  Aligned_cols=63  Identities=11%  Similarity=0.114  Sum_probs=46.4

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ..+.+...|+||+|+++++.|+..|+||.+..+. |.. +...-++.+ .  |    ++...+.|.+.|.+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~--~----~~~~i~qi~kQL~KL   67 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-V--C----TENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-E--C----CHHHHHHHHHHHhCC
Confidence            3689999999999999999999999999999986 433 333333333 1  2    235677787777654

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.56  E-value=0.013  Score=43.89  Aligned_cols=33  Identities=12%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEee
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT  335 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T  335 (424)
                      |.+.+.|+||.|.+|++.|.++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678899999999999999999999999987765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.55  E-value=0.0094  Score=45.17  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEE
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYI  127 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V  127 (424)
                      ..|.|..+|+||.|++|+.+|+++|+||.+..+...++.  .++.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            357889999999999999999999999999998776654  44444

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.53  E-value=0.016  Score=44.62  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=45.1

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      .+.|.++|+||++++|+.+|+++|+||......+. ++++.-.|.+...+.     +..+++|.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhc
Confidence            57899999999999999999999999999877553 455555565533211     1255666666653

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.52  E-value=0.016  Score=45.71  Aligned_cols=61  Identities=23%  Similarity=0.355  Sum_probs=46.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc--eeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK--ATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +.|.+...|+||.|++|+++|+..|.||.+..+.-..+.  ..=++-+ .      ++..+++|.++|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc
Confidence            578999999999999999999999999999888753322  2223333 2      23467788888777

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.51  E-value=0.0086  Score=44.77  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC--ceEEEEEEEec
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK--TRAACIFYIED  129 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~--~r~~dvf~V~d  129 (424)
                      +.+.+.|+||+|++|+.+|+++|+||.+......+  +...-.|.+.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~   49 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS   49 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence            67899999999999999999999999999988854  66666676633

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.49  E-value=0.015  Score=56.09  Aligned_cols=66  Identities=24%  Similarity=0.388  Sum_probs=47.2

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ...++++.|+|+||+.+.|++.|+++||||..+.-+|.  .+++.--.....  .+.+.    ..+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence            45799999999999999999999999999999999873  445432222222  23332    23666666655

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.47  E-value=0.01  Score=44.19  Aligned_cols=45  Identities=11%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM  347 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~  347 (424)
                      +.+..+||||-|++++.+|+++|+||.+.............+++.
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~   46 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR   46 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE
Confidence            678889999999999999999999999877644432233444443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.40  E-value=0.019  Score=44.80  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCC
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASG  351 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g  351 (424)
                      .|-+...|+||-|+++...|+++|+|+++.+-..... ...-.||| |-+|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            3455668999999999999999999999977654443 35668888 5556

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.39  E-value=0.016  Score=52.93  Aligned_cols=65  Identities=9%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      ..+.|.+.|+||+|+++++.|+.+|+||.+..+..  ..+...  +.+.-+.+     +...+.|++.|++.+.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~~-----~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPGD-----DRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEECC-----HHHHHHHHHHHHHHhH
Confidence            37899999999999999999999999999999965  334442  33332221     2236788888877653

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.33  E-value=0.014  Score=44.52  Aligned_cols=57  Identities=23%  Similarity=0.402  Sum_probs=39.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHH
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLK  363 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr  363 (424)
                      +-+...|+||.+++|+..|+++|++|.+......  ++.+.-.|.+   ++ +...+.++.|+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~   60 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELR   60 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHH
Confidence            3468899999999999999999999998776543  3444444444   33 44334555554

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.20  E-value=0.0046  Score=46.80  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=34.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      +-+.+.|+||+|.+|+.+|.++|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999887665544444444443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.19  E-value=0.031  Score=50.29  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=46.6

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC--ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK--TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~--~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      .|.+...|+||.|++|+++|+..|+||.+--+...+  +...-+|.|..        ++...++|..+|.+.+
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence            688999999999999999999999999988777643  44444444432        2356677777775543

acetohydroxyacid synthase is a synonym.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.17  E-value=0.042  Score=41.65  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=36.5

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-c-eEEEEEEEe
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-T-RAACIFYIE  128 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~-r~~dvf~V~  128 (424)
                      ..+.+..+|+||-|++|+..|+++|+||.+....... + ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            3578899999999999999999999999988766642 2 333455554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.17  E-value=0.013  Score=56.46  Aligned_cols=65  Identities=15%  Similarity=0.316  Sum_probs=50.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC---CCCCCChHHHHHHHHHHHh
Q 014457          299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA---SGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~---~g~~v~~~~~~~lr~~l~~  368 (424)
                      ..++|.++|+|++|+++.|+..|+++|.||..+.=-  ++.....|+.+-.   .+.|.   ..++|++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~---~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPL---DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcc---cHHHHHHHHHH
Confidence            357899999999999999999999999999997654  6677888988664   34443   35666666655

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.16  E-value=0.033  Score=41.85  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN  336 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~  336 (424)
                      .+.+.+.|+||.|++|++.|.+++++|......+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47889999999999999999999999998877655

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.13  E-value=0.038  Score=49.91  Aligned_cols=64  Identities=13%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..|.+...|+||.|++|+++|+..|+||.+--+...  .+...-+|.|..        |+..+++|..+|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            468999999999999999999999999988777653  344444454432        2456677877776543

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.12  E-value=0.026  Score=42.44  Aligned_cols=46  Identities=22%  Similarity=0.465  Sum_probs=36.7

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEe
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIE  128 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~  128 (424)
                      .|.+.++|+||.|++|+..|+++++||.+....+. ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887765 34444344443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.08  E-value=0.045  Score=41.67  Aligned_cols=35  Identities=20%  Similarity=0.454  Sum_probs=31.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                      ++.+.+..+|+||.|.+++++|.++|++|.+....
T Consensus         1 g~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           1 SSQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            45788999999999999999999999999987543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.07  E-value=0.06  Score=42.34  Aligned_cols=48  Identities=19%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED  129 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d  129 (424)
                      +.+.+..+|+||-|++|..+|+++|+||.+-..... ++...-+|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            567788899999999999999999999998876663 455667888865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK08577 hypothetical protein; Provisional

Probab=96.04  E-value=0.1  Score=45.58  Aligned_cols=67  Identities=15%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      .+..+.+.|.+.|+||+|++++.+|++++++|.+....+.  ++.+.-.|.+.-.+.     +..++.+.+.|.
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~~~L~  121 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELEEELK  121 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHHHHHH
Confidence            3457899999999999999999999999999999888763  344544444432222     123455555554

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.01  E-value=0.033  Score=42.38  Aligned_cols=46  Identities=22%  Similarity=0.423  Sum_probs=37.7

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEec
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIED  129 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d  129 (424)
                      +.+...|+||.+++|+.+|+++|+||.+.....  .++...-+|.+.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            456899999999999999999999998887755  4567776776644

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.98  E-value=0.026  Score=42.22  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=35.4

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEe
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIE  128 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~  128 (424)
                      |.+.+.|+||.|++|+.+|+++|++|.+......  ++.+.-.|.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~   48 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD   48 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence            6789999999999999999999999998887663  34444444443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=95.97  E-value=0.049  Score=47.65  Aligned_cols=52  Identities=23%  Similarity=0.385  Sum_probs=41.3

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEE
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYI  127 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V  127 (424)
                      .+....+.|.+.+.|+||+|++|+.+|+++++||.+....+.  ++.+...|.+
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v  104 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV  104 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence            455567899999999999999999999999999998887763  3434444433

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.87  E-value=0.066  Score=43.59  Aligned_cols=51  Identities=20%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCC
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGH  352 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~  352 (424)
                      +.|-+...|+||-|+++...|+++|||+++.+-.... ..-.-.||| |.+|.
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~   66 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK   66 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            5677777999999999999999999999997766543 335568888 55565

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.85  E-value=0.037  Score=54.42  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHH
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRT  358 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~  358 (424)
                      .+.|-+..+|+||.|+++..+|+++|||+++.+-.-.+ ..-.-.||| |..|..-++..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~v  252 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRNV  252 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHHH
Confidence            35677777899999999999999999999998877554 446779999 66686544333

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.83  E-value=0.023  Score=42.25  Aligned_cols=35  Identities=34%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK  118 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~  118 (424)
                      +.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            67888999999999999999999999988876643

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.81  E-value=0.07  Score=47.44  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=44.1

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED  129 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d  129 (424)
                      ...+....|.+...|+||+|++|+.+|+++|+||..-.... .++.+.-.|-|..
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            34566788999999999999999999999999999887766 4566666666644

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.81  E-value=0.065  Score=36.88  Aligned_cols=37  Identities=30%  Similarity=0.525  Sum_probs=32.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK  339 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~  339 (424)
                      |.+.+.|++|++++|+.+|.++|++|...........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~   37 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDG   37 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCC
Confidence            4678899999999999999999999999988765433

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.78  E-value=0.057  Score=41.48  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN  336 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~  336 (424)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998765543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.77  E-value=0.018  Score=43.53  Aligned_cols=45  Identities=18%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEe
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIE  128 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~  128 (424)
                      |.+.+.|+||+|++|+.+|++.|+||......+.++.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            567899999999999999999999998877666555555555543

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.75  E-value=0.074  Score=38.62  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=35.5

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEe
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIE  128 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~  128 (424)
                      |.+.+.|+||.+++|+..|.+++++|....+...+ +...-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            46789999999999999999999999999887755 3333344443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.71  E-value=0.015  Score=45.22  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=45.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCc--eeeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEK--ATGSFYVMDASGHDVNQ-RTVELLKQEIG  367 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~--a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~  367 (424)
                      -+|+++.-||-.+||||-+|..+|+.|.+|+|.-+  +++  .+-.|.+.+. +.++.. ....++.+.+.
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~   71 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVT   71 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHH
Confidence            37999999999999999999999999999999743  344  4455666554 444442 23334444333

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.60  E-value=0.1  Score=46.46  Aligned_cols=69  Identities=14%  Similarity=0.030  Sum_probs=49.9

Q ss_pred             cCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          217 CKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       217 ~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      ........+.+...|+||+|++|..+|+++|+||....... .+|.+.-.|.|...+.     +..++.|.+.|+
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~  133 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR  133 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence            34456789999999999999999999999999999887655 3466655566633221     125566666654

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.53  E-value=0.11  Score=37.62  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=41.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc-eeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK-ATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      |.+.+.|+||++.+|+..|.+++++|....+...++. +.-.|.+.-.     +...++.+.++|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4678999999999999999999999999988766522 2222323222     22355666655543

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK07431 aspartate kinase; Provisional

Probab=95.53  E-value=3  Score=45.31  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--
Q 014457          221 GYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--  295 (424)
Q Consensus       221 ~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--  295 (424)
                      +...|.|.+.   +.||++.++..+|.+.+++|....  + .+.. -.|.|..         ...++..+.|.+.+.-  
T Consensus       347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~---------~d~~~av~~Lh~~f~~~~  413 (587)
T PRK07431        347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDA---------EDGDKALRAVCEAFELED  413 (587)
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcH---------HHHHHHHHHHHHHhccCC
Confidence            4667777774   799999999999999999997655  2 1221 2244422         3445566666666521  


Q ss_pred             ---c-------CC-----------CceEEEEE-eCCCCchHHHHHHHHHHCCceEEEE
Q 014457          296 ---R-------VS-----------HGLRLEIC-TQNRMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       296 ---r-------~~-----------~~~~lev~-~~DrpGLL~~Itr~l~e~gl~I~~A  331 (424)
                         .       .+           +-..+.|. ..+.+|++++|...|.++|++|...
T Consensus       414 ~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i  471 (587)
T PRK07431        414 SQIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMI  471 (587)
T ss_pred             cccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence               0       00           11234443 4688999999999999999999995

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.41  E-value=0.085  Score=40.49  Aligned_cols=33  Identities=12%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS  257 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T  257 (424)
                      +.|..+|+||-|++++..|+++|.||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            578899999999999999999999999887654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.40  E-value=0.11  Score=40.95  Aligned_cols=62  Identities=18%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ..+.+...|+||.|.++++.+...||||.+..+.-  .++...-++.+ . +      +...+.|.+.|.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~------~~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S------ERPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C------CchHHHHHHHHhcC
Confidence            47899999999999999999999999999999965  33455444555 2 2      23567777777654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.27  E-value=0.11  Score=35.57  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG  259 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~  259 (424)
                      |.+.++|+||++.+++++|.+.+++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987643

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.26  E-value=0.076  Score=41.56  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCC
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHD  353 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~  353 (424)
                      |-+..+|+||-|+++...|.++|+|+.+.+-.... ....-.||| |.+|..
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            44566899999999999999999999997766543 445678888 545654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.19  E-value=0.093  Score=54.29  Aligned_cols=64  Identities=23%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-----CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-----KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-----~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      .+.|+|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.|.-       .|.++++.+...|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999988764     455444444432       234566766666644

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=95.12  E-value=0.084  Score=51.71  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhccC
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKS  376 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~~~  376 (424)
                      .|.|-+..+|+||-|+++-.+|+.+|||+++.+-.-.+ ....-.||| |-.|..=++...++| ++|...-..+|--
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~~v~~AL-~el~~~t~~~kil  269 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDPLVKEAL-EELKEITEFVKIL  269 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcHhHHHHH-HHHHhheeEEEEE
Confidence            57788888899999999999999999999998877444 457778888 666776543333333 4555533345543

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.10  E-value=0.065  Score=40.57  Aligned_cols=57  Identities=21%  Similarity=0.463  Sum_probs=39.9

Q ss_pred             CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          309 NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       309 DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      |+||.|.+|+.+|+..|+||.+..+....+...-.+.++-. |.   +..++.|.++|.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhcc
Confidence            78999999999999999999999998755444444444322 21   23567788887763

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.96  E-value=0.75  Score=47.42  Aligned_cols=127  Identities=15%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             CeEEEEEE---ecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457          221 GYSVVNIK---CIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R  296 (424)
Q Consensus       221 ~~tvV~V~---~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r  296 (424)
                      +...|+|.   ..++||++.++..+|.+.+++|....... .+ ..-.|+|..         +..+++.+.|.+.+.. .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~---------~d~~~a~~~L~~~~~~~~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDE---------TDADEAVRALKDQSGAAG  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence            56788888   57889999999999999999997553321 11 112355522         2234444455544311 1


Q ss_pred             -----C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457          297 -----V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       297 -----~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                           . .+...+.|.+.   ++||+++++.++|.++|++|..  ++   ....+..++.+.+.   .++.++.|.++|
T Consensus       328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~--i~---~s~~~is~vv~~~d---~~~av~~Lh~~f  398 (401)
T TIGR00656       328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM--IG---SSETNISFLVDEKD---AEKAVRKLHEVF  398 (401)
T ss_pred             CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE--EE---cCCCEEEEEEeHHH---HHHHHHHHHHHH
Confidence                 1 12356667665   7899999999999999999986  43   23445433434310   013556666655

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06635 aspartate kinase; Reviewed

Probab=94.66  E-value=0.69  Score=47.73  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             CeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH---Hh-
Q 014457          221 GYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA---IE-  294 (424)
Q Consensus       221 ~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a---l~-  294 (424)
                      +...|+|. ..++||.+.++..+|.+.|++|....... .+++..-.|.|..         +..++..+.|.+.   +. 
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            45566665 47899999999999999999999754432 2224444555522         2333444445442   11 


Q ss_pred             hcC---CCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEE
Q 014457          295 RRV---SHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       295 rr~---~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A  331 (424)
                      +..   .+-..+.|.+   .|+||.+++|.++|.++|++|...
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            001   1245678865   699999999999999999999884

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=94.64  E-value=0.13  Score=52.93  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=51.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN  374 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~  374 (424)
                      .+.|-+..+|+||.|+++...|+.+|||+++.+-.- .+..-.-.||| |..|..-++.. +..-++|......+|
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~~~-~~aL~~l~~~~~~~k  370 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSAEM-QKALKELGEITRSLK  370 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCHHH-HHHHHHHHHhcCcEE
Confidence            456667778999999999999999999999988774 44557889999 66676544333 333334444333344

>PRK07334 threonine dehydratase; Provisional

Probab=94.53  E-value=0.18  Score=52.10  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-----GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-----~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +.+.|.+.||||+|.+|+.+|++.++||.+....+.     ++.+.-.|.|.      +.+.+.++.|.+.|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998764     45554444442      2233567778777765

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.40  E-value=0.45  Score=38.69  Aligned_cols=72  Identities=14%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      ..+.+-+.+..+|+||-|+++-..|++.|+|+.+-...- .+..-.-.||| +.+|. . + ...+.+.+.|.+.|.
T Consensus        11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~-~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-S-A-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-C-C-HHHHHHHHHHHHHhC
Confidence            334566667779999999999999999999999876643 22222335777 55664 2 3 345555566655543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.31  E-value=0.15  Score=38.63  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             CcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           90 DRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        90 DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      |+||.|.+|+++|...|+||.+-.+..  .++...-.+.+..  +.      ...+.|..+|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence            789999999999999999999988887  4555555555544  22      244666666654

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.19  E-value=0.22  Score=42.46  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=41.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc-eeeEEEEEeCCCCC
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK-ATGSFYVMDASGHD  353 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~Fyv~d~~g~~  353 (424)
                      .+.|-+..+|+||-|++|...|+++|||+++.+-...... -.-.||| |..|.+
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            3567777799999999999999999999999776655444 4557888 555643

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.98  E-value=0.28  Score=54.47  Aligned_cols=74  Identities=19%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             EEEeecCC-CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHH
Q 014457          212 VLIDSCKE-KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQC  288 (424)
Q Consensus       212 V~v~~~~~-~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~  288 (424)
                      |.|..... .-...|.|.+.||+|+|.+|+.+|+++++||....+.+.  ++.+.-.|.|.-      .+-..+.+|...
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~  728 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK  728 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence            45643212 233588899999999999999999999999999999874  466666666532      223466777666


Q ss_pred             HHH
Q 014457          289 LIA  291 (424)
Q Consensus       289 L~~  291 (424)
                      |.+
T Consensus       729 L~~  731 (743)
T PRK10872        729 LNQ  731 (743)
T ss_pred             Hhc
Confidence            653

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=93.92  E-value=0.29  Score=37.09  Aligned_cols=47  Identities=21%  Similarity=0.526  Sum_probs=36.5

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEe
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIE  128 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~  128 (424)
                      +.+.+..+|+||.|++++.+|+++|+||.+....-  .++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57888999999999999999999999999775443  234445555553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.65  E-value=0.065  Score=42.92  Aligned_cols=61  Identities=11%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             EEEEEeCC-cchHHHHHHHHHHHcCceEeeEEEEc---------CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           83 ALEVTGVD-RPGLMSEISAVLYELGCHVPAAVAWT---------HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        83 ~iev~~~D-RpGLLs~I~~vL~~~~~~I~~A~i~T---------~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      .|+|.|+| ++|.+++|+++|+++|+||.+-+--+         ...+..-.|.|+.+    + .+.   +.++..|..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~-~~~---~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P-ADL---EALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C-CCH---HHHHHHHHH
Confidence            37899999 99999999999999999997544321         11345556667653    2 233   566677654

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=93.31  E-value=0.18  Score=39.33  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEE--EEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACI--FYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dv--f~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      +|+.|+-||-.|++++-+|..+++-|.+|+|.-|  +++-.-+  |.+.+  .+..+..+....+|.+++.+.|.
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~lm   75 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTLM   75 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999763  4443333  33444  34445544445677777666554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.31  E-value=0.71  Score=35.56  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=41.7

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +.+..+|+||-|+++...|+++|+||.+-...- .+....-.|||. .+|.. .+ ...+.+.+.|++
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~-~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DD-PDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CC-HHHHHHHHHHHH
Confidence            345568999999999999999999999985443 232333457774 34431 12 345555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK08210 aspartate kinase I; Reviewed

Probab=93.19  E-value=2.5  Score=43.72  Aligned_cols=96  Identities=15%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             CeEEEEEEecCC-hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cC
Q 014457          221 GYSVVNIKCIDR-PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RV  297 (424)
Q Consensus       221 ~~tvV~V~~~DR-pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~  297 (424)
                      +-..|+|...+. ||.+++|...|++.|+||.....+.  ..  -.|++..         +..+++.+.|++. ..  ..
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~  335 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPSV  335 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence            456777776555 9999999999999999999874442  11  2355521         2234444444432 11  11


Q ss_pred             -CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEE
Q 014457          298 -SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSM  330 (424)
Q Consensus       298 -~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~  330 (424)
                       .+...+.|.+.   ++||+++++.++|.+.|++|..
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence             23456667665   8999999999999999999975

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.15  E-value=0.46  Score=36.10  Aligned_cols=60  Identities=17%  Similarity=0.063  Sum_probs=38.2

Q ss_pred             EEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          226 NIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       226 ~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      .|.-+||||-|.+++..|+. |.||.+..-...+.....+++.....+     ++..+.+.+.|++
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence            57789999999999999999 999998655432211112222222222     2456666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.14  E-value=0.32  Score=53.84  Aligned_cols=62  Identities=10%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      .+.|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.-       .+.+.+..|-..|
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~L  688 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKI  688 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence            36799999999999999999999999999999988754 45444444432       2345666655555

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.10  E-value=0.47  Score=52.57  Aligned_cols=73  Identities=8%  Similarity=0.007  Sum_probs=51.5

Q ss_pred             EEEeecCC-CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHH
Q 014457          212 VLIDSCKE-KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCL  289 (424)
Q Consensus       212 V~v~~~~~-~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L  289 (424)
                      |.|+.... .-.+.|.|.+.||+|+|.+|+.+++.+++||.+..+.+.+ +.+.-.|.|.-      .+-..+++|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            45643322 2345788999999999999999999999999999987754 56555555522      2224667776666


Q ss_pred             H
Q 014457          290 I  290 (424)
Q Consensus       290 ~  290 (424)
                      .
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            5

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.09  E-value=0.39  Score=53.33  Aligned_cols=62  Identities=24%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      ...|.|.+.||+|||++|+.++++.++||.+..+.+.  ++.+...|.|.-       .|.+.+.+|-..|
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L  729 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKL  729 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence            3579999999999999999999999999999998874  566555555532       2345666666555

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.98  E-value=0.48  Score=44.54  Aligned_cols=60  Identities=8%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHH
Q 014457          298 SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVEL  361 (424)
Q Consensus       298 ~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~  361 (424)
                      +++..|-+.-.||||.+..|+.+|.++|+||....+.-.  |+.|.-+.-|    ..+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence            346678888999999999999999999999999999765  3445544444    33666666654

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.43  E-value=0.68  Score=51.28  Aligned_cols=63  Identities=14%  Similarity=0.085  Sum_probs=47.5

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLI  290 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~  290 (424)
                      .+.|.|.+.||+|+|++|+.+|+.+++||.+.++.+. ++.+.-.|.|.-      .+-..+.+|...|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHh
Confidence            4588899999999999999999999999999999875 455544454422      22246666666664

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.41  E-value=0.68  Score=35.03  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CCeEEEEEEec----CChhHHHHHHHHHHhCCceEEEEE
Q 014457          220 KGYSVVNIKCI----DRPKLLFDTLCALTDLQYVVFHAA  254 (424)
Q Consensus       220 ~~~tvV~V~~~----DRpgLL~~i~~~L~~~gl~I~~A~  254 (424)
                      .+...|+|.++    |.||+++++...|++.|++|+...
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            45778999888    799999999999999999998776

>PRK06291 aspartate kinase; Provisional

Probab=92.35  E-value=3.2  Score=43.85  Aligned_cols=130  Identities=17%  Similarity=0.258  Sum_probs=81.6

Q ss_pred             CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457          220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-  295 (424)
Q Consensus       220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-  295 (424)
                      ++...|+|.+.   +.||+++++..+|++.|++|......+..  .--.|.|..         +..++..+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            35678888764   78999999999999999999875433322  112355522         1233334445444331 


Q ss_pred             ---c---CCCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457          296 ---R---VSHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       296 ---r---~~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                         .   ..+...|.|.+.   +++|+++++..+|.+.|++|...-   +|....+..++.+...   .++.++.|.++|
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV~~~d---~~~av~~Lh~~f  461 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVVDEED---GERAVKVLHDEF  461 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEEeHHH---HHHHHHHHHHHh
Confidence               1   123467888776   799999999999999999998632   3445555544444321   123455555554

>PRK14630 hypothetical protein; Provisional

Probab=92.34  E-value=1.5  Score=38.85  Aligned_cols=92  Identities=11%  Similarity=0.040  Sum_probs=64.9

Q ss_pred             CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 014457          231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNR  310 (424)
Q Consensus       231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~Dr  310 (424)
                      |.-.+-..+..++..+||.+.+......++..+-..||...+|-.+   +.++.+-+.+...++.-.+..|.|||+++.=
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl   82 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPGI   82 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence            4556667788899999999999998876654444566755555333   6799999999888876556789999998733


Q ss_pred             CchHHHHHHHHHHCC
Q 014457          311 MGLLSDVTRAFRENG  325 (424)
Q Consensus       311 pGLL~~Itr~l~e~g  325 (424)
                      ---|...-.+-+-.|
T Consensus        83 dRpL~~~~df~r~~G   97 (143)
T PRK14630         83 NRKIKSDREFKIFEG   97 (143)
T ss_pred             CCcCCCHHHHHHhCC
Confidence            333555455555544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.27  E-value=0.59  Score=42.16  Aligned_cols=46  Identities=20%  Similarity=0.428  Sum_probs=37.4

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEe
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIE  128 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~  128 (424)
                      .+.+.+.++||.|.+++++++++|.||..|+.+.  +|+.+.--|.+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            5788899999999999999999999999999988  334444444443

>PRK06635 aspartate kinase; Reviewed

Probab=92.12  E-value=8.7  Score=39.60  Aligned_cols=33  Identities=12%  Similarity=0.066  Sum_probs=28.3

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEE
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHA  253 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A  253 (424)
                      +...+.|.+   ++.||.++++..+|++.|+||...
T Consensus       339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence            456777765   689999999999999999999874

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=92.04  E-value=7.3  Score=41.03  Aligned_cols=128  Identities=12%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457          220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-  295 (424)
Q Consensus       220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-  295 (424)
                      ++.+.|+|...   ..+|.++++...|.+.|++|..-........  -.|++...         ...+..+.|.+.+.. 
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~  373 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL  373 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence            46678888754   3459999999999999999987544321112  34666321         222333333333221 


Q ss_pred             --c--CCC-ceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEEEeecCCceee-EEEEEeCCCCCCChHHHHHHHHHH
Q 014457          296 --R--VSH-GLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATG-SFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       296 --r--~~~-~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d-~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                        +  ..+ --.+.+.+   ...||+.+.+..+|++.++||....     ..... +|.|...+    ..+.++.|.++|
T Consensus       374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is-----sSe~~Is~vV~~~~----~~~av~~LH~~~  444 (447)
T COG0527         374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS-----SSEISISFVVDEKD----AEKAVRALHEAF  444 (447)
T ss_pred             cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE-----cCCceEEEEEccHH----HHHHHHHHHHHH
Confidence              1  111 23455554   4779999999999999999999944     33334 45452221    123566666655


Q ss_pred             H
Q 014457          367 G  367 (424)
Q Consensus       367 ~  367 (424)
                      .
T Consensus       445 ~  445 (447)
T COG0527         445 F  445 (447)
T ss_pred             h
Confidence            3

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.00  E-value=0.29  Score=50.88  Aligned_cols=60  Identities=28%  Similarity=0.456  Sum_probs=48.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHH
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLK  363 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr  363 (424)
                      ..+|-+.-.|+||.++.|+.+|.++|+||..-++...|+.|.-+|-+   ++ ++.++.+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence            47888899999999999999999999999999998888777666644   33 44555666665

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.99  E-value=0.54  Score=51.68  Aligned_cols=65  Identities=22%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      .-...|.|.+.||+|||++|+.+|+..++||.+...-+.+++.+.+.+--.      +.+...+.+|-.+|
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l  689 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARL  689 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHH
Confidence            445789999999999999999999999999999988886566555443221      33445666665555

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.76  E-value=0.61  Score=51.61  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL  149 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L  149 (424)
                      .+.|.|.+.||+|+|++|+.+++..++||.+..+.+. ++.+.-.|.|.=       .+.+.+..|-..|
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L  672 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKI  672 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence            4679999999999999999999999999999999885 455444444432       2345666655555

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PLN02317 arogenate dehydratase

Probab=91.75  E-value=0.71  Score=47.36  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=47.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK---------------ATGSFYVMDASGHDVNQRTVELLKQ  364 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~---------------a~d~Fyv~d~~g~~v~~~~~~~lr~  364 (424)
                      .|.|-+.-+|+||.|+++..+|+.+|||+++.+-.-...+               -.-.||| |-+|..-++.. +..-+
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~~~-~~aL~  360 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADPRA-QNALA  360 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCHHH-HHHHH
Confidence            3667777789999999999999999999999877654433               3458999 55676544333 33334


Q ss_pred             HHHh
Q 014457          365 EIGG  368 (424)
Q Consensus       365 ~l~~  368 (424)
                      +|.+
T Consensus       361 ~L~~  364 (382)
T PLN02317        361 HLQE  364 (382)
T ss_pred             HHHH
Confidence            4444

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.70  E-value=0.7  Score=34.98  Aligned_cols=46  Identities=20%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             CCcEEEEEEeC----CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457           79 TENTALEVTGV----DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED  129 (424)
Q Consensus        79 ~~~t~iev~~~----DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d  129 (424)
                      .++..|.|.++    |.||++++++..|++.|+||....  |.   ..+.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence            45678888888    899999999999999999998776  33   356677765

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.57  E-value=1.1  Score=34.78  Aligned_cols=48  Identities=10%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCC
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDG  273 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g  273 (424)
                      +.+..+|+||-|+++-..|+..|+|+.+-...- .+....-.||| +.+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            444558999999999999999999999866543 22333345777 5455

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=91.07  E-value=0.65  Score=35.26  Aligned_cols=60  Identities=10%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          304 EICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       304 ev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .|.-+||||=|.++++++.+ |.||....-.-.+.....++..-...    +.+.++.+.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            56789999999999999999 99999876655443344455443332    23466666666554

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=90.87  E-value=6.3  Score=41.52  Aligned_cols=104  Identities=14%  Similarity=0.231  Sum_probs=66.8

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R  296 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r  296 (424)
                      +.+.|++.+   .++||+++++...|++.|++|....    .+..--.|+|...+   +.. ..+..+.+.|+..+.- .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence            456777774   6789999999999999999999852    22222346664321   100 0113333333322210 0


Q ss_pred             --C-CCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEE
Q 014457          297 --V-SHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAE  332 (424)
Q Consensus       297 --~-~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~  332 (424)
                        . .+-..|.+.+   .++||+++++..+|.++|++|....
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIs  420 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMIN  420 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence              1 1245677754   3889999999999999999999854

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=90.71  E-value=1.6  Score=34.03  Aligned_cols=49  Identities=18%  Similarity=0.118  Sum_probs=35.8

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCC
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGC  274 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~  274 (424)
                      +.+..+|+||-|+++-..|+..|+|+.+-...- .+....-.||| +.+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence            344558999999999999999999999877654 23333345777 44554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=90.61  E-value=1.2  Score=46.53  Aligned_cols=65  Identities=17%  Similarity=0.279  Sum_probs=47.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .+.|.+...|+||.|++|+.+|.++|++|.+..-....+.....+++++..    +...++++.++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            478888999999999999999999999999876544333456777787642    23445555555554

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=90.57  E-value=6.6  Score=44.56  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH---
Q 014457          220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI---  293 (424)
Q Consensus       220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al---  293 (424)
                      ++.+.|+|.+.   ++||++.++..+|.+.|++|......+ .+. --.|.|..         ...++..+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~-sIsf~V~~---------~d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEY-SISFCVPQ---------SDAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCc-eEEEEEeH---------HHHHHHHHHHHHHHHHH
Confidence            46778888764   789999999999999999997664433 121 12355533         12333334444433   


Q ss_pred             -hh-cC------CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEE
Q 014457          294 -ER-RV------SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       294 -~r-r~------~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A  331 (424)
                       .. ..      .+...|.|.+.   ++||+++++..+|.+.|++|...
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~I  430 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAI  430 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence             11 11      23456777776   78999999999999999999874

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.45  E-value=1.1  Score=42.25  Aligned_cols=54  Identities=13%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEec
Q 014457           76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIED  129 (424)
Q Consensus        76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d  129 (424)
                      +...+...+-+.-.||||.+..|+.+|.++++||...++..  .++.+.-++-|..
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            34455567777889999999999999999999999999987  4677666666543

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK14646 hypothetical protein; Provisional

Probab=90.42  E-value=3.4  Score=37.11  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCC
Q 014457          233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQNR  310 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~Dr  310 (424)
                      ..+...+..++..+||.+.+..+...++..+-..||..++|..++- +.++.+-+.|.+.|..  -.+..|.|||+++.=
T Consensus         7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl   85 (155)
T PRK14646          7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV   85 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence            3566778889999999999999998776444466775554544433 5899999999998864  356789999998844


Q ss_pred             CchHHHHHHHHHHCCceE
Q 014457          311 MGLLSDVTRAFRENGLSV  328 (424)
Q Consensus       311 pGLL~~Itr~l~e~gl~I  328 (424)
                      ---|..--.+-+-.|=.|
T Consensus        86 dRpL~~~~df~r~~G~~v  103 (155)
T PRK14646         86 SDELTSERDFKTFKGFPV  103 (155)
T ss_pred             CCcCCCHHHHHHhCCCEE
Confidence            444666666666666544

>PRK08818 prephenate dehydrogenase; Provisional

Probab=90.32  E-value=0.62  Score=47.76  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=38.8

Q ss_pred             ceEEEEEeC-CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457          300 GLRLEICTQ-NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA  349 (424)
Q Consensus       300 ~~~lev~~~-DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~  349 (424)
                      .+.|-+.-+ |+||.|++|+.+|.++||||++.++ .........|||.-.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~  344 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE  344 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence            456777776 9999999999999999999999998 444444444999554

>PLN02551 aspartokinase

Probab=90.26  E-value=4.8  Score=43.20  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH---HH
Q 014457          220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA---AI  293 (424)
Q Consensus       220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---al  293 (424)
                      ++.+.|+|.+.   +.||.++++...|.+.|++|....  +. + .--.|.|...+-.      ..+.+++.|.+   .+
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~~~~~------~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDPSKLW------SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence            45678888765   689999999999999999999873  22 1 1123666432211      12223323322   22


Q ss_pred             hh--cC---CCceEEEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457          294 ER--RV---SHGLRLEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       294 ~r--r~---~~~~~lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                      ++  ++   .+..+|.|.+.  .++|+++++-.+|.++|++|....   +|....+.-+|.+....   .+.++.|.++|
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV~~~d~---~~Av~aLH~~F  507 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIVNDDEA---EQCVRALHSAF  507 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEEeHHHH---HHHHHHHHHHH
Confidence            21  11   12456666654  689999999999999999998843   34455665455454200   12455555555


Q ss_pred             H
Q 014457          367 G  367 (424)
Q Consensus       367 ~  367 (424)
                      .
T Consensus       508 f  508 (521)
T PLN02551        508 F  508 (521)
T ss_pred             h
Confidence            3

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.19  E-value=2.2  Score=33.98  Aligned_cols=61  Identities=10%  Similarity=-0.013  Sum_probs=37.2

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      ++.|.-+|+||-|.+++.+|+  +.||.+..-... .+.+.-.+.+...+|     .+..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence            678899999999999999999  666664443321 133322233322221     2456666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.12  E-value=1.4  Score=48.54  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             EEEEeecC-CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHH
Q 014457          211 HVLIDSCK-EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQC  288 (424)
Q Consensus       211 ~V~v~~~~-~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~  288 (424)
                      .|.|+... ..-...|.|.+.||+|+|.+|+.+|+.++.||.+....+. ++.+.-.|-+.-      .+-..+.+|...
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~  688 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLAR  688 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHH
Confidence            34555553 3344588899999999999999999999999999998874 445544444422      222456666666


Q ss_pred             HH
Q 014457          289 LI  290 (424)
Q Consensus       289 L~  290 (424)
                      |.
T Consensus       689 l~  690 (701)
T COG0317         689 LK  690 (701)
T ss_pred             Hh
Confidence            54

>PRK14634 hypothetical protein; Provisional

Probab=89.81  E-value=3.5  Score=36.99  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=65.7

Q ss_pred             ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCC
Q 014457          232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQN  309 (424)
Q Consensus       232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D  309 (424)
                      .+.+-..+..++..+|+.+.+..+...++..+-..||..++|..++- +.++.+-+.|.+.|...  .+..|.|||+++.
T Consensus         6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   84 (155)
T PRK14634          6 LPDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG   84 (155)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence            34566677788999999999999988766444456776566743433 58999999999888643  4568999999873


Q ss_pred             CCchHHHHHHHHHHCCc
Q 014457          310 RMGLLSDVTRAFRENGL  326 (424)
Q Consensus       310 rpGLL~~Itr~l~e~gl  326 (424)
                      =---|..--.+-+-.|=
T Consensus        85 ldRpL~~~~~f~r~~G~  101 (155)
T PRK14634         85 IGDQLSSDRDFQTFRGF  101 (155)
T ss_pred             CCCcCCCHHHHHHhCCC
Confidence            33335555555555553

>PRK14636 hypothetical protein; Provisional

Probab=89.77  E-value=3.6  Score=37.72  Aligned_cols=95  Identities=14%  Similarity=0.044  Sum_probs=65.3

Q ss_pred             CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeC
Q 014457          231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQ  308 (424)
Q Consensus       231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~  308 (424)
                      |.+.+...+..++..+|+.+....+...++..+-..||..++|..++- +.++.+-+.|.+.|...  .+..|.|||+++
T Consensus         3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP   81 (176)
T PRK14636          3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSP   81 (176)
T ss_pred             hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence            345566778889999999999999988765444456675554333432 58999999999988643  467899999988


Q ss_pred             CCCchHHHHHHHHHHCCc
Q 014457          309 NRMGLLSDVTRAFRENGL  326 (424)
Q Consensus       309 DrpGLL~~Itr~l~e~gl  326 (424)
                      -=---|..--.+-+-.|=
T Consensus        82 GldRpL~~~~df~r~~G~   99 (176)
T PRK14636         82 GIDRPLTRPKDFADWAGH   99 (176)
T ss_pred             CCCCCCCCHHHHHHhCCC
Confidence            333335554455455443

>PRK14645 hypothetical protein; Provisional

Probab=89.42  E-value=4.9  Score=36.03  Aligned_cols=94  Identities=21%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCC
Q 014457          232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQN  309 (424)
Q Consensus       232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D  309 (424)
                      ...+-..+..++..+||.+.+..+...++..+-..||...+|..++- +.++.+-+.|.+.|...  .+..|.|||+++.
T Consensus         8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   86 (154)
T PRK14645          8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG   86 (154)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence            34566777889999999999999988765444455664444544443 58999999999988643  4568899999884


Q ss_pred             CCchHHHHHHHHHHCCc
Q 014457          310 RMGLLSDVTRAFRENGL  326 (424)
Q Consensus       310 rpGLL~~Itr~l~e~gl  326 (424)
                      ----|...-.+-+-.|-
T Consensus        87 ldRpL~~~~df~r~~G~  103 (154)
T PRK14645         87 PKRPLFTARHFERFAGL  103 (154)
T ss_pred             CCCCCCCHHHHHHhCCC
Confidence            44446666666666663

>PRK06382 threonine dehydratase; Provisional

Probab=89.19  E-value=2.1  Score=44.43  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE----c-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457           77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW----T-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE  150 (424)
Q Consensus        77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~----T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~  150 (424)
                      .....+.++|.-+|+||-|++|+.+|.++|+||.+-...    . ..+...-+|.|...       +++..+.|.+.|.
T Consensus       326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~  397 (406)
T PRK06382        326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALR  397 (406)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            355678999999999999999999999999999877664    2 34556666666541       2334445555553

>PRK06382 threonine dehydratase; Provisional

Probab=89.02  E-value=0.97  Score=46.84  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          283 QKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       283 ~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                      ..+.+.+...+. ...+.+++.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus       314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            345555554432 112356899999999999999999999999999987663

>PRK09181 aspartate kinase; Validated

Probab=88.84  E-value=8.5  Score=40.85  Aligned_cols=114  Identities=12%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             CeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457          221 GYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R  296 (424)
Q Consensus       221 ~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r  296 (424)
                      +.+.|+|.+.   +.||++.++...|.+.+++|..  +.+..  .--.|.|...       ....+++.+.|++.+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence            5677888654   7899999999999999999983  33321  2234666331       12345555555543321 1


Q ss_pred             --CCCceEEEEEeCC--CCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457          297 --VSHGLRLEICTQN--RMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD  348 (424)
Q Consensus       297 --~~~~~~lev~~~D--rpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d  348 (424)
                        ..+-.+|.|.+..  +||+.+++..+|.+.|++|....   .|....+.-.+.+
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~---qg~se~~Is~vV~  449 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH---QSMRQVNMQFVVD  449 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE---ecCCcceEEEEEe
Confidence              2334677777764  89999999999999999998733   3444555544434

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.72  E-value=1.7  Score=44.22  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=43.0

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457          299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA  349 (424)
Q Consensus       299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~  349 (424)
                      ..+.|.|.-+||||-|+.|+..|.+.|+||.+.+|.-..+....+..++-.
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~  339 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK  339 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence            358899999999999999999999999999999997666666666666443

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=88.69  E-value=0.31  Score=39.01  Aligned_cols=61  Identities=15%  Similarity=0.050  Sum_probs=42.2

Q ss_pred             EEEEEecC-ChhHHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          224 VVNIKCID-RPKLLFDTLCALTDLQYVVFHAAISSK---------GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       224 vV~V~~~D-RpgLL~~i~~~L~~~gl~I~~A~I~T~---------~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      +|+|.++| ++|++++++.+|+++|+||.+-+-.+.         .....-+|.|+.   .+.    ..+.++..|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~----~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPA----DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCC----CHHHHHHHHHH
Confidence            47899999 999999999999999999987554321         124455666653   222    23556666653

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=87.96  E-value=1.6  Score=39.50  Aligned_cols=44  Identities=25%  Similarity=0.390  Sum_probs=36.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      +.+.+.++||.|.++|-++++.|.||++|.--..++-.....|.
T Consensus         5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm   48 (218)
T COG1707           5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM   48 (218)
T ss_pred             eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence            67889999999999999999999999998876655544445555

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.82  E-value=0.98  Score=46.91  Aligned_cols=51  Identities=12%  Similarity=0.030  Sum_probs=43.6

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCC
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGC  274 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~  274 (424)
                      +...+.+.-+|+||.++.|+..|+++|+||...++.+.+++++-+|   +.|+.
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii---e~D~~  387 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI---DVDAD  387 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE---EeCCC
Confidence            5568888999999999999999999999999999988888885554   54553

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=87.66  E-value=2.1  Score=44.69  Aligned_cols=52  Identities=13%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCC
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHD  353 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~  353 (424)
                      +.|-+...|+||-|++|..+|.++|||+++.+-.... ....-.||| |.+|.+
T Consensus        17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~   69 (436)
T TIGR01268        17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS   69 (436)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc
Confidence            5677777999999999999999999999996665432 334568999 444654

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK14637 hypothetical protein; Provisional

Probab=87.26  E-value=6.4  Score=35.19  Aligned_cols=92  Identities=9%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcC-CCceEEEEEeCCC
Q 014457          232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRV-SHGLRLEICTQNR  310 (424)
Q Consensus       232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~-~~~~~lev~~~Dr  310 (424)
                      --|....+..++..+|+.+.+..+...++.-.-..+|...+|  ++- +.++.+-+.|.++|..-. +..+.|||+++.=
T Consensus         7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGl   83 (151)
T PRK14637          7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPGI   83 (151)
T ss_pred             cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCCC
Confidence            357778889999999999999999986654333455644444  322 589999999888886432 3468999998733


Q ss_pred             CchHHHHHHHHHHCCc
Q 014457          311 MGLLSDVTRAFRENGL  326 (424)
Q Consensus       311 pGLL~~Itr~l~e~gl  326 (424)
                      ---|...-.+-+-.|=
T Consensus        84 dRpL~~~~~f~r~~G~   99 (151)
T PRK14637         84 ERVIKNAAEFSIFVGE   99 (151)
T ss_pred             CCCCCCHHHHHHhCCC
Confidence            3335555555555453

>PRK14640 hypothetical protein; Provisional

Probab=87.14  E-value=6.8  Score=34.98  Aligned_cols=92  Identities=12%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM  311 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp  311 (424)
                      .+...+.-.+..+|+.+.+..+...++.-+-..||...+|-.+   +.++.+.+.|.++|...  .+..|.|||+++.=-
T Consensus         7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~l---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~   83 (152)
T PRK14640          7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSV---ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD   83 (152)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence            3555677889999999999999886653334566655555333   68999999999998643  456889999988444


Q ss_pred             chHHHHHHHHHHCCceE
Q 014457          312 GLLSDVTRAFRENGLSV  328 (424)
Q Consensus       312 GLL~~Itr~l~e~gl~I  328 (424)
                      --|...-.+-+-.|=.|
T Consensus        84 RpL~~~~~f~r~~G~~v  100 (152)
T PRK14640         84 RPLFKVAQFEKYVGQEA  100 (152)
T ss_pred             CcCCCHHHHHHhCCCeE
Confidence            44666666666666544

>PRK14647 hypothetical protein; Provisional

Probab=87.04  E-value=7.4  Score=35.04  Aligned_cols=91  Identities=15%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG  312 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG  312 (424)
                      +-..+..++..+||.+.+..+...++..+-..||....|-.+   +.++.+-+.|.+.|...  .+..|.|||+++.=--
T Consensus        10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvsl---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R   86 (159)
T PRK14647         10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNL---DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR   86 (159)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence            445567789999999999999987664334556644445333   68999999999988743  4568899999884333


Q ss_pred             hHHHHHHHHHHCCceE
Q 014457          313 LLSDVTRAFRENGLSV  328 (424)
Q Consensus       313 LL~~Itr~l~e~gl~I  328 (424)
                      -|...-..-+-.|-.|
T Consensus        87 pL~~~~~f~r~~G~~v  102 (159)
T PRK14647         87 PLKKEADYERYAGRLV  102 (159)
T ss_pred             cCCCHHHHHHhCCcEE
Confidence            3555555555555433

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=86.96  E-value=5.7  Score=30.93  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHH-HHHHHHHh
Q 014457          307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVE-LLKQEIGG  368 (424)
Q Consensus       307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~-~lr~~l~~  368 (424)
                      ..++||++++|..+|.++|++|...  ++ ++ ..=.|-|...  .+..++.+. +|.++|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI--~~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLI--TT-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEE--ee-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence            5788999999999999999999994  44 22 2234444332  222223343 66666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=86.71  E-value=4.7  Score=32.00  Aligned_cols=30  Identities=20%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEE
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVA  114 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i  114 (424)
                      ++.+.-+||||=|++++.+|+  +.||....-
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y   32 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY   32 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence            577888999999999999999  666664433

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=86.36  E-value=1.9  Score=43.80  Aligned_cols=37  Identities=11%  Similarity=0.136  Sum_probs=34.9

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS  257 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T  257 (424)
                      .++.|.|.-+|+||-+++++..|...|+||.+.+|.-
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            5789999999999999999999999999999999965

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=86.24  E-value=4.4  Score=31.57  Aligned_cols=57  Identities=19%  Similarity=0.397  Sum_probs=37.9

Q ss_pred             eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      ..+.||++++|..+|.++|++|...  ++ ++ ..=.|-|.... .-+.++.+++|.++|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI--~~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLV--ST-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEE--Ee-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence            4588999999999999999999994  44 33 22234443322 11444466777777766

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=86.16  E-value=3.2  Score=40.93  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             eEEEEEeCC-CCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          301 LRLEICTQN-RMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       301 ~~lev~~~D-rpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +.|-+...+ +||-|+++...|+++|||+++.+-.-.. ..-.-.||| |.+|.. +++.++.+-++|.+
T Consensus       197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHH
Confidence            445555544 6999999999999999999997766443 335678888 556765 33333443345444

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=85.98  E-value=2.3  Score=40.88  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC-CCCCCChHHHHHHHHHHHh
Q 014457          299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA-SGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~-~g~~v~~~~~~~lr~~l~~  368 (424)
                      +..+|.+--.|-||+|++|+-+|+..|.||.+.-+.-  .++.+.|..+-. -|   .+..+++.+++|.+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~--tevk~LsrmTIVl~G---td~VveQa~rQied  141 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL--TEVKALSRMTIVLQG---TDGVVEQARRQIED  141 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec--hhhhhhhhceEEEec---cHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999987753  344455522111 11   24567777788776

>PRK09224 threonine dehydratase; Reviewed

Probab=85.83  E-value=33  Score=36.68  Aligned_cols=108  Identities=11%  Similarity=0.038  Sum_probs=72.8

Q ss_pred             CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-H-----
Q 014457          220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-I-----  293 (424)
Q Consensus       220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l-----  293 (424)
                      .....+.|.-|||||-|.+++..|.  +.||.+-+-.-.+..-..+|+.....+.    +.+.+.|.+.|++. .     
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            3467899999999999999999999  5777765443322222234444332221    22477888888653 1     


Q ss_pred             --------------hhcCC---CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          294 --------------ERRVS---HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       294 --------------~rr~~---~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                                    ..+.+   +-..+.+.=+.|||-|-+....|. -+-+|+..+-.
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence                          01222   234788889999999999999777 67889888875

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=85.82  E-value=1.6  Score=45.66  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=40.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCce-e-eEEEEEeCCCCC
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKA-T-GSFYVMDASGHD  353 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a-~-d~Fyv~d~~g~~  353 (424)
                      .+.|-+...|+||-|+++-++|.++|||+++.+-....... . -.||| |..|..
T Consensus        31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~   85 (464)
T TIGR01270        31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFH   85 (464)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCH
Confidence            45666777999999999999999999999997766554443 3 47888 444544

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=85.74  E-value=2.3  Score=45.61  Aligned_cols=43  Identities=26%  Similarity=0.408  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA  349 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~  349 (424)
                      +|+|.+.||.|+..+|...|..+++++...+|...     +..|+.-+
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~-----~~~~~~~~   44 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI-----GRIYLNFA   44 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC-----CeEEEeCC
Confidence            68999999999999999999999999999999765     34667433

>PRK12483 threonine dehydratase; Reviewed

Probab=85.52  E-value=36  Score=36.61  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCHHHH-HHHHHHHHHH-H---
Q 014457          220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG-CFADQEYFIRQTDGCTLDTESQR-QKLTQCLIAA-I---  293 (424)
Q Consensus       220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~-~~a~d~F~V~~~~g~~~~~~~~~-~~l~~~L~~a-l---  293 (424)
                      .....+.|.-+||||-|.+++..|...  ||.+..-.... +.+ .+++.....+.     +.. +.|.+.|++. +   
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~  414 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPR-----HDPRAQLLASLRAQGFPVL  414 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeE
Confidence            356788999999999999999999988  77765554322 232 33333332221     243 6777777542 1   


Q ss_pred             ----------------hhcCC---CceEEEEEeCCCCchHHHHHHHHHH-CCceEEEEEEeecCCceeeEEEEEeCCCCC
Q 014457          294 ----------------ERRVS---HGLRLEICTQNRMGLLSDVTRAFRE-NGLSVSMAEIGTNGEKATGSFYVMDASGHD  353 (424)
Q Consensus       294 ----------------~rr~~---~~~~lev~~~DrpGLL~~Itr~l~e-~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~  353 (424)
                                      ..+.+   +--.+.+.-+.|||=|.++.+.|.. .+|+-.+  =.-.|.....+|.=-.     
T Consensus       415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~--YR~~~~~~a~v~vgi~-----  487 (521)
T PRK12483        415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFH--YRNHGAADGRVLAGLQ-----  487 (521)
T ss_pred             ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeee--ecCCCCCceEEEEEEe-----
Confidence                            01222   2357888899999999999999986 3555544  3334666666664222     


Q ss_pred             CChHHHHHHHHHHHh
Q 014457          354 VNQRTVELLKQEIGG  368 (424)
Q Consensus       354 v~~~~~~~lr~~l~~  368 (424)
                      +.++..+.+.+.|.+
T Consensus       488 ~~~~~~~~~~~~l~~  502 (521)
T PRK12483        488 VPEDERAALDAALAA  502 (521)
T ss_pred             eChhHHHHHHHHHHH
Confidence            222334555555543

>PRK00092 ribosome maturation protein RimP; Reviewed

Probab=85.10  E-value=10  Score=33.85  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM  311 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp  311 (424)
                      .+-..+..++..+|+.+.+..+...++...-..+|...+|-   +-+.++.+-+.|.++|...  .+..|.|||+++.--
T Consensus         8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv---~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~   84 (154)
T PRK00092          8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGI---DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD   84 (154)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCC---CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence            34555678899999999999999866543334555444443   2368999999999988643  446789999987333


Q ss_pred             chHHHHHHHHHHCCc
Q 014457          312 GLLSDVTRAFRENGL  326 (424)
Q Consensus       312 GLL~~Itr~l~e~gl  326 (424)
                      --|...-..-+-.|-
T Consensus        85 RpL~~~~~f~r~~G~   99 (154)
T PRK00092         85 RPLKKARDFRRFIGR   99 (154)
T ss_pred             CcCCCHHHHHHhCCC
Confidence            334444444444443

>PRK14638 hypothetical protein; Provisional

Probab=85.03  E-value=11  Score=33.71  Aligned_cols=99  Identities=13%  Similarity=0.104  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM  311 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp  311 (424)
                      .+-.-+..++..+|+.+.+......++..+-..||..++|. ++- +.++.+.+.|.+.|...  .+..|.|||+++.=-
T Consensus         9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~-v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld   86 (150)
T PRK14638          9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGY-VSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLD   86 (150)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-cCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence            34455667889999999999998866543345566444552 332 58999999999988643  456889999988333


Q ss_pred             chHHHHHHHHHHCCceEEEEEEeecC
Q 014457          312 GLLSDVTRAFRENGLSVSMAEIGTNG  337 (424)
Q Consensus       312 GLL~~Itr~l~e~gl~I~~A~i~T~g  337 (424)
                      --|...-..-+-.|=.|   +|.+.+
T Consensus        87 RpL~~~~~f~r~~G~~v---~V~~~~  109 (150)
T PRK14638         87 RPLRGPKDYVRFTGKLA---KIVTKD  109 (150)
T ss_pred             CCCCCHHHHHHhCCCEE---EEEECC
Confidence            33555555555555433   444443

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=84.88  E-value=1.8  Score=41.63  Aligned_cols=64  Identities=13%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEE--EEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQ--EYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d--~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      .-++++...|-||.+.+|+++|+..|+||.+.-+.-....++.  +..++-.|       .-.|..++.|+..
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl  142 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL  142 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence            4589999999999999999999999999999888543333332  33443322       2345555666554

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=84.78  E-value=51  Score=33.89  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEE
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFH  252 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~  252 (424)
                      +...|.|.+   +++||+++++..+|.+.|+||..
T Consensus       336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            567777777   48999999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK14639 hypothetical protein; Provisional

Probab=84.77  E-value=8.7  Score=33.85  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCchHHH
Q 014457          239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMGLLSD  316 (424)
Q Consensus       239 i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpGLL~~  316 (424)
                      +-.++..+|+.+.+..+...++..+-..||....|  ++- +.++.+.+.|.+.|...  .+..|.|||+++.----|..
T Consensus         3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~   79 (140)
T PRK14639          3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSK   79 (140)
T ss_pred             hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCC
Confidence            34568899999999999987765444566644444  332 68999999999988743  45678999998844444666


Q ss_pred             HHHHHHHCCceE
Q 014457          317 VTRAFRENGLSV  328 (424)
Q Consensus       317 Itr~l~e~gl~I  328 (424)
                      .-.+-+-.|-.|
T Consensus        80 ~~~f~r~~G~~v   91 (140)
T PRK14639         80 IEHFAKSIGELV   91 (140)
T ss_pred             HHHHHHhCCCEE
Confidence            566666666554

>PRK14633 hypothetical protein; Provisional

Probab=84.62  E-value=12  Score=33.47  Aligned_cols=89  Identities=18%  Similarity=0.239  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG  312 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG  312 (424)
                      +-..+..++..+||.+.+..+...++..+ ..||..++|-.+   +.++.+-+.|.++|...  .+..|.|||+++.=--
T Consensus         6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~Gv~l---ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR   81 (150)
T PRK14633          6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENGVSV---DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR   81 (150)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCCCCH---HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence            45567788999999999999987666544 455644555333   68999999999988743  4578999999984444


Q ss_pred             hHHHHHHHHHHCCce
Q 014457          313 LLSDVTRAFRENGLS  327 (424)
Q Consensus       313 LL~~Itr~l~e~gl~  327 (424)
                      -|...-..-+-.|=.
T Consensus        82 pL~~~~~f~r~~G~~   96 (150)
T PRK14633         82 QIFNIIQAQALVGFN   96 (150)
T ss_pred             CCCCHHHHHHhCCCe
Confidence            466666666665644

>PRK08198 threonine dehydratase; Provisional

Probab=84.21  E-value=7.2  Score=40.27  Aligned_cols=38  Identities=26%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE
Q 014457           78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW  115 (424)
Q Consensus        78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~  115 (424)
                      ......+.|.-+|+||-|+++..+++++|.||.+-...
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            45557899999999999999999999999999987654

>TIGR00657 asp_kinases aspartate kinase

Probab=84.16  E-value=26  Score=36.67  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CeEEEEEEecC-C-hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 014457          221 GYSVVNIKCID-R-PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--  296 (424)
Q Consensus       221 ~~tvV~V~~~D-R-pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--  296 (424)
                      +...|+|.+.+ . ||++.++..+|.+.|++|....-.+. +.. -.|.|...         ..++..+.|.......  
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~s-Is~~I~~~---------~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETS-ISFTVDKE---------DADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-Cce-EEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence            56677777543 3 79999999999999999987753222 111 23445321         1222222232211111  


Q ss_pred             -----CCCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEE
Q 014457          297 -----VSHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAE  332 (424)
Q Consensus       297 -----~~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~  332 (424)
                           ..+-..+.|.+   .++||++++|.+.|+++|++|....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 11245677754   4889999999999999999998854

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.91  E-value=2.5  Score=45.39  Aligned_cols=61  Identities=25%  Similarity=0.395  Sum_probs=44.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQ  364 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~  364 (424)
                      ++.|=+.-.|+||.+..|+.+|.++|+||....++-.  |+.+.-+|-+    ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            4556566799999999999999999999999887653  3444444443    33666677777764

>PRK11899 prephenate dehydratase; Provisional

Probab=83.21  E-value=7.6  Score=38.26  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAP  139 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~  139 (424)
                      .|.|-+..+|+||.|+++-.+|+..|+|+..-+--- .++...=+|||.=  +|. ..|+
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~-~~d~  250 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH-PEDR  250 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC-CCCH
Confidence            588888889999999999999999999998877665 4566777898864  565 3343

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.10  E-value=12  Score=39.01  Aligned_cols=50  Identities=20%  Similarity=0.318  Sum_probs=41.0

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED  129 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d  129 (424)
                      ....|.+...|+||.|++|+.+|.++++||.+-......+....++++++
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            34688999999999999999999999999997765554445667777877

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=83.00  E-value=3.8  Score=41.94  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                      ...+.|.-+||||.|+++++.+.++|.||....-.
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            35899999999999999999999999999887543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09084 aspartate kinase III; Validated

Probab=82.75  E-value=20  Score=37.75  Aligned_cols=131  Identities=14%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457          220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-  295 (424)
Q Consensus       220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-  295 (424)
                      ++...|+|.+.   +.||.++++...|++.|++|..... +.   .--+|+|...+-..    ...+.+.+.+.+.+.. 
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se---~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~~  375 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SE---VSVSLTLDTTGSTS----TGDTLLTQALLTELSQL  375 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cC---cEEEEEEechhhhh----hhhHHHHHHHHHHHhcC
Confidence            35678888764   6899999999999999999998752 11   22346664322110    0112222233222321 


Q ss_pred             -c--C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457          296 -R--V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI  366 (424)
Q Consensus       296 -r--~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l  366 (424)
                       +  . ++...|.|.+.   ++||+++++..+|.+.++.+     -++|....+.-++.+...   ..+.++.|.++|
T Consensus       376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~-----I~qgsSe~sIS~vV~~~d---~~~al~~LH~~f  445 (448)
T PRK09084        376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNIRM-----ICYGASSHNLCFLVPESD---AEQVVQALHQNL  445 (448)
T ss_pred             CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCeEE-----EEEcCCCCcEEEEEcHHH---HHHHHHHHHHHH
Confidence             1  1 23467888776   78999999999998754433     234555666544434310   123455555554

>PRK14631 hypothetical protein; Provisional

Probab=82.69  E-value=15  Score=33.64  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeec----------------CCCCCCCHHHHHHHHHHHHHHHhhc-
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT----------------DGCTLDTESQRQKLTQCLIAAIERR-  296 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~----------------~g~~~~~~~~~~~l~~~L~~al~rr-  296 (424)
                      .+...+.-++..+|+.+.+..+...++..+-..||..+                .+..++- +.++.+.+.|.++|... 
T Consensus         9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~d   87 (174)
T PRK14631          9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVHD   87 (174)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhcccc
Confidence            45566778899999999999999876544344556432                1122332 58999999999988633 


Q ss_pred             -CCCceEEEEEeCCCCchHHHHHHHHHHCCceE
Q 014457          297 -VSHGLRLEICTQNRMGLLSDVTRAFRENGLSV  328 (424)
Q Consensus       297 -~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I  328 (424)
                       .+..|.|||+++.----|.....+-+-.|=.|
T Consensus        88 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V  120 (174)
T PRK14631         88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV  120 (174)
T ss_pred             cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence             46689999999855445777777777666444

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=82.51  E-value=6.3  Score=33.54  Aligned_cols=51  Identities=10%  Similarity=0.028  Sum_probs=36.2

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCC
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGC  274 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~  274 (424)
                      +-+.+..+|+||-|+++-..|+.+|+|+.+-...-. +..-.-.||| +.+|.
T Consensus        42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~   93 (115)
T cd04930          42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVH   93 (115)
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeC
Confidence            455555599999999999999999999998765442 2222234777 54554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=82.49  E-value=4.2  Score=36.68  Aligned_cols=65  Identities=20%  Similarity=0.354  Sum_probs=46.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..+.+--.|.||.|+.++-.|++.|+||.+..+.-.. +...-+=.++.  |   ++..++++.+++.+.+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kLi   70 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhhc
Confidence            3577888999999999999999999999998886333 22222222322  2   3456788888887754

>PRK08818 prephenate dehydrogenase; Provisional

Probab=82.36  E-value=2.9  Score=42.88  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=38.9

Q ss_pred             CcEEEEEEeC-CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457           80 ENTALEVTGV-DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED  129 (424)
Q Consensus        80 ~~t~iev~~~-DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d  129 (424)
                      ..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .+.....-.|+|.=
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            4677777776 9999999999999999999999888 54433444488754

>PRK08210 aspartate kinase I; Reviewed

Probab=82.06  E-value=66  Score=33.16  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=28.7

Q ss_pred             CCcEEEEEEeCCc-chHHHHHHHHHHHcCceEeeEEE
Q 014457           79 TENTALEVTGVDR-PGLMSEISAVLYELGCHVPAAVA  114 (424)
Q Consensus        79 ~~~t~iev~~~DR-pGLLs~I~~vL~~~~~~I~~A~i  114 (424)
                      .+...|+|.+.+. ||.+++|+.+|.++|+||..-..
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~  305 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI  305 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence            3455677776555 99999999999999999987643

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=81.59  E-value=10  Score=38.82  Aligned_cols=65  Identities=17%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE---c--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457           79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW---T--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE  150 (424)
Q Consensus        79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~---T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~  150 (424)
                      .....+.|.-+||||-|++++.+++++|.||.+-.-.   .  ..+.+.-.+.|...       +++..+.|.+.|.
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~  372 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILR  372 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence            3445899999999999999999999999999877443   2  23455555555331       2345455555553

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK14643 hypothetical protein; Provisional

Probab=81.57  E-value=16  Score=33.05  Aligned_cols=93  Identities=13%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee---cCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeC
Q 014457          234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQ---TDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQ  308 (424)
Q Consensus       234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~---~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~  308 (424)
                      .+-.-+..++..+|+.+.+....+.++..+-..||.+   ++|. ++ =+.++.+.+.|.+.|..  -.+..|.|||+++
T Consensus        10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-vt-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSP   87 (164)
T PRK14643         10 QINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-LD-FDILIKANDLVSNKIDQFIKTSEKYLLEISSS   87 (164)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-cC-HHHHHHHHHHHHHHhCccCCCCCCeEEEecCC
Confidence            4455567788999999999999997764444567754   2332 33 25889999999998864  3567899999998


Q ss_pred             CCCchHHHHHHHHHHCCceE
Q 014457          309 NRMGLLSDVTRAFRENGLSV  328 (424)
Q Consensus       309 DrpGLL~~Itr~l~e~gl~I  328 (424)
                      .=---|...-.+-+-.|=.|
T Consensus        88 GleRpL~~~~df~r~~G~~V  107 (164)
T PRK14643         88 GIEKQIRSQEELVKALNQWV  107 (164)
T ss_pred             CCCCCCCCHHHHHHhcCCeE
Confidence            54444666555555556544

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=81.50  E-value=6.2  Score=38.80  Aligned_cols=56  Identities=21%  Similarity=0.361  Sum_probs=44.7

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCc
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITA  138 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d  138 (424)
                      ..|.|-+..+|+||-|+++-++|+.+|+|...-+-.- ..+-..-+|||.=  +|. +.+
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~-~~~  249 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH-IDD  249 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC-cCc
Confidence            4788888899999999999999999999998776655 5566677888854  455 444

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.49  E-value=2.8  Score=45.04  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=45.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQ  364 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~  364 (424)
                      ++.+=+.-.||||.+..|+.+|.++++||....+.-.  |+.+.-.+.+    ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            4555566689999999999999999999988877643  4445544444    23666677777764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=81.40  E-value=4.9  Score=36.29  Aligned_cols=65  Identities=11%  Similarity=0.202  Sum_probs=47.5

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      -++.+.-.|.||.|.++++.|+..||||.+-.+. |+. +...-++.+ .  |    ++...+++.+.|...+.
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~--g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S--G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c--C----CcchHHHHHHHHHhhcc
Confidence            3678888999999999999999999999999995 433 344444444 2  1    12356778888877653

>PRK06291 aspartate kinase; Provisional

Probab=81.33  E-value=77  Score=33.47  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=68.1

Q ss_pred             CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      .+.+.|.+.+.   +.||+++++..+|+++|++|..-...+..  .--.|.|.+          +..++..+.|.+.+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence            34577888775   68999999999999999999875433322  222344433          1112223333333321


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---CC
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---DR  232 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---DR  232 (424)
                      .. .                                                  ..|.+    ..+...|.|.+.   ++
T Consensus       387 ~~-~--------------------------------------------------~~i~~----~~~~a~IsvvG~gm~~~  411 (465)
T PRK06291        387 GL-V--------------------------------------------------RDVTF----DKDVCVVAVVGAGMAGT  411 (465)
T ss_pred             hc-C--------------------------------------------------cceEE----eCCEEEEEEEcCCccCC
Confidence            10 0                                                  00111    124567777774   79


Q ss_pred             hhHHHHHHHHHHhCCceEEEEE
Q 014457          233 PKLLFDTLCALTDLQYVVFHAA  254 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~  254 (424)
                      +|+..++..+|.+.|++|..-.
T Consensus       412 ~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        412 PGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             cChHHHHHHHHHHCCCCEEEEE
Confidence            9999999999999999998544

>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.30  E-value=17  Score=32.65  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeC-
Q 014457          233 PKLLFDTLCALTDLQYVVFHAAISSKGC-FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQ-  308 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~-~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~-  308 (424)
                      ..+..-+-.++.++||.+.+..+...++ ..+.+ |+..+.|-.+   +.++++-+.+.+.|...  .+..|.|||+++ 
T Consensus         8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI-~id~~g~v~l---ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG   83 (153)
T COG0779           8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRI-YIDKEGGVTL---DDCADVSRAISALLDVEDPIEGAYFLEVSSPG   83 (153)
T ss_pred             HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEE-EeCCCCCCCH---HHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence            4556666788999999999999999774 55554 4533333333   57899999999998744  346899999987 


Q ss_pred             -CCCchHHHHHHHHHHCCce
Q 014457          309 -NRMGLLSDVTRAFRENGLS  327 (424)
Q Consensus       309 -DrpGLL~~Itr~l~e~gl~  327 (424)
                       |||=  .....+-+-.|-.
T Consensus        84 ldRpL--~~~~~f~r~~G~~  101 (153)
T COG0779          84 LDRPL--KTAEHFARFIGEK  101 (153)
T ss_pred             CCCCc--CCHHHHHHhcCcE
Confidence             6763  3333444444433

>PRK14632 hypothetical protein; Provisional

Probab=80.99  E-value=17  Score=33.18  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG  312 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG  312 (424)
                      +-.-+.-++..+||.+.+..+.. ++..+-..||...+|-.+   +.++.+.+.|.++|...  .+..|.|||+++.=--
T Consensus        10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~l---dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR   85 (172)
T PRK14632         10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTI---DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER   85 (172)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence            44556678899999999999775 443334556644445333   68999999999988643  4568899999873333


Q ss_pred             hHHHHHHHHHHCCc
Q 014457          313 LLSDVTRAFRENGL  326 (424)
Q Consensus       313 LL~~Itr~l~e~gl  326 (424)
                      -|...-.+-+-.|=
T Consensus        86 pL~~~~~f~r~iG~   99 (172)
T PRK14632         86 PFFRAEQMSPYVGR   99 (172)
T ss_pred             cCCCHHHHHHhCCC
Confidence            35555555555443

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=80.71  E-value=18  Score=26.35  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=28.3

Q ss_pred             EEEEEEe---CCcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457           82 TALEVTG---VDRPGLMSEISAVLYELGCHVPAAVAWT  116 (424)
Q Consensus        82 t~iev~~---~DRpGLLs~I~~vL~~~~~~I~~A~i~T  116 (424)
                      ..|.+.|   .+.||++++|...|++.|++|..-...+
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~   39 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS   39 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            3567777   4789999999999999999997665434

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=80.70  E-value=18  Score=26.49  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             EEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457           82 TALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWT  116 (424)
Q Consensus        82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T  116 (424)
                      ..|.++|.   ++||.++++.++|++.|+++..-...+
T Consensus         2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            35677776   689999999999999999997765544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09034 aspartate kinase; Reviewed

Probab=80.66  E-value=80  Score=33.26  Aligned_cols=37  Identities=8%  Similarity=-0.005  Sum_probs=29.5

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISS  257 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T  257 (424)
                      +...|.+.+   .+.||++.++..+|.+.|+||......+
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            456777755   4789999999999999999998765433

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=80.21  E-value=27  Score=39.96  Aligned_cols=135  Identities=11%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             CCeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 014457          220 KGYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR  296 (424)
Q Consensus       220 ~~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr  296 (424)
                      ++.+.|+|.+   .+.||.++++...|++.+++|....  +. + .--+|.+...+.. . .+..++.+...|...-+-.
T Consensus       320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--ss-e-~sis~~i~~~~~~-~-~~~~~~~l~~~l~~~~~i~  393 (861)
T PRK08961        320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SS-E-TNVTVSLDPSENL-V-NTDVLAALSADLSQICRVK  393 (861)
T ss_pred             CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cC-C-CEEEEEEcccccc-c-hHHHHHHHHHHHhhcCcEE
Confidence            3567888864   4689999999999999999997763  22 2 1123555332211 0 1122333433433200001


Q ss_pred             C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          297 V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       297 ~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      . .+-.+|.|.+.   .+||+++++..+|.+.|+++.     .+|....+..+|.+....   .+.++.|.++|.+
T Consensus       394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i-----~~gsSe~~Is~vV~~~d~---~~av~~LH~~f~~  461 (861)
T PRK08961        394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLI-----SQASNDLNLTFVIDESDA---DGLLPRLHAELIE  461 (861)
T ss_pred             EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEE-----ECCCccccEEEEEeHHHH---HHHHHHHHHHHhc
Confidence            1 23467888776   789999999999999886553     355666676555554211   2356677666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	424
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 60/344 (17%), Positives = 104/344 (30%), Gaps = 113/344 (32%)

Query: 8   LELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQ--ALCASRRGGGASNEVQ 65
           +E V+  +Y      + M       +  + +T      YI+Q   L          N+ Q
Sbjct: 83  VEEVLRINY-----KFLMSPIKTEQRQPSMMTRM----YIEQRDRLY---------NDNQ 124

Query: 66  KCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYEL------------GC--HVPA 111
                     +VS            R     ++   L EL            G      A
Sbjct: 125 V-----FAKYNVS------------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 112 A-VAWTHKTRAAC---IFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGETRSVRL 167
             V  ++K +      IF++       P T  EML    ++L   +  +       S  +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI 223

Query: 168 TTPMPGRTHTER-RLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLI--DSCKEKGYSV 224
                 R H+ +  L +L+   + YE C                 +L+  +    K ++ 
Sbjct: 224 ----KLRIHSIQAELRRLL-KSKPYENC-----------------LLVLLNVQNAKAWNA 261

Query: 225 VNIKC----IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTES 280
            N+ C      R K + D L A T     + H    S                    T  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMT-L----------------TPD 301

Query: 281 QRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFREN 324
           + + L   L+  ++ R    L  E+ T N    LS +  + R+ 
Sbjct: 302 EVKSL---LLKYLDCRPQ-DLPREVLTTNPR-RLSIIAESIRDG 340

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 4/46 (8%), Positives = 17/46 (36%)

Query: 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM 347
            + I  +++ G+ + +T    +   ++    +       T +  + 
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	424
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.75
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.7
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.67
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.61
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.64
2f06_A	144	Conserved hypothetical protein; structural genomic	98.6
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.15
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.07
2f06_A	144	Conserved hypothetical protein; structural genomic	98.02
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.84
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.79
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.6
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.33
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.22
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.22
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.18
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.15
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.08
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.04
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.97
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.95
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.93
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.92
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.92
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.9
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.9
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	96.86
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.82
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.76
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.68
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.67
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.63
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.59
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.44
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.38
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.37
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.99
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.65
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.51
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.5
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.39
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.37
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.32
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.04
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.94
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	94.67
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.37
3luy_A	329	Probable chorismate mutase; structural genomics, A	94.31
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	94.06
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.84
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.77
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	91.3
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	90.36
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	89.39
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	88.93
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	88.05
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.86
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	85.79
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.71
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.35
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	84.48

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.75  E-value=1.3e-17  Score=153.82  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=112.7

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc---
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC-FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR---  296 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~-~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr---  296 (424)
                      ..++|+|+|+|||||++.|+++|+++|+||.++++++..+ +++ .|.|.... .  .....++.|++.|.....+.   
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNA-K--DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCe
Confidence            4579999999999999999999999999999999998555 554 77775432 1  22235677777776543210   


Q ss_pred             ----------CCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457          297 ----------VSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYVMDASGHDVNQRTVELLKQ  364 (424)
Q Consensus       297 ----------~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv~d~~g~~v~~~~~~~lr~  364 (424)
                                ....++|+|.++|||||+++||++|+++|+||..++..|.+  +++.+.||++...+.| .+.. +.|++
T Consensus        80 ~~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~  157 (195)
T 2nyi_A           80 SSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVT  157 (195)
T ss_dssp             CCC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHH
T ss_pred             EEEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHH
Confidence                      11358999999999999999999999999999999999998  7889999998877655 2335 77888


Q ss_pred             HHHh
Q 014457          365 EIGG  368 (424)
Q Consensus       365 ~l~~  368 (424)
                      +|..
T Consensus       158 ~l~~  161 (195)
T 2nyi_A          158 ALSR  161 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7775

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.70  E-value=5.4e-16  Score=142.27  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=109.3

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh------
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER------  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r------  295 (424)
                      ..+|+|.|+||||++++|+++|+++|+||.++++++..+...-.|.|..+       +...+.|++.|.+....      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            57999999999999999999999999999999999866655457777542       13678888888765531      


Q ss_pred             --cC---C-----CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC----ceeeEEEEEeCCCCCCChHHHHH
Q 014457          296 --RV---S-----HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE----KATGSFYVMDASGHDVNQRTVEL  361 (424)
Q Consensus       296 --r~---~-----~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~----~a~d~Fyv~d~~g~~v~~~~~~~  361 (424)
                        +.   +     ..++|+|.++||||+|++|+++|+++|+||..++..|.++    ++.+.||++...+.| ++..++.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              11   1     2579999999999999999999999999999999999985    689999998876544 2235677


Q ss_pred             HHHHHHh
Q 014457          362 LKQEIGG  368 (424)
Q Consensus       362 lr~~l~~  368 (424)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777765

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.67  E-value=5e-16  Score=143.12  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=112.1

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCC
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGE  159 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~  159 (424)
                      ...+|.|+|+|||||++.|+++|+++||||++|+++|..+++.-.|.|..+ . .  ..+.+++.|++.|..++.+..  
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~-~-~--~~~~~~~~l~~~L~~~~~~~~--   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN-A-K--DGKLIQSALESALPGFQISTR--   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-S-S--SSHHHHHHHHHHSTTCEEEEE--
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec-C-c--cchhHHHHHHHHHHHHHHhcC--
Confidence            357899999999999999999999999999999999977777778888763 2 1  223456666666543322110  


Q ss_pred             CccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHH
Q 014457          160 GETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDT  239 (424)
Q Consensus       160 ~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i  239 (424)
                           +.            .+++                      .   .+    . ......++|+|.|+|||||+++|
T Consensus        78 -----~~------------~~~~----------------------~---~~----~-~~~~~~~iltv~g~DrpGiva~V  110 (195)
T 2nyi_A           78 -----RA------------SSVA----------------------E---RH----V-SPDTREYELYVEGPDSEGIVEAV  110 (195)
T ss_dssp             -----EC------------CCC---------------------------------C-CTTEEEEEEEEEEECCTTHHHHH
T ss_pred             -----Ce------------EEEE----------------------e---CC----c-CCCCcEEEEEEEeCCCcCHHHHH
Confidence                 10            1111                      0   01    0 12235689999999999999999


Q ss_pred             HHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          240 LCALTDLQYVVFHAAISSKG--CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       240 ~~~L~~~gl~I~~A~I~T~~--~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      +.+|+++|+||.+++..|.+  ....+.|+++...+.+  +... +.|++.|....
T Consensus       111 t~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          111 TAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             HHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence            99999999999999999976  4456778887655433  1224 77777776543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.61  E-value=9.7e-15  Score=133.86  Aligned_cols=157  Identities=13%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCC
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG  160 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~  160 (424)
                      ..+|.|+|+||||++++|+++|+++||||.++++.+..+...-.|.|..+        +..++.|++.|..+.. .... 
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~-~~~~-   75 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQ-QHDL-   75 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHH-HHTC-
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHH-hcCC-
Confidence            46899999999999999999999999999999999977887778888662        1466888888877653 2111 


Q ss_pred             ccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHH
Q 014457          161 ETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL  240 (424)
Q Consensus       161 ~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~  240 (424)
                       .  .              +++       ..+.               ++     +..+...++|.|.|+||||++++|+
T Consensus        76 -~--~--------------~~~-------~~~~---------------~~-----~~~~~~~~~l~v~~~D~~Gil~~v~  111 (192)
T 1u8s_A           76 -I--T--------------MMK-------RTSP---------------HD-----HQTHAYTVEVYVESDDKLGLTEKFT  111 (192)
T ss_dssp             -E--E--------------EEE-------EECC---------------CC-----CCCCSEEEEEEEEESCCTTHHHHHH
T ss_pred             -E--E--------------EEE-------eCCC---------------CC-----CccCCceEEEEEEeCCCccHHHHHH
Confidence             0  1              111       0000               01     1223356799999999999999999


Q ss_pred             HHHHhCCceEEEEEEEeeCC----eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          241 CALTDLQYVVFHAAISSKGC----FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       241 ~~L~~~gl~I~~A~I~T~~~----~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      .+|+++|+||.+++..|.+.    ...+.|+++..-+.+-  ....+.|++.|.+..
T Consensus       112 ~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~  166 (192)
T 1u8s_A          112 QFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALC  166 (192)
T ss_dssp             HHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHH
Confidence            99999999999999999763    4567788876543221  124567777776543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.76  E-value=2.3e-07  Score=94.10  Aligned_cols=122  Identities=9%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh------
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE------  294 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~------  294 (424)
                      ...+|+|.|+|||||++.|+..|+++|+||.+..-.+.+|+..-...+.-+.+.     ...+.|++.|...-+      
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCeEE
Confidence            357999999999999999999999999999999998877754333333221110     023567777765321      


Q ss_pred             --h------cCC--CceEEEEEeCC-CCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457          295 --R------RVS--HGLRLEICTQN-RMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM  347 (424)
Q Consensus       295 --r------r~~--~~~~lev~~~D-rpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~  347 (424)
                        +      +.+  ..+.+++.+.| ++|++.+|+.+|+++|+||.....-+......=.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence              0      112  26799999999 99999999999999999999877766433333336663

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.64  E-value=5e-07  Score=91.63  Aligned_cols=139  Identities=12%  Similarity=0.024  Sum_probs=95.5

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCC
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGE  159 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~  159 (424)
                      ...+|+|+|+||||+.+.|+++|+++||||.+....+.++++.-...+.-+ ..     ....+.|++.|..+ ......
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-~~-----~~~~~~l~~~l~~~-~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-AD-----VADGPALRHDVEAA-IRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-HH-----HHTSHHHHHHHHHH-HHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-CC-----cCCHHHHHHHHHHH-HHHcCe
Confidence            457899999999999999999999999999999999888887776666542 11     00226677777543 322222


Q ss_pred             CccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecC-ChhHHHH
Q 014457          160 GETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCID-RPKLLFD  238 (424)
Q Consensus       160 ~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~D-RpgLL~~  238 (424)
                        .                .+++       +.+.           .    +.+     .......+.+.++| +|+++.+
T Consensus        84 --~----------------~~~~-------~~~~-----------~----~~~-----~~~~~~~~~llg~~~~~~~~~~  118 (415)
T 3p96_A           84 --D----------------VSIE-------RSDD-----------V----PII-----REPSTHTIFVLGRPITAAAFGA  118 (415)
T ss_dssp             --E----------------EEEE-------ECSS-----------S----CSS-----CCCCSEEEEEEESSCCHHHHHH
T ss_pred             --E----------------EEEE-------ECCc-----------c----ccc-----CCCCcEEEEEEeCCCCHHHHHH
Confidence              0                1221       0000           0    000     12346689999999 9999999


Q ss_pred             HHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 014457          239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQ  270 (424)
Q Consensus       239 i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~  270 (424)
                      ++..|+++|.||......+......-.|+|..
T Consensus       119 i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A          119 VAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             HHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             HHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence            99999999999998888774333334466643

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.60  E-value=8.7e-07  Score=76.79  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=74.9

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceE
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLR  302 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~  302 (424)
                      ..++|..+|+||.++++++.|++.|+||....+....+...-.|.+        .+   .++.++.|++. .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--------~d---~~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--------SD---PDKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--------SC---HHHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--------CC---HHHHHHHHHHc-CCeEeeeeE
Confidence            4788899999999999999999999999998776432222222332        12   23444445432 101111236


Q ss_pred             EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      +-+..+|+||.+++++++|+++|+||.+......+.++.=.|-+
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            77788999999999999999999999876554233444434433

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.15  E-value=7.8e-06  Score=64.82  Aligned_cols=66  Identities=14%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ...|++.++||||+|++|+++|+++|+||.+....+.++.+.-.+.+.-+  +.     ..++.|.+.|.++-
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998866777777766442  11     23467777776543

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.07  E-value=3.5e-05  Score=60.95  Aligned_cols=65  Identities=6%  Similarity=0.036  Sum_probs=50.6

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ...+.|.++||||++++|+.+|+++|+||.+....+..+...-.+.+.-++.      ..++.|.+.|.+.
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~------~~l~~l~~~L~~~   69 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK------QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC------CCHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC------CCHHHHHHHHHHH
Confidence            4689999999999999999999999999999999887676655565533321      1356677777654

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.02  E-value=0.00028  Score=60.80  Aligned_cols=105  Identities=16%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCC
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG  160 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~  160 (424)
                      ..|+|..+|+||.+++|+++|++.|+||..-.+.. .+.- .-.|.++         |+++   .++.|.+.       +
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~-~~~~~~~---------d~~~---a~~~L~~~-------G   66 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFG-ILRGIVS---------DPDK---AYKALKDN-------H   66 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCE-EEEEEES---------CHHH---HHHHHHHT-------T
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCC-EEEEEeC---------CHHH---HHHHHHHc-------C
Confidence            46888999999999999999999999999876653 3311 1112222         2322   22333210       0


Q ss_pred             ccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHH
Q 014457          161 ETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL  240 (424)
Q Consensus       161 ~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~  240 (424)
                      ..                  .                            .          .+.++-+..+|+||.+++++
T Consensus        67 ~~------------------v----------------------------~----------~~svv~v~~~d~pGvla~i~   90 (144)
T 2f06_A           67 FA------------------V----------------------------N----------ITDVVGISCPNVPGALAKVL   90 (144)
T ss_dssp             CC------------------E----------------------------E----------EEEEEEEEEESSTTHHHHHH
T ss_pred             Ce------------------E----------------------------e----------eeeEEEEEeCCCCcHHHHHH
Confidence            00                  0                            0          12467778899999999999


Q ss_pred             HHHHhCCceEEEEEEEeeCCeE
Q 014457          241 CALTDLQYVVFHAAISSKGCFA  262 (424)
Q Consensus       241 ~~L~~~gl~I~~A~I~T~~~~a  262 (424)
                      .+|++.|+||.....+..++.+
T Consensus        91 ~~L~~~~InI~~~~~~~~~~~~  112 (144)
T 2f06_A           91 GFLSAEGVFIEYMYSFANNNVA  112 (144)
T ss_dssp             HHHHHTTCCEEEEEEEEETTEE
T ss_pred             HHHHHCCCCEEEEEEEccCCcE
Confidence            9999999999876655233444

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.84  E-value=5.5e-05  Score=59.13  Aligned_cols=49  Identities=16%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED  129 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d  129 (424)
                      .+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~   53 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence            4678999999999999999999999999999999886665555555543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.79  E-value=9.3e-05  Score=57.78  Aligned_cols=64  Identities=9%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .+.|.|.+.||||+|++|+++|+++|+||....+.+.++.+...|.+.-.     +...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            36789999999999999999999999999999998876544445544322     23456666666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.60  E-value=0.0005  Score=60.92  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=73.4

Q ss_pred             CeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH---hh
Q 014457          221 GYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI---ER  295 (424)
Q Consensus       221 ~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al---~r  295 (424)
                      +...|+|. .+|+||.++++...|++.|+||..-.... .+|...-.|+|..         ...++..+.|++..   .-
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~---------~~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR---------GDYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG---------GGHHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec---------hHHHHHHHHHHHHHHHcCC
Confidence            56788888 49999999999999999999999876542 2344444577733         12233344454421   10


Q ss_pred             -c---CCCceEEEEEeCC---CCchHHHHHHHHHHCCceEEEEEEee
Q 014457          296 -R---VSHGLRLEICTQN---RMGLLSDVTRAFRENGLSVSMAEIGT  335 (424)
Q Consensus       296 -r---~~~~~~lev~~~D---rpGLL~~Itr~l~e~gl~I~~A~i~T  335 (424)
                       .   ......+.|.+.+   +||+++++.++|.++|++|..  ++|
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--ist  139 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--IST  139 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEc
Confidence             0   1124678898887   999999999999999999999  454

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.33  E-value=0.0076  Score=58.20  Aligned_cols=105  Identities=10%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER----  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r----  295 (424)
                      ..+++|.|+|||||++.|+..|+++|+||.+.+.++  ..|+......+.-+++ ..    ..+.|++.|...-++    
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            468999999999999999999999999999999875  3454333333322222 12    246677777643221    


Q ss_pred             ----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEE
Q 014457          296 ----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       296 ----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A  331 (424)
                          ...+..+|-|-.--+---|.++-...++..++++-+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~  120 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPT  120 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEE
Confidence                122344565555555567888888888777765433

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.22  E-value=0.0092  Score=57.52  Aligned_cols=101  Identities=14%  Similarity=0.023  Sum_probs=63.8

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER----  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r----  295 (424)
                      ..+++|.|+|||||++.|+..|+++|+||.+.+-++  ..++......+..+.+  .    ..+.|++.|.+.-++    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~--~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDD--F----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSS--C----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCC--C----CHHHHHHHHHHHHHHcCCE
Confidence            468999999999999999999999999999999886  3344322222322221  1    356777777654221    


Q ss_pred             ----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceE
Q 014457          296 ----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSV  328 (424)
Q Consensus       296 ----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I  328 (424)
                          ...+..+|-|-.--+---|.++....++..++.
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~  118 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM  118 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCC
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCc
Confidence                112233444444444446777777766655543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.22  E-value=0.007  Score=58.81  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER----  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r----  295 (424)
                      ..+++|.|+|||||++.|+..|+++|+||.+++-++.  .|+......+..+.+ ..    ..+.|++.|...-++    
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~   96 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMD   96 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCe
Confidence            4689999999999999999999999999999998874  454333333322221 11    346677776543211    


Q ss_pred             ----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceE
Q 014457          296 ----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSV  328 (424)
Q Consensus       296 ----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I  328 (424)
                          ...+..++-|-.--+---|.++....+...++.
T Consensus        97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~  133 (302)
T 3o1l_A           97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDC  133 (302)
T ss_dssp             EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCS
T ss_pred             eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCc
Confidence                112233444444444446777777776665543

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.18  E-value=0.0029  Score=56.59  Aligned_cols=131  Identities=14%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             CCeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457          220 KGYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISSK---GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER  295 (424)
Q Consensus       220 ~~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~---~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r  295 (424)
                      ++.+.|+|. .+|+||.++++...|++.|+||.....++.   ++...-.|.+..         +..++..+.|++....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence            356788884 699999999999999999999988766543   333323466633         2334444445442111


Q ss_pred             -c------CCCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHH
Q 014457          296 -R------VSHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQE  365 (424)
Q Consensus       296 -r------~~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~  365 (424)
                       .      .++...+.|.+.   ++||+++++.++|.+.|+||..  |+|..  ..=.|.| +..  - ..+.++.|.++
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--istSe--~~Is~vV-~~~--d-~~~Av~~Lh~~  155 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSE--IRISVLI-RED--D-LDAAARALHEQ  155 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEEET--TEEEEEE-EGG--G-HHHHHHHHHHH
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEcCC--CeEEEEE-eHH--H-HHHHHHHHHHH
Confidence             0      112456777776   8999999999999999999999  44432  2224555 321  0 01355666666


Q ss_pred             HH
Q 014457          366 IG  367 (424)
Q Consensus       366 l~  367 (424)
                      |.
T Consensus       156 F~  157 (178)
T 2dtj_A          156 FQ  157 (178)
T ss_dssp             HT
T ss_pred             Hc
Confidence            54

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.15  E-value=0.023  Score=50.07  Aligned_cols=112  Identities=12%  Similarity=0.115  Sum_probs=74.2

Q ss_pred             CCCcEEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           78 STENTALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        78 ~~~~t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      ..+.+.|+|.+ +|+||.+++|+.+|+++|+||..-.... .+|...-.|.|...       ++++   .++.|.+ +..
T Consensus        22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~~   90 (167)
T 2re1_A           22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-------DYKQ---TLEILSE-RQD   90 (167)
T ss_dssp             ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-------GHHH---HHHHHHH-SST
T ss_pred             cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-------HHHH---HHHHHHH-HHH
Confidence            44578889985 9999999999999999999998765432 34444556666541       2222   2233322 111


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecC---C
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCID---R  232 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~D---R  232 (424)
                      +                        +.        +                  ..|.+    .++...|.|.+.+   +
T Consensus        91 ~------------------------l~--------~------------------~~i~~----~~~~a~vsvvG~~m~~~  116 (167)
T 2re1_A           91 S------------------------IG--------A------------------ASIDG----DDTVCKVSAVGLGMRSH  116 (167)
T ss_dssp             T------------------------TT--------C------------------SEEEE----ESSEEEEEEECSSCTTC
T ss_pred             H------------------------cC--------C------------------ceEEe----cCCEEEEEEECCCcCCC
Confidence            1                        00        0                  11222    1357889999876   9


Q ss_pred             hhHHHHHHHHHHhCCceEEEEE
Q 014457          233 PKLLFDTLCALTDLQYVVFHAA  254 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~  254 (424)
                      ||+++++..+|++.|+||....
T Consensus       117 ~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A          117 VGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             CCHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCHHHHHHHHHHHCCCcEEEEE
Confidence            9999999999999999999843

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.08  E-value=0.015  Score=56.23  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeec-CCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQT-DGCTLDTESQRQKLTQCLIAAIER---  295 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~-~g~~~~~~~~~~~l~~~L~~al~r---  295 (424)
                      ..+++|.|+|||||++.|+..|+++|+||.+.+-++  ..|+......+..+ .+...    ..+.|++.|.+.-++   
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            468999999999999999999999999999999986  33443222222111 01011    346677777543211   


Q ss_pred             -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEE
Q 014457          296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVS  329 (424)
Q Consensus       296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~  329 (424)
                           ...+..++-|..--+---|.++-...++..+++.
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~  124 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMD  124 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcE
Confidence                 1122334444444444467777777777666443

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.04  E-value=0.0024  Score=61.75  Aligned_cols=65  Identities=20%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ..+|++.|+||||+.+.|++.|+++||||.+...++  ..+++.-.+.+.-+ .. ..    ..+.|++.|..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~-~~----~~~~L~~~f~~   72 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA-AK-VI----PLASLRTGFGV   72 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES-SC-CC----CHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC-CC-CC----CHHHHHHHHHH
Confidence            468999999999999999999999999999999874  56776655555432 21 12    23667777754

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.97  E-value=0.003  Score=60.99  Aligned_cols=65  Identities=14%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      ..+|++.|+||||+.+.|++.|+++||||.+...++  ..+++.-...+.-+ .  ..    ..+.|++.|...
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~--~~----~~~~L~~~f~~l   74 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-D--DF----DEAGFRAGLAER   74 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-S--SC----CHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-C--CC----CHHHHHHHHHHH
Confidence            478999999999999999999999999999999885  56666555444432 2  12    236777777543

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.95  E-value=0.0018  Score=57.33  Aligned_cols=63  Identities=14%  Similarity=0.279  Sum_probs=49.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC--ceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE--KATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      +.|.|...||||+|++|+.+|+++|+||.+..+.+..+  ...=+|.+. .  .   +..+++|.+++.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d---~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--D---EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--C---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--c---HHHHHHHHHHHcCC
Confidence            57899999999999999999999999999998875443  244455553 2  1   56888999998873

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.93  E-value=0.0026  Score=61.55  Aligned_cols=67  Identities=10%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ..+|++.|+||||+.++|++.|+++||||.+..-++  ..+++.-...+.-+......    ..+.|++.|..
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~   78 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEP   78 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHH
Confidence            468999999999999999999999999999999885  56666544444321001011    23667777644

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.92  E-value=0.022  Score=54.88  Aligned_cols=102  Identities=12%  Similarity=0.083  Sum_probs=64.6

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER---  295 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r---  295 (424)
                      ...+++|.|+|||||++.|+..|+++|+||.+.+.++  ..|+......+ +..+  .    ..+.|++.|...-++   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~--~----~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIPV--A----GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECCC---------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcCC--C----CHHHHHHHHHHHHHHcCC
Confidence            3579999999999999999999999999999999975  34433222222 1111  1    123566666543221   


Q ss_pred             -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEE
Q 014457          296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVS  329 (424)
Q Consensus       296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~  329 (424)
                           ...+..++-|-.--+---|.++....++..+++.
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  117 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDME  117 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeE
Confidence                 1122344555444444577888888877766543

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.92  E-value=0.0061  Score=53.75  Aligned_cols=103  Identities=12%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             CCeEEEEEEe-cCChhHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH---H
Q 014457          220 KGYSVVNIKC-IDRPKLLFDTLCALTDLQYVVFHAAISSK---GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA---A  292 (424)
Q Consensus       220 ~~~tvV~V~~-~DRpgLL~~i~~~L~~~gl~I~~A~I~T~---~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---a  292 (424)
                      ++.+.|+|.+ +|+||.++++..+|++.|+||..-.....   .|...-.|.|...         ..++..+.|++   .
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~---------d~~~a~~~L~~~~~~   84 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD---------FAQEALEALEPVLAE   84 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG---------GHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH---------HHHHHHHHHHHHHHH
Confidence            3677888876 89999999999999999999988554321   2344445777432         12222333333   2


Q ss_pred             Hhhc---CCCceEEEEEeCC---CCchHHHHHHHHHHCCceEEEE
Q 014457          293 IERR---VSHGLRLEICTQN---RMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       293 l~rr---~~~~~~lev~~~D---rpGLL~~Itr~l~e~gl~I~~A  331 (424)
                      +.-.   .+....+.|.+.+   +||+++++.++|.+.|+||...
T Consensus        85 ~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           85 IGGEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             HCCEEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             hCCcEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence            2211   1124568888876   9999999999999999999663

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.90  E-value=0.0026  Score=61.40  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ...+|++.|+||||+.+.|++.|+++||||.+...++  ..+++.-...+.-  .+  .    .++.|++.|..
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~--~----~~~~L~~~f~~   71 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PV--A----GVNDFNSAFGK   71 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC---------CHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CC--C----CHHHHHHHHHH
Confidence            4578999999999999999999999999999999874  5666655444432  11  1    12466777644

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.90  E-value=0.0023  Score=62.20  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ..+|++.|+||||+.+.|++.|+++||||.++..++.  .+++.-.+.+.-+ .+ ..    ..+.|++.|..
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~-~~-~~----~~~~L~~~l~~   88 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD-TL-PF----DLDGFREAFTP   88 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG-GS-SS----CHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC-CC-CC----CHHHHHHHHHH
Confidence            4689999999999999999999999999999998863  6766555544431 11 12    23666777644

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=96.86  E-value=0.073  Score=47.34  Aligned_cols=139  Identities=14%  Similarity=0.152  Sum_probs=84.6

Q ss_pred             CCCcEEEEEE-eCCcchHHHHHHHHHHHcCceEeeEEEEcC---CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           78 STENTALEVT-GVDRPGLMSEISAVLYELGCHVPAAVAWTH---KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        78 ~~~~t~iev~-~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~---~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..+.+.|+|. .+|+||.+++|+..|++.|+||..-...+.   ++...-.|.+...       +.   ++..+.|.+ +
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~-------d~---~~a~~~l~~-~   80 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS-------DG---RRAMEILKK-L   80 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH-------HH---HHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc-------cH---HHHHHHHHH-H
Confidence            3456788884 699999999999999999999987766654   3333333666441       11   222222211 1


Q ss_pred             ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---
Q 014457          154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---  230 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---  230 (424)
                      ..+                        +.                          ...|.+.    .+...|.|.+.   
T Consensus        81 ~~~------------------------~~--------------------------~~~v~~~----~~~a~VsvVG~gm~  106 (178)
T 2dtj_A           81 QVQ------------------------GN--------------------------WTNVLYD----DQVGKVSLVGAGMK  106 (178)
T ss_dssp             TTT------------------------TT--------------------------CSEEEEE----SCEEEEEEEEECCT
T ss_pred             HHh------------------------cC--------------------------CCeEEEe----CCeEEEEEEcCCcc
Confidence            110                        00                          0112221    24678888876   


Q ss_pred             CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457          231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE  294 (424)
Q Consensus       231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~  294 (424)
                      +.||+++++..+|++.|+||..-.  |..-.  -.|.|..         +..++..+.|.+++.
T Consensus       107 ~~~Gv~arif~aLa~~~InI~~is--tSe~~--Is~vV~~---------~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A          107 SHPGVTAEFMEALRDVNVNIELIS--TSEIR--ISVLIRE---------DDLDAAARALHEQFQ  157 (178)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCEEE--EETTE--EEEEEEG---------GGHHHHHHHHHHHHT
T ss_pred             cCccHHHHHHHHHHHCCCCEEEEE--cCCCe--EEEEEeH---------HHHHHHHHHHHHHHc
Confidence            899999999999999999998843  42221  1244422         344555566666653

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.82  E-value=0.0038  Score=55.31  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CC-ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HK-TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~-~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      ..|.|...||||+|++|+++|++.|+||.+..+.+ .+ +...-.|.|..        +.+.+++|.++|.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999988875 43 55555665543        245778888887653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.76  E-value=0.0053  Score=53.83  Aligned_cols=59  Identities=25%  Similarity=0.398  Sum_probs=44.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .|+|.+.||+|||++|+++|.++++||..+.+.+.|.     +|+.-.   ..+...+..|.+++..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~---~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA---ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC---CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE---eCCHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999976632     566443   2223455555555554

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.68  E-value=0.13  Score=54.57  Aligned_cols=216  Identities=14%  Similarity=0.195  Sum_probs=126.8

Q ss_pred             CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      .+...|.|+|.   .+||..++++.+|++.|+||..-.  |. +. --.|.|...          ..++..+.|++.+.-
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~~----------d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQR----------DADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGG----------GHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcHH----------HHHHHHHHHHHhhcc
Confidence            45788999987   689999999999999999997665  33 22 333445431          112333455554432


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEE-ecCChh
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIK-CIDRPK  234 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~-~~DRpg  234 (424)
                      .. .          +     ..++-.  +|      |.             ..-.-|..+    ++...|+|. .+|+||
T Consensus       419 ~~-t----------~-----~~~~~~--~~------~~-------------~~v~Gia~~----~~~a~i~i~~~~~~~g  457 (600)
T 3l76_A          419 TL-S----------P-----PKNQTD--TS------HL-------------PAVRGVALD----QDQAQIAIRHVPDRPG  457 (600)
T ss_dssp             CB-C----------C-----CCCCCC-----------C-------------CSCCEEEEE----CSEEEEEEEEEESSTT
T ss_pred             cC-C----------C-----cccccc--cc------cc-------------CceEEEEee----CCEEEEEEecCCCCcc
Confidence            21 0          0     000000  00      00             011234443    356777774 599999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEee----CC--eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcC--------CCc
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSK----GC--FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRV--------SHG  300 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~----~~--~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~--------~~~  300 (424)
                      +.+++...|++.|+||.--.-+..    .|  ..--.|.|..         +..++..+.|++. ....        +..
T Consensus       458 ~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~-~~~~~~~~v~~~~~~  527 (600)
T 3l76_A          458 MAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPL-IKDWLDAAIVVNKAI  527 (600)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHH-TTTSTTCEEEEECCE
T ss_pred             HHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHH-HHhcCCceEEEeCCe
Confidence            999999999999999954433321    13  2334466632         3444455555542 2221        134


Q ss_pred             eEEEEEe---CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          301 LRLEICT---QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       301 ~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                      .++.|.+   ..+||+.+++-++|.++||||..  |+|   .....-++.+..  . .++.+..|.++|.
T Consensus       528 akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~m--ist---SEi~Is~vV~~~--~-~~~Av~alh~~F~  589 (600)
T 3l76_A          528 AKVSIVGSGMIGHPGVAAHFFAALAQENINIEM--IAT---SEIKISCVVPQD--R-GVDALKAAHSAFN  589 (600)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCE--EEE---CSSEEEEEEEGG--G-HHHHHHHHHHHTT
T ss_pred             EEEEEECcccccCccHHHHHHHHHHHCCCceEE--EEc---CCceEEEEEeHH--H-HHHHHHHHHHHhC
Confidence            6788876   59999999999999999999998  543   333444444431  0 1235555555543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.67  E-value=0.0031  Score=55.93  Aligned_cols=63  Identities=14%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC--ceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE--KATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      ..|.|...||||+|++|+++|+++|+||.+..+.+..+  ...=+|.|. .  .   +..+++|.+++.+.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~--d---~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G--P---DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E--C---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-c--c---HHHHHHHHHHhcCC
Confidence            57899999999999999999999999999988875443  244455553 1  1   56889999998874

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.63  E-value=0.0066  Score=53.79  Aligned_cols=63  Identities=11%  Similarity=0.219  Sum_probs=49.4

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-C-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-H-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      ..|.|...|+||+|++|+++|++.|+||.+..+.+ . .+...-+|.|..        ++..+++|.++|.++
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999988864 4 355556666653        145677788877654

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.59  E-value=0.14  Score=54.29  Aligned_cols=184  Identities=14%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             CcEEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCC
Q 014457           80 ENTALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH  157 (424)
Q Consensus        80 ~~t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~  157 (424)
                      +.+.|+|.+ +|.||.+++|...|+++|++|.--.-.. .++...-.|.|...       +.   ++.++.|.+ +..+.
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~-------~~---~~a~~~l~~-~~~el  337 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD-------LL---NTAEAVTSA-IAPAL  337 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG-------GH---HHHHHHHHH-HGGGG
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH-------HH---HHHHHHHHH-HHHHh
Confidence            345555553 6899999999999999999995443222 35566666777551       11   222233322 22111


Q ss_pred             CCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---CChh
Q 014457          158 GEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---DRPK  234 (424)
Q Consensus       158 ~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---DRpg  234 (424)
                      ..             +..|     +                         ....|.++    .+...|.|.+.   .+||
T Consensus       338 ~~-------------~~~~-----~-------------------------~~~~v~~~----~~~a~VsvVG~gm~~~~G  370 (600)
T 3l76_A          338 RS-------------YPEA-----D-------------------------QEAEIIVE----KGIAKIAIAGAGMIGRPG  370 (600)
T ss_dssp             SS-------------STTC-----S-------------------------SSSEEEEE----CSEEEEEEECGGGTTCTT
T ss_pred             hc-------------cccc-----c-------------------------CcceeEec----CCeEEEEEECCCcccCcc
Confidence            00             0000     0                         01223332    36789999885   7999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc-CC---------------
Q 014457          235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR-VS---------------  298 (424)
Q Consensus       235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr-~~---------------  298 (424)
                      +.+++..+|++.++||....  +. +. --.|.|..         ...++..+.|.+.+... .|               
T Consensus       371 v~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~---------~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~G  437 (600)
T 3l76_A          371 IAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQ---------RDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRG  437 (600)
T ss_dssp             HHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEG---------GGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCE
T ss_pred             HHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcH---------HHHHHHHHHHHHhhcccCCCccccccccccCceEE
Confidence            99999999999999998765  32 22 12344522         34455666777766321 11               


Q ss_pred             -----CceEEEE-EeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457          299 -----HGLRLEI-CTQNRMGLLSDVTRAFRENGLSVSMAEIG  334 (424)
Q Consensus       299 -----~~~~lev-~~~DrpGLL~~Itr~l~e~gl~I~~A~i~  334 (424)
                           +-..|.| ..+|+||+.++|-..|+++||+|....-+
T Consensus       438 ia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          438 VALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             EEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence                 1234555 45899999999999999999999775443

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.44  E-value=0.012  Score=51.52  Aligned_cols=59  Identities=22%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      .|+|.|.||+|||++|+.+|+++++||....+.+.| .    +++.-+     ..+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g-~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-R----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT-E----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC-E----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            589999999999999999999999999999998773 2    445442     1234556666666533

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.38  E-value=0.061  Score=47.20  Aligned_cols=110  Identities=16%  Similarity=0.250  Sum_probs=71.9

Q ss_pred             CCCcEEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEcC---CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           78 STENTALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWTH---KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        78 ~~~~t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T~---~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..+.+.|+|.+ +|+||.+++|+.+|++.|+||..-.....   .|...-.|.|...       +.++   ..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-------d~~~---a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-------FAQE---ALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-------GHHH---HHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-------HHHH---HHHHHHHHH
Confidence            44578888887 89999999999999999999987543321   2345556766541       2222   122222211


Q ss_pred             ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecC--
Q 014457          154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCID--  231 (424)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~D--  231 (424)
                      . +                        +                       .   . .|.+    +.+...|.|.+.+  
T Consensus        83 ~-~------------------------~-----------------------~---~-~v~~----~~~~a~vsvVG~gm~  106 (167)
T 2dt9_A           83 A-E------------------------I-----------------------G---G-EAIL----RPDIAKVSIVGVGLA  106 (167)
T ss_dssp             H-H------------------------H-----------------------C---C-EEEE----ECSEEEEEEEESSGG
T ss_pred             H-H------------------------h-----------------------C---C-cEEE----eCCEEEEEEECCCcc
Confidence            0 0                        0                       0   0 1222    1256788888865  


Q ss_pred             -ChhHHHHHHHHHHhCCceEEEE
Q 014457          232 -RPKLLFDTLCALTDLQYVVFHA  253 (424)
Q Consensus       232 -RpgLL~~i~~~L~~~gl~I~~A  253 (424)
                       +||+++++..+|++.|+||...
T Consensus       107 ~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A          107 STPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             GSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             cCcCHHHHHHHHHHHCCCCEEEE
Confidence             9999999999999999999543

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.37  E-value=0.01  Score=53.75  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=48.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc--eeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK--ATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      ...|.|...|+||.|++|+.+|+++|+||.+..+....+.  ..=++.|...      +..+++|.+++.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCc
Confidence            3579999999999999999999999999999888633332  2234444322      45789999998873

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.99  E-value=0.078  Score=47.39  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=69.6

Q ss_pred             CeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEe-e--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH---HH
Q 014457          221 GYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISS-K--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA---AI  293 (424)
Q Consensus       221 ~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---al  293 (424)
                      +.+.|+|. .+|+||.+++|...|++.|+||..-.-.. .  .|..--.|+|...+         .++..+.|++   .+
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~---------~~~a~~~L~~~~~el   85 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------GPAAVEKLDSLRNEI   85 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT---------HHHHHHHHHHTHHHH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH---------HHHHHHHHHHHHHhc
Confidence            45666663 68999999999999999999997654332 2  45555567774321         1222233332   22


Q ss_pred             h-hc--C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEE
Q 014457          294 E-RR--V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAE  332 (424)
Q Consensus       294 ~-rr--~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~  332 (424)
                      . ..  . +....+.|.+.   ++||+.+++.++|.++|++|....
T Consensus        86 ~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           86 GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            1 01  1 23457777665   899999999999999999999844

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.65  E-value=0.018  Score=53.06  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=30.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG  337 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g  337 (424)
                      ..|.|.+.||||+|++|+++|+++++||......+..
T Consensus         5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            5789999999999999999999999999999998753

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.51  E-value=0.035  Score=50.23  Aligned_cols=64  Identities=9%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE-cCC-ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW-THK-TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV  152 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~-T~~-~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~  152 (424)
                      ...|.|...|+||.|++|+++|+..|+||.+-.+. |.+ +...-++.|...        +..+++|.++|.++
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCc
Confidence            46799999999999999999999999999987775 554 555555666541        23456777776543

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.50  E-value=0.053  Score=49.41  Aligned_cols=134  Identities=14%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             CCeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEe---eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457          220 KGYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISS---KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER  295 (424)
Q Consensus       220 ~~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T---~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r  295 (424)
                      ++.+.|+|. .+|+||+.++|..+|++.|+||..-.-..   .++.....|.+...+.      .+...+...+...+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~------~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG------PAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGH------HHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhH------HHHHHHHHHHHhhhce
Confidence            457788886 59999999999999999999998754332   2345555676633211      1222222222222211


Q ss_pred             -c---CCCceEEEEE---eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          296 -R---VSHGLRLEIC---TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       296 -r---~~~~~~lev~---~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                       .   -+...++.|.   ...+||+.+++-++|.+.|+||..  |+|   ...+.=++.+..  . ..+.+++|.++|.
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~m--Ist---SEi~IS~vV~~~--d-~~~Av~aLH~~F~  177 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIEL--IST---SEIRISVLCRDT--E-LDKAVVALHEAFG  177 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCE--EEE---CSSEEEEEEEGG--G-HHHHHHHHHHHHT
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEE--EEc---cCCEEEEEEeHH--H-HHHHHHHHHHHhC
Confidence             1   1123455554   458899999999999999999999  454   334444444432  1 1236677777765

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.39  E-value=0.018  Score=52.95  Aligned_cols=49  Identities=18%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-----CceEEEEEEEec
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-----KTRAACIFYIED  129 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-----~~r~~dvf~V~d  129 (424)
                      ...|.+.+.||||+|++|+.+|+++++||......+.     ++.+.-.+.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            4689999999999999999999999999999999984     445555554443

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.37  E-value=0.04  Score=52.94  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=51.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN  374 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~  374 (424)
                      .+.|-+..+|+||-|+++...|+.+|||+++.+-.-... ...-.||| |..|.+-++.. +..-++|......+|
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d~~v-~~aL~~L~~~~~~~k  273 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHREDQNV-HNALENLREFATMVK  273 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTSHHH-HHHHHHHHTTCSEEE
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCcHHH-HHHHHHHHHhcCeEE
Confidence            456666778999999999999999999999988775544 47789999 66787654333 333344544333344

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.32  E-value=1.4  Score=39.02  Aligned_cols=111  Identities=11%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             CCcEEEEEE-eCCcchHHHHHHHHHHHcCceEeeEEEEcC---CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457           79 TENTALEVT-GVDRPGLMSEISAVLYELGCHVPAAVAWTH---KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG  154 (424)
Q Consensus        79 ~~~t~iev~-~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~---~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~  154 (424)
                      .+.+.|+|. -+|+||.+++|..+|++.|+||.--.....   .+...-.|.|...       +.++   ..+.|.+ +.
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~~~~---a~~~L~~-~~   82 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VGPA---AVEKLDS-LR   82 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------THHH---HHHHHHH-TH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------HHHH---HHHHHHH-HH
Confidence            345666654 579999999999999999999976543322   5666667777652       1222   2222222 11


Q ss_pred             cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---C
Q 014457          155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---D  231 (424)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---D  231 (424)
                      .+                        +.        +                  -.|.++    .+...|.|.+.   +
T Consensus        83 ~e------------------------l~--------~------------------~~v~~~----~~va~VsvVG~gm~~  108 (181)
T 3s1t_A           83 NE------------------------IG--------F------------------SQLLYD----DHIGKVSLIGAGMRS  108 (181)
T ss_dssp             HH------------------------HC--------C------------------SEEEEE----SCEEEEEEEEECCTT
T ss_pred             Hh------------------------cC--------c------------------ceEEEe----CCEEEEEEEeccccc
Confidence            00                        00        0                  112221    24678888775   8


Q ss_pred             ChhHHHHHHHHHHhCCceEEEEE
Q 014457          232 RPKLLFDTLCALTDLQYVVFHAA  254 (424)
Q Consensus       232 RpgLL~~i~~~L~~~gl~I~~A~  254 (424)
                      .||+.+++..+|++.|+||....
T Consensus       109 ~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          109 HPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CchHHHHHHHHHHHCCCcEEEEE
Confidence            99999999999999999998866

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.04  E-value=0.18  Score=51.04  Aligned_cols=102  Identities=12%  Similarity=0.139  Sum_probs=70.8

Q ss_pred             CCeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457          220 KGYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISSK---GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER  295 (424)
Q Consensus       220 ~~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~---~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r  295 (424)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-...|.   .|...-.|+|...      +   .++..+.|++. ..
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~---~~~a~~~l~~~-~~  331 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------D---GRRAMEILKKL-QV  331 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------T---HHHHHHHHHHH-HT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------h---HHHHHHHHHHH-HH
Confidence            356788888 699999999999999999999998765442   3434455777331      1   12223334432 11


Q ss_pred             cC--------CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEE
Q 014457          296 RV--------SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMA  331 (424)
Q Consensus       296 r~--------~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A  331 (424)
                      ..        .+...+.|.+.   ++||+++++.++|.++|+||...
T Consensus       332 ~~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          332 QGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             TTTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             HcCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            11        12345777765   89999999999999999999964

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.94  E-value=0.061  Score=52.37  Aligned_cols=111  Identities=16%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             hCC-ceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeC-CCCchHHHHHHHHH
Q 014457          245 DLQ-YVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQ-NRMGLLSDVTRAFR  322 (424)
Q Consensus       245 ~~g-l~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~-DrpGLL~~Itr~l~  322 (424)
                      ..| ++|..-.|....+ ..-.|+|..........                 .....|.|-+..+ |+||-|+++...|+
T Consensus       163 ~Yg~L~il~~~I~D~~~-N~TRFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~Fa  224 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPD-AVTRFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQFA  224 (313)
T ss_dssp             HCTTCEEEESCCCSCTT-CEEEEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHHH
T ss_pred             HcCChhhhhhcccCCCc-ceeEEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence            356 8888877765322 22347776544321100                 0112467777775 99999999999999


Q ss_pred             HCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhcc
Q 014457          323 ENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNK  375 (424)
Q Consensus       323 e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~~  375 (424)
                      .+|||+++.+-.-.. ....-.||| |..|..-++...++| ++|......+|-
T Consensus       225 ~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~aL-~~L~~~~~~~ki  276 (313)
T 3mwb_A          225 SRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDSRVADAL-AGLHRISPATRF  276 (313)
T ss_dssp             TTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSHHHHHHH-HHHHHHCTTCEE
T ss_pred             HCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcHHHHHHH-HHHHHhcCcEEE
Confidence            999999998877544 446778999 666776443333333 455553344554

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=94.67  E-value=0.089  Score=50.07  Aligned_cols=98  Identities=12%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             CCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEe---CCCCchHHHHHHHHH
Q 014457          246 LQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICT---QNRMGLLSDVTRAFR  322 (424)
Q Consensus       246 ~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~---~DrpGLL~~Itr~l~  322 (424)
                      .|++|..-.|....+ ..-.|+|..... +.                   . ...+.|-+..   .|+||-|+++...|+
T Consensus       154 ygL~il~~~I~D~~~-N~TRF~vl~~~~-~~-------------------~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa  211 (267)
T 2qmw_A          154 YGFTPIDTHIEDYPH-NVTRFLVIKNQQ-QF-------------------D-QNATSLMFLITPMHDKPGLLASVLNTFA  211 (267)
T ss_dssp             GTCCEEEECCCSCSC-CEEEEEEEESCC-CC-------------------C-SSCSEEEEEEEESSCCTTHHHHHHHHHH
T ss_pred             CCCcEeeccccCCCC-CceEEEEEecCC-CC-------------------C-CCeEEEEEEcCCCCCCcChHHHHHHHHH
Confidence            377887777765322 223477755433 11                   0 1245677777   899999999999999


Q ss_pred             HCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          323 ENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       323 e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      .+|||+++.+-.-.. ....-.||| |.. .+ +++.++..-++|..
T Consensus       212 ~~gINLtkIESRP~~~~~~~Y~Ffi-D~e-~~-~d~~v~~aL~~L~~  255 (267)
T 2qmw_A          212 LFNINLSWIESRPLKTQLGMYRFFV-QAD-SA-ITTDIKKVIAILET  255 (267)
T ss_dssp             TTTCCEEEEEEEECSSSTTCEEEEE-EES-CC-SCHHHHHHHHHHHH
T ss_pred             HcCCCeeEEEEeecCCCCccEEEEE-EEe-cC-CcHHHHHHHHHHHH
Confidence            999999998877554 447789999 444 34 33433333344444

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.37  E-value=0.48  Score=43.02  Aligned_cols=52  Identities=10%  Similarity=0.235  Sum_probs=37.5

Q ss_pred             CCCcEEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEc---CCceEEEEEEEec
Q 014457           78 STENTALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWT---HKTRAACIFYIED  129 (424)
Q Consensus        78 ~~~~t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T---~~~r~~dvf~V~d  129 (424)
                      +.+.+.|+|.+ +|+||.+++|+.+|++.|+||----...   .++.....|.+..
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~   87 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR   87 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence            44567788764 8999999999999999999997643322   2345555666654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=94.31  E-value=0.15  Score=50.06  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             eEEEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457          301 LRLEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN  374 (424)
Q Consensus       301 ~~lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~  374 (424)
                      +.+-+...  |+||-|+++-..|+.+|||+++.+-.-... ...-.||| |-.|..-++...++| ++|......+|
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~~v~~AL-~~L~~~~~~~k  281 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEERFRDAL-VEIAEHGDWAK  281 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSHHHHHHH-HHHHHTTCEEE
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCHHHHHHH-HHHHHhCCeEE
Confidence            44444454  799999999999999999999988775444 46778998 667877554443444 34554333344

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=94.06  E-value=2.6  Score=42.37  Aligned_cols=136  Identities=15%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             CcEEEEEE-eCCcchHHHHHHHHHHHcCceEeeEEEEcC---CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457           80 ENTALEVT-GVDRPGLMSEISAVLYELGCHVPAAVAWTH---KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA  155 (424)
Q Consensus        80 ~~t~iev~-~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~---~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~  155 (424)
                      +.+.|+|. -+|+||.+++|...|+++|+||.--...|.   .+...-.|.|...       +.++.   .+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~a---~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRRA---MEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHHH---HHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHHH---HHHHHH-HHH
Confidence            45567777 589999999999999999999987655453   3445556666541       22222   222322 111


Q ss_pred             CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---CC
Q 014457          156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---DR  232 (424)
Q Consensus       156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---DR  232 (424)
                      +...                                                  ..|.++    .+...|.|.+.   +.
T Consensus       332 ~~~~--------------------------------------------------~~v~~~----~~~a~vsvVG~gm~~~  357 (421)
T 3ab4_A          332 QGNW--------------------------------------------------TNVLYD----DQVGKVSLVGAGMKSH  357 (421)
T ss_dssp             TTTC--------------------------------------------------SEEEEE----CCEEEEEEECGGGTSC
T ss_pred             HcCC--------------------------------------------------ceEEEe----CCeEEEEEEccCcccC
Confidence            1100                                                  112221    25678888874   89


Q ss_pred             hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457          233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI  293 (424)
Q Consensus       233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al  293 (424)
                      ||.++++..+|++.|+||..-  .+..-.+  .|.|..         +..++..+.|.+++
T Consensus       358 ~Gv~a~~f~aL~~~~InI~~i--s~Se~~i--s~vV~~---------~d~~~Av~~Lh~~f  405 (421)
T 3ab4_A          358 PGVTAEFMEALRDVNVNIELI--STSEIRI--SVLIRE---------DDLDAAARALHEQF  405 (421)
T ss_dssp             TTHHHHHHHHHHHTTCCCCEE--EEETTEE--EEEEEG---------GGHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHCCCCEEEE--EcCCCeE--EEEEeH---------HHHHHHHHHHHHHH
Confidence            999999999999999999833  3333222  244422         24455556666654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.77  E-value=0.18  Score=50.72  Aligned_cols=47  Identities=23%  Similarity=0.393  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      ..+|-+.-.|+||.+..|+.+|.++|+||..-...+.|+.+.-++-+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            46788899999999999999999999999999999988887777766

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=91.30  E-value=0.83  Score=47.50  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=50.0

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457          298 SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQ  364 (424)
Q Consensus       298 ~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~  364 (424)
                      ++++.|-+.-.|+||.+..|+..|.++|+||....+.-.  |+.+.-.+.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            347788899999999999999999999999999999754  4555555555    23666778888864

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=89.39  E-value=2.6  Score=42.88  Aligned_cols=132  Identities=12%  Similarity=0.168  Sum_probs=82.2

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh-hc
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE-RR  296 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~-rr  296 (424)
                      +.+.|+|.+   ++.||.++++...|++.+++|....  + +. .--.|+|...+-..     ..+++.+.|...+. ..
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~-~~-~~is~~V~~~d~~~-----~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--S-GV-DSVSLVIEDCKLDG-----KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--E-ET-TEEEEEEEHHHHTT-----THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--c-CC-CEEEEEEecchHHH-----HHHHHHHHHHHhcCCCc
Confidence            567888886   6999999999999999999998643  2 11 12346664322110     22334444443331 01


Q ss_pred             C---CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          297 V---SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       297 ~---~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                      +   .....+.|.+.   .+||+.+++.++|.++|+||..  | ++|....+.-+|.+..  - .++.+..|.++|.
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~m--I-sqgtSei~Is~vV~~~--d-~~~Av~aLH~~ff  438 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRM--I-DQGSSEINVIVGVETV--D-FEKAVKSIYNAFN  438 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEE--E-EECSCTTEEEEEEEGG--G-HHHHHHHHHHHHC
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEE--E-EecCCCceEEEEEcHH--H-HHHHHHHHHHHHh
Confidence            1   12357777765   5899999999999999999988  3 3455555544444432  0 1235566655554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=88.93  E-value=1.2  Score=44.81  Aligned_cols=48  Identities=10%  Similarity=-0.033  Sum_probs=42.1

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEE
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFI  268 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V  268 (424)
                      ++..+.+.-.|+||.+..|+.+|.++|+||....+.+.|+.++-++-|
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            456788999999999999999999999999999999988888655544

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=88.05  E-value=0.47  Score=47.85  Aligned_cols=67  Identities=16%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      .+.|-+..+|+||-|+++...|+.+|||+++.+-.-.. ....-.||| |.. .. +++.++++-++|...
T Consensus        34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfV-D~e-h~-~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLD-KR-TKPVLGSIIKSLRND  101 (429)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBC-GG-GHHHHHHHHHHHHHT
T ss_pred             eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEE-EEe-eC-CCHHHHHHHHHHHhh
Confidence            56777778899999999999999999999998776543 446779999 554 32 344344444455543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.86  E-value=1.9  Score=44.71  Aligned_cols=65  Identities=18%  Similarity=0.340  Sum_probs=50.2

Q ss_pred             CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHH
Q 014457           77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEE  147 (424)
Q Consensus        77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~  147 (424)
                      ....+..|-+.-.|+||.+.+|+.+|.++|+||.+.++..  .++.+.-++.+.++     + +++.+++|++
T Consensus       450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~-----~-~~~~l~~l~~  516 (529)
T 1ygy_A          450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD-----V-PDDVRTAIAA  516 (529)
T ss_dssp             EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC-----C-CHHHHHHHHH
T ss_pred             ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC-----C-CHHHHHHHhc
Confidence            3455778889999999999999999999999999999987  46677777776542     4 3445555543

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=85.79  E-value=1.9  Score=43.80  Aligned_cols=50  Identities=20%  Similarity=0.353  Sum_probs=35.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeC
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDA  349 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~  349 (424)
                      .+-+.+...|+||.|++|+.+|.++|++|.+..=.-.  ++.......+|+.
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~  410 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV  410 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence            4678888999999999999999999999988543211  1112455556554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.71  E-value=1.3  Score=44.66  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=43.4

Q ss_pred             CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC
Q 014457          221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD  272 (424)
Q Consensus       221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~  272 (424)
                      +...|.+.-+|.||.|.+|..+|+++|+||..-...|.++++   |.+.|.+
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~---y~~~d~~  390 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG---YLVMEAD  390 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE---EEEEEEC
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE---EEEEEec
Confidence            567999999999999999999999999999999999999988   4455555

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.35  E-value=3.1  Score=41.89  Aligned_cols=47  Identities=21%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      ..+|-+.-.|+||.|..|+.+|+++|+||..-...|.|+-+.-+.-|
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            47999999999999999999999999999999999999887666555

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=84.48  E-value=3.1  Score=43.03  Aligned_cols=135  Identities=12%  Similarity=0.174  Sum_probs=82.2

Q ss_pred             CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCC-CHHHHHHHHHHHHHHHhhc
Q 014457          221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLD-TESQRQKLTQCLIAAIERR  296 (424)
Q Consensus       221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~-~~~~~~~l~~~L~~al~rr  296 (424)
                      +.+.|+|.+   .++||.++++..+|++.|++|..-.  |.  ..--+|+|...+..... ....++++.+.|.. + ..
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--ss--e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~-~-~~  413 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS--EVSISLTLDPSKLWSRELIQQELDHVVEELEK-I-AV  413 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE--TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTT-T-SE
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eC--CCeEEEEEechHhhhhhHHHHHHHHHHHHhCC-C-Ce
Confidence            578899986   6899999999999999999999873  21  11234666433211110 11223333333321 0 01


Q ss_pred             C---CCceEEEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          297 V---SHGLRLEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       297 ~---~~~~~lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                      .   .+-..+.|.+.  ..||+.+++..+|.++|+||..  | ++|....+.=+|.+...   ..+.+..|.++|.
T Consensus       414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~m--I-sqGsSei~Is~vV~~~d---~~~Av~aLH~~f~  483 (510)
T 2cdq_A          414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQM--I-SQGASKVNISFIVNEAE---AEGCVQALHKSFF  483 (510)
T ss_dssp             EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSE--E-EECTTCSEEEEEEEHHH---HHHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEE--E-EecCCcceEEEEEeHHH---HHHHHHHHHHHHh
Confidence            1   12346667666  7789999999999999999988  4 45666666544544310   0124555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	424
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	0.002

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 79  TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITA 138
           T++  +   G DRPG+ +E+  ++ + GC++  +           +  I          +
Sbjct: 3   TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS--------GS 54

Query: 139 PEMLAHVEEQLE 150
           P  +  VE  L 
Sbjct: 55  PSNITRVETTLP 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	424
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.75
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.49
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.46
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.38
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.14
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.88
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.85
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.7
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.59
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.48
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.44
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.43
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.41
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.14
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.05
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.92
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.92
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.86
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.86
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.78
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.76
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.67
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.21
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.1
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	91.31
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	87.13
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.92
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.7

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=2e-08  Score=78.02  Aligned_cols=65  Identities=22%  Similarity=0.457  Sum_probs=56.2

Q ss_pred             CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      ..+.+|++.|+||||++++++++|+++||||.+++.++.++...-++.|+-+        +..+++++..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999999999988752        3456778877754

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.49  E-value=6.5e-07  Score=69.22  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      ..+++|++.|+||||+++++++.|+++|+||.+++..+.++...-.+.|.-+       ++..++|+..|++
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            3578999999999999999999999999999999999988876666666421       2346677776655

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.46  E-value=4e-07  Score=69.87  Aligned_cols=63  Identities=16%  Similarity=0.297  Sum_probs=51.6

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI  151 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~  151 (424)
                      .+|++.|+||||++++|+++|+++||||.+..-.+.++.+.-.+.+.-+ .+.   +   .+.+++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHH
Confidence            5799999999999999999999999999999999988888888877763 222   2   2556677654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.38  E-value=1.3e-06  Score=66.82  Aligned_cols=63  Identities=6%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA  291 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  291 (424)
                      ++|+|.|+||||++++++++|+++|+||.+.+-.+.++...-.+.+..+.+.      ..++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            5899999999999999999999999999999998887765555666544332      23556666654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.14  E-value=2.3e-06  Score=66.99  Aligned_cols=67  Identities=13%  Similarity=0.240  Sum_probs=47.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC----CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG----EKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g----~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      ..++|.++|||||+++||++|+++|+||....-.|+.    +...+.|...-....|- +..++.|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~-~~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCc-cccHHHHHHHHHH
Confidence            4677889999999999999999999999998887764    34566788755433342 1235566666654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.88  E-value=4.5e-05  Score=59.30  Aligned_cols=37  Identities=11%  Similarity=-0.081  Sum_probs=33.7

Q ss_pred             eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee
Q 014457          222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK  258 (424)
Q Consensus       222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~  258 (424)
                      ...|.|.|+|||||+++|+++|+++|+||.+.+-.+.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~   42 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI   42 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccc
Confidence            4578899999999999999999999999999988763

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=6e-05  Score=56.75  Aligned_cols=63  Identities=22%  Similarity=0.354  Sum_probs=49.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHHH
Q 014457          299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQE  365 (424)
Q Consensus       299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~  365 (424)
                      +++.|-+.-.|+||+|+.|+.+|.++|+||....+++.  |+.|.-++-+ |   .+++++.+++|++-
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v-D---~~~~~~vl~~I~~~   66 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL-D---QDVPDDVRTAIAAA   66 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE-S---SCCCHHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc-C---CCccHHHHHHHHcC
Confidence            46789999999999999999999999999999998765  4445554444 2   36667777887654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.70  E-value=3.9e-05  Score=56.76  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHH
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQE  365 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~  365 (424)
                      +|.|..+||||-|++++++|.+.|+||++..+...++.+.-.|.+.|+      ++.++.|+++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~------~~a~~~L~~~   58 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM------DKCIEVLKEK   58 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH------HHHHHHHHHT
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH------HHHHHHHHHC
Confidence            478899999999999999999999999999999888999888887432      2355555543

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.59  E-value=4.7e-05  Score=57.17  Aligned_cols=48  Identities=23%  Similarity=0.332  Sum_probs=34.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-Cc--eeeEEEEEeC
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EK--ATGSFYVMDA  349 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~--a~d~Fyv~d~  349 (424)
                      -|.|.+.||||+|++|+.+|+++|+||......+.. +.  ..=.||+.+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            488999999999999999999999999998877643 33  3446666554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.48  E-value=0.00016  Score=53.10  Aligned_cols=45  Identities=24%  Similarity=0.305  Sum_probs=40.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457          302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV  346 (424)
Q Consensus       302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv  346 (424)
                      .|.|..+||||.|++|+.+|+++|+||....+....+.+.-.|-|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            488999999999999999999999999999988777887777644

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.44  E-value=2.6e-05  Score=58.70  Aligned_cols=48  Identities=15%  Similarity=0.376  Sum_probs=36.6

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceE--EEEEEEec
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRA--ACIFYIED  129 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~--~dvf~V~d  129 (424)
                      ..|.|.+.||||+|++|+.++++++.||.+....+ .+|.+  ...|++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            46899999999999999999999999999999887 45544  55666765

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.43  E-value=0.00016  Score=53.31  Aligned_cols=46  Identities=20%  Similarity=0.094  Sum_probs=41.9

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIR  269 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~  269 (424)
                      +|.|..+|+||-|++++.+|.+.|+||....++..++++.-.|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEEC
Confidence            5788999999999999999999999999999998888888777773

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.0005  Score=51.42  Aligned_cols=48  Identities=25%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEE
Q 014457           80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYI  127 (424)
Q Consensus        80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V  127 (424)
                      +.+.+.+.-.|+||.+++|+.+|++.|+||...++.+  .++.+.-++-+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            3567889999999999999999999999999999877  46666655554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.14  E-value=0.00045  Score=50.67  Aligned_cols=45  Identities=11%  Similarity=0.029  Sum_probs=39.5

Q ss_pred             EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEE
Q 014457          224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFI  268 (424)
Q Consensus       224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V  268 (424)
                      .+.|...||||.|++++++|++.|+||.+..+....++.+-.+.|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            588999999999999999999999999999998766766666655

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.001  Score=49.68  Aligned_cols=65  Identities=17%  Similarity=0.365  Sum_probs=51.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS  369 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~  369 (424)
                      +.|.+...|+||+|++|+..|+..|+||.+..+....+...-.+-++-. |   +++.++++.++|.+.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~-g---~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK-G---DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE-E---CTTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE-c---CHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999998776666655544332 2   235678888888774

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0022  Score=48.41  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=46.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +.+|-+.-.|+||.|++|+.+|.++|+||......+.++-+..+-.+ +     ++++..+++.++|.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i-~-----~D~~~~~~v~~~i~~   73 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI-E-----ADEDVAEKALQAMKA   73 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE-E-----CCHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE-E-----CCCCCHHHHHHHHHC
Confidence            56888999999999999999999999999999888877655443323 2     233444555555543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0014  Score=48.62  Aligned_cols=66  Identities=17%  Similarity=0.339  Sum_probs=52.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..|.+...|+||+|++|+..|+..|+||.+..++-..+...-.|-++-. |   ++..++++.++|.+.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~---~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCCC
Confidence            3688899999999999999999999999999998555565555555432 2   4567889999988843

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0021  Score=47.66  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE-cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW-THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~-T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..|.+...|+||+|++|+++|+..|+||.+-.+. |.+..+..+-.+..   |    +++.+++|..+|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhCCC
Confidence            3688899999999999999999999999998887 45555554444443   2    2456778888876543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.86  E-value=0.0023  Score=47.89  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             EEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          305 ICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       305 v~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      +...|+||-|+++...|+++|||+++.+-.-.. ..-.-.||| |-+|.. ++. ++++-++|..
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~~-~~~-~~~~l~~L~~   68 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSAI-TTD-IKKVIAILET   68 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCCS-CHH-HHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecCC-cHH-HHHHHHHHHH
Confidence            345699999999999999999999998776443 446778999 445653 443 4444445544

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.86  E-value=0.0023  Score=47.52  Aligned_cols=65  Identities=12%  Similarity=0.293  Sum_probs=48.1

Q ss_pred             EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE-cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457           82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW-THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV  153 (424)
Q Consensus        82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~-T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L  153 (424)
                      ..|.+...|+||.|++|+++|+..|+||.+-.+. |....+..+-.+..   |    +++.+++|..+|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~---~----~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---G----PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE---C----CHHHHHHHHHHHhCCc
Confidence            4678999999999999999999999999998887 44444443333333   1    2457788888876643

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.78  E-value=0.0015  Score=48.55  Aligned_cols=66  Identities=15%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457          301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV  370 (424)
Q Consensus       301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~  370 (424)
                      ..|.+...|+||+|++|+..|+..|+||.+..+.-..+...-.+-++-. |   +++.++++.++|.+.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~-~---~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G---PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE-C---CHHHHHHHHHHHhCCc
Confidence            4688999999999999999999999999999998554554444433222 2   3567888999988743

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.0039  Score=46.40  Aligned_cols=63  Identities=5%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-e-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457          223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-K-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA  292 (424)
Q Consensus       223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a  292 (424)
                      ..+.+...|+||+|.++++.|+..||||.+..+.. . .+...-++.+.   |.    +...+.+.+.|.+.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~---g~----~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---GD----DKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---EC----TTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE---cC----HHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999975 3 34444444442   21    13566777766544

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0067  Score=45.59  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=38.6

Q ss_pred             cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEE
Q 014457           81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYI  127 (424)
Q Consensus        81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V  127 (424)
                      ...|.+.-.|+||.|++|+.+|++.|+||.+-...+.++....+..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            36788889999999999999999999999999888866544444433

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.0031  Score=49.01  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=43.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec-CCceeeEEEEEeCCCC
Q 014457          300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN-GEKATGSFYVMDASGH  352 (424)
Q Consensus       300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~Fyv~d~~g~  352 (424)
                      .+.|-+...|+||-|+++...|+++|||+++.+-... +....-.||| |..|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            5788888999999999999999999999999776644 3445668999 66676

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.10  E-value=0.1  Score=40.01  Aligned_cols=54  Identities=13%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCC
Q 014457          220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGC  274 (424)
Q Consensus       220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~  274 (424)
                      .+.+-|.+..+|+||-|+++...|+++|+|+.+-.-.- .+....-.||| +.+|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~   68 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKR   68 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGG
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccC
Confidence            34567777789999999999999999999998766543 22222224888 55665

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.31  E-value=0.59  Score=34.07  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCC
Q 014457          225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGC  274 (424)
Q Consensus       225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~  274 (424)
                      +.+...|+||-|+++-..|+++|+|+.+-.-.= .+....-.||| +.+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecC
Confidence            344457999999999999999999998866543 33222234888 45665

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=87.13  E-value=0.82  Score=32.05  Aligned_cols=60  Identities=17%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             EEEEEe---CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457          302 RLEICT---QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG  367 (424)
Q Consensus       302 ~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~  367 (424)
                      .+.+.+   .++||+.+++...|.++|+||..  |+.-.....=.|.|.+.+.    ++.++.|.++|-
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~m--Isq~~Se~~Is~~V~~~d~----~~Av~~Lh~~F~   65 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKM--IAQGSSEVNISFVIDEKDL----LNCVRKLHEKFI   65 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCE--EEESSCSSEEEEEEEGGGH----HHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHH--eeecCccceEEEEEeHHHH----HHHHHHHHHHHh
Confidence            456665   58999999999999999999998  4322223334666644421    235666666654

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.92  E-value=0.42  Score=35.83  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEE
Q 014457           79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAV  113 (424)
Q Consensus        79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~  113 (424)
                      .+.+.|.|.|.   ++||.+++|+.+|++.|+||.--.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            35688999985   999999999999999999998765

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.70  E-value=2.1  Score=32.21  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             eEEEEEe---CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457          301 LRLEICT---QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG  368 (424)
Q Consensus       301 ~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~  368 (424)
                      ..+.+.+   .++||++++|..+|+++|++|....-++  ....=.|.|...+    .++.++.|.+++..
T Consensus        16 a~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~--Se~~Isf~V~~~d----~~~a~~~L~~~f~~   80 (100)
T d2hmfa3          16 ALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS--SETNISLVVSEED----VDKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC--TTCCEEEEECSTT----HHHHHHHHHHHHCC
T ss_pred             EEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC--CcceEEEEEeHHH----HHHHHHHHHHHHHh
Confidence            4677766   6999999999999999999999843222  2233356663321    12467778777754