Citrus Sinensis ID: 014502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MALACRVLSVAKSSRYLLMPLRFDRLlcntntnstsvsssnplisrllqvpvsqikttldsvdifafnssqfSWDALITSLQSSSPKKAQLVLEWRLDKmlkgnescLDEYACLIALSgkvqnvpfAMHVFTSmeaqgikpdsavFNSLICACLCSGDVVTALSLFEIMVSseeykpnsktydAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHgslkardfdSVDRFYEEMMslgiipsipILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDrlddveysvgrmgkqglsfksaEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Flexible Loop (DISEMBL)
malacrvlsvakssrylLMPLRFDRLLCNTNTnstsvsssnpliSRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSeeykpnsktYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSlgiipsipILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMgkqglsfksaedVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYrraglsgkldsviNEMKFAEYM
Low Complexity Region (SEG)
MALACRVLSVAKSSRYLLMPLRFDRLLCntntnstsvsssnPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Disordered region (IsUnstruct)
***ACRVLSVAKSSRYLLMPLRFDRLLCNTNT*********PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQ*****KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN********
Disordered Region (DISOPRED)
*ALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Disordered Region (DISEMBL)
MALACRVLSVAKSSRYLLMPLRFDRLLCNTNT********NPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Disordered Region (DISPRO)
MALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA*Y*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALACRVLSVAKSSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q0WVK7	741	Pentatricopeptide repeat-	yes	no	0.567	0.323	0.259	1e-16
O49343	452	Pentatricopeptide repeat-	no	no	0.768	0.719	0.229	4e-16
Q8GWE0	702	Pentatricopeptide repeat-	no	no	0.702	0.423	0.247	5e-16
Q9M302	659	Pentatricopeptide repeat-	no	no	0.586	0.376	0.232	8e-16
Q9C6S6	840	Putative pentatricopeptid	no	no	0.645	0.325	0.256	9e-16
Q9ZU88	481	Pentatricopeptide repeat-	no	no	0.768	0.675	0.236	1e-15
Q9SH26	577	Pentatricopeptide repeat-	no	no	0.477	0.350	0.263	4e-15
Q9CAN6	590	Pentatricopeptide repeat-	no	no	0.548	0.393	0.25	5e-15
Q8GZ63	574	Pentatricopeptide repeat-	no	no	0.827	0.609	0.218	7e-15
Q76C99	791	Protein Rf1, mitochondria	N/A	no	0.550	0.294	0.250	1e-14

>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 3/243 (1%)

Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
           Y  LI    K  ++  A   F  M ++ I PD   + ++I      GD+V A  LF  M 
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 413

Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
             +  +P+S T+   I+G+   G++    + +   I AG S NV TY +LI G  K  D 
Sbjct: 414 C-KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL 290
           DS +    EM  +G+ P+I     ++ GLC    ++     +      G   +      L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532

Query: 291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ 350
           +  YC+ G +D+ +E L+ +      P ++   F+ ++  + L   L+D E  +  M  +
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVT--FNVLMNGFCLHGMLEDGEKLLNWMLAK 590

Query: 351 GLS 353
           G++
Sbjct: 591 GIA 593

Arabidopsis thaliana (taxid: 3702)

>sp|O49343|PP177_ARATH Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 148/336 (44%), Gaps = 11/336 (3%)

Query: 92  VLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN 147
           VLEWR  +     + C+    +EYA  I ++G+ +++  A+++F     + ++  S V+N
Sbjct: 88  VLEWRRGQ----KDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTAS-VYN 142

Query: 148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA 207
           SL+   + +G      SLF+         P   TY+  +S +  L  V  M   +     
Sbjct: 143 SLMSVYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQK 202

Query: 208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR 267
                N  TY  LI G + A ++D ++  ++EM    + P     + +L G      L+R
Sbjct: 203 VKLPPNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNR 262

Query: 268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI 327
           ++   + +       +  + + ++  YC+   V++  +++E L       E L      +
Sbjct: 263 MEEMYEVIKDQVGVNSGPLVRAMICAYCKKA-VEDRVQKIENLLSLLSGEEYLPWLNVLL 321

Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS- 386
           IRLYA  D ++ +E  +    +Q      +  +  +I +YFRC   D L  F+   + + 
Sbjct: 322 IRLYAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAG 381

Query: 387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
           +KL R+ Y   +  Y       +++ V+NEM    Y
Sbjct: 382 WKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNY 417

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 46/343 (13%)

Query: 64  IFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
           I  F    F  DA++T    ++P+ A LVL   L+ M    E  L  Y   + +  K ++
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVFRKSKD 190

Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD 183
           +  +  +F  M  +GIKPD+A F ++I     +G    A+  FE M SS   +P++ T  
Sbjct: 191 LEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPDNVTMA 249

Query: 184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL 243
           A I  +   GNVD     Y       + ++  T+ +LI     + ++D     YEEM +L
Sbjct: 250 AMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKAL 309

Query: 244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--------- 294
           G+ P++ I  ++++ +   ++  + K   K L+  G+  N +    LV+ Y         
Sbjct: 310 GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDA 369

Query: 295 -------------------------CELGR-VDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
                                    C   R VDE  E  + +  C    P+     FS +
Sbjct: 370 LAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWT--FSSL 427

Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRC 370
           I +YA S R+ + E ++ +M + G      E    V+ S  +C
Sbjct: 428 ITVYACSGRVSEAEAALLQMREAGF-----EPTLFVLTSVIQC 465

Involved in chloroplast RNA processing. Could bind RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 2/250 (0%)

Query: 74  WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
           ++ALI  L      K     E   + + KG    +  Y+ LI +      +  A    T 
Sbjct: 249 YNALINGLCKEHDYKG--AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306

Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
           M  +G  P+    +SL+  C   G    AL L+  M+     +PN   Y+  + GF S G
Sbjct: 307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366

Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
           N+      ++     G S N++TY SLI+G  K    D     + +M++ G  P++ +  
Sbjct: 367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426

Query: 254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
            ++E LC   K    +S ++ +       +       +K  C+ GR+D  E+    + + 
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486

Query: 314 NQSPEVLLHF 323
           ++ P  ++ +
Sbjct: 487 HRCPPNIVTY 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 16/289 (5%)

Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
           +G E  L  Y+ LI    K   +     +F+    +G+K D  VF+S I   + SGD+ T
Sbjct: 315 RGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLAT 374

Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
           A  +++ M+  +   PN  TY   I G    G +      Y   +  G   ++ TY SLI
Sbjct: 375 ASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLI 433

Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
            G  K  +  S    YE+M+ +G  P + I   +++GL  +  +     F   +LG   +
Sbjct: 434 DGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIR 493

Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE 341
           +N  +   L+  +C L R DE  +    +      P+V    F+ ++R+  +  RL++  
Sbjct: 494 LNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--FTTVMRVSIMEGRLEEAL 551

Query: 342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR 390
           +   RM K GL     E   +  C+         +D F  H+K +  L+
Sbjct: 552 FLFFRMFKMGL-----EPDALAYCTL--------IDAFCKHMKPTIGLQ 587

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU88|PP204_ARATH Pentatricopeptide repeat-containing protein At2g48000 OS=Arabidopsis thaliana GN=At2g48000 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 161/342 (47%), Gaps = 17/342 (4%)

Query: 86  PKKAQLVLEWRLDKML-KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
           P  +QLV +WR +K L  G     DEYA  I +SG+++NV  A+ +F     +     ++
Sbjct: 94  PVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLF----HESANKTTS 149

Query: 145 VFNSLICACLCSGDVVTALSLFEIMVSSEE----YKPNSKTYDAFISGFSSLGNVDAMNK 200
           V+N+L+ A LC+G       LF    S ++      P+  TY+  IS +  L  V+ M  
Sbjct: 150 VYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMES 209

Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC 260
            +          +  TY +LI G + A D+D ++  +  M +  + P++     +L G  
Sbjct: 210 VFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYA 269

Query: 261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY---CELGRVDELEEQLETLTKCNQSP 317
               L R++   + +     +    + + ++  Y   C   R+ +++   + + K +  P
Sbjct: 270 NSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKP 329

Query: 318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD 377
            + L     ++++YA  D L  +E  + +   +GL  ++   +  ++ SYFRC A D+L 
Sbjct: 330 WLYLL----LMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRCNAVDKLA 385

Query: 378 LFLDHIKGS-YKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
            F+     + +K+ R+ +  L+  Y       ++++V++EM+
Sbjct: 386 KFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEME 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
           A  ++  M  + I PD   ++SLI        +  A  +FE+M+S + + PN  TY+  I
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLI 407

Query: 187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
           +GF     +D   + +      G   N  TY +LIHG  +ARD D+    +++M+S G+ 
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467

Query: 247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
           P+I     +L+GLC   KL++     ++L     +        +++  C+ G+V++  + 
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 527

Query: 307 LETLTKCNQSPEVLLH--FFSGIIR 329
             +L+     P+V+++    SG  R
Sbjct: 528 FCSLSLKGVKPDVIIYNTMISGFCR 552

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 40/272 (14%)

Query: 97  LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
           L+KM KG  E+ +  Y  +I    K +++  A  +F  ME +GIKPD   +N LI +CLC
Sbjct: 238 LNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI-SCLC 296

Query: 156 S------------------------------------GDVVTALSLFEIMVSSEEYKPNS 179
           +                                    G +V A  L++ MV S+   P+ 
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356

Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
             Y+  I GF     V+   + +      G   N  TY +LIHG  +ARD D+    +++
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 416

Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
           M+S G+ P I     +L+GLC    ++      +++     K++      +++  C+ G+
Sbjct: 417 MVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGK 476

Query: 300 VDELEEQLETLTKCNQSPEVLLH--FFSGIIR 329
           V++  +   +L+     P V+ +    SG  R
Sbjct: 477 VEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 508

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 7/357 (1%)

Query: 65  FAFNSSQFSWDALITSLQ-SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN 123
              N +  +++ LI     +  P+++  +L+  L++        +  +  L+    K + 
Sbjct: 144 LGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCKKKK 203

Query: 124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTY 182
           V  A  V   ME  G++PD+  +N++    +  G+ V A S + E MV  E+ KPN +T 
Sbjct: 204 VEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNGRTC 263

Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
              + G+   G V    ++           N+  + SLI+G ++  D D +D     M  
Sbjct: 264 GIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKE 323

Query: 243 LGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE 302
             +   +     V+    +   +++     K ++  G K + +    L K Y       +
Sbjct: 324 CNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKEPKK 383

Query: 303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEM 362
            EE LETL      P V++  F+ +I  +  +  +DD      +M K G+S  + +  E 
Sbjct: 384 AEELLETLI-VESRPNVVI--FTTVISGWCSNGSMDDAMRVFNKMCKFGVS-PNIKTFET 439

Query: 363 VICSYFRCAAYDRLDLFLDHIKG-SYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK 418
           ++  Y       + +  L  ++G   K   +T+  L   +R AGL+ + +  IN +K
Sbjct: 440 LMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALK 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 22/255 (8%)

Query: 79  TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA-----CLIALSGKVQNVPFAMHVFTS 133
           T LQ  + K A + +   LD M++ N    D Y      C  A  GKV     AM VF+ 
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVR-NGIHPDHYVFSILICAYAKQGKVDQ---AMLVFSK 396

Query: 134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
           M  QG+ P++  + ++I     SG V  A+  FE M+  E   P +  Y++ I G  +  
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNSLIHGLCTC- 454

Query: 194 NVDAMNKWYAAN------IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
                NKW  A       +  G  +N   + S+I    K       ++ +E M+ +G+ P
Sbjct: 455 -----NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQL 307
           ++     ++ G C   K+D     L  ++  G K N      L+  YC++ R+++     
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 308 ETLTKCNQSPEVLLH 322
           + +     SP+++ +
Sbjct: 570 KEMESSGVSPDIITY 584

Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
359476047	420	PREDICTED: pentatricopeptide repeat-cont	0.983	0.990	0.578	1e-131
147812171	1331	hypothetical protein VITISV_033964 [Viti	0.940	0.299	0.586	1e-129
224092342	424	predicted protein [Populus trichocarpa]	0.981	0.978	0.585	1e-128
255551056	416	pentatricopeptide repeat-containing prot	0.966	0.983	0.559	1e-121
356554511	421	PREDICTED: pentatricopeptide repeat-cont	0.893	0.897	0.544	1e-111
357436533	428	Pentatricopeptide repeat-containing prot	0.860	0.850	0.516	7e-96
242042151	409	hypothetical protein SORBIDRAFT_01g04648	0.936	0.968	0.405	3e-77
357113964	413	PREDICTED: pentatricopeptide repeat-cont	0.893	0.915	0.424	1e-76
414864901	410	TPA: hypothetical protein ZEAMMB73_84309	0.912	0.941	0.394	2e-73
125542489	409	hypothetical protein OsI_10104 [Oryza sa	0.940	0.973	0.389	2e-73

>gi|359476047|ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Vitis vinifera] gi|296081891|emb|CBI20896.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/425 (57%), Positives = 306/425 (72%), Gaps = 9/425 (2%)

Query: 1   MALACRVLSVAKSS---RYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKT 57
           M    RVLSVAK     R +L+P R  RL C+          SNPL+ +LLQ  +S+IKT
Sbjct: 1   MGFVLRVLSVAKRGLRPRLVLIPCRSQRLFCDKPL------VSNPLLIKLLQESISRIKT 54

Query: 58  TLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL 117
            LDS D F F SS FSWD L+T+L+SSSP KA LVLEWRL+KM++ NE  L  Y  LI L
Sbjct: 55  VLDSEDNFTFKSSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFL 114

Query: 118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP 177
             KVQNVPFAM VF SMEA GIK  S+VFN+LI  CL SG+V+TALSLFEIM SSE  KP
Sbjct: 115 CSKVQNVPFAMRVFNSMEAHGIKLTSSVFNALIYTCLSSGNVMTALSLFEIMQSSENCKP 174

Query: 178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY 237
           NS+TY+ FIS +S+LGN  AM  WY A   AGFS +++TYESLI G +++R+FD  DRFY
Sbjct: 175 NSETYNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLRTYESLISGCVRSRNFDCADRFY 234

Query: 238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL 297
           EEMM  GI+P+  ILE +L GLC +R + +V+  LKF++ G W+IN +MA+KL+  Y E 
Sbjct: 235 EEMMLSGIMPNGQILENILRGLCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEH 294

Query: 298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA 357
           G V+++EE L  L   NQS  VL     GIIR++A+ DRLDD+EYSVGRM KQG+SF+  
Sbjct: 295 GTVEKMEELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCP 354

Query: 358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
           +D+E V+C+YFR  AY+RLDLFL HIKGSYKL ++TYD LVAGYRRAGLS KLD V++ M
Sbjct: 355 DDIEKVVCAYFRREAYERLDLFLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGM 414

Query: 418 KFAEY 422
           K A +
Sbjct: 415 KLAGF 419

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812171|emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/404 (58%), Positives = 294/404 (72%), Gaps = 6/404 (1%)

Query: 19   MPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALI 78
            +P R  RL C+          SNPL+ +LLQ  +S+IKT LDS D F F SS FSWD L+
Sbjct: 933  IPQRSQRLFCDKPL------VSNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILL 986

Query: 79   TSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG 138
            T+L+SSSP KA LVLEWRL+KM++ NE  L  Y  LI L  KVQNVPFAM VF SMEA G
Sbjct: 987  TTLKSSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSMEAHG 1046

Query: 139  IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM 198
            IK  S+VFN+LIC CL SG+V+TALSLFEIM SSE  KPNS+TY+ FIS +S+LGN  AM
Sbjct: 1047 IKLTSSVFNALICTCLSSGNVMTALSLFEIMQSSENCKPNSETYNTFISVYSNLGNDKAM 1106

Query: 199  NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG 258
              WY A   AGFS +++TYESLI G  ++R+FD  DRFYEEMM  GI+P   ILE +L G
Sbjct: 1107 QAWYLAXKGAGFSADLRTYESLISGCXRSRNFDCADRFYEEMMLSGIMPBGQILENILRG 1166

Query: 259  LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE 318
            LC +R + +V+  LKF++ G W+IN +MA+KL+  Y E G V+++EE L  L   NQS  
Sbjct: 1167 LCEQRSISKVEQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFA 1226

Query: 319  VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDL 378
            VL     GIIR++A+ DRLDD+EYSVGRM KQG+SF+  +D+E V+C+YFR  AY+RLDL
Sbjct: 1227 VLQQVHCGIIRMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDL 1286

Query: 379  FLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
            FL HIKGSYKL ++TYD LVAGYRRAGLS KLD V++ MK A +
Sbjct: 1287 FLGHIKGSYKLTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAGF 1330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092342|ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/427 (58%), Positives = 307/427 (71%), Gaps = 12/427 (2%)

Query: 1   MALACR-VLSVAK-SSRY-----LLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVS 53
           MAL  R V S+AK  SR      LL P+ F         + ++ SSS+PL+S+LLQ P S
Sbjct: 1   MALVLRGVPSLAKRGSRIPQIIQLLFPIPF-----QAQHSFSTASSSDPLLSKLLQTPTS 55

Query: 54  QIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC 113
           +I  TLDS   F   SSQ SWD LIT+L+SSSP+KA LVLEWRL +ML  NE   DEY+ 
Sbjct: 56  KIIITLDSDHSFNLKSSQLSWDPLITNLRSSSPEKAHLVLEWRLGRMLDDNEIDHDEYSS 115

Query: 114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE 173
           LI+L GK+QNV  AMHVF SMEA+GIKP ++VFNSL+ ACL S +V+TALSLFEIM +SE
Sbjct: 116 LISLCGKIQNVSLAMHVFASMEARGIKPTTSVFNSLLYACLLSSNVITALSLFEIMENSE 175

Query: 174 EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV 233
            YKPNS+TYD F++GFS+L +V+ M  W+    AAGFS ++Q YE LI G +KARDFD+ 
Sbjct: 176 SYKPNSETYDKFVAGFSNLRDVNKMQAWFVGKRAAGFSASLQNYECLISGCVKARDFDTA 235

Query: 234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC 293
           DR YEEMMSLGI+PS+ I+E VLEG C R   D+VK FL FLL   ++IN NM + +V+ 
Sbjct: 236 DRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSCDKVKEFLNFLLECKFEINGNMIENVVRL 295

Query: 294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS 353
           Y ELG+VDE+E  LE L + NQ  E LL    GIIR YA+ D+LDDVE+SVGRM  QG+S
Sbjct: 296 YSELGKVDEMEMLLEMLMEFNQVGEALLQLHCGIIRFYAMLDKLDDVEFSVGRMMSQGMS 355

Query: 354 FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV 413
           FKS  DVE VI SYFR  AY+RLDLFL+HIK  YKL R+TYD LVAGYRR GL  KL+ +
Sbjct: 356 FKSPSDVEKVISSYFRQEAYERLDLFLEHIKSYYKLTRSTYDLLVAGYRRVGLMEKLNLL 415

Query: 414 INEMKFA 420
           + +MK A
Sbjct: 416 MEDMKLA 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551056|ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223544396|gb|EEF45917.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/422 (55%), Positives = 298/422 (70%), Gaps = 13/422 (3%)

Query: 2   ALACRVLSVAK-SSRYLLMPLRFDRLLCNTNTNSTSVSSSNPLISRLLQVPVSQIKTTLD 60
           A+  RVLSVAK  S+ L +  +       +    T  +SSNPL+S+LLQ+P S+IK+TLD
Sbjct: 6   AVVRRVLSVAKLQSQSLQIHFK-------SKQQYTITNSSNPLLSKLLQLPNSKIKSTLD 58

Query: 61  SVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK 120
           S      NSSQF +DAL+T+L SSSP+KA+LVLEWRLD MLK NE     Y+ LI+L  K
Sbjct: 59  S----DLNSSQFPFDALVTALASSSPEKARLVLEWRLDCMLKQNEIDHVHYSNLISLCAK 114

Query: 121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-GDVVTALSLFEIMVSSEEYKPNS 179
           + NV  AM VFTSME  GI P++ VFNSLI  CL S  +V+TALSLFEIM  SE  KP+S
Sbjct: 115 IHNVSLAMRVFTSMEGNGIIPNTTVFNSLIQVCLSSISNVLTALSLFEIMDISEFCKPDS 174

Query: 180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE 239
           +TYD F+ GFS+L +V  M  W+AA  AAG++ NVQ YE LI   +K +D D  DR ++E
Sbjct: 175 QTYDTFVLGFSNLRDVVKMQAWFAAKKAAGYTANVQNYECLISTCVKTKDLDKADRLFDE 234

Query: 240 MMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR 299
           MMS+G++PS  ILE VLEGLC RR  DRV+ FL FLL   ++ N NM +K+V+ Y ELG+
Sbjct: 235 MMSMGVMPSAAILEWVLEGLCKRRDCDRVRGFLNFLLECRFEFNGNMIEKIVELYSELGK 294

Query: 300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED 359
           VDE+E+ L+   + NQ  E L     GIIR YA +DRLDDVEYSVGRM   G+ F+S +D
Sbjct: 295 VDEMEKLLDICAEFNQVGETLSRLHCGIIRFYAKADRLDDVEYSVGRMTSSGMLFRSPDD 354

Query: 360 VEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF 419
           VE VI SYFR  AYDRLDLFL+H+KG +KL R+TYD LVAGYRRAGL+ KL+ V+ +MK 
Sbjct: 355 VEKVISSYFRKEAYDRLDLFLEHVKGYHKLTRSTYDLLVAGYRRAGLAEKLELVMLDMKL 414

Query: 420 AE 421
           A+
Sbjct: 415 AD 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554511|ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/380 (54%), Positives = 270/380 (71%), Gaps = 2/380 (0%)

Query: 42  PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKML 101
           PL+ +LLQVP S IKTTLD  ++ +  SSQ SWD LITSL  SS  KA+L+LEW L+KML
Sbjct: 40  PLLLKLLQVPNSHIKTTLDQ-EMASLQSSQRSWDFLITSLSPSSSDKARLILEWILEKML 98

Query: 102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT 161
           K NE   D ++ LI L GKV++V   M VF+SMEA G+KP+S VFNSLI  CL S D+VT
Sbjct: 99  KENEKDRDLFSELIFLCGKVKDVMLGMRVFSSMEATGVKPNSLVFNSLISVCLSSHDIVT 158

Query: 162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI 221
           A+SLFEIM SSE YKP+  TY+ FIS FS  GNVDAM  WY+A  AA    ++Q +ESLI
Sbjct: 159 AVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAARLGPDLQMFESLI 218

Query: 222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK 281
            G + +R F   DR +EEMM  GI+PS  I+E +L G+C +++L R + F  F +  GW+
Sbjct: 219 SGCVNSRKFKIADRIFEEMMISGIVPSASIIESMLNGICKQKRLGRAEEFFTFAMDSGWE 278

Query: 282 INENMAQKLVKCYCELGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLYALSDRLDDV 340
           INENM  KLV  Y +LG+ +E+E  L+T+ K C  +  VL     GI+++YA+ DRLDD+
Sbjct: 279 INENMVDKLVAMYLQLGKAEEMEGLLKTMMKPCVTTTGVLTRIHCGIVKMYAMVDRLDDI 338

Query: 341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG 400
           E++VGRM KQGLSF SA+DVE VICSYFR  AYDRLD+FL+ +K  Y L ++TYD L++G
Sbjct: 339 EFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDIFLECLKRCYVLNKSTYDLLISG 398

Query: 401 YRRAGLSGKLDSVINEMKFA 420
           Y+RA L  K++ V+ +MK A
Sbjct: 399 YKRARLLEKVERVMEDMKSA 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436533|ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477590|gb|AES58793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 189/366 (51%), Positives = 250/366 (68%), Gaps = 2/366 (0%)

Query: 53  SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA 112
           S IK TLD  +  +  +S  S+D LITSL  SS +K  LVLEW L+K+LK N      ++
Sbjct: 49  SHIKPTLDH-EFPSLPTSLLSFDFLITSLSPSS-QKPNLVLEWILEKLLKENVKDHGRFS 106

Query: 113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
            LI L GK++NV   ++VFTSME  G+KP S VFNSLI ACL S D+VTA SLFEIM SS
Sbjct: 107 ELIFLCGKLKNVQLGINVFTSMEGVGVKPTSLVFNSLISACLSSHDIVTAYSLFEIMESS 166

Query: 173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS 232
           E YKP+  TY+ FIS FS  GNVDAM  WY+A  A G   ++QT+ES+I G + +++++ 
Sbjct: 167 ENYKPDFHTYNNFISAFSKSGNVDAMLAWYSAKKATGLGPDLQTFESVISGCVNSKNYEI 226

Query: 233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK 292
            DR +EEM    +IP++ ILE +L+G C+++ L R   F KF+L   W+I+E MA  LV 
Sbjct: 227 ADRVFEEMKISEMIPNVTILESMLKGFCSQKSLCRANEFFKFVLDNRWQISETMAAMLVV 286

Query: 293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL 352
            Y E G+V+++EE LET+T       VL     GI+ +YA+ DRLD+VE SVGRM KQG+
Sbjct: 287 LYHEQGQVEKMEELLETITSYPIDSGVLSQIHCGIVTMYAMLDRLDEVELSVGRMLKQGM 346

Query: 353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDS 412
           SF S++DVE VICSYFR  AYDRLD+FL+ IK  Y   R+TYD L++GYRRA L  K+D 
Sbjct: 347 SFTSSDDVEKVICSYFRKEAYDRLDIFLECIKNCYVHTRSTYDLLISGYRRANLHEKVDL 406

Query: 413 VINEMK 418
           V+ +M+
Sbjct: 407 VLADME 412

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042151|ref|XP_002468470.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor] gi|241922324|gb|EER95468.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor]

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 246/402 (61%), Gaps = 6/402 (1%)

Query: 25  RLLCNTNTNSTSVSSSNP--LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL- 81
           RL     T + +V+S     L++RL+  P  ++K T++       +     W+ L  +L 
Sbjct: 9   RLWRGLGTAAAAVASGTDGNLLARLVSEPECRVKATMEEAASSGTHRDGAFWEPLAAALL 68

Query: 82  QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP 141
           ++SSP KA L+LEW L+K+LK N    + Y+ +I   G+ +N   AM VF  +EA+GI+ 
Sbjct: 69  RASSPTKAHLILEWELEKLLKENIQDCEPYSRIIRFCGQTRNATLAMRVFECVEAKGIQL 128

Query: 142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW 201
           ++ +FN+LI A L +GD+++A++L+E M   +   PNS TYDAFI  FS LG+  AM  W
Sbjct: 129 NTNIFNALINAFLSAGDLLSAMTLYESMEDMDGCNPNSATYDAFICAFSLLGSGHAMMSW 188

Query: 202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA 261
           Y A   AGF+ ++QT+ESLI G ++    D     +EEM++L I P+  ILE  LE L  
Sbjct: 189 YVAAKNAGFTPSIQTFESLITGFVQLNMLDDAKTIFEEMIALEIKPNSTILEASLEILYR 248

Query: 262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVL 320
           + +  RV+ FLK +  G W++N+ +  +L +   + G +DE+E+ L  + K    S E  
Sbjct: 249 KEEASRVRDFLKRVSDGNWELNKAIVVRLTRICLDGGEIDEMEQLLALIQKGPHLSSETQ 308

Query: 321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL 380
           LH   GIIR YA +D+L D+E+++ RM   G+ F   EDVE++ICSYFR   +DRLDLFL
Sbjct: 309 LH--HGIIRFYAKADQLADMEHAIYRMLDNGVVFMCPEDVEVIICSYFRHREFDRLDLFL 366

Query: 381 DHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
           + I+  +KL R+TYD LVAGYR+  L  +LDS I +M+ A +
Sbjct: 367 NRIRNLFKLNRSTYDILVAGYRKFDLHERLDSTIADMREAGF 408

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357113964|ref|XP_003558771.1| PREDICTED: pentatricopeptide repeat-containing protein At2g48000-like [Brachypodium distachyon]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/386 (42%), Positives = 239/386 (61%), Gaps = 8/386 (2%)

Query: 42  PLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKM 100
           PL++RL+  P  ++K T++     A +     W+ L  +L ++SS  KA LVLEW+L+K+
Sbjct: 30  PLLARLVAEPEFRVKATMEEASSSAPHRDAAFWEPLAAALLRASSLGKAHLVLEWKLEKL 89

Query: 101 LK---GNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG 157
           LK    N SC + Y+ +I   G+ +N   AM VF  +EAQGI+ ++ +FN+LI A L  G
Sbjct: 90  LKEGVHNHSC-EPYSTIIRFCGETRNAALAMRVFEGVEAQGIQLNTGIFNALINAFLSVG 148

Query: 158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY 217
           D++ A++L+E M   E+ KP+S TYDAFIS FS +G+ DAM  WY A   A F  ++QT+
Sbjct: 149 DLLAAVTLYETMEGMEDCKPDSATYDAFISAFSRIGSGDAMMSWYLAAKNAEFIPSIQTF 208

Query: 218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG 277
           ESLI G ++    D  +  +EEM+S  I P+  ILE  LE L   ++ +RVK F+K    
Sbjct: 209 ESLIVGLVRLNRLDDDEVVFEEMISFEIKPNFTILEAQLEVLSRTKEANRVKRFIKKFSD 268

Query: 278 GGWKINENMAQKLVKCYCELGRVDELEEQLETL-TKCNQSPEVLLHFFSGIIRLYALSDR 336
           G W++N+    +L +   +   VD++E+ L  + T  + S    LH  SGIIR YA +DR
Sbjct: 269 GNWELNKATVGRLTRLCLDGCEVDQMEQLLALIQTGVDLSSVTRLH--SGIIRFYASTDR 326

Query: 337 LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDF 396
           L D+E ++ RM   G++F   EDVE VICSYFR   +DRLD+FL+ I+  Y+L R+TYD 
Sbjct: 327 LPDMENAICRMFDDGMTFMCPEDVEAVICSYFRQKDFDRLDMFLNRIRSLYRLTRSTYDI 386

Query: 397 LVAGYRRAGLSGKLDSVINEMKFAEY 422
           LVAG+RR  L   LDS I +M+ A +
Sbjct: 387 LVAGFRRFDLHQPLDSTIKDMREAGF 412

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414864901|tpg|DAA43458.1| TPA: hypothetical protein ZEAMMB73_843092 [Zea mays]

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/390 (39%), Positives = 236/390 (60%), Gaps = 4/390 (1%)

Query: 30  TNTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKK 88
           T   + ++ +   L +RL+  P  ++K T++       +     W+  +T+L ++SSP K
Sbjct: 16  TAAAAAALGTDGNLFARLVSEPECRVKATMEEAASSGTHRDGAFWEPPVTALLRASSPTK 75

Query: 89  AQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS 148
           A L+LEW+L+K+LK +    + Y+ +I   G+ +N  FAM VF  +EA+GI+ ++ + N+
Sbjct: 76  AHLILEWKLEKLLKEDIQDCEPYSRIIRFCGQTRNATFAMRVFECVEAKGIQLNTNICNA 135

Query: 149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA 208
           L+ A L +GD+++A++L+E M S +   PNS TYDAFI  FS LG+  AM  WY A   A
Sbjct: 136 LVDAFLSAGDLLSAMTLYETMESMDACSPNSATYDAFICAFSLLGSGHAMMSWYVAAKNA 195

Query: 209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV 268
           GF+ ++Q +ESLI G ++    D     +EEM++L I P+  ILE  LE L  + +  RV
Sbjct: 196 GFTPSIQAFESLITGFVRLNMLDDAKTVFEEMIALEIKPNSTILEASLEILSRKEETSRV 255

Query: 269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGI 327
             FLK    G W++N+    +L +   + G +DE+E+ L  + K    + E  LH   GI
Sbjct: 256 GDFLKRARDGNWELNKATVVRLTRICLDGGVIDEMEQLLALIQKGTHLNSETQLH--HGI 313

Query: 328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY 387
           IR YA +DRL D+E ++ RM   G+ F   EDV+++IC YFR   +DRLDLFL+ I+  +
Sbjct: 314 IRFYANADRLADMEDAIYRMLDNGVMFTCPEDVDVIICCYFRHREFDRLDLFLNRIRSLF 373

Query: 388 KLRRATYDFLVAGYRRAGLSGKLDSVINEM 417
           KL R+TYD LVAGYR+  L  +LDS I +M
Sbjct: 374 KLNRSTYDILVAGYRKFDLHERLDSTIADM 403

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125542489|gb|EAY88628.1| hypothetical protein OsI_10104 [Oryza sativa Indica Group]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 244/403 (60%), Gaps = 5/403 (1%)

Query: 22  RFDRLLCNTNTNSTSVSS-SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS 80
           R  R L      S  V + ++ L++RL+  P  ++K T++     +  ++ F W+ L  +
Sbjct: 9   RLWRGLTTAAAASVGVEADTSALLARLVAEPEYRVKATMEEASGGSSAAAAF-WEPLAAA 67

Query: 81  L-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI 139
           L ++SSP KA LVLEW+L+K++K      + Y+ +I    + +N  FAM VF  +E  GI
Sbjct: 68  LLRASSPAKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFEFVEELGI 127

Query: 140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN 199
           + ++ +FN+LI A L  GD++ A++L+E M   E+ KPNS TYDAFIS FS LG+  AM 
Sbjct: 128 QLNTGIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRLGSGHAMM 187

Query: 200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL 259
            WY A+  AGF+ +++ +E L+ G +K    D  +  +EEM+   I P+  ILE  LE L
Sbjct: 188 SWYLASKDAGFTPSIKAFEYLVTGFVKLDRLDDAEVVFEEMICFEIKPNFAILEAKLELL 247

Query: 260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV 319
             R+  +RVK FL+ +  G  +++E   ++L++      ++ EL++ L  +   + S   
Sbjct: 248 SRRKDPNRVKVFLELVSDGNQELSEATVERLIRLCLYEDKIGELDQLLSLVQGMHTSSLT 307

Query: 320 LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLF 379
            LH   GIIR YA +DRL D+E+++ +M   G+ F  +EDVE VICSYFR   +DRLDLF
Sbjct: 308 KLH--CGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFDRLDLF 365

Query: 380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
           L+ I+  YKL R+TYD L++GY+R  L G+LD  I +M+ A +
Sbjct: 366 LNRIRSLYKLTRSTYDILISGYQRLNLHGRLDLAIKDMREAGF 408

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2054462	452	AT2G30780 "AT2G30780" [Arabido	0.775	0.725	0.231	5.8e-17
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.744	0.500	0.244	1.4e-15
TAIR|locus:2034528	840	AT1G31840 [Arabidopsis thalian	0.621	0.313	0.261	6.5e-15
TAIR|locus:2027382	657	AT1G11710 "AT1G11710" [Arabido	0.690	0.444	0.238	7.2e-15
TAIR|locus:2099458	659	AT3G48810 "AT3G48810" [Arabido	0.661	0.424	0.224	7.3e-15
TAIR|locus:2031301	577	AT1G63400 [Arabidopsis thalian	0.475	0.348	0.271	3.5e-14
TAIR|locus:2130549	702	SVR7 "suppressor of variegatio	0.548	0.330	0.271	3.8e-14
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.744	0.5	0.241	4.1e-14
TAIR|locus:2015218	590	AT1G63070 [Arabidopsis thalian	0.479	0.344	0.263	1e-13
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.761	0.351	0.248	1.3e-13

TAIR|locus:2054462 AT2G30780 "AT2G30780" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.8e-17, P = 5.8e-17
 Identities = 77/333 (23%), Positives = 147/333 (44%)

Query:    92 VLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC 151
             VLEWR  +         +EYA  I ++G+ +++  A+++F     + ++  S V+NSL+ 
Sbjct:    88 VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTAS-VYNSLMS 146

Query:   152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS 211
               + +G      SLF+         P   TY+  +S +  L  V  M   +         
Sbjct:   147 VYMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLP 206

Query:   212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF 271
              N  TY  LI G + A ++D ++  ++EM    + P     + +L G      L+R++  
Sbjct:   207 PNSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEM 266

Query:   272 LKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL 330
              + ++     +N   + + ++  YC+   V++  +++E L       E L      +IRL
Sbjct:   267 YE-VIKDQVGVNSGPLVRAMICAYCKKA-VEDRVQKIENLLSLLSGEEYLPWLNVLLIRL 324

Query:   331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGS-YKL 389
             YA  D ++ +E  +    +Q      +  +  +I +YFRC   D L  F+   + + +KL
Sbjct:   325 YAQEDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKL 384

Query:   390 RRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY 422
              R+ Y   +  Y       +++ V+NEM    Y
Sbjct:   385 CRSLYHCKIMMYGSQKRFEEMEGVVNEMAETNY 417

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 80/327 (24%), Positives = 139/327 (42%)

Query:    97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
             L KM KG  E+ +  Y  +I      +NV  A+++FT M+ +GI+P+   +NSLI  CLC
Sbjct:   243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 301

Query:   156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
             + G    A  L   M+   +  PN  T+ A I  F   G +    K Y   I      ++
Sbjct:   302 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query:   215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
              TY SLI+G       D     +E M+S    P++     +++G C  ++++      + 
Sbjct:   361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query:   275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
             +   G   N      L++   + G  D  ++  + +      P+++ +     G+ +   
Sbjct:   421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480

Query:   333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLD-HIKGSYKLRR 391
             L   L   EY   +  K      +   +   +C   +    D  DLF    +KG  K   
Sbjct:   481 LEKALVVFEYL--QKSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKG-VKPNV 535

Query:   392 ATYDFLVAGYRRAGLSGKLDSVINEMK 418
               Y  +++G+ R GL  + D++  EMK
Sbjct:   536 IIYTTMISGFCRKGLKEEADALFREMK 562

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2034528 AT1G31840 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 70/268 (26%), Positives = 122/268 (45%)

Query:    87 KKAQLVLEWRLDKML--KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA 144
             K+ ++   + L K++  +G E  L  Y+ LI    K   +     +F+    +G+K D  
Sbjct:   298 KRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVV 357

Query:   145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
             VF+S I   + SGD+ TA  +++ M+  +   PN  TY   I G    G +      Y  
Sbjct:   358 VFSSTIDVYVKSGDLATASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQ 416

Query:   205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK 264
              +  G   ++ TY SLI G  K  +  S    YE+M+ +G  P + I   +++GL  +  
Sbjct:   417 ILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGL 476

Query:   265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF 324
             +     F   +LG   ++N  +   L+  +C L R DE  +    +      P+V    F
Sbjct:   477 MLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT--F 534

Query:   325 SGIIRLYALSDRLDDVEYSVGRMGKQGL 352
             + ++R+  +  RL++  +   RM K GL
Sbjct:   535 TTVMRVSIMEGRLEEALFLFFRMFKMGL 562

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2027382 AT1G11710 "AT1G11710" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 71/298 (23%), Positives = 134/298 (44%)

Query:   127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIM--VSSEEYKPNSKTYDA 184
             A+ VF  M   G+ P+   FN +I     +GD+  AL L   M  +S     PN+ TY++
Sbjct:   237 ALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNS 296

Query:   185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG 244
              I+GF   G +D   +     + +G   N +TY +L+    +A   D   R  +EM S G
Sbjct:   297 VINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKG 356

Query:   245 IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE 304
             ++ +  I   ++  L     ++   S L+ +     +I+      +V+  C  G V E  
Sbjct:   357 LVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAV 416

Query:   305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI 364
             E    +++     +++ H  + ++  +    +L   +  +G M  QGLS   A     +I
Sbjct:   417 EFQRQISEKKLVEDIVCH--NTLMHHFVRDKKLACADQILGSMLVQGLSL-DAISFGTLI 473

Query:   365 CSYFRCAAYDR-LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE 421
               Y +    +R L+++   IK +       Y+ +V G  + G++G  ++V+N M+  +
Sbjct:   474 DGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVNAMEIKD 531

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 64/285 (22%), Positives = 126/285 (44%)

Query:    74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS 133
             ++ALI  L      K     E   + + KG    +  Y+ LI +      +  A    T 
Sbjct:   249 YNALINGLCKEHDYKG--AFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQ 306

Query:   134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
             M  +G  P+    +SL+  C   G    AL L+  M+     +PN   Y+  + GF S G
Sbjct:   307 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 366

Query:   194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE 253
             N+      ++     G S N++TY SLI+G  K    D     + +M++ G  P++ +  
Sbjct:   367 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426

Query:   254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC 313
              ++E LC   K    +S ++ +       +       +K  C+ GR+D  E+    + + 
Sbjct:   427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486

Query:   314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR-MGKQGLSFKSA 357
             ++ P  ++ + + ++   A ++R+++  Y + R +  +G+ + S+
Sbjct:   487 HRCPPNIVTY-NELLDGLAKANRIEEA-YGLTREIFMRGVEWSSS 529

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 56/206 (27%), Positives = 102/206 (49%)

Query:   127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT-ALSLFEIMVSSEEYKPNSKTYDAF 185
             A  ++  M  + I PD   ++SLI    C  D +  A  +FE+M+S + + PN  TY+  
Sbjct:   349 AEKLYDEMIKRSIDPDIFTYSSLING-FCMHDRLDEAKHMFELMISKDCF-PNVVTYNTL 406

Query:   186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI 245
             I+GF     +D   + +      G   N  TY +LIHG  +ARD D+    +++M+S G+
Sbjct:   407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query:   246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE 305
              P+I     +L+GLC   KL++     ++L     +        +++  C+ G+V++  +
Sbjct:   467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query:   306 QLETLTKCNQSPEVLLH--FFSGIIR 329
                +L+     P+V+++    SG  R
Sbjct:   527 LFCSLSLKGVKPDVIIYNTMISGFCR 552

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130549 SVR7 "suppressor of variegation 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 64/236 (27%), Positives = 112/236 (47%)

Query:    60 DSVDIFA-FNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALS 118
             D  D+   F    F  DA++T    ++P+ A LVL   L+ M    E  L  Y   + + 
Sbjct:   128 DVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVIL--YNVTMKVF 185

Query:   119 GKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN 178
              K +++  +  +F  M  +GIKPD+A F ++I     +G    A+  FE M SS   +P+
Sbjct:   186 RKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM-SSFGCEPD 244

Query:   179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE 238
             + T  A I  +   GNVD     Y       + ++  T+ +LI     + ++D     YE
Sbjct:   245 NVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYE 304

Query:   239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY 294
             EM +LG+ P++ I  ++++ +   ++  + K   K L+  G+  N +    LV+ Y
Sbjct:   305 EMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAY 360

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0031425 "chloroplast RNA processing" evidence=IMP

GO:0045727 "positive regulation of translation" evidence=IMP

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 4.1e-14, P = 4.1e-14
 Identities = 79/327 (24%), Positives = 136/327 (41%)

Query:    97 LDKMLKGN-ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC 155
             L KM +G  E  +  Y  +I      +NV  A+++FT M+ +GI+P+   +NSLI  CLC
Sbjct:   244 LKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-RCLC 302

Query:   156 S-GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV 214
             + G    A  L   M+   +  PN  T+ A I  F   G +    K Y   I      ++
Sbjct:   303 NYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361

Query:   215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF 274
              TY SLI+G       D     +E M+S    P++     +++G C  +++D      + 
Sbjct:   362 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421

Query:   275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGIIRLYA 332
             +   G   N      L+  + +    D  +   + +      P+++ +     G+     
Sbjct:   422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK 481

Query:   333 LSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLD-HIKGSYKLRR 391
             +   L   EY   +  K      +   +   +C   +    D  DLF    +KG  K   
Sbjct:   482 VETALVVFEYL--QRSKMEPDIYTYNIMIEGMCKAGKVE--DGWDLFCSLSLKG-VKPNV 536

Query:   392 ATYDFLVAGYRRAGLSGKLDSVINEMK 418
              TY  +++G+ R GL  + D++  EMK
Sbjct:   537 VTYTTMMSGFCRKGLKEEADALFREMK 563

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 54/205 (26%), Positives = 97/205 (47%)

Query:   127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI 186
             A  + + M  + I PD   FN+LI A +  G +V A  L++ MV S+   P+   Y+  I
Sbjct:   304 ASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLI 363

Query:   187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII 246
              GF     V+   + +      G   N  TY +LIHG  +ARD D+    +++M+S G+ 
Sbjct:   364 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 423

Query:   247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
             P I     +L+GLC    ++      +++     K++      +++  C+ G+V++  + 
Sbjct:   424 PDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDL 483

Query:   307 LETLTKCNQSPEVLLH--FFSGIIR 329
               +L+     P V+ +    SG  R
Sbjct:   484 FCSLSLKGVKPNVVTYTTMMSGFCR 508

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 84/338 (24%), Positives = 139/338 (41%)

Query:    73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI-ALSGKVQNVPFAMHVF 131
             ++  LI SL  S  K   L L   +++   G +  +  Y  LI +L  + +    A  + 
Sbjct:   325 TYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVLIDSLCSQCK-FEKARELL 381

Query:   132 TSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS 191
               M  +G+ P+   +N+LI      G +  A+ + E+M  S +  PN++TY+  I G+  
Sbjct:   382 GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM-ESRKLSPNTRTYNELIKGYCK 440

Query:   192 LGNVDAM---NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS 248
                  AM   NK     +      +V TY SLI G  ++ +FDS  R    M   G++P 
Sbjct:   441 SNVHKAMGVLNKMLERKVLP----DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496

Query:   249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE 308
                   +++ LC  ++++        L   G   N  M   L+  YC+ G+VDE    LE
Sbjct:   497 QWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLE 556

Query:   309 TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF 368
              +   N  P  L   F+ +I       +L +      +M K GL    + D  ++I    
Sbjct:   557 KMLSKNCLPNSLT--FNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDT-ILIHRLL 613

Query:   369 RCAAYDRL-DLFLDHIKGSYKLRRATYDFLVAGYRRAG 405
             +   +D     F   +    K    TY   +  Y R G
Sbjct:   614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREG 651

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032475001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (420 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 109 DE--YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF 166
           DE  ++ L+ ++G   ++  A  +      QGIK  +  ++SL+ AC  + +   AL L+
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707

Query: 167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK 226
           E + S  + +P   T +A I+       +    +  +     G   N  TY  L+  S +
Sbjct: 708 EDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766

Query: 227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR 263
             D D       +    GI P+  ++ + + GLC RR
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCLRR 802

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF 189
           PD   +N+LI      G V  AL LF  M      KPN  TY   I G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 3/174 (1%)

Query: 77  LITSLQSSSPK--KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSM 134
           L T+L S+  K  K   + E   + +  G E+ +  +  LI    +   V  A   +  M
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533

Query: 135 EAQGIKPDSAVFNSLICACLCSGDVVTALS-LFEIMVSSEEYKPNSKTYDAFISGFSSLG 193
            ++ +KPD  VFN+LI AC  SG V  A   L E+   +    P+  T  A +   ++ G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593

Query: 194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
            VD   + Y            + Y   ++   +  D+D     Y++M   G+ P
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 115 IALSGKVQ--NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS 172
           I L+G V       A+ +F  M   G+ PD   F SL+CAC  SG V   L  F  M   
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618

Query: 173 EEYKPNSKTY 182
               PN K Y
Sbjct: 619 YSITPNLKHY 628

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK 200
           P  + FN L+  C  S D+  AL +   +V     K + K Y   IS  +  G VDAM +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493

Query: 201 WYAANIAAGFSVNVQTYESLIHGSLKA 227
            +   + AG   NV T+ +LI G  +A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARA 520

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTAL 163
               L  +  L+++    Q++  A+ V   ++  G+K D  ++ +LI  C  SG V    
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492

Query: 164 SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV 195
            +F  MV++   + N  T+ A I G +  G V
Sbjct: 493 EVFHEMVNA-GVEANVHTFGALIDGCARAGQV 523

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV 170
              L+        V  A  V+  +    IK    V+   + +C   GD   ALS+++ M 
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM- 640

Query: 171 SSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF 230
             +  KP+   + A +      G++D   +        G  +   +Y SL+     A+++
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700

Query: 231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL 272
                 YE++ S+ + P++  +  ++  LC   +L +    L
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY 182
           +  FA+ ++  M+ +G+KPD   F++L+     +GD+  A  + +     +  K  + +Y
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSY 687

Query: 183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS 242
            + +   S+  N     + Y    +      V T  +LI    +            EM  
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747

Query: 243 LGIIPSI 249
           LG+ P+ 
Sbjct: 748 LGLCPNT 754

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG 223
           P+  TY+  I G+   G V+   K +      G   NV TY  LI G
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
           ++TY +L+    KA D D      EEM + G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI 249
           TY +LI G  KA   +     ++EM   GI P +
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.79
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.71
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.65
PRK14574	822	hmsH outer membrane protein; Provisional	99.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.57
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.55
KOG2076	895	consensus RNA polymerase III transcription factor	99.54
KOG2076	895	consensus RNA polymerase III transcription factor	99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
PF13041	50	PPR_2: PPR repeat family	99.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.47
KOG1126	638	consensus DNA-binding cell division cycle control	99.46
PRK12370	553	invasion protein regulator; Provisional	99.45
KOG2003	840	consensus TPR repeat-containing protein [General f	99.45
PF13041	50	PPR_2: PPR repeat family	99.44
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
PRK12370	553	invasion protein regulator; Provisional	99.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.39
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.36
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
KOG1129	478	consensus TPR repeat-containing protein [General f	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.25
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.21
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.19
KOG2003	840	consensus TPR repeat-containing protein [General f	99.17
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.12
PRK11189	296	lipoprotein NlpI; Provisional	99.1
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
PRK11189	296	lipoprotein NlpI; Provisional	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.08
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.07
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.03
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.0
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.98
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.95
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.93
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.91
PF12854	34	PPR_1: PPR repeat	98.9
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.88
PF12854	34	PPR_1: PPR repeat	98.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.85
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.8
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.74
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.69
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.61
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.6
PRK04841	903	transcriptional regulator MalT; Provisional	98.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.59
PLN02789	320	farnesyltranstransferase	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.58
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.58
PLN02789	320	farnesyltranstransferase	98.58
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.58
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.56
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.55
KOG1125	579	consensus TPR repeat-containing protein [General f	98.54
PRK04841	903	transcriptional regulator MalT; Provisional	98.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.5
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.49
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.44
PRK15359	144	type III secretion system chaperone protein SscB;	98.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.41
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.4
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.36
PRK15359	144	type III secretion system chaperone protein SscB;	98.34
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.29
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.28
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.25
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.24
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.2
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.17
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.15
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	98.12
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.12
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.1
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.09
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.09
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.08
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.92
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.89
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.83
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.82
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.73
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.68
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.61
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.57
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.49
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.48
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.45
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.45
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.44
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.36
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.34
PF12688	120	TPR_5: Tetratrico peptide repeat	97.33
KOG0553	304	consensus TPR repeat-containing protein [General f	97.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.29
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.29
PF12688	120	TPR_5: Tetratrico peptide repeat	97.24
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.24
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.12
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.11
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.0
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.96
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.93
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.91
KOG0553	304	consensus TPR repeat-containing protein [General f	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.82
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.81
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.79
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.7
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.7
PRK10803	263	tol-pal system protein YbgF; Provisional	96.67
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.64
PRK10803	263	tol-pal system protein YbgF; Provisional	96.64
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.45
KOG3941	406	consensus Intermediate in Toll signal transduction	96.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.35
PRK15331	165	chaperone protein SicA; Provisional	96.34
PF13371	73	TPR_9: Tetratricopeptide repeat	96.34
PF13371	73	TPR_9: Tetratricopeptide repeat	96.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.14
KOG3941	406	consensus Intermediate in Toll signal transduction	96.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.05
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.01
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.99
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.98
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.95
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.72
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.48
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.36
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.34
PF13512	142	TPR_18: Tetratricopeptide repeat	95.34
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.21
PRK15331	165	chaperone protein SicA; Provisional	95.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.14
PF13428	44	TPR_14: Tetratricopeptide repeat	95.13
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.05
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.99
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.97
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.73
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.62
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.41
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.35
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.95
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.88
KOG1586	288	consensus Protein required for fusion of vesicles	93.83
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.7
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.64
PRK11906	458	transcriptional regulator; Provisional	93.54
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.34
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.15
PF13512	142	TPR_18: Tetratricopeptide repeat	93.14
KOG4555	175	consensus TPR repeat-containing protein [Function	93.12
PF13428	44	TPR_14: Tetratricopeptide repeat	93.02
PF13929	292	mRNA_stabil: mRNA stabilisation	93.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.94
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.71
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.2
PF13929	292	mRNA_stabil: mRNA stabilisation	92.18
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.13
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.12
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.11
KOG4555	175	consensus TPR repeat-containing protein [Function	92.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.97
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.49
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.48
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.41
PRK11619	644	lytic murein transglycosylase; Provisional	91.02
PF13431	34	TPR_17: Tetratricopeptide repeat	90.98
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.59
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.41
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	90.27
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.8
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.14
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.94
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	88.04
PF13431	34	TPR_17: Tetratricopeptide repeat	88.0
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.53
COG3947	361	Response regulator containing CheY-like receiver a	87.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.96
PF13762	145	MNE1: Mitochondrial splicing apparatus component	86.94
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	86.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.54
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.46
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.14
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.09
PRK09687	280	putative lyase; Provisional	85.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.94
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.74
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.57
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.48
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.0
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.63
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	83.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.92
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	82.72
PHA02875	413	ankyrin repeat protein; Provisional	82.71
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.42
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.3
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.93
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	80.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	80.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.53
KOG1585	308	consensus Protein required for fusion of vesicles	80.42
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	80.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.09

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.6e-61  Score=478.47  Aligned_cols=383  Identities=19%  Similarity=0.212  Sum_probs=359.1

Q ss_pred             CCCccccHHHHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhH
Q 014502           34 STSVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDE  110 (423)
Q Consensus        34 ~~~~~~~~~ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~  110 (423)
                      .|+..+||.++..+++.+. ..+.++|+.|.+.|+.||..+||++|.+ ++.|+.++|.++    |++|.+.+. ||..+
T Consensus       434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v----f~eM~~~Gv~PdvvT  509 (1060)
T PLN03218        434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV----FHEMVNAGVEANVHT  509 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHcCCCCCHHH
Confidence            4899999999999999994 5669999999999999999999999999 799999999999    688888777 89999


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCCHHhHHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS-EEYKPNSKTYDAFISGF  189 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~  189 (423)
                      |+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|+++|.+|
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay  589 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC  589 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999752 57899999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK  269 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  269 (423)
                      ++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|++|++.|++++|.
T Consensus       590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+  |+.||.+|++.|++++|.++|++|.+
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt--yN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST--MNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988  99999999999999999999999999


Q ss_pred             CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----c-------------------C
Q 014502          350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----A-------------------G  405 (423)
Q Consensus       350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g  405 (423)
                      .|+.|+ ..+|+.++.+|++.|+.+ +.+++.+|.+.|+.||..+|++++..|.+    +                   +
T Consensus       748 ~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~  826 (1060)
T PLN03218        748 LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK  826 (1060)
T ss_pred             cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence            999776 999999999999999995 78899999999999999999999876542    1                   2


Q ss_pred             ChhHHHHHHHHHHhcCCC
Q 014502          406 LSGKLDSVINEMKFAEYM  423 (423)
Q Consensus       406 ~~~~a~~~~~~m~~~g~~  423 (423)
                      ..++|..+|++|.+.|+.
T Consensus       827 w~~~Al~lf~eM~~~Gi~  844 (1060)
T PLN03218        827 WTSWALMVYRETISAGTL  844 (1060)
T ss_pred             hHHHHHHHHHHHHHCCCC
Confidence            346799999999999974

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3e-60  Score=473.28  Aligned_cols=381  Identities=17%  Similarity=0.181  Sum_probs=352.7

Q ss_pred             CCccccHHHHHHHhcCC-chhHHHHHHHhhhccCC--------------------------------cChhhHHHHHHH-
Q 014502           35 TSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFN--------------------------------SSQFSWDALITS-   80 (423)
Q Consensus        35 ~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~--------------------------------p~~~~~~~li~~-   80 (423)
                      ++...|..++..+++.+ ..++.++|+.|.+.|+.                                ||..+|+.+|.+ 
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~  447 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC  447 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34445666666666666 34556666666665542                                788999999999 


Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV  159 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  159 (423)
                      ++.|++++|.++    +++|.+.+. ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus       448 ~k~g~~e~A~~l----f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        448 ASSQDIDGALRV----LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HhCcCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            799999999999    678888877 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA--AGFSVNVQTYESLIHGSLKARDFDSVDRFY  237 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  237 (423)
                      ++|.++|++|.+ .|+.||..||+.||.+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|
T Consensus       524 eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        524 AKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999998 89999999999999999999999999999999986  688999999999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502          238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP  317 (423)
Q Consensus       238 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  317 (423)
                      ++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHH
Q 014502          318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDF  396 (423)
Q Consensus       318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~  396 (423)
                      +..+  |+.+|.+|++.|++++|.++|++|.+.|+.|+ ..+|+.||.+|++.|+.+ +.+++.+|...|+.||..||+.
T Consensus       683 d~~t--ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s  759 (1060)
T PLN03218        683 GTVS--YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI  759 (1060)
T ss_pred             CHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9998  99999999999999999999999999998775 999999999999999994 7899999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502          397 LVAGYRRAGLSGKLDSVINEMKFAEYM  423 (423)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~m~~~g~~  423 (423)
                      ++.+|.+.|++++|.+++++|.+.|+.
T Consensus       760 LL~a~~k~G~le~A~~l~~~M~k~Gi~  786 (1060)
T PLN03218        760 LLVASERKDDADVGLDLLSQAKEDGIK  786 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999873

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.2e-55  Score=436.77  Aligned_cols=367  Identities=15%  Similarity=0.186  Sum_probs=289.7

Q ss_pred             CCCCccccHHHHHHHhcCCch-hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhH
Q 014502           33 NSTSVSSSNPLISRLLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDE  110 (423)
Q Consensus        33 ~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~  110 (423)
                      ..|+..+|+.++..+++.+.. .+.+++..|.+.|+.||..+||.+|.. ++.|++++|.++    |++|.   .||..+
T Consensus       119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l----f~~m~---~~~~~t  191 (697)
T PLN03081        119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL----FDEMP---ERNLAS  191 (697)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH----HhcCC---CCCeee
Confidence            345555666666666555533 335556666666666666666666666 455666666666    44443   256666


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS  190 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  190 (423)
                      |+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+ .|+.||..+|++||.+|+
T Consensus       192 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~-~g~~~d~~~~n~Li~~y~  270 (697)
T PLN03081        192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFVSCALIDMYS  270 (697)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH-hCCCccceeHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666 667777778888889999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502          191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS  270 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  270 (423)
                      +.|++++|.++|++|.    .+|..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus       271 k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~  346 (697)
T PLN03081        271 KCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ  346 (697)
T ss_pred             HCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence            9999999999999886    568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       271 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      ++++|.+.|+.||..+|++|+++|+++|++++|.++|++|.+    |+..+  ||.||.+|++.|+.++|.++|++|.+.
T Consensus       347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t--~n~lI~~y~~~G~~~~A~~lf~~M~~~  420 (697)
T PLN03081        347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS--WNALIAGYGNHGRGTKAVEMFERMIAE  420 (697)
T ss_pred             HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999865    66666  999999999999999999999999999


Q ss_pred             CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh-CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          351 GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK-GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      |+.|+ ..+|+.++.+|++.|..+ +.++|.+|.+ .|+.|+..+|++++++|++.|++++|.+++++|.
T Consensus       421 g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~  489 (697)
T PLN03081        421 GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP  489 (697)
T ss_pred             CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence            98776 889999999999999995 6777878875 5889999999999999999999999999988874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.5e-54  Score=429.08  Aligned_cols=373  Identities=14%  Similarity=0.160  Sum_probs=317.8

Q ss_pred             CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHH------------
Q 014502           31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWR------------   96 (423)
Q Consensus        31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~------------   96 (423)
                      .++.|+..+||.++..+++.+ ...+.++|++|.    .||..+||++|.+ ++.|++++|.++|+.+            
T Consensus       152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~  227 (697)
T PLN03081        152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF  227 (697)
T ss_pred             hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence            456677777777777777776 344577777764    4677777777777 5677777777773221            


Q ss_pred             -------------------HHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 014502           97 -------------------LDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS  156 (423)
Q Consensus        97 -------------------~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  156 (423)
                                         +..+.+.+. ||..+|+.|+++|++.|++++|.++|++|.+    +|..+||++|.+|++.
T Consensus       228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~  303 (697)
T PLN03081        228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALH  303 (697)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhC
Confidence                               122223333 6777788899999999999999999999975    5899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRF  236 (423)
Q Consensus       157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  236 (423)
                      |++++|+++|++|.+ .|+.||..||++++.+|++.|++++|.+++++|.+.|+.||..+|++||++|++.|++++|.++
T Consensus       304 g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v  382 (697)
T PLN03081        304 GYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV  382 (697)
T ss_pred             CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence            999999999999998 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC
Q 014502          237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK-CNQ  315 (423)
Q Consensus       237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~  315 (423)
                      |++|.    .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+
T Consensus       383 f~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~  458 (697)
T PLN03081        383 FDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI  458 (697)
T ss_pred             HHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence            99996    4788999999999999999999999999999999999999999999999999999999999999976 689


Q ss_pred             CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcc-cHHHH
Q 014502          316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKL-RRATY  394 (423)
Q Consensus       316 ~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~  394 (423)
                      .|+..+  |+.++++|++.|++++|.+++++|   ++.|+ ..+|+.|+.+|...|+.+.++.+.+.+. +..| +..+|
T Consensus       459 ~p~~~~--y~~li~~l~r~G~~~eA~~~~~~~---~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y  531 (697)
T PLN03081        459 KPRAMH--YACMIELLGREGLLDEAYAMIRRA---PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNY  531 (697)
T ss_pred             CCCccc--hHhHHHHHHhcCCHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcch
Confidence            999888  999999999999999999999876   35554 8899999999999999976554444443 3345 47799


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 014502          395 DFLVAGYRRAGLSGKLDSVINEMKFAEYM  423 (423)
Q Consensus       395 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  423 (423)
                      ..|+..|++.|++++|.+++++|+++|+.
T Consensus       532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        532 VVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999973

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.4e-54  Score=435.34  Aligned_cols=374  Identities=17%  Similarity=0.189  Sum_probs=273.1

Q ss_pred             CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHH----------------------------------
Q 014502           31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWD----------------------------------   75 (423)
Q Consensus        31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~----------------------------------   75 (423)
                      ....|++.+||.++..+++.+ ..++.++|++|...|+.||..||+                                  
T Consensus       146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  225 (857)
T PLN03077        146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV  225 (857)
T ss_pred             cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence            344567777777777777777 345577777777667766666654                                  


Q ss_pred             -HHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502           76 -ALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC  153 (423)
Q Consensus        76 -~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  153 (423)
                       ++|.+ ++.|++++|.++    |++|.   .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|
T Consensus       226 n~Li~~y~k~g~~~~A~~l----f~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        226 NALITMYVKCGDVVSARLV----FDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHH----HhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence             44555 456677777777    55554   3677888888888888888888888888888888888888888888888


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                      ++.|+.+.|.+++..|.+ .|+.||..+|++||.+|++.|++++|.++|++|.    .||..+||++|.+|++.|++++|
T Consensus       299 ~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A  373 (857)
T PLN03077        299 ELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA  373 (857)
T ss_pred             HhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHH
Confidence            888888888888888887 7888888888888888888888888888888886    56888888888888888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      +++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.+.
T Consensus       374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~  453 (857)
T PLN03077        374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK  453 (857)
T ss_pred             HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            89999998888889999999999999999999999999999888888888888888888888888888888888877542


Q ss_pred             C------------------------------CCCchHH------------------------------------------
Q 014502          314 N------------------------------QSPEVLL------------------------------------------  321 (423)
Q Consensus       314 ~------------------------------~~p~~~~------------------------------------------  321 (423)
                      +                              +.|+..+                                          
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~  533 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL  533 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence            2                              1222211                                          


Q ss_pred             ---------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHH
Q 014502          322 ---------------------HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLF  379 (423)
Q Consensus       322 ---------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~  379 (423)
                                           .+||++|.+|++.|+.++|.++|++|.+.|+.|+ ..+|+.++.+|++.|..+ +.++|
T Consensus       534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f  612 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYF  612 (857)
T ss_pred             HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHH
Confidence                                 1155555555555555555666666655555543 555555556666555553 45555


Q ss_pred             HHHH-hCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          380 LDHI-KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       380 ~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      .+|. ..|+.|+..+|++++++|.+.|++++|.+++++|
T Consensus       613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            5555 3455556556666666666666666666665555

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.6e-54  Score=434.62  Aligned_cols=373  Identities=17%  Similarity=0.216  Sum_probs=310.1

Q ss_pred             CCCCCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CC
Q 014502           31 NTNSTSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SC  107 (423)
Q Consensus        31 ~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~  107 (423)
                      .+..+++..+|.+++.+++.+ ...++++|++|.    +||..+||++|.+ ++.|++++|.++    |++|...+. ||
T Consensus       115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~----f~~M~~~g~~Pd  186 (857)
T PLN03077        115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCL----YHRMLWAGVRPD  186 (857)
T ss_pred             cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCC
Confidence            445688889999999999999 456799999996    6899999999999 799999999999    566766554 66


Q ss_pred             HhHH-----------------------------------HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          108 LDEY-----------------------------------ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA  152 (423)
Q Consensus       108 ~~~~-----------------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  152 (423)
                      ..+|                                   +.|+.+|++.|+++.|.++|++|.+    ||..+||++|.+
T Consensus       187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~  262 (857)
T PLN03077        187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISG  262 (857)
T ss_pred             hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHH
Confidence            5555                                   5666667777777777777777763    477788888888


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS  232 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  232 (423)
                      |++.|++++|+++|++|.+ .|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++
T Consensus       263 ~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  341 (857)
T PLN03077        263 YFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE  341 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence            8888888888888888887 788888888888888888888888888888888888888888888888888999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      |.++|++|.    .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+
T Consensus       342 A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~  417 (857)
T PLN03077        342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER  417 (857)
T ss_pred             HHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            999998886    4788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------------------------------C---------
Q 014502          313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL------------------------------S---------  353 (423)
Q Consensus       313 ~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------------------~---------  353 (423)
                      .|..|+..+  |+.|+.+|++.|++++|.++|++|.+.+.                              .         
T Consensus       418 ~g~~~~~~~--~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~l  495 (857)
T PLN03077        418 KGLISYVVV--ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAA  495 (857)
T ss_pred             hCCCcchHH--HHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHH
Confidence            999888877  88888888888888888888877755321                              1         


Q ss_pred             -------------------------------------------------------CCChHhHHHHHHHHhhcccc-chHH
Q 014502          354 -------------------------------------------------------FKSAEDVEMVICSYFRCAAY-DRLD  377 (423)
Q Consensus       354 -------------------------------------------------------~~~~~~~~~l~~~~~~~~~~-~~~~  377 (423)
                                                                             .++..+||+||.+|++.|+. ++.+
T Consensus       496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~  575 (857)
T PLN03077        496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE  575 (857)
T ss_pred             HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH
Confidence                                                                   12345677777888888877 4678


Q ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCC
Q 014502          378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK-FAEY  422 (423)
Q Consensus       378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~  422 (423)
                      +|.+|...|+.||..||+.++.+|.+.|++++|.++|++|. +.|+
T Consensus       576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi  621 (857)
T PLN03077        576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI  621 (857)
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence            88888888888888888888888888888888888888887 4554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=3e-22  Score=206.49  Aligned_cols=321  Identities=13%  Similarity=0.063  Sum_probs=199.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      ...|++++|.+.    ++.+....+.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus       578 ~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  652 (899)
T TIGR02917       578 LGKGQLKKALAI----LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA  652 (899)
T ss_pred             HHCCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence            345555555555    334444444455555555555555555555555555555432 224445555555555555666


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      +|..+|+++.+.  .+.+..++..+...+...|++++|.++++.+.+.. ..+...+..+...+.+.|++++|.+.|+.+
T Consensus       653 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  729 (899)
T TIGR02917       653 KAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA  729 (899)
T ss_pred             HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            666655555541  12334555555556666666666666666655554 224555666666666666666666666666


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      ...+  |+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+..  |+..
T Consensus       730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~  804 (899)
T TIGR02917       730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNA  804 (899)
T ss_pred             HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCH
Confidence            5543  444555566666666777777777776666643 3456666667777777777777777777776643  3322


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHH
Q 014502          321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVA  399 (423)
Q Consensus       321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~  399 (423)
                      .. ++.+...+...|+ .+|+..+++..+  ..|+++..+..+...+...|+++ +.+.+.++++.+ +.++.++..+..
T Consensus       805 ~~-~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~  879 (899)
T TIGR02917       805 VV-LNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLAL  879 (899)
T ss_pred             HH-HHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Confidence            22 6677777777777 667777777766  34556777777777788888874 677777777654 337788888888


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 014502          400 GYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       400 ~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ++.+.|++++|.+++++|.+
T Consensus       880 ~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       880 ALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHhC
Confidence            88888888888888888753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=5.1e-21  Score=197.32  Aligned_cols=303  Identities=13%  Similarity=0.060  Sum_probs=175.1

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      .+...+..+...+.+.|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+.  .+.+...+..+
T Consensus       565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l  641 (899)
T TIGR02917       565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLL  641 (899)
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence            334444444444444444444444444444321 224445555555555555555555555555431  12233444455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ..++.+.|++++|.++|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~  719 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY  719 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence            555555555555555555555443 1234555555555555556666665555555543 33445555566666666666


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      ++|.+.++.+...+  |+..++..+..++.+.|++++|.+.++.+.+..  |+... .+..+...|...|++++|...|+
T Consensus       720 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~-~~~~la~~~~~~g~~~~A~~~~~  794 (899)
T TIGR02917       720 PAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAV-LRTALAELYLAQKDYDKAIKHYR  794 (899)
T ss_pred             HHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHHCcCHHHHHHHHH
Confidence            66666666666543  333555556666666677777766666666533  33222 26666777777777777777777


Q ss_pred             HHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502          346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  421 (423)
                      ++.+.  .|+++..++.+...+...|+.++...+.+.+... +-++.++..+..++.+.|++++|.++++++.+.+
T Consensus       795 ~~~~~--~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       795 TVVKK--APDNAVVLNNLAWLYLELKDPRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHh--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            77763  3556777777777777777744566666555431 2345666777778888888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=5.7e-21  Score=177.83  Aligned_cols=299  Identities=14%  Similarity=0.068  Sum_probs=222.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc
Q 014502           80 SLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCS  156 (423)
Q Consensus        80 ~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~  156 (423)
                      ....|++++|...    +.++.+.++.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|...
T Consensus        45 ~~~~~~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         45 FLLNEQPDKAIDL----FIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHhcCChHHHHHH----HHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3677888888888    5667666666777888888888888999999998888877532221   24677888888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 014502          157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLIHGSLKARDFDS  232 (423)
Q Consensus       157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~  232 (423)
                      |++++|..+|+++.+.  .+++..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++
T Consensus       121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            9999999998888762  345667888888888888999999988888887654332    1235566777888888999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          233 VDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       233 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      |.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++.+.+
T Consensus       199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            988888887653 2345567777888888888888988888888754222245677788888888888888888888877


Q ss_pred             CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh---cccc-chHHHHHHHHhCCCc
Q 014502          313 CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR---CAAY-DRLDLFLDHIKGSYK  388 (423)
Q Consensus       313 ~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~~~~  388 (423)
                      .  .|+...  +..+...+.+.|++++|..+++++.+.  .|+ ...++.++..+..   .|+. ++...+.+++++++.
T Consensus       278 ~--~p~~~~--~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~-~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~  350 (389)
T PRK11788        278 E--YPGADL--LLALAQLLEEQEGPEAAQALLREQLRR--HPS-LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK  350 (389)
T ss_pred             h--CCCchH--HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcC-HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence            4  355544  677888888888888888888888764  344 4566666665553   3344 467778888877777


Q ss_pred             ccHH
Q 014502          389 LRRA  392 (423)
Q Consensus       389 p~~~  392 (423)
                      |++.
T Consensus       351 ~~p~  354 (389)
T PRK11788        351 RKPR  354 (389)
T ss_pred             CCCC
Confidence            7665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=7.1e-21  Score=177.19  Aligned_cols=306  Identities=12%  Similarity=0.050  Sum_probs=247.6

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTY  182 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~  182 (423)
                      +...........+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.. .+..++   ..++
T Consensus        33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~  110 (389)
T PRK11788         33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLAL  110 (389)
T ss_pred             hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence            333333334455678899999999999999874 23566899999999999999999999999987 321121   2467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 014502          183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEG  258 (423)
Q Consensus       183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~  258 (423)
                      ..+...|.+.|++++|.++|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..++.    ..+..+...
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            888999999999999999999998764 347889999999999999999999999999876533322    245567778


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChh
Q 014502          259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD  338 (423)
Q Consensus       259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~  338 (423)
                      +...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.++++.+.+  |+....+++.++.+|...|+++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHH
Confidence            889999999999999998864 3346678888899999999999999999998754  4433333888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh---cCChhHHHHHH
Q 014502          339 DVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR---AGLSGKLDSVI  414 (423)
Q Consensus       339 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~  414 (423)
                      +|...++++.+..  |+ ...+..++..+.+.|+.+ +...+.+.+..  .|+..++..++..+..   .|+.+++..++
T Consensus       267 ~A~~~l~~~~~~~--p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~  341 (389)
T PRK11788        267 EGLEFLRRALEEY--PG-ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLL  341 (389)
T ss_pred             HHHHHHHHHHHhC--CC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence            9999999998853  44 456688999999999995 67777777764  6888889888888775   56899999999


Q ss_pred             HHHHhcCC
Q 014502          415 NEMKFAEY  422 (423)
Q Consensus       415 ~~m~~~g~  422 (423)
                      ++|..+++
T Consensus       342 ~~~~~~~~  349 (389)
T PRK11788        342 RDLVGEQL  349 (389)
T ss_pred             HHHHHHHH
Confidence            99988764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=6.5e-18  Score=165.37  Aligned_cols=322  Identities=11%  Similarity=0.025  Sum_probs=195.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      .+.|++++|..+    ++......+.+...+..++.+....|+++.|...|+++.+.. +.+...+..+...+...|+++
T Consensus        53 ~~~g~~~~A~~l----~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~  127 (656)
T PRK15174         53 LRKDETDVGLTL----LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA  127 (656)
T ss_pred             HhcCCcchhHHH----hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence            567777777777    445555555555566666666666777777777777776652 224456666666777777777


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      +|...+++..+.  -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+
T Consensus       128 ~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        128 TVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence            777777776652  1233455666666777777777777777766554333 22223222 2356667777777777766


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC
Q 014502          241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE----LEEQLETLTKCNQS  316 (423)
Q Consensus       241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~  316 (423)
                      .+....++...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++    |...+++..+  ..
T Consensus       204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~  280 (656)
T PRK15174        204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FN  280 (656)
T ss_pred             HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hC
Confidence            554322333444444556666777777777777776653 3345566666677777777664    6667776666  33


Q ss_pred             CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccH-HHH
Q 014502          317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRR-ATY  394 (423)
Q Consensus       317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~-~~~  394 (423)
                      |+... ++..+...+...|++++|...+++..+  ..|.++..+..+..++.+.|+.+ +...+.+....  .|+. ..+
T Consensus       281 P~~~~-a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~  355 (656)
T PRK15174        281 SDNVR-IVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN  355 (656)
T ss_pred             CCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence            54332 266666777777777777777777666  34556666666777777777764 45555555543  3332 233


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          395 DFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       395 ~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ..+..++...|+.++|...|++..+
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445566677777777777766543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=4.2e-17  Score=159.75  Aligned_cols=328  Identities=10%  Similarity=0.033  Sum_probs=262.0

Q ss_pred             HHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC
Q 014502           43 LISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV  121 (423)
Q Consensus        43 ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~  121 (423)
                      ++-.+.+.| ...+..++......-+.+....+...+..+..|++++|.+.    +++.....+.+...+..+...+.+.
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~----l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQV----VNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHH----HHHHHHhCCCChHHHHHHHHHHHHc
Confidence            455566666 44567888888776777766666666555889999999999    6777777777889999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW  201 (423)
Q Consensus       122 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  201 (423)
                      |++++|...+++..+.. +.+...+..+...+...|++++|...++.+....  +.+...+..+ ..+...|++++|...
T Consensus       124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence            99999999999998862 3357788999999999999999999999887522  2233333333 457889999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHh
Q 014502          202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR----VKSFLKFLLG  277 (423)
Q Consensus       202 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~  277 (423)
                      ++.+.+....++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++    |...+++..+
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9998877544455566666788999999999999999998765 3456778889999999999986    8999999988


Q ss_pred             CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502          278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA  357 (423)
Q Consensus       278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  357 (423)
                      .. +.+...+..+...+.+.|++++|...+++..+.  .|+.... +..+...|...|++++|...++++.+.  .|.++
T Consensus       279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a-~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~  352 (656)
T PRK15174        279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV-RAMYARALRQVGQYTAASDEFVQLARE--KGVTS  352 (656)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence            63 345778899999999999999999999999984  4665433 777889999999999999999999874  35555


Q ss_pred             HhHHHHHHHHhhccccc-hHHHHHHHHhC
Q 014502          358 EDVEMVICSYFRCAAYD-RLDLFLDHIKG  385 (423)
Q Consensus       358 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~  385 (423)
                      ..+..+..++...|+.+ +...+.+.+..
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            55566678889999985 67777777654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=5.2e-16  Score=134.52  Aligned_cols=372  Identities=16%  Similarity=0.131  Sum_probs=272.3

Q ss_pred             ccHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCC-----------
Q 014502           39 SSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGN-----------  104 (423)
Q Consensus        39 ~~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~-----------  104 (423)
                      +=|.|+.-+.+....+..-+++.|.+.|++-+...--.|+.-   +.+.++.-+.+-  | |-.|...+           
T Consensus       118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~--~-Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWE--E-FVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHH--H-Hhhcccccccccccccccc
Confidence            444455444444477788889999888888887766666655   344443322222  2 33333222           


Q ss_pred             ---------CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502          105 ---------ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY  175 (423)
Q Consensus       105 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  175 (423)
                               +.+..+|.+||.+.++....+.|.+++++-.....+.+..+||.+|.+-.-..    ..+++.+|.. ..+
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMis-qkm  269 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMIS-QKM  269 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHH-hhc
Confidence                     23677899999999999999999999999999888899999999997654332    2789999998 789


Q ss_pred             CCCHHhHHHHHHHHHhcCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC
Q 014502          176 KPNSKTYDAFISGFSSLGNVD----AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS-VDRFYEEMMS----LGII  246 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~  246 (423)
                      .||..|||+++++..+.|+++    .|.+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++..    +.++
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            999999999999999999876    467888999999999999999999999999998865 4445555543    2222


Q ss_pred             ---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          247 ---P-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKIN---ENMAQKLVKCYCELGRVDELEEQLETLTKCNQ  315 (423)
Q Consensus       247 ---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  315 (423)
                         | |...|...++.|.+..+.+.|.++..-+....    +.|+   ...|..+....|.....+.-...++.|...-.
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence               2 45678899999999999999999877665321    2333   23567788888999999999999999998877


Q ss_pred             CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc-cc--c-------h-HHHHHHHH-
Q 014502          316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA-AY--D-------R-LDLFLDHI-  383 (423)
Q Consensus       316 ~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~-~~--~-------~-~~~~~~~~-  383 (423)
                      -|+..+  ...++.+....|+++-..++|.+++..|...+ .+.-..++..+++.+ ..  .       + ++....+. 
T Consensus       430 ~p~~~~--m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e  506 (625)
T KOG4422|consen  430 FPHSQT--MIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE  506 (625)
T ss_pred             cCCchh--HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            788877  78888999999999999999999998875433 344444444444433 11  0       0 11111111 


Q ss_pred             --------hCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502          384 --------KGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       384 --------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  421 (423)
                              ...........+.....+.+.|..++|.++|.-+...|
T Consensus       507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~  552 (625)
T KOG4422|consen  507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH  552 (625)
T ss_pred             HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence                    01123345667888888999999999999999885544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=2.9e-15  Score=147.06  Aligned_cols=352  Identities=8%  Similarity=-0.087  Sum_probs=256.7

Q ss_pred             hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHH
Q 014502           53 SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVF  131 (423)
Q Consensus        53 ~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (423)
                      ..+...+.....  ..|+...|..+-.+ ...|++++|++.    +++..+..+.+..+|..+..+|...|++++|..-|
T Consensus       144 ~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~----~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~  217 (615)
T TIGR00990       144 NKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVED----TTAALELDPDYSKALNRRANAYDGLGKYADALLDL  217 (615)
T ss_pred             HHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHH----HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345667776654  45666677766666 688999999999    56666666678889999999999999999998766


Q ss_pred             HHHHHCCC----------------------------CC-CHHHHHHHHH------------------------------H
Q 014502          132 TSMEAQGI----------------------------KP-DSAVFNSLIC------------------------------A  152 (423)
Q Consensus       132 ~~m~~~g~----------------------------~p-~~~~~~~li~------------------------------~  152 (423)
                      ......+-                            .| +...+..+..                              .
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (615)
T TIGR00990       218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL  297 (615)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence            54432110                            00 0000000000                              0


Q ss_pred             H------HccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          153 C------LCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       153 ~------~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      .      ...+++++|.+.|++..+.....| +...|..+...+...|++++|+..+++..+.... +...|..+...+.
T Consensus       298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~  376 (615)
T TIGR00990       298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNL  376 (615)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHH
Confidence            0      112578899999999887322334 3456788888899999999999999999876422 4668888889999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      ..|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|..
T Consensus       377 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~  454 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMA  454 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999987764 3456788889999999999999999999999864 3456677888899999999999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH-------HHHHHHHhhccccc-hHH
Q 014502          306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-------EMVICSYFRCAAYD-RLD  377 (423)
Q Consensus       306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-------~~l~~~~~~~~~~~-~~~  377 (423)
                      .++...+.  .|+.... |+.+...+...|++++|++.|++..+..  |.+...+       +.....+...|+.+ +..
T Consensus       455 ~~~~al~~--~P~~~~~-~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       455 TFRRCKKN--FPEAPDV-YNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHHh--CCCChHH-HHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99998874  3554332 8888999999999999999999988743  2222111       22222333457774 566


Q ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+.+.+... +.+...+..+...+.+.|++++|.+.|++..+
T Consensus       530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666655542 33456788999999999999999999988653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=5.4e-17  Score=146.60  Aligned_cols=331  Identities=14%  Similarity=0.139  Sum_probs=248.1

Q ss_pred             hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-----------
Q 014502           71 QFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQG-----------  138 (423)
Q Consensus        71 ~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------  138 (423)
                      ..+|+.+-..+ .+|++.+|+..    ++.+.+..+.....|..+..++...|+.+.|.+.|.+..+..           
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~----y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg  191 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALAL----YRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHH----HHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence            44555555553 45556666665    444554444455556666666666666666655555554431           


Q ss_pred             ---------------------CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCH
Q 014502          139 ---------------------IKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNV  195 (423)
Q Consensus       139 ---------------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~  195 (423)
                                           ..|. ...|..+.-.+-..|+...|++.|++..+   +.|+ ...|-.|...|...+.+
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~  268 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIF  268 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcc
Confidence                                 0121 22455555566667788888888887765   3455 34677788888888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                      +.|...|.+....... ...+|..+...|...|+.|-|+..|++..+.  .|+ ...|+.+..++-..|++.+|.+.+.+
T Consensus       269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence            8888888877765322 4667777778888899999999999988875  465 57899999999999999999999999


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF  354 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  354 (423)
                      .+... +......+.|...|.+.|.+++|.++|....+  +.|..... ++.|...|-..|++++|+..+++..+  +.|
T Consensus       346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa-~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P  419 (966)
T KOG4626|consen  346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAA-HNNLASIYKQQGNLDDAIMCYKEALR--IKP  419 (966)
T ss_pred             HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhh-hhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence            99863 23455778899999999999999999999888  55765544 89999999999999999999999987  778


Q ss_pred             CChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCccc-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          355 KSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       355 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .-.++++.+...|...|+.+ ++.-+.+.+.  +.|. .+.++-|...|..+|+..+|++-+++-.+
T Consensus       420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK  484 (966)
T ss_pred             hHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence            88999999999999999995 5777776665  3565 67889999999999999999999987654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.80  E-value=4.3e-15  Score=155.36  Aligned_cols=326  Identities=10%  Similarity=0.021  Sum_probs=204.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHH------------
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFN------------  147 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~------------  147 (423)
                      ...|++++|...    +++..+..+.|..++..+...+.+.|++++|...|++..+..... ....|.            
T Consensus       280 ~~~g~~~~A~~~----l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        280 VDSGQGGKAIPE----LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            577888888888    455556666678888888888888888888888888887753221 111221            


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 014502          148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL-------  220 (423)
Q Consensus       148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------  220 (423)
                      .....+.+.|++++|+..|++..+.  -+.+...+..+...+...|++++|++.|++..+.... +...+..+       
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            1234566788888888888888762  2334556677778888888888888888888765322 23222222       


Q ss_pred             -----------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          221 -----------------------------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       221 -----------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                                                         ...+...|++++|++.|++..+.. +-+...+..+...|.+.|++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence                                               233456688888888888877653 22355666777788888888


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------------------
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-------------------------------  314 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------------------------  314 (423)
                      ++|...++++.+.. +.+...+..+...+...++.++|...++.+....                               
T Consensus       512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            88888888877642 1223222222222333333333333333221100                               


Q ss_pred             -------CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502          315 -------QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS  386 (423)
Q Consensus       315 -------~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  386 (423)
                             ..|+... .+..+...+.+.|+.++|++.|++..+  ..|.++..+..++..+...|+.+ +.+.+...... 
T Consensus       591 eA~~~l~~~p~~~~-~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-  666 (1157)
T PRK11447        591 EAEALLRQQPPSTR-IDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-  666 (1157)
T ss_pred             HHHHHHHhCCCCch-HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence                   0122111 145566677777777777777777776  34666777777777777777774 44444433322 


Q ss_pred             CcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          387 YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+.+...+..+..++.+.|++++|.+++++...
T Consensus       667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            122355566667777777777777777777654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.79  E-value=6.7e-15  Score=153.91  Aligned_cols=320  Identities=9%  Similarity=0.002  Sum_probs=196.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      ...|++++|...    +++.....+.+...+..+...+...|++++|++.|++..+... .+...+..+...|. .++.+
T Consensus       362 ~~~g~~~eA~~~----~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~  435 (1157)
T PRK11447        362 LKANNLAQAERL----YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE  435 (1157)
T ss_pred             HHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence            355666666666    3444444445556666666667777777777777766665421 12333333333332 12233


Q ss_pred             HHHHHHHHHHhcCC-------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          161 TALSLFEIMVSSEE-------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       161 ~A~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                      +|+.+++.+.....       ..-....+..+...+...|++++|++.|++..+.... +...+..+...|.+.|++++|
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence            33333322211000       0000112344455555666666666666666554322 344555555566666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHH
Q 014502          234 DRFYEEMMSLGIIPSIPILE--------------------------------------------KVLEGLCARRKLDRVK  269 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~a~  269 (423)
                      ...+++..+.. +.+...+.                                            .....+...|+.++|.
T Consensus       515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~  593 (1157)
T PRK11447        515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE  593 (1157)
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence            66666554432 11121111                                            2234455566666666


Q ss_pred             HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ++++.     .+.+...+..+...+.+.|++++|...|+++.+.  .|+.... +..+...|...|+.++|++.++...+
T Consensus       594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a-~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADA-RLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            66551     3445567778889999999999999999999985  4654332 88899999999999999999998876


Q ss_pred             CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCC--cc---cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSY--KL---RRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                        ..|+++..+..+..++...|+.+ +.+.+.+.+...-  .|   +...+..+...+.+.|++++|...|++..
T Consensus       666 --~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        666 --TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             --cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              45667888888999999999995 6777776665321  22   23466677889999999999999998875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=5.2e-16  Score=140.36  Aligned_cols=356  Identities=13%  Similarity=0.078  Sum_probs=194.2

Q ss_pred             HHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc
Q 014502           43 LISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK  120 (423)
Q Consensus        43 ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~  120 (423)
                      |.+.+-+.+.....+....|.-. -.|+..--.-++++  ++..+.+....-    -..-.+.+..-..+|..+.+.+..
T Consensus        54 lah~~yq~gd~~~a~~h~nmv~~-~d~t~~~~llll~ai~~q~~r~d~s~a~----~~~a~r~~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   54 LAHRLYQGGDYKQAEKHCNMVGQ-EDPTNTERLLLLSAIFFQGSRLDKSSAG----SLLAIRKNPQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHhccCHHHHHHHHhHhhc-cCCCcccceeeehhhhhcccchhhhhhh----hhhhhhccchHHHHHHHHHHHHHH
Confidence            44556666655443444444211 12322222344555  344455544433    122223344567899999999999


Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH-HHHHHHhcCCHHHHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA-FISGFSSLGNVDAMN  199 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~  199 (423)
                      .|++++|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|.+..+   +.|+.....+ +...+-..|++.+|.
T Consensus       129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence            99999999999999987322 567899999999999999999999988876   3566554333 223333456666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       200 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      ..|.+..+.... =...|+.|...+-..|+...|++-|++..+.  .|+ ...|-.+-..|...+.++.|...+.+....
T Consensus       205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l  281 (966)
T KOG4626|consen  205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL  281 (966)
T ss_pred             HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence            666666554321 2345555555555566666666666555442  233 234444444454444444444444444432


Q ss_pred             C--------------------------------CccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502          279 G--------------------------------WKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS  325 (423)
Q Consensus       279 g--------------------------------~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~  325 (423)
                      .                                .+|+ ...|+.|..++-..|++.+|.+.+++....  .|+..-. .+
T Consensus       282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hada-m~  358 (966)
T KOG4626|consen  282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADA-MN  358 (966)
T ss_pred             CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHH-HH
Confidence            1                                1222 334555555555555555555555555442  2332221 34


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCccc-HHHHHHHHHHHHh
Q 014502          326 GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLR-RATYDFLVAGYRR  403 (423)
Q Consensus       326 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  403 (423)
                      .|...|...|.+++|..+|+...+  +.|.-....+.|...|.++|+. +++.-|.+.++  +.|+ ...|+-+...|-.
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke  434 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE  434 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence            455555555555555555555444  3333344445555555555555 34444444443  2444 3445555555555


Q ss_pred             cCChhHHHHHHHHH
Q 014502          404 AGLSGKLDSVINEM  417 (423)
Q Consensus       404 ~g~~~~a~~~~~~m  417 (423)
                      .|+.+.|.+.+.+-
T Consensus       435 ~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  435 MGDVSAAIQCYTRA  448 (966)
T ss_pred             hhhHHHHHHHHHHH
Confidence            55555555554443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=4.9e-14  Score=138.45  Aligned_cols=325  Identities=9%  Similarity=-0.037  Sum_probs=244.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      ++.|++++|+..|    ++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|+++
T Consensus       138 ~~~~~~~~Ai~~y----~~al~~-~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       138 YRNKDFNKAIKLY----SKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHcCCHHHHHHHH----HHHHhc-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence            6889999999995    444433 3678889999999999999999999999999863 225668999999999999999


Q ss_pred             HHHHHHHHHHhcCCC---------------------------CCC-HHhHHHH---------------------------
Q 014502          161 TALSLFEIMVSSEEY---------------------------KPN-SKTYDAF---------------------------  185 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~---------------------------~p~-~~~~~~l---------------------------  185 (423)
                      +|+.-|.......+.                           .|. ...+..+                           
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG  291 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence            998766544321110                           010 0000000                           


Q ss_pred             ---HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 014502          186 ---ISGF------SSLGNVDAMNKWYAANIAAG-FSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILE  253 (423)
Q Consensus       186 ---i~~~------~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~  253 (423)
                         +...      ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+..  |+ ...|.
T Consensus       292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~  369 (615)
T TIGR00990       292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYI  369 (615)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHH
Confidence               0000      11257889999999988764 223 45678888888999999999999999988753  54 56788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh
Q 014502          254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL  333 (423)
Q Consensus       254 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~  333 (423)
                      .+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.  .|+.... +..+...+.+
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~-~~~la~~~~~  445 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFS-HIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHH-HHHHHHHHHH
Confidence            88888999999999999999998863 345778999999999999999999999999884  4654433 7788889999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCc--c---cH-HHHHHHHHHHHhcCC
Q 014502          334 SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYK--L---RR-ATYDFLVAGYRRAGL  406 (423)
Q Consensus       334 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~  406 (423)
                      .|++++|+..|++..+  ..|.++..++.+...+...|+++ +.+.+.+.+...-.  +   +. ..++.....+...|+
T Consensus       446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~  523 (615)
T TIGR00990       446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD  523 (615)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence            9999999999999987  45778999999999999999995 67777776653211  1   11 112222333445799


Q ss_pred             hhHHHHHHHHHHh
Q 014502          407 SGKLDSVINEMKF  419 (423)
Q Consensus       407 ~~~a~~~~~~m~~  419 (423)
                      +++|.+++++...
T Consensus       524 ~~eA~~~~~kAl~  536 (615)
T TIGR00990       524 FIEAENLCEKALI  536 (615)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.77  E-value=9.1e-14  Score=139.22  Aligned_cols=334  Identities=10%  Similarity=-0.027  Sum_probs=222.9

Q ss_pred             HHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502           74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA  152 (423)
Q Consensus        74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  152 (423)
                      +..+... ...|++++|.+.    +++.....+.+...+..+...+...|++++|...+++..+.. +.+.. +..+..+
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~----~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~  125 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTL----WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYV  125 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHH
Confidence            4444444 466677777766    444444455556666666666667777777777777766652 22444 6666666


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHH-----------------------------------
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVD-----------------------------------  196 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~-----------------------------------  196 (423)
                      +...|+.++|+..+++..+.   .|+ ...+..+..++...+..+                                   
T Consensus       126 l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~  202 (765)
T PRK10049        126 YKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT  202 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence            66777777777777766652   233 333334444444444443                                   


Q ss_pred             -----------HHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 014502          197 -----------AMNKWYAANIAA-GFSVNVQ-TYE----SLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEG  258 (423)
Q Consensus       197 -----------~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~  258 (423)
                                 +|++.++.+.+. ...|+.. .+.    ..+..+...|++++|+..|+.+.+.+.. |+. .-..+...
T Consensus       203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~  281 (765)
T PRK10049        203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASA  281 (765)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHH
Confidence                       455555555533 1222221 111    1133456779999999999999887632 332 22235778


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCch-HHHH
Q 014502          259 LCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLVKCYCELGRVDELEEQLETLTKCNQ-----------SPEV-LLHF  323 (423)
Q Consensus       259 ~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~-~~~~  323 (423)
                      |...|++++|..+++++.+.....   .......+..++.+.|++++|.++++.+.....           .|+. ....
T Consensus       282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a  361 (765)
T PRK10049        282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG  361 (765)
T ss_pred             HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence            999999999999999987643111   134566677788999999999999999987531           1231 1122


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYR  402 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~  402 (423)
                      +..+...+...|+.++|+++++++..  ..|.++..+..+...+...|+.+ +.+.+.+.+.. .+-+...+...+..+.
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHH
Confidence            56678889999999999999999987  45778999999999999999996 56666655553 2334677788888999


Q ss_pred             hcCChhHHHHHHHHHHhc
Q 014502          403 RAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       403 ~~g~~~~a~~~~~~m~~~  420 (423)
                      +.|++++|..+++++.+.
T Consensus       439 ~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HhCCHHHHHHHHHHHHHh
Confidence            999999999999998753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=3.5e-13  Score=133.00  Aligned_cols=196  Identities=9%  Similarity=-0.025  Sum_probs=154.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CccCHHhHHHHHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----WKINENMAQKLVKCYC  295 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~~~  295 (423)
                      +-++...|++.++++.|+.|...+.+...++-..+.++|...+++++|..+++.+....     ..++......|.-+|.
T Consensus       299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l  378 (822)
T PRK14574        299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN  378 (822)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence            44667789999999999999988876667888999999999999999999999997643     2234444678899999


Q ss_pred             hcCCHHHHHHHHHHHHhCCC-----------CCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          296 ELGRVDELEEQLETLTKCNQ-----------SPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~-----------~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      ..+++++|..+++.+.+...           .|+ .+...+..++..+...|++.+|++.++++..  ..|.++.....+
T Consensus       379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~  456 (822)
T PRK14574        379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIAL  456 (822)
T ss_pred             hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            99999999999999987321           122 1112355678888999999999999999987  557789999999


Q ss_pred             HHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          364 ICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      ...+...|.+..++...+....-.+-+..+....+.++...|++++|..+.+...
T Consensus       457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999654444455554434457778889999999999999988887664

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=5.2e-13  Score=116.19  Aligned_cols=340  Identities=14%  Similarity=0.140  Sum_probs=210.1

Q ss_pred             CcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 014502           68 NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF  146 (423)
Q Consensus        68 ~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  146 (423)
                      +.+..||.++|.+ |+-...++|.+++.   +.-...+..+..+||.+|.+-.-..+    .++..+|....+.||..|+
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~k---E~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf  276 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYK---EHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF  276 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHH---HHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence            4556778888888 77777888888852   22224445678888888776553333    6778888888888888888


Q ss_pred             HHHHHHHHccCCHHH----HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCCC----C
Q 014502          147 NSLICACLCSGDVVT----ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA-MNKWYAANIA----AGFSV----N  213 (423)
Q Consensus       147 ~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~~----~  213 (423)
                      |+++.+..+.|+++.    |.+++.+|++ -|+.|+..+|..+|..+++.++..+ |..+..++..    ..++|    |
T Consensus       277 NalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d  355 (625)
T KOG4422|consen  277 NALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD  355 (625)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence            888888888887654    4567777887 7888888888888888777776643 4444444433    22222    3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPSI---PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM  286 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  286 (423)
                      ..-|...++.|.+..+.+-|.++-.-+...    -+.|+.   .-|..+....|.....+.....|+.|.-.-.-|+..+
T Consensus       356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~  435 (625)
T KOG4422|consen  356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT  435 (625)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence            444566677777777777777766554432    123332   2355666667777777777778887777666677777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC-Ch--------------------hHHHHHHH
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-RL--------------------DDVEYSVG  345 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~  345 (423)
                      ...++++..-.|+++-.-+++..++..|..-....  -.-++..+++.. ++                    +.....-.
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l--~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~  513 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL--REEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI  513 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH--HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            77777777777777777777777666553322222  222222223222 11                    11111223


Q ss_pred             HHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCc----ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          346 RMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYK----LRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      +|......   +...+.+...+.+.|..+ +.+.+.-..+++.+    |......-+++.-.+.+....|...++-|...
T Consensus       514 R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~  590 (625)
T KOG4422|consen  514 RQRAQDWP---ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF  590 (625)
T ss_pred             HHHhccCC---hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            34433332   666677777777777774 45555444344322    22333345566666777777777777776544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.71  E-value=8.5e-13  Score=132.31  Aligned_cols=334  Identities=9%  Similarity=-0.020  Sum_probs=238.3

Q ss_pred             HHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502           75 DALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC  153 (423)
Q Consensus        75 ~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  153 (423)
                      .-.+.. .-.|+.++|+++    +.+.......+...+..+...+...|++++|.++|++..+.. +.+...+..+...+
T Consensus        19 ~d~~~ia~~~g~~~~A~~~----~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l   93 (765)
T PRK10049         19 ADWLQIALWAGQDAEVITV----YNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL   93 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHH----HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            334444 678999999988    566655455677789999999999999999999999988762 33577788899999


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                      ...|++++|+..+++..+.  .+.+.. +..+..++...|+.++|+..+++..+..+. +...+..+...+...|..++|
T Consensus        94 ~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence            9999999999999999873  234455 888888999999999999999999987544 555566666777666666655


Q ss_pred             HHHHH----------------------------------------------HHHHC-CCCCCHH-HHH----HHHHHHHh
Q 014502          234 DRFYE----------------------------------------------EMMSL-GIIPSIP-ILE----KVLEGLCA  261 (423)
Q Consensus       234 ~~~~~----------------------------------------------~m~~~-~~~p~~~-~~~----~li~~~~~  261 (423)
                      ++.++                                              .+.+. ...|+.. .+.    ..+..+..
T Consensus       170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~  249 (765)
T PRK10049        170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA  249 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence            54443                                              33321 1122211 111    11334556


Q ss_pred             cCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcCChhH
Q 014502          262 RRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       262 ~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      .|++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+..... ......+..+..++...|++++
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            78899999999999887532 322 22225678889999999999999987643211 1111115566677889999999


Q ss_pred             HHHHHHHHHhCCC-----------CCCC--hHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcC
Q 014502          340 VEYSVGRMGKQGL-----------SFKS--AEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAG  405 (423)
Q Consensus       340 a~~~~~~m~~~~~-----------~~~~--~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  405 (423)
                      |...++++.+..-           .|++  ...+..+...+...|+.+ +.+.+.+.+.. .+-+...+..+...+...|
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            9999998886421           1111  234456777888888885 66666666554 3446778889999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 014502          406 LSGKLDSVINEMKF  419 (423)
Q Consensus       406 ~~~~a~~~~~~m~~  419 (423)
                      ++++|++.+++...
T Consensus       408 ~~~~A~~~l~~al~  421 (765)
T PRK10049        408 WPRAAENELKKAEV  421 (765)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=1.2e-12  Score=132.00  Aligned_cols=259  Identities=10%  Similarity=-0.067  Sum_probs=138.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      +...|..+..++.. ++.++|...+.+....   .|+......+...+...|++++|...|+++...  .|+...+..+.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la  549 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAA  549 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHH
Confidence            34455555555554 5666666655555441   244333222333334566666666666665443  23333344555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      ..+.+.|++++|.+.++...+.. +.+...+..+.......|++++|...+++..+.  .|+...+..+...+.+.|+.+
T Consensus       550 ~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        550 NTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence            55666666666666666665543 122222223333333446666666666666653  345556666666666666666


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHH
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFL  380 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  380 (423)
                      +|...+++....  .|+.... ++.+...+...|+.++|+..+++..+  ..|.++..+..+..++...|+.+ +...+.
T Consensus       627 eA~~~l~~AL~l--~Pd~~~a-~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        627 AAVSDLRAALEL--EPNNSNY-QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             HHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666666653  3444432 55555566666666666666666665  34555666666666666666664 344444


Q ss_pred             HHHhCCCccc-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          381 DHIKGSYKLR-RATYDFLVAGYRRAGLSGKLDSVINE  416 (423)
Q Consensus       381 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (423)
                      +.+..  .|+ ..+.....+...+..+++.|.+-++.
T Consensus       702 ~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r  736 (987)
T PRK09782        702 LVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR  736 (987)
T ss_pred             HHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44332  233 34444445555555555555554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=4.6e-13  Score=123.96  Aligned_cols=281  Identities=9%  Similarity=-0.016  Sum_probs=204.8

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH--HHHHHHHhcCCHHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSL-ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDA  197 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~  197 (423)
                      .|+++.|++.+....+..  +++..+..+ ..+..+.|+++.|.+.+.++.+   ..|+...+.  .....+...|++++
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHH
Confidence            688888888887766542  233333333 4455788899999999988876   246654333  33567788899999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 014502          198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKS  270 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~  270 (423)
                      |.+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999998887644 6778888888899999999999999998887654322       133334444444556667777


Q ss_pred             HHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          271 FLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       271 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      +++.+.+. .+.++.....+...+...|+.++|.+++++..+..  |+...    .++.+....++.+++.+..++..+ 
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l----~~l~~~l~~~~~~~al~~~e~~lk-  322 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL----VLLIPRLKTNNPEQLEKVLRQQIK-  322 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH----HHHHhhccCCChHHHHHHHHHHHh-
Confidence            77776543 34577788888899999999999999998888743  43322    234445566889999999988887 


Q ss_pred             CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          351 GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                       ..|+++.....+...+.+.++++ +.+.|...+..  .|+...|..+..++.+.|+.++|.+++++-.
T Consensus       323 -~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        323 -QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             44778888889999999999996 45555555553  6888888899999999999999999988653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.65  E-value=7.3e-12  Score=126.31  Aligned_cols=321  Identities=8%  Similarity=-0.032  Sum_probs=238.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHccCC-
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-G-IKPDSAVFNSLICACLCSGD-  158 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~-  158 (423)
                      ..+...++...    +..|.+..+-|....--+.-...+.|+.++|.++|+..... + -.++...-+-++..|.+.+. 
T Consensus       354 ~~~~~~~~~~~----~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  429 (987)
T PRK09782        354 ATRNKAEALRL----ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL  429 (987)
T ss_pred             ccCchhHHHHH----HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence            44677777777    45565555557777777777788899999999999988762 1 22345556677777777655 


Q ss_pred             --HHHHHHH----------------------HHHHHhcCCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014502          159 --VVTALSL----------------------FEIMVSSEEY-KP--NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS  211 (423)
Q Consensus       159 --~~~A~~~----------------------~~~m~~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  211 (423)
                        ..++..+                      ++......+. ++  +...|..+..++.. ++.++|...+.+....  .
T Consensus       430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~  506 (987)
T PRK09782        430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--Q  506 (987)
T ss_pred             cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--C
Confidence              3333222                      2222221222 33  56677888877776 8889999988887765  4


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502          212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV  291 (423)
Q Consensus       212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li  291 (423)
                      |+......+...+...|++++|...|+++...  .|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+.
T Consensus       507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La  583 (987)
T PRK09782        507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH  583 (987)
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence            56544444455557899999999999997654  4555566677788899999999999999999864 23333444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502          292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA  371 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~  371 (423)
                      ..+...|++++|...+++..+.  .|+...  |..+...+.+.|++++|+..+++..+  ..|+++..++.+...+...|
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a--~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G  657 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNI--APSANA--YVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSG  657 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence            4555669999999999999984  466444  88999999999999999999999988  56888999999999999999


Q ss_pred             ccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          372 AYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       372 ~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      +.+ +...+.+.+.. .+-++..+..+..++...|++++|...+++..+
T Consensus       658 ~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        658 DIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            995 56777666654 234578899999999999999999999998754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.64  E-value=1.9e-11  Score=120.99  Aligned_cols=366  Identities=11%  Similarity=0.033  Sum_probs=252.5

Q ss_pred             cHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 014502           40 SNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL  117 (423)
Q Consensus        40 ~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~  117 (423)
                      |...+.. .+.| ...+...|.+..+..+.-....+ .++.. ...|+.++|+..    +++..............+...
T Consensus        38 y~~aii~-~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~----~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         38 YDSLIIR-ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDV----YERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             HHHHHHH-HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHH----HHHhccCCCCCHHHHHHHHHH
Confidence            3333333 4444 45668888887654444322344 55555 677999999999    455542222334444445678


Q ss_pred             HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502          118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA  197 (423)
Q Consensus       118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~  197 (423)
                      +...|++++|.++|+++.+.... ++..+..++..+...++.++|++.++++...   .|+...+..++..+...++..+
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence            89999999999999999987433 5677888889999999999999999999863   5776666444444444666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------------
Q 014502          198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEE--------------------------------------  239 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------------------------------  239 (423)
                      |++.++++.+.... +...+..+..++.+.|-...|.++..+                                      
T Consensus       188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        188 ALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            99999999998633 677778888888888766666554432                                      


Q ss_pred             ----------HHH-CCCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502          240 ----------MMS-LGIIPSI-PI----LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL  303 (423)
Q Consensus       240 ----------m~~-~~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a  303 (423)
                                +.. .+-.|.. ..    ..--+-++...|++.++++.++.+...|.+....+-..+.++|...++.++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence                      111 0111221 11    1233446677888999999999999888665666788889999999999999


Q ss_pred             HHHHHHHHhCCC----CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----------CCCCh---HhHHHHHHH
Q 014502          304 EEQLETLTKCNQ----SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL----------SFKSA---EDVEMVICS  366 (423)
Q Consensus       304 ~~~~~~~~~~~~----~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------~~~~~---~~~~~l~~~  366 (423)
                      ..+++.+.....    .|.... ....|.-+|...+++++|..+++++.+...          ..+++   ..+..++..
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~-~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLL-DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHHhhccccccCCCcchH-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            999998866431    111111 146788888999999999999999887211          01112   223456777


Q ss_pred             Hhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          367 YFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       367 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      +.-.|+.. +.+.+.++... -+-|......+.+.+...|.+.+|.+.++...
T Consensus       426 ~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            88888885 56666666443 35578888899999999999999999986654

>TIGR00540 hemY_coli hemY protein

Probab=99.63  E-value=3.6e-12  Score=118.69  Aligned_cols=287  Identities=8%  Similarity=-0.034  Sum_probs=191.0

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH--hHHHHHHHHHhcCCHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK--TYDAFISGFSSLGNVD  196 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~  196 (423)
                      ..|+++.|.+.+.+..+.  .|++. .+-....++...|+++.|.+.+.+..+.   .|+..  .--.....+...|+++
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence            568888888888777665  34433 3334456677778888888888887652   24442  3333467777788888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 014502          197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE-KVLEGL---CARRKLDRVKSFL  272 (423)
Q Consensus       197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~---~~~g~~~~a~~~~  272 (423)
                      .|.+.++.+.+..+. +..+...+...+.+.|++++|.+.+..+.+.++. +...+. .-..++   ...+..+++.+.+
T Consensus       171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            888888888887643 6667778888888888888888888888877643 333331 111111   2222333333344


Q ss_pred             HHHHhCC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 014502          273 KFLLGGG---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF-SGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       273 ~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      ..+.+..   .+.+...+..+...+...|+.++|.+++++..+..  |+.....+ ..........++.+.+.+.+++..
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            4443321   12367788888888999999999999999888854  44331101 111222234567788888888877


Q ss_pred             hCCCCCCCh--HhHHHHHHHHhhccccchHHHHHHH-HhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          349 KQGLSFKSA--EDVEMVICSYFRCAAYDRLDLFLDH-IKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       349 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      +  ..|+++  ....++...+.+.|+++.+..+.+. ......|+...+..+...+.+.|+.++|.+++++-
T Consensus       327 k--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       327 K--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             H--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6  446677  7778889999999999754444442 23234788888889999999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=5.9e-15  Score=130.54  Aligned_cols=252  Identities=20%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCC--CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGN--ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD  158 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  158 (423)
                      +..|++++|+++    +++.....  +.|...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...++
T Consensus        19 ~~~~~~~~Al~~----L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   19 YQRGDYEKALEV----LKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            456666666666    32221222  224444444555555566666666666666654322 34445555554 45666


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFY  237 (423)
Q Consensus       159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~  237 (423)
                      +++|.+++.+..+.   .++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.|
T Consensus        93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666554431   2444455555666666666666666666654332 2335555555566666666666666666


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 014502          238 EEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQS  316 (423)
Q Consensus       238 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  316 (423)
                      ++..+..  |+ ......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+..  
T Consensus       170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--  244 (280)
T PF13429_consen  170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--  244 (280)
T ss_dssp             HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred             HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence            6665542  33 4455556666666666666666665555442 3344455556666666666666666666655522  


Q ss_pred             CchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      |+.... ...+.+++...|+.++|.++.++.
T Consensus       245 p~d~~~-~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  245 PDDPLW-LLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             TT-HHH-HHHHHHHHT---------------
T ss_pred             cccccc-cccccccccccccccccccccccc
Confidence            322221 445556666666666666665544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.60  E-value=6.1e-15  Score=130.43  Aligned_cols=249  Identities=16%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502          114 LIALSGKVQNVPFAMHVFTSMEAQG-IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL  192 (423)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  192 (423)
                      +...+.+.|++++|.++++...... .+-|...|..+...+...++++.|.+.++++... + +-+...+..++.. ...
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-ccc
Confidence            3445555555555555554332222 1123333444444444455555555555555541 1 1123334444444 455


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSF  271 (423)
Q Consensus       193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~  271 (423)
                      +++++|.++++...+.  .++...+..++..+.+.++++++.++++...... ...+...|......+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5555555555444332  1233444445555555555555555555544321 223344444555555555555555555


Q ss_pred             HHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       272 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                      +++..+.. +.|......++..+...|+.+++.++++...+.. ..+...  +..+..+|...|+.++|...|++...  
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~--~~~la~~~~~lg~~~~Al~~~~~~~~--  242 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL--WDALAAAYLQLGRYEEALEYLEKALK--  242 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH--CHHHHHHHHHHT-HHHHHHHHHHHHH--
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH--HHHHHHHhcccccccccccccccccc--
Confidence            55555531 1124444455555555555555555554444432 111111  44455555555555555555555444  


Q ss_pred             CCCCChHhHHHHHHHHhhcccc
Q 014502          352 LSFKSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       352 ~~~~~~~~~~~l~~~~~~~~~~  373 (423)
                      ..|+||.....+..++.+.|+.
T Consensus       243 ~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  243 LNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HSTT-HHHHHHHHHHHT-----
T ss_pred             cccccccccccccccccccccc
Confidence            2233344444444444444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.57  E-value=5.3e-11  Score=110.30  Aligned_cols=291  Identities=10%  Similarity=0.048  Sum_probs=214.1

Q ss_pred             HHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhH-HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH--
Q 014502           74 WDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDE-YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN--  147 (423)
Q Consensus        74 ~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--  147 (423)
                      ...+..+   +..|+++.|.+.    ....... .+++.. |.....+..+.|+++.|.+.|.++.+.  .|+.....  
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~----l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l  157 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKL----MTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI  157 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHH----HHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence            3444555   567999999988    4443322 223333 333345558999999999999999875  55554333  


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHH
Q 014502          148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESL  220 (423)
Q Consensus       148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l  220 (423)
                      .....+...|++++|...+++..+.  -+-+...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..+
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l  235 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL  235 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3367888999999999999999872  2446678888999999999999999999999998755322       233444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      +....+..+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+.  +++....  ++.+....++.
T Consensus       236 ~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~  310 (398)
T PRK10747        236 MDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNP  310 (398)
T ss_pred             HHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCCh
Confidence            44444555666777777766443 2457788889999999999999999999999884  4555322  23344456999


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHH
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLF  379 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~  379 (423)
                      +++.+..+...+..  |+.... +..+...+...|++++|.+.|+...+.  .|+ ...+..+...+.+.|+.+ +.+.+
T Consensus       311 ~~al~~~e~~lk~~--P~~~~l-~l~lgrl~~~~~~~~~A~~~le~al~~--~P~-~~~~~~La~~~~~~g~~~~A~~~~  384 (398)
T PRK10747        311 EQLEKVLRQQIKQH--GDTPLL-WSTLGQLLMKHGEWQEASLAFRAALKQ--RPD-AYDYAWLADALDRLHKPEEAAAMR  384 (398)
T ss_pred             HHHHHHHHHHHhhC--CCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999988754  555432 678889999999999999999999984  444 777889999999999995 56666


Q ss_pred             HHHHh
Q 014502          380 LDHIK  384 (423)
Q Consensus       380 ~~~~~  384 (423)
                      .+-+.
T Consensus       385 ~~~l~  389 (398)
T PRK10747        385 RDGLM  389 (398)
T ss_pred             HHHHh
Confidence            65543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.57  E-value=3.5e-11  Score=101.35  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=196.5

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCCHHHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSSLGNVDAM  198 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a  198 (423)
                      +.+.++|.++|-+|.+.. +-+..+--++.+.|-+.|.++.|+++-+.+.++.+..-+  ....-.|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            357778888888887742 113334556777777888888888888887763221111  12334556667788888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       199 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                      +.+|..+.+.+. --.....-|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+....+++.|..++++
T Consensus       127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            888888876542 24556677888888888888888888888776544432    2356666666677888888888888


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF  354 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  354 (423)
                      ..+.. +-....--.+.+.....|+++.|.+.++.+.+.+  |+....+...|..+|...|+.++....+.++.+.... 
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-  281 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-  281 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence            87754 2233344456677888899999999999888855  6655555788888999999999988888888774332 


Q ss_pred             CChHhHHHHHHHHhhc-cccchHHHHHHHHhCCCcccHHHHHHHHHHHHh---cCChhHHHHHHHHHHhc
Q 014502          355 KSAEDVEMVICSYFRC-AAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRR---AGLSGKLDSVINEMKFA  420 (423)
Q Consensus       355 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~  420 (423)
                        +.....+...-... |..++...+.+.+.+  +|+...+..+++.-..   .|...+....++.|..+
T Consensus       282 --~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         282 --ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             --ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence              44444444433333 333455555565554  7888888888876643   35566777777777643

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=6.4e-11  Score=110.35  Aligned_cols=295  Identities=10%  Similarity=-0.012  Sum_probs=208.8

Q ss_pred             hHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 014502           73 SWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS--AVFN  147 (423)
Q Consensus        73 ~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~  147 (423)
                      ....+..+   +..|++..|.+.+    .+..+..+.....+-....++.+.|+++.|.+.+++..+..  |+.  ...-
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l----~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~  157 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLI----AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEI  157 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHH----HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHH
Confidence            44556666   6899999999994    55444332234445566778889999999999999987653  444  3444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---H
Q 014502          148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE-SLIH---G  223 (423)
Q Consensus       148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~li~---~  223 (423)
                      .....+...|+++.|...++.+.+.  -+-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..   +
T Consensus       158 ~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~  234 (409)
T TIGR00540       158 ARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIG  234 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence            4578888999999999999999973  2446678889999999999999999999999998754 333332 1112   2


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh-HHHHHHH--HHhc
Q 014502          224 SLKARDFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM-AQKLVKC--YCEL  297 (423)
Q Consensus       224 ~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~--~~~~  297 (423)
                      ....+..+++.+.+..+.+...   +.+...+..+...+...|+.++|.+++++..+..  ||... ...++..  ....
T Consensus       235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCC
Confidence            2333344444445555554321   1377888999999999999999999999999864  33331 1012222  2345


Q ss_pred             CCHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-
Q 014502          298 GRVDELEEQLETLTKCNQSPEVL--LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-  374 (423)
Q Consensus       298 g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-  374 (423)
                      ++.+.+.+.++...+.  .|+..  .. ..++...+.+.|++++|.+.|+........|+ +..+..+...+.+.|+.+ 
T Consensus       313 ~~~~~~~~~~e~~lk~--~p~~~~~~l-l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKN--VDDKPKCCI-NRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAE  388 (409)
T ss_pred             CChHHHHHHHHHHHHh--CCCChhHHH-HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHH
Confidence            7788899999888774  35554  32 56788889999999999999995333334454 666889999999999985 


Q ss_pred             hHHHHHHH
Q 014502          375 RLDLFLDH  382 (423)
Q Consensus       375 ~~~~~~~~  382 (423)
                      +.+.+.+.
T Consensus       389 A~~~~~~~  396 (409)
T TIGR00540       389 AAAMRQDS  396 (409)
T ss_pred             HHHHHHHH
Confidence            56666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.55  E-value=1e-10  Score=101.43  Aligned_cols=285  Identities=9%  Similarity=0.018  Sum_probs=210.5

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK  200 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  200 (423)
                      .|++.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+ ..-.++...+-+........|+.+.|..
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            58888888888887776533 234556666777788888888888888876 2223445556666677888888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLK  273 (423)
Q Consensus       201 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~  273 (423)
                      -++++.+.+.. +.........+|.+.|++.....+...|.+.|+--|.       .+|..+++-....+..+.-...|+
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            88888887644 6777788888888899999988888888888765554       357777777776777777677777


Q ss_pred             HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 014502          274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLS  353 (423)
Q Consensus       274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  353 (423)
                      ..... .+-++..-.+++.-+.++|+.++|.++.++..+.+.+|....      .-.+.+-++.+.-++..++-..  ..
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~------~~~~l~~~d~~~l~k~~e~~l~--~h  324 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR------LIPRLRPGDPEPLIKAAEKWLK--QH  324 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH------HHhhcCCCCchHHHHHHHHHHH--hC
Confidence            76554 445666677788888899999999999999888887776222      2345667777777777766655  33


Q ss_pred             CCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          354 FKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       354 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      |++|..+.+|..-|.+++.+..++.+.+.. -...|+..+|+.+..++.+.|+..+|.+..++-.
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaA-l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAA-LKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            556888889999999999886544444422 2347899999999999999999999988887643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.54  E-value=1.3e-10  Score=110.38  Aligned_cols=328  Identities=11%  Similarity=0.068  Sum_probs=248.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..|+.++|.++    +.++.+..+.+...|..|...|-+.|+.+++...+-..-... +-|...|-.+.....+.|.++
T Consensus       150 farg~~eeA~~i----~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  150 FARGDLEEAEEI----LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHhCCHHHHHHH----HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence            577999999999    567777777889999999999999999999998886655543 337789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT----YESLIHGSLKARDFDSVDRF  236 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~  236 (423)
                      .|.-.|.+..+.  -+++...+---...|-+.|+...|...|.++.......|..-    --..+..+...++-+.|.+.
T Consensus       225 qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  225 QARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999872  244544444556788899999999999999998754323322    23445667778888999998


Q ss_pred             HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CccCHHhHH
Q 014502          237 YEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG---------------------------WKINENMAQ  288 (423)
Q Consensus       237 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---------------------------~~~~~~~~~  288 (423)
                      ++..... +-..+...++.++..|.+...++.|......+....                           ..++..++ 
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-  381 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-  381 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence            8887662 224556678888899999999999988888776621                           22232331 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502          289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF  368 (423)
Q Consensus       289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~  368 (423)
                      .+.-++...+..+...-+.....+.+..|.....+|.-+.++|...|++.+|+.+|..+....... +...|-.+..+|-
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYM  460 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHH
Confidence            233455556666666666777777776677666679999999999999999999999998764433 3778899999999


Q ss_pred             hccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          369 RCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       369 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      ..|..+ |.+.|...+.. -+-+...--.|...+-+.|+.++|.+.+..|.
T Consensus       461 ~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            999996 45555555443 23345666678888999999999999998764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.51  E-value=5.9e-10  Score=106.00  Aligned_cols=362  Identities=11%  Similarity=0.065  Sum_probs=271.9

Q ss_pred             HhcCCchhHHHHHHHhhhccCCcChhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChh
Q 014502           47 LLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP  125 (423)
Q Consensus        47 l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~  125 (423)
                      .++....++.+++.+..+..+. ....|.+|-..+ +.|+..++...+    -.....++.|..-|..+.....+.|.++
T Consensus       150 farg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~----llAAHL~p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFW----LLAAHLNPKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence            3443456778899888765443 356777777774 888999998883    3344556668899999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HH----hHHHHHHHHHhcCCHHHHHH
Q 014502          126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SK----TYDAFISGFSSLGNVDAMNK  200 (423)
Q Consensus       126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~----~~~~li~~~~~~~~~~~a~~  200 (423)
                      +|.-.|.+..+.. +++...+---+..|-+.|+...|.+-|.++.+..  +|. ..    .--..++.+...++-+.|.+
T Consensus       225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999874 3355555566778899999999999999998732  232 22    22345667778888899999


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHH
Q 014502          201 WYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG---------------------------IIPSIPIL  252 (423)
Q Consensus       201 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------------------------~~p~~~~~  252 (423)
                      .++..... +-..+...++.++..|.+..+++.|......+....                           +.++...+
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            99887763 224467788999999999999999999888776622                           22333331


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRL  330 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~  330 (423)
                       -++-++.+.+..+....+...+......  .+...|.-+.++|...|++.+|.++|..+......-+  +.+|--+..+
T Consensus       382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c  458 (895)
T KOG2076|consen  382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARC  458 (895)
T ss_pred             -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHH
Confidence             2333445556666666666666666533  3456788899999999999999999999988543333  3349999999


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHH--------hCCCcccHHHHHHHHHHH
Q 014502          331 YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI--------KGSYKLRRATYDFLVAGY  401 (423)
Q Consensus       331 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~--------~~~~~p~~~~~~~l~~~~  401 (423)
                      |...|..++|.+.|+....  ..|.+.+.--.|...+.+.|+.| +.+.+..+.        ..++.|+...-......+
T Consensus       459 ~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l  536 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL  536 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence            9999999999999999988  55777888889999999999996 577776633        234567777777888999


Q ss_pred             HhcCChhHHHHHHHHHHhcC
Q 014502          402 RRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       402 ~~~g~~~~a~~~~~~m~~~g  421 (423)
                      .+.|+.++-..+..+|...+
T Consensus       537 ~~~gk~E~fi~t~~~Lv~~~  556 (895)
T KOG2076|consen  537 FQVGKREEFINTASTLVDDF  556 (895)
T ss_pred             HHhhhHHHHHHHHHHHHHHH
Confidence            99999999888888776543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3.9e-10  Score=95.15  Aligned_cols=297  Identities=16%  Similarity=0.157  Sum_probs=219.4

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH------HH
Q 014502           72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS------AV  145 (423)
Q Consensus        72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~  145 (423)
                      ..|-.=+..+-+.++++|++.    |-.|.+...-+..+.-+|.+.|.+.|.+|+|+++.+.+.++   ||.      ..
T Consensus        37 r~Yv~GlNfLLs~Q~dKAvdl----F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lA  109 (389)
T COG2956          37 RDYVKGLNFLLSNQPDKAVDL----FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLA  109 (389)
T ss_pred             HHHHhHHHHHhhcCcchHHHH----HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence            345555666678899999999    56677766667778889999999999999999999999886   442      24


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLI  221 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li  221 (423)
                      .-.+..-|...|-+|.|+++|..+.+ .+ ..-......|+..|-...+|++|+.+-+++.+.+..+..    .-|.-+.
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~d-e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVD-EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhc-ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            45567788899999999999999987 22 223457788999999999999999999999987655432    2344555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      ..+....+++.|..++.+..+.+ +-.+..--.+-+.....|+++.|.+.++...+.....-..+...|..+|...|+.+
T Consensus       188 q~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         188 QQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            55666789999999999887654 22233444556678889999999999999999865555678899999999999999


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc----chHH
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY----DRLD  377 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~  377 (423)
                      +....+..+.+....++...    .+-+.-....-.+.|...+.+-....  | +...+..++.........    +.+.
T Consensus       267 ~~~~fL~~~~~~~~g~~~~l----~l~~lie~~~G~~~Aq~~l~~Ql~r~--P-t~~gf~rl~~~~l~daeeg~~k~sL~  339 (389)
T COG2956         267 EGLNFLRRAMETNTGADAEL----MLADLIELQEGIDAAQAYLTRQLRRK--P-TMRGFHRLMDYHLADAEEGRAKESLD  339 (389)
T ss_pred             HHHHHHHHHHHccCCccHHH----HHHHHHHHhhChHHHHHHHHHHHhhC--C-cHHHHHHHHHhhhccccccchhhhHH
Confidence            99999999988665555433    33333334445566666665555432  3 377788888776654433    3466


Q ss_pred             HHHHHHhC
Q 014502          378 LFLDHIKG  385 (423)
Q Consensus       378 ~~~~~~~~  385 (423)
                      .+.+|+..
T Consensus       340 ~lr~mvge  347 (389)
T COG2956         340 LLRDMVGE  347 (389)
T ss_pred             HHHHHHHH
Confidence            66666543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=2.1e-11  Score=112.13  Aligned_cols=279  Identities=13%  Similarity=0.064  Sum_probs=190.0

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHH
Q 014502           85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTA  162 (423)
Q Consensus        85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A  162 (423)
                      +..+|...    |.+.......+..+...+..+|...+++++|+++|+.+.+...  .-+.++|.+.+.-+-+    +-+
T Consensus       334 ~~~~A~~~----~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~  405 (638)
T KOG1126|consen  334 NCREALNL----FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA  405 (638)
T ss_pred             HHHHHHHH----HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence            45667777    4444333334456677788888888888888888888876521  1156677776654322    122


Q ss_pred             HHHHH-HHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          163 LSLFE-IMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       163 ~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      +..+. ++..  --+-...+|-++.++|.-.++.+.|++.|++....+.. ...+|+.+.+-+....++|+|...|+...
T Consensus       406 Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al  482 (638)
T KOG1126|consen  406 LSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL  482 (638)
T ss_pred             HHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence            22222 2222  11234568888888888888888888888888765322 67888888888888888888888887765


Q ss_pred             HCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 014502          242 SLGIIPSIPILE---KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE  318 (423)
Q Consensus       242 ~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  318 (423)
                      .    .|...|+   -+...|.+.++++.|.-.|+.+.+.. +-+.+....+...+-+.|+.|+|.++++++...+  |.
T Consensus       483 ~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~k  555 (638)
T KOG1126|consen  483 G----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PK  555 (638)
T ss_pred             c----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CC
Confidence            3    4444444   45566788888888888888888743 2345556667778888888888888888887643  33


Q ss_pred             hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          319 VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       319 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      ....-| .....+...++.++|+..++++++  +.|.+...+..+...|.+.|+.+ ++..|--+..
T Consensus       556 n~l~~~-~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  556 NPLCKY-HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             CchhHH-HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            332213 235556778888888888888887  66777778888888888888775 5555555544

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.7e-13  Score=85.93  Aligned_cols=49  Identities=35%  Similarity=0.613  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          212 VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       212 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5566666666666666666666666666666666666666666666654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2e-10  Score=101.39  Aligned_cols=247  Identities=9%  Similarity=0.019  Sum_probs=137.1

Q ss_pred             HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCC
Q 014502          116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGN  194 (423)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~  194 (423)
                      .++....+.+++.+-.+.+...|++-+...-+....+.-...++++|+.+|+++.+...... |..+|..++-.-.....
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            34455567777777777777888776776666666777778889999999998887322221 34566554432211111


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                          +.++.+-.-.--+--+.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.
T Consensus       315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence                1111111100001123445555555555566666666666555443 22234455555556666666666666666


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF  354 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  354 (423)
                      .++.. +-|-..|-.|..+|.-.+...-|.-.|++..+  ..|+.... |.+|-++|.+.++.++|++.|++....|-. 
T Consensus       390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRl-w~aLG~CY~kl~~~~eAiKCykrai~~~dt-  464 (559)
T KOG1155|consen  390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRL-WVALGECYEKLNRLEEAIKCYKRAILLGDT-  464 (559)
T ss_pred             HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHH-HHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence            65542 33555566666666666666666666665555  33443322 666666666666666666666665554432 


Q ss_pred             CChHhHHHHHHHHhhcccc
Q 014502          355 KSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       355 ~~~~~~~~l~~~~~~~~~~  373 (423)
                       +...+..|...|.+.++.
T Consensus       465 -e~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  465 -EGSALVRLAKLYEELKDL  482 (559)
T ss_pred             -chHHHHHHHHHHHHHHhH
Confidence             355566666666665555

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=5.3e-11  Score=109.54  Aligned_cols=282  Identities=14%  Similarity=0.089  Sum_probs=211.7

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK-PNSKTYDAFISGFSSLGNVDAMNKW  201 (423)
Q Consensus       123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~  201 (423)
                      +.++|...|+.+++.- .-+..+...+..+|...+++++|.++|+..++..... -+...|.+.+-.+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            5678899998876652 2234566778899999999999999999998743222 256678887754432    222333


Q ss_pred             H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          202 Y-AANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG  279 (423)
Q Consensus       202 ~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  279 (423)
                      + +++.+.. +-++.+|.++.++|.-+++.+.|++.|++....  .| ..++|+.+-.=+....++|.|...|+..+...
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            3 2333333 337899999999999999999999999998765  45 67899999888899999999999999887632


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh
Q 014502          280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED  359 (423)
Q Consensus       280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  359 (423)
                       +-+-..|.-+.-.|.+.++++.|+-.|+++.+  +.|..... ...+...+.+.|+.++|++++++...  ..|.+|-.
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi-~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~  559 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVI-LCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLC  559 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhH-HhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchh
Confidence             11233555577889999999999999999988  55765543 56777888999999999999999987  44556666


Q ss_pred             HHHHHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          360 VEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       360 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      --.-+..+...++. +++..+.+..+ -++-+...|..+...|.+.|+.+.|+.-|.-+.+
T Consensus       560 ~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  560 KYHRASILFSLGRYVEALQELEELKE-LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            65666666666766 56777766554 2334577799999999999999999987766543

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=3.2e-10  Score=109.71  Aligned_cols=148  Identities=8%  Similarity=-0.091  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE  238 (423)
Q Consensus       159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  238 (423)
                      +++|...+++..+.  -+-+...+..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|...++
T Consensus       320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44555555554431  0123334444444444455555555555555444321 33344444444555555555555555


Q ss_pred             HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          239 EMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       239 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      +..+..  |+ ...+..++..+...|++++|...++++.+...+.+...+..+..++...|+.++|...++++.
T Consensus       397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            544432  22 111122222333344555555555544433211122233334444445555555555554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=2.9e-10  Score=100.11  Aligned_cols=327  Identities=13%  Similarity=0.075  Sum_probs=174.9

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +...+.+|++.++-.+++...-+. ......+.+.-.+.+.|+++.|...|+...+.  .|+..+--.++-++..-|+-+
T Consensus       249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e  326 (840)
T KOG2003|consen  249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE  326 (840)
T ss_pred             ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH
Confidence            444556677765544444433222 23455666666677888888888888887765  567665555556666678888


Q ss_pred             HHHHHHHHHHhcCCCCCCHHh--------HHHHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCCHH------
Q 014502          161 TALSLFEIMVSSEEYKPNSKT--------YDAFISGFSSLGNV-----------DAMNKWYAANIAAGFSVNVQ------  215 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~--------~~~li~~~~~~~~~-----------~~a~~~~~~m~~~~~~~~~~------  215 (423)
                      +..+.|.+|....| .||..-        -..|++--.+...+           ++++-.-..+..--+.|+-.      
T Consensus       327 kmkeaf~kli~ip~-~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc  405 (840)
T KOG2003|consen  327 KMKEAFQKLIDIPG-EIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC  405 (840)
T ss_pred             HHHHHHHHHhcCCC-CCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence            88888888765222 222111        11122211111111           11111111111111112110      


Q ss_pred             -------HH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------------------
Q 014502          216 -------TY--------ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL------------------------  256 (423)
Q Consensus       216 -------~~--------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li------------------------  256 (423)
                             .|        -.-...|.+.|+++.|+++++-+.+++.+.-...-+.+-                        
T Consensus       406 le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~  485 (840)
T KOG2003|consen  406 LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI  485 (840)
T ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence                   00        011235677888888877776665433221111111000                        


Q ss_pred             ------------HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 014502          257 ------------EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF  324 (423)
Q Consensus       257 ------------~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  324 (423)
                                  +.....|++++|.+.+++.+...-......|+ +.-.+-..|++++|.+.|-++..  +-.+.... .
T Consensus       486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~ev-l  561 (840)
T KOG2003|consen  486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEV-L  561 (840)
T ss_pred             cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHH-H
Confidence                        00122467888888888877764333333443 33345667777777777766543  11111111 3


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-------------------------------
Q 014502          325 SGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-------------------------------  373 (423)
Q Consensus       325 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------  373 (423)
                      -.+...|....+..+|++++-+...  +.|++|.....|...|-+.|+.                               
T Consensus       562 ~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt  639 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT  639 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence            4455666666666666666654433  5566666666666666665543                               


Q ss_pred             ---ch-HHHHHHHHhCCCcccHHHHHHHHHHHH-hcCChhHHHHHHHHHHh
Q 014502          374 ---DR-LDLFLDHIKGSYKLRRATYDFLVAGYR-RAGLSGKLDSVINEMKF  419 (423)
Q Consensus       374 ---~~-~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~  419 (423)
                         +. ...|.+  ..-+.|+..-|..++..|. +.|++.+|++++++...
T Consensus       640 qf~ekai~y~ek--aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  640 QFSEKAINYFEK--AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence               21 222211  1235899999998886664 68999999999998754

>PF13041 PPR_2: PPR repeat family

Probab=99.44  E-value=3.5e-13  Score=84.50  Aligned_cols=49  Identities=29%  Similarity=0.508  Sum_probs=28.4

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=6.8e-10  Score=98.08  Aligned_cols=302  Identities=10%  Similarity=0.098  Sum_probs=215.8

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCHhHH-HHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHH-
Q 014502           85 SPKKAQLVLEWRLDKMLKGNESCLDEY-ACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVV-  160 (423)
Q Consensus        85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-  160 (423)
                      ..+++++-    .+.....|.|+..-+ +....+.-..+++++|+.+|+++.+...-  -|..+|..++-.--...+.. 
T Consensus       242 q~~e~~~k----~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~  317 (559)
T KOG1155|consen  242 QHEEALQK----KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY  317 (559)
T ss_pred             HHHHHHHH----HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence            56666666    455556666654444 44444455678999999999999886311  15667777665433322221 


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .|..+++ .   ++.+|  .|..++.+-|+-.++.++|..+|++.++.+.. ....|+.+.+-|....+...|++-|+..
T Consensus       318 LA~~v~~-i---dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  318 LAQNVSN-I---DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHH-h---ccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            2222221 1   33344  46777888888889999999999998887643 6778888889999999999999999988


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      .+-. +.|-..|-.+.++|...+-+.-|+-.|++..... +-|...|.+|.++|.+.++.++|...|......|-. +..
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~  467 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS  467 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence            8764 5667788899999999999999999999988853 457889999999999999999999999988876533 223


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCChHhH---HHHHHHHhhccccchHHHHHHHHhCCCcccHHH
Q 014502          321 LHFFSGIIRLYALSDRLDDVEYSVGRMGK----QGLSFKSAEDV---EMVICSYFRCAAYDRLDLFLDHIKGSYKLRRAT  393 (423)
Q Consensus       321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  393 (423)
                      .  +..|.+.|-+.++.++|...|++-.+    .|..  ++.+.   ..|..-+.+.++++.+..+......| .+..+-
T Consensus       468 ~--l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~--~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~ee  542 (559)
T KOG1155|consen  468 A--LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI--DDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEE  542 (559)
T ss_pred             H--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHH
Confidence            3  88899999999999999888876654    3433  23333   34567777888888777777776666 666666


Q ss_pred             HHHHHHHHHhcC
Q 014502          394 YDFLVAGYRRAG  405 (423)
Q Consensus       394 ~~~l~~~~~~~g  405 (423)
                      -..|++.+.+..
T Consensus       543 ak~LlReir~~~  554 (559)
T KOG1155|consen  543 AKALLREIRKIQ  554 (559)
T ss_pred             HHHHHHHHHHhc
Confidence            777777766543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.43  E-value=3.7e-09  Score=92.00  Aligned_cols=286  Identities=13%  Similarity=0.056  Sum_probs=212.4

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..|++.+|.+.    ..+..+.+..-...|..-..+..+.|+.+.+-+++.+.-+..-.++....-+........|+++
T Consensus        95 l~eG~~~qAEkl----~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~  170 (400)
T COG3071          95 LFEGDFQQAEKL----LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP  170 (400)
T ss_pred             HhcCcHHHHHHH----HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence            678999999988    4554455544556677777788888999999999998888644567777888888888899999


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a  233 (423)
                      .|..-+.++.+ . -+-+........++|.+.|++.+...++..|.+.|.--+.       .+|+.+++-....+..+.-
T Consensus       171 aA~~~v~~ll~-~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL  248 (400)
T COG3071         171 AARENVDQLLE-M-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL  248 (400)
T ss_pred             hHHHHHHHHHH-h-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            99988888876 2 2445667888889999999999999999999988865543       4788888877777777776


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      ...++..... .+-++..-.+++.-+.+.|+.++|.++.++..+.+..|...    ..-.+.+.++.+.-.+..++-.+.
T Consensus       249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh
Confidence            6666665432 24556667777888888999999999999998887766521    222445667777767776665543


Q ss_pred             -CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          314 -NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       314 -~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                       +..|    .++.+|-..|.+.+.|.+|.+.|+...+.+.   +...|+.+..++.+.|+.+ +.+...+.+.
T Consensus       324 h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         324 HPEDP----LLLSTLGRLALKNKLWGKASEALEAALKLRP---SASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             CCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence             3333    2277888889999999999999998777543   3888999999999999885 4555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=3.2e-10  Score=97.29  Aligned_cols=200  Identities=13%  Similarity=0.100  Sum_probs=129.1

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.  .+.+...+..+..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence            4556666677777777777777777766542 224556666677777777777777777766652  1334455666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence            777777777777777776654221 133455556667777777777777777766543 223456666677777777777


Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777777777665 234455555666677777777777777666654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=4.5e-10  Score=96.39  Aligned_cols=201  Identities=12%  Similarity=0.099  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      ....+..+...+...|++++|.+.+++..+.  .+.+...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~  106 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence            3556677777777778888888877777652  1334556666777777778888888887777765432 455666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      ..+...|++++|.+.+++.......+ ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence            77777788888888777776542222 23455566667777788888888777777653 23455666777777777888


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ++|...+++..+.  .|+.... +..+...+...|+.++|..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQT--YNQTAES-LWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            8887777777664  2322221 45666777777777777777776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=8e-10  Score=106.97  Aligned_cols=265  Identities=10%  Similarity=0.007  Sum_probs=186.5

Q ss_pred             cChhhHHHHHHH---H---hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh---------cCCChhHHHHHHHH
Q 014502           69 SSQFSWDALITS---L---QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSG---------KVQNVPFAMHVFTS  133 (423)
Q Consensus        69 p~~~~~~~li~~---~---~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~  133 (423)
                      .+...|...+.+   .   ..++.++|.+.    +++..+..+.+...|..+..++.         ..+++++|...+++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~----~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~  329 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKL----LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK  329 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHH----HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence            445566666666   1   22345678888    56666666667777777766543         33558999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502          134 MEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN  213 (423)
Q Consensus       134 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  213 (423)
                      ..+... -+...+..+...+...|++++|...|++..+.  -+.+...+..+...+...|++++|...+++..+.... +
T Consensus       330 Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~  405 (553)
T PRK12370        330 ATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R  405 (553)
T ss_pred             HHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence            998743 26778888889999999999999999999872  1334567888889999999999999999999987544 3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHH
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLV  291 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li  291 (423)
                      ...+..++..+...|++++|...+++..+.. .|+ ...+..+...+...|+.++|...++++...  .|+ ....+.+.
T Consensus       406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~  482 (553)
T PRK12370        406 AAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLY  482 (553)
T ss_pred             hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHH
Confidence            3333444555777899999999999987654 343 445677778888999999999999987664  334 34455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          292 KCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                      ..|...|  +.|...++.+.+.. ..+....  +  +-..|.-.|+.+.+... +++.+.+
T Consensus       483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~--~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        483 AEYCQNS--ERALPTIREFLESEQRIDNNPG--L--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHhccH--HHHHHHHHHHHHHhhHhhcCch--H--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            6667777  47777777765522 1122211  2  33446667777766665 7777654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.39  E-value=4.6e-09  Score=100.88  Aligned_cols=294  Identities=12%  Similarity=0.090  Sum_probs=183.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDS------AVFNSLI  150 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~~~~~li  150 (423)
                      +..+++-.++..+..+.+.+...+. +-+...|.+...+...|++++|...|......   -..+|.      .+--.+.
T Consensus       424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla  503 (1018)
T KOG2002|consen  424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA  503 (1018)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence            5666666666666555544444443 45666777777777777777777777766554   112222      2233344


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD  229 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  229 (423)
                      .++-..++++.|.+.|..+.+.   -|+- ..|--+....-..+...+|..++.+..... ..+...++.+.+.+.+..+
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~  579 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE  579 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence            5555566777777777777652   2442 233333323333456677777777766653 3355556666667777777


Q ss_pred             HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502          230 FDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCA------------RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       230 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  296 (423)
                      +..|.+-|+...+. ...+|.++...|.+.|..            .+..++|+++|.+.++.. +-|...-|-+.-.++.
T Consensus       580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~  658 (1018)
T KOG2002|consen  580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE  658 (1018)
T ss_pred             hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence            77777766665442 223666666666665432            234567777777777753 3456666677777788


Q ss_pred             cCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-c
Q 014502          297 LGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-D  374 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~~~~-~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~  374 (423)
                      .|++.+|..+|.++.+... .++.    |-.+..+|...|++..|+++|+...+.-...+++...+.|..++.+.|.+ +
T Consensus       659 kg~~~~A~dIFsqVrEa~~~~~dv----~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e  734 (1018)
T KOG2002|consen  659 KGRFSEARDIFSQVREATSDFEDV----WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE  734 (1018)
T ss_pred             ccCchHHHHHHHHHHHHHhhCCce----eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence            8888888888888877544 2333    55677888888888888888877766555556677778888888888877 3


Q ss_pred             hHHHHHHHH
Q 014502          375 RLDLFLDHI  383 (423)
Q Consensus       375 ~~~~~~~~~  383 (423)
                      +.+.+...+
T Consensus       735 ak~~ll~a~  743 (1018)
T KOG2002|consen  735 AKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHH
Confidence            444444433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.37  E-value=1.6e-07  Score=86.79  Aligned_cols=363  Identities=10%  Similarity=0.022  Sum_probs=269.6

Q ss_pred             HHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHh
Q 014502           43 LISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSG  119 (423)
Q Consensus        43 ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~  119 (423)
                      |.-++++.-. ..+..++....+ .++.+...|-+--.- -.+|+.+...+++...+..+...|. -+...|-.=...|-
T Consensus       412 LwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e  490 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE  490 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence            4445555542 334556666543 456666666444443 4778888888887766666666666 57888888888888


Q ss_pred             cCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKP--DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA  197 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~  197 (423)
                      +.|.+-.+..+......-|+.-  -..+|+.-...|.+.+.++-|..+|....+.  .+-+...|......--..|..++
T Consensus       491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Es  568 (913)
T KOG0495|consen  491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRES  568 (913)
T ss_pred             hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHH
Confidence            8888888888888887777643  2358888888899999999999999988862  34456677777777677888999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ...+|++....-. .....|-.....+-..|++..|..++...-+.. +-+...|-.-+..-....+++.|..+|.+...
T Consensus       569 l~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~  646 (913)
T KOG0495|consen  569 LEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS  646 (913)
T ss_pred             HHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence            9999999887743 356667777778888899999999998887754 23567788888888899999999999998887


Q ss_pred             CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502          278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA  357 (423)
Q Consensus       278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  357 (423)
                      .  .|+..+|..-+...-..++.++|.+++++..+  .-|+..-. |-.+-+.+...++.+.|.+.|..-.+  ..|..+
T Consensus       647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~i  719 (913)
T KOG0495|consen  647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTK--KCPNSI  719 (913)
T ss_pred             c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH-HHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCc
Confidence            4  47888887777777778999999999998887  34554432 77888888888899999888876554  446778


Q ss_pred             HhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          358 EDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       358 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      ..|-.+...-.+.|..-.+....+.....-+-|...|-..|..-.+.|+.++|..+..+-
T Consensus       720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA  779 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888888877744443333333333556788999999999999999988776544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.1e-08  Score=98.39  Aligned_cols=368  Identities=12%  Similarity=0.071  Sum_probs=206.3

Q ss_pred             ccHHHHHHHhcCC-chhHHHHHHHhhhccCCcCh--hhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCC-HhHHHH
Q 014502           39 SSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQ--FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESC-LDEYAC  113 (423)
Q Consensus        39 ~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~--~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~-~~~~~~  113 (423)
                      ..|.|-+.+-..+ -..++.+...+.........  .+|--+-.+ ...|++++|...|   + +-.+....+ +..+--
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY---~-~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY---M-ESLKADNDNFVLPLVG  347 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH---H-HHHccCCCCccccccc
Confidence            3333433333333 33445555555433221111  223333444 4666667666664   2 222222222 334455


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502          114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF  189 (423)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  189 (423)
                      |...+.+.|+++.+...|+...+.. +-+..+...+...|+..+    ..+.|..++.+..+.  .+.|...|-.+-..+
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL  424 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH
Confidence            6666666667777666666666542 223445555555555543    344455555544431  133444454444444


Q ss_pred             HhcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHH-------HHH--
Q 014502          190 SSLGNVDAMNKWYAA----NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---GIIPSIP-------ILE--  253 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~-------~~~--  253 (423)
                      ...+-+.. +.+|..    +...+-.+.....|.+.......|++++|...|+.....   ...+|..       -||  
T Consensus       425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla  503 (1018)
T KOG2002|consen  425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA  503 (1018)
T ss_pred             HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence            33333222 444433    223344456666777777777778888888777766543   1122221       122  


Q ss_pred             ------------------------HHHHHHHhc-------CCHHHHHHHHHHHHhCC-C---------------------
Q 014502          254 ------------------------KVLEGLCAR-------RKLDRVKSFLKFLLGGG-W---------------------  280 (423)
Q Consensus       254 ------------------------~li~~~~~~-------g~~~~a~~~~~~~~~~g-~---------------------  280 (423)
                                              ..|++|.+.       +...+|...+++..... .                     
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence                                    223333333       34445555555443211 0                     


Q ss_pred             -------------ccCHHhHHHHHHHHH------------hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502          281 -------------KINENMAQKLVKCYC------------ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD  335 (423)
Q Consensus       281 -------------~~~~~~~~~li~~~~------------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g  335 (423)
                                   .+|..+.-+|.+.|.            ..+..++|.+.|.++.+..  |...- +-|.+.-.++..|
T Consensus       584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~y-AANGIgiVLA~kg  660 (1018)
T KOG2002|consen  584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMY-AANGIGIVLAEKG  660 (1018)
T ss_pred             ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhh-hccchhhhhhhcc
Confidence                         123333333333332            1234567888888887743  43221 1567777889999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCC-cccHHHHHHHHHHHHhcCChhHHHHH
Q 014502          336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSY-KLRRATYDFLVAGYRRAGLSGKLDSV  413 (423)
Q Consensus       336 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~  413 (423)
                      ++.+|.++|.+..+....  .+++|-.+.++|..+|++ .+++.|...+..-+ .-+......|..++.+.|.+.+|.+.
T Consensus       661 ~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~  738 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA  738 (1018)
T ss_pred             CchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999987652  488999999999999999 57888887776543 34678899999999999999999988


Q ss_pred             HHHHHh
Q 014502          414 INEMKF  419 (423)
Q Consensus       414 ~~~m~~  419 (423)
                      +..-..
T Consensus       739 ll~a~~  744 (1018)
T KOG2002|consen  739 LLKARH  744 (1018)
T ss_pred             HHHHHH
Confidence            765543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=4.7e-10  Score=106.32  Aligned_cols=82  Identities=13%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             CCCCCCccccHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHh
Q 014502           31 NTNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLD  109 (423)
Q Consensus        31 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~  109 (423)
                      .|+-|+..||-+++.++|..|...+..+|.-|.-.....+...|+.++.+ -..++.+.+              ..|...
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enp--------------kep~aD   84 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENP--------------KEPLAD   84 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCC--------------CCCchh
Confidence            45566666666666666666655554466666555555555555565555 333332221              135566


Q ss_pred             HHHHHHHHHhcCCChhH
Q 014502          110 EYACLIALSGKVQNVPF  126 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~  126 (423)
                      +|..|..+|.+.||+..
T Consensus        85 tyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             HHHHHHHHHHhccchHH
Confidence            66666666666666543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=1.9e-10  Score=108.98  Aligned_cols=251  Identities=14%  Similarity=0.106  Sum_probs=154.3

Q ss_pred             HHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502           97 LDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY  175 (423)
Q Consensus        97 ~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  175 (423)
                      +..+...|+ |+..||.++|.-|+..|+++.|- +|.-|.-+..+.+...++.++.+....++.+.+.            
T Consensus        13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------   79 (1088)
T KOG4318|consen   13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------   79 (1088)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------
Confidence            556666666 88899999999999999999888 8888888877888888999999888888877765            


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCCCHHHH--------------HHHHHHHHhcCCHHHHH
Q 014502          176 KPNSKTYDAFISGFSSLGNVDA---MNKWYAANI----AAGFSVNVQTY--------------ESLIHGSLKARDFDSVD  234 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~~~~~~~--------------~~li~~~~~~g~~~~a~  234 (423)
                      .|...||+.|..+|...||+..   +.+-+....    ..|+..-...+              .+.+.-..-.|-++.++
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            4788899999999999998754   222121111    12221111111              11222233334444455


Q ss_pred             HHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          235 RFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       235 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      +++..+.... ..|...    +++-+....  ....++........-.|+..+|.+++++-...|+.+.|..++.+|++.
T Consensus       160 kll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~  233 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK  233 (1088)
T ss_pred             HHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence            4444432211 011111    233322222  222333333222211477778888888888888888888888888888


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      |+..+..-  |-.|+-+   .+...-++.+.+-|.+.|+.|+ ..++...+..+..+|.
T Consensus       234 gfpir~Hy--FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~-seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  234 GFPIRAHY--FWPLLLG---INAAQVFEFVLRGMQEKGVQPG-SETQADYVIPQLSNGQ  286 (1088)
T ss_pred             CCCccccc--chhhhhc---CccchHHHHHHHHHHHhcCCCC-cchhHHHHHhhhcchh
Confidence            77655543  3333333   6777777778888888888765 6666655555555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=8.1e-10  Score=93.39  Aligned_cols=227  Identities=12%  Similarity=0.042  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhH-HHHHHHHH
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTY-DAFISGFS  190 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~~~  190 (423)
                      +.+.++|.+.|-+.+|.+.|+.-.+.  .|-+.||-.+-++|.+..++..|+.++.+-.+.   .|-.+|| .-+.+.+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence            34455555555555555555554443  344445555555555555555555555555431   2322332 22334444


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502          191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKS  270 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  270 (423)
                      ..++.++|.++|+...+... -++....++..+|.-.++++-|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|.++.
T Consensus       302 am~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence            45555555555555554431 1344444444455555555555555555555553 334445555545555555555555


Q ss_pred             HHHHHHhCCCccCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          271 FLKFLLGGGWKINE--NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       271 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      -|.+.+..--+|+.  .+|-.+.......|++..|.+.|+-....+  ++.... +|.|.-.-.+.|++++|..++....
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ea-lnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEA-LNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHH-HHhHHHHHhhcCchHHHHHHHHHhh
Confidence            55555443333332  234444444444555555555555544422  222211 4444444455555555555555444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.25  E-value=4.4e-09  Score=97.70  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CC
Q 014502          109 DEYACLIALSGKVQNVPFAMHVFTSMEAQ-----GI-KPDSA-VFNSLICACLCSGDVVTALSLFEIMVSS----EE-YK  176 (423)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~  176 (423)
                      .+...+...|...|+++.|+.++.+..+.     |. .|... ..+.+...|...+++++|..+|+++...    .| ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45566888999999999999998887654     21 22222 3445667788888999888888887641    11 11


Q ss_pred             CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC
Q 014502          177 PN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GF-SVNV-QTYESLIHGSLKARDFDSVDRFYEEMMS---LGI  245 (423)
Q Consensus       177 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~  245 (423)
                      |. ..+++.|-..|.+.|++++|...+++..+.     |. .|.+ ..++.+...|+..+++++|..+++...+   .-+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            22 346677777888899988887777765431     11 1222 2355666778888888888888876543   112


Q ss_pred             CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 014502          246 IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G--WKINENMAQKLVKCYCELGRVDELEEQLETLT---  311 (423)
Q Consensus       246 ~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---  311 (423)
                      .++    ..+++.+...|...|++++|.+++++++..     |  ..-....++.+...|.+.+++++|.++|.+..   
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    246888888888888888888888887542     1  11123456777788888888888888887643   


Q ss_pred             -hCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          312 -KCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       312 -~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                       ..|..-...+.+|..|...|...|++++|+++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             3343332333448888888888888888888877665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1.4e-09  Score=92.04  Aligned_cols=229  Identities=8%  Similarity=0.019  Sum_probs=187.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY-ESLIHGS  224 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~  224 (423)
                      -+.+.++|.+.|.+.+|.+.|+.-.++   .|-..||-.|-+.|.+..+...|+.++.+-.+.  .|-.+|| .-+.+.+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence            467889999999999999999988763   577888988999999999999999999998876  4445554 4455777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502          225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE  304 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~  304 (423)
                      -..++.++|.++|+...+.. ..++....++...|.-.++++.|+.++++++..|+. ++..|..+.-+|.-.+++|-+.
T Consensus       301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            88899999999999987764 456777888888899999999999999999999975 7788888888888899999999


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHH
Q 014502          305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI  383 (423)
Q Consensus       305 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  383 (423)
                      .-|+.....-..|+....+|-.+-......|++.-|.+.|+-....+  +++..+++.|.-.-.+.|+.+.++.+....
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            99988877666666666567778888888999999999998887754  456888888888888888887655554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.21  E-value=8.2e-07  Score=82.34  Aligned_cols=295  Identities=9%  Similarity=-0.044  Sum_probs=129.4

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...|......--..|..+....+|++.... ++-....|-....-+-..|++..|..++.+.-+ . .+-+...|-.-+
T Consensus       549 k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~-~-~pnseeiwlaav  625 (913)
T KOG0495|consen  549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE-A-NPNSEEIWLAAV  625 (913)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-h-CCCcHHHHHHHH
Confidence            3444444444444444444444444444433 111233333444444444444444444444443 1 112333444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKL  265 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~  265 (423)
                      ..-....+++.|..+|.+....  .|+...|.--++.-.-.+..++|.+++++..+.  -|+- ..|..+-..+-+.+++
T Consensus       626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i  701 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI  701 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence            4444444444444444444432  233333433333333344444444444444332  2332 2233333344444444


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      +.|.+.|..-.+. ++.....|-.|.+.--+.|.+-.|..+++...-++  |..... |-..|..-.+.|..++|..+..
T Consensus       702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~l-wle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALL-WLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchh-HHHHHHHHHHcCCHHHHHHHHH
Confidence            4444444433332 22233344444444444444555555555444433  222211 4455555555555555555544


Q ss_pred             HHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          346 RMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      +..+.  -|.+...|..-|....+.++. .....+.     ...-|+.....+...+....++++|.+-|.+-.+
T Consensus       778 kALQe--cp~sg~LWaEaI~le~~~~rkTks~DALk-----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  778 KALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALK-----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             HHHHh--CCccchhHHHHHHhccCcccchHHHHHHH-----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44432  133344444444443333321 1111111     1234566666777777777888888888776654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2e-06  Score=76.91  Aligned_cols=200  Identities=13%  Similarity=0.051  Sum_probs=132.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCcc
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGL---CARRKLDRVKSFLKFLLGGGWKI  282 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~~~~~g~~~  282 (423)
                      |-.+|--.++.--..|+.+...++|++...+ ++|-.       +.|..+=-+|   ....+.+.+.++++..++. ++.
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH  398 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH  398 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence            3344444444445557777777777776554 23321       1111111111   2356777777777777763 555


Q ss_pred             CHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502          283 NENMAQKLVKCYC----ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE  358 (423)
Q Consensus       283 ~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  358 (423)
                      ...||..+--+|+    ++.++..|.+++-..+-  ..|...+  |..-|..-.+.++++.+..++++..+.  .|.+-.
T Consensus       399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~Kl--Fk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~  472 (677)
T KOG1915|consen  399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKL--FKGYIELELQLREFDRCRKLYEKFLEF--SPENCY  472 (677)
T ss_pred             ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhH--HHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH
Confidence            5556655544443    46777788888876654  5577766  888888889999999999999999984  466677


Q ss_pred             hHHHHHHHHhhccccchHHHHHHHHhCCCc--ccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYK--LRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       359 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      +|......-...|+.+.+..+++.....-.  .....|...|+.-...|.++.|..+++.+.+.
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            887777777788899876666666543211  12445778888888999999999999988754

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.19  E-value=1.3e-07  Score=88.98  Aligned_cols=255  Identities=13%  Similarity=0.129  Sum_probs=166.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHc----
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN-SLICACLC----  155 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~----  155 (423)
                      ...|++++|++.    ++.-....+............+.+.|+.++|..+|..+.+++  |+...|. .+..+..-    
T Consensus        15 ~e~g~~~~AL~~----L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   15 EEAGDYEEALEH----LEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHCCCHHHHHHH----HHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            467888899888    444333333445667778888888899999999999888874  4555444 44444422    


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          156 -SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV-DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       156 -~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                       ..+.+...++|+++...   -|.......+.-.+.....+ ..+..++..+...|++ +  +|+.|-..|....+.+-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence             23567778888888762   35555554444334332333 3455666677777753 3  456666666666555556


Q ss_pred             HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHh
Q 014502          234 DRFYEEMMSL----G----------IIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCE  296 (423)
Q Consensus       234 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~  296 (423)
                      .+++......    +          -.|+.  .++.-+...|...|++++|++++++.++.  .|+ +..|..-.+.|-+
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence            6666655432    1          12333  24455566777888888888888888875  344 5677777888888


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                      .|++++|.+.++.....+. -|...  =+-.+..+.++|+.++|.+++......+.
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~-~DRyi--NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDL-ADRYI--NSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             CCCHHHHHHHHHHHHhCCh-hhHHH--HHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            8888888888888887543 22332  45567777888888888888888776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=6.8e-08  Score=85.46  Aligned_cols=279  Identities=11%  Similarity=0.005  Sum_probs=186.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCC-CHhHHHH--HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNES-CLDEYAC--LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG  157 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~-~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  157 (423)
                      ++.|+.+.|++++    .-..+.... -+..-+.  ++..+.--+++..|.+.-+...... .-+......-......+|
T Consensus       430 lk~~d~~~aieil----kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng  504 (840)
T KOG2003|consen  430 LKNGDIEGAIEIL----KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG  504 (840)
T ss_pred             HhccCHHHHHHHH----HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence            5777888887774    322222221 1112222  2222223446777777666655321 112222222223334578


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY  237 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  237 (423)
                      ++++|.+.|++... ....-....||+ .-.+-..|++++|+.+|-.+...- .-+..+..-+.+.|-...+...|++++
T Consensus       505 d~dka~~~ykeal~-ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  505 DLDKAAEFYKEALN-NDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             cHHHHHHHHHHHHc-CchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            99999999998886 211111223332 234667899999999988765432 226667777788888888999999988


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502          238 EEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP  317 (423)
Q Consensus       238 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  317 (423)
                      .+.... ++-|+.....+...|-+.|+-.+|.+.+-+--.. ++.+..+...|...|....-++++...|++..-  +.|
T Consensus       582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp  657 (840)
T KOG2003|consen  582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP  657 (840)
T ss_pred             HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence            554332 3446778888899999999999998887665544 667788888888888888889999999998765  678


Q ss_pred             chHHHHHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch
Q 014502          318 EVLLHFFSGIIRLY-ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR  375 (423)
Q Consensus       318 ~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~  375 (423)
                      +..-  |..++..| .+.|++++|.+++++..+.  -|.+.+....|+..+...|..++
T Consensus       658 ~~~k--wqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl~d~  712 (840)
T KOG2003|consen  658 NQSK--WQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGLKDA  712 (840)
T ss_pred             cHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccchhH
Confidence            8877  88877655 4678999999999998763  35568888888888888776543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.15  E-value=1.1e-07  Score=88.42  Aligned_cols=28  Identities=25%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          391 RATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       391 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      ..+|.-|...|.+.|+++.|.++.+...
T Consensus       450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  450 TYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4567777777777777777777766553

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.12  E-value=1.1e-07  Score=77.08  Aligned_cols=191  Identities=15%  Similarity=0.069  Sum_probs=144.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..|++..|.+-    +++.++..+.+..+|..+...|.+.|+.+.|.+.|++....... +-.+.|.....+|..|+++
T Consensus        46 L~~gd~~~A~~n----lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~  120 (250)
T COG3063          46 LQQGDYAQAKKN----LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPE  120 (250)
T ss_pred             HHCCCHHHHHHH----HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChH
Confidence            688888888888    56677777777888888888888888888888888888775322 5567788888888888888


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      +|...|++.........-..||..+.-+..+.|+.+.|...|++-.+.... ...+.-.+.....+.|++-.|..+++..
T Consensus       121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~  199 (250)
T COG3063         121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERY  199 (250)
T ss_pred             HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHH
Confidence            888888888774333344567888888888888888888888888776533 4455666777778888888888888887


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          241 MSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       241 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      ...+. ++..+.-..|..--..|+.+.+.++=.++.+.
T Consensus       200 ~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         200 QQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             Hhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            76664 77777777777777788888877776666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.10  E-value=2.3e-07  Score=82.45  Aligned_cols=196  Identities=13%  Similarity=-0.028  Sum_probs=122.0

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFI  186 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li  186 (423)
                      ...|..+...+.+.|+.++|...|++..+... .+...|+.+...+...|++++|...|++..+   +.|+ ..+|..+.
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg  139 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRG  139 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            45577777778888888888888888877632 2567888888888888888888888888876   2343 55677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .++...|++++|.+.|+...+..  |+..........+...++.++|.+.|++..... .|+...+ .+  .....|+..
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~  213 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKIS  213 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCC
Confidence            77778888888888888877653  332212222223345667888888886654322 2332221 12  222344444


Q ss_pred             HHHHHHHHHHhC---CC--c-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          267 RVKSFLKFLLGG---GW--K-INENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       267 ~a~~~~~~~~~~---g~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      .+ +.+..+.+.   ..  . .....|..+...+.+.|++++|...|++..+.+
T Consensus       214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            43 233444321   11  1 122456677777778888888888888777643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4e-07  Score=82.92  Aligned_cols=283  Identities=12%  Similarity=0.026  Sum_probs=215.4

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      ++.....-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.  .|-...+|-++.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg  319 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG  319 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence            45555666677778899999999999988763 556677777788999999988888887888863  355667898888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcC
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI-IPSIPILEKVLEGLCARR  263 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g  263 (423)
                      -.|...|...+|.++|.+....+.. =...|-...++|.-.|+.|+|+..|...-+.  |. .|  ..|.  ---|.+.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LYl--gmey~~t~  394 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLYL--GMEYMRTN  394 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHHH--HHHHHHhc
Confidence            8888889999999999987755322 3467888889999999999999888766442  21 22  2332  23477889


Q ss_pred             CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502          264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK----CNQSPEVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      +.+.|.++|.+.... .+-|+.+.+-+.-...+.+.+.+|..+|+....    .+.....+..+++.|-.+|.+.+..++
T Consensus       395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            999999999998876 355777888887777778899999999988662    111111344458889999999999999


Q ss_pred             HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHH
Q 014502          340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYR  402 (423)
Q Consensus       340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~  402 (423)
                      |+..+++...  ..|.++.++.++.-.|...|..+ |++.|.+.+.  ..||..+-..++..+.
T Consensus       474 AI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  474 AIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            9999999887  55778999999999999999996 6888887775  4677666555555444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.09  E-value=2e-07  Score=82.80  Aligned_cols=224  Identities=12%  Similarity=0.012  Sum_probs=144.8

Q ss_pred             HhcCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502          118 SGKVQNVPFAMHVFTSMEAQG-IKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN  194 (423)
Q Consensus       118 ~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~  194 (423)
                      ....++.+.++.-+.++.... ..|+  ...|......|...|+.++|...|++..+.  -+.+...|+.+...+...|+
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~  113 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGN  113 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCC
Confidence            344566777888887777542 2222  345777777888888888888888888762  23456788888888888889


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                      +++|.+.|++..+.... +..+|..+...+...|++++|.+.|+...+..  |+..........+...++.++|...+++
T Consensus       114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~  190 (296)
T PRK11189        114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ  190 (296)
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            99988888888876433 46677778888888888898888888887653  4432222222233456778888888876


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc---hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-QSPE---VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      ..... .++...+ .+  .....|+...+ +.++.+.+.. ..+.   .....|..+...+.+.|++++|...|++..+.
T Consensus       191 ~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        191 RYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            55432 3332221 22  22335555444 3444444211 1111   11223778888888888888888888888764


Q ss_pred             C
Q 014502          351 G  351 (423)
Q Consensus       351 ~  351 (423)
                      +
T Consensus       266 ~  266 (296)
T PRK11189        266 N  266 (296)
T ss_pred             C
Confidence            3

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=2.1e-07  Score=75.38  Aligned_cols=200  Identities=16%  Similarity=0.125  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      +...|.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            4555666777777777777777777776533 56677777777777777777777777766643 223445666666667


Q ss_pred             hcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      ..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|+...+..  |+.... .-.+.....+.|++..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~-~l~~a~~~~~~~~y~~  191 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPA-LLELARLHYKAGDYAP  191 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChH-HHHHHHHHHhcccchH
Confidence            777777777777777664211 123456666666677777777777777776643  332221 4556666777777777


Q ss_pred             HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCC
Q 014502          340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSY  387 (423)
Q Consensus       340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (423)
                      |...++.....+. + +..+.-..|..-...|+.++...|...+...+
T Consensus       192 Ar~~~~~~~~~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         192 ARLYLERYQQRGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             HHHHHHHHHhccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            7777777766554 2 36666666666667777776666666665543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.08  E-value=3.9e-07  Score=85.85  Aligned_cols=260  Identities=12%  Similarity=0.110  Sum_probs=155.9

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH-HHHHh
Q 014502          113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI-SGFSS  191 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~~~  191 (423)
                      .....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.   .|+...|-..+ .+..-
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~   84 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGL   84 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhh
Confidence            3445567788888888888775543 3324456677778888888888888888888873   35555554444 44322


Q ss_pred             -----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          192 -----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       192 -----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                           ..+.+...++|+++...-  |.......+.-.+....++. .+...+..+...|+++   +|+.+-..|....+.
T Consensus        85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~  159 (517)
T PF12569_consen   85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA  159 (517)
T ss_pred             hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence                 224677778888776653  44444444433333323333 3445566667777543   556666666655555


Q ss_pred             HHHHHHHHHHHhC----C----------CccCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502          266 DRVKSFLKFLLGG----G----------WKINEN--MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR  329 (423)
Q Consensus       266 ~~a~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~  329 (423)
                      +-..+++......    +          -+|...  ++.-+...|...|++++|..++++.++.  .|+..- .|..-..
T Consensus       160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e-ly~~Kar  236 (517)
T PF12569_consen  160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE-LYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH-HHHHHHH
Confidence            5555555554422    1          123332  3344566677788888888888887773  465433 2777777


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502          330 LYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS  386 (423)
Q Consensus       330 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  386 (423)
                      .|-+.|++++|.+.++...+-+.  .|-..=+..+..+.++|+.+ +.+.+....+.+
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            78888888888888888777443  22222244566677777775 344443333433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.2e-06  Score=78.67  Aligned_cols=192  Identities=8%  Similarity=0.025  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  296 (423)
                      |--+...|....+.++.++.|++..+.+ +-+..+|..=.....-.+++++|..=|++.+... +-+...|-.+..+.-+
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR  440 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence            5555566777777777777777766544 3344555555555666677777777777776642 1233455555555566


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------ChHhH--HHHHHHHh
Q 014502          297 LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFK------SAEDV--EMVICSYF  368 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~--~~l~~~~~  368 (423)
                      .++++++...|++.+++-  |+.... |+.....+...+++++|.+.|+..++  +.|.      ++..+  ..++..--
T Consensus       441 ~~k~~~~m~~Fee~kkkF--P~~~Ev-y~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qw  515 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKKF--PNCPEV-YNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQW  515 (606)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCchH-HHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhch
Confidence            777888888888777643  433322 77777888888888888888877765  2222      11111  11111111


Q ss_pred             hcccc-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          369 RCAAY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       369 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      + ++. .+.+++.+.++.. +-....|..|...-.+.|+.++|+++|++-
T Consensus       516 k-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  516 K-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             h-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            1 333 2445554444321 222456899999999999999999999874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.03  E-value=5.1e-06  Score=76.40  Aligned_cols=155  Identities=9%  Similarity=0.012  Sum_probs=78.8

Q ss_pred             HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHh
Q 014502          117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL----CSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSS  191 (423)
Q Consensus       117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~  191 (423)
                      .+...|++++|.+.+++..+.. +.+...+.. ...+.    ..+..+.+.+.+...   ....|+. .....+...+..
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHH
Confidence            3445666677777666666542 223333332 11222    233344444444331   1122322 233344455666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSI--PILEKVLEGLCARRKLDRV  268 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a  268 (423)
                      .|++++|.+.+++..+.... +...+..+...+...|++++|...+++...... .|+.  ..|..+...+...|++++|
T Consensus       127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            66666666666666665422 445556666666666666666666666554321 1222  2234455556666666666


Q ss_pred             HHHHHHHHh
Q 014502          269 KSFLKFLLG  277 (423)
Q Consensus       269 ~~~~~~~~~  277 (423)
                      ..++++...
T Consensus       206 ~~~~~~~~~  214 (355)
T cd05804         206 LAIYDTHIA  214 (355)
T ss_pred             HHHHHHHhc
Confidence            666666543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=2.1e-06  Score=77.09  Aligned_cols=237  Identities=10%  Similarity=0.025  Sum_probs=178.0

Q ss_pred             HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 014502          117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD  196 (423)
Q Consensus       117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~  196 (423)
                      .+.-.|+.-.|..-|+........+ ...|--+...|...++.++....|++..+..  +.|..+|..=.+...-.++++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence            3445688889999999988864332 2237777888999999999999999988633  345667777777788889999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL  276 (423)
Q Consensus       197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  276 (423)
                      +|..=|++....... +...|--+-.+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...
T Consensus       412 ~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  412 EAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            999999998877543 6777877778888999999999999998775 34456788989999999999999999999887


Q ss_pred             hCCCccC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          277 GGGWKIN---------ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       277 ~~g~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      +.  .|+         +.+.-+++-.- =.+++..|..++++..+  +.|..... |..|...-.+.|+.++|+++|++-
T Consensus       490 ~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A-~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  490 EL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQA-YETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             hh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHH-HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            63  232         22222222222 24889999999999988  44554443 889999999999999999999987


Q ss_pred             HhCCCCCCChHhHHHHHHHHhhc
Q 014502          348 GKQGLSFKSAEDVEMVICSYFRC  370 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~  370 (423)
                      ..  .    ..+-.-++++|.-+
T Consensus       564 a~--l----Art~~E~~~a~s~a  580 (606)
T KOG0547|consen  564 AQ--L----ARTESEMVHAYSLA  580 (606)
T ss_pred             HH--H----HHhHHHHHHHHHHH
Confidence            65  2    44445555555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.01  E-value=2.9e-06  Score=78.05  Aligned_cols=261  Identities=12%  Similarity=-0.004  Sum_probs=163.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHH---HHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcc
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC---LIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCS  156 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~  156 (423)
                      ...|++++|.+.+    ++.....+.|...+..   ........+..+.+.+.++.  ..+..|+ ......+...+...
T Consensus        54 ~~~g~~~~A~~~~----~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          54 WIAGDLPKALALL----EQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHcCCHHHHHHHH----HHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence            6889999999994    5555555556655552   22222335566666666655  1222333 34555667788999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHH
Q 014502          157 GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNV--QTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       157 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a  233 (423)
                      |++++|...+++..+.  .+.+...+..+...+...|++++|..++++...... .|+.  ..|..+...+...|++++|
T Consensus       128 G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         128 GQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             CCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999872  244566788888999999999999999999887532 2232  3455788889999999999


Q ss_pred             HHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--ccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          234 DRFYEEMMSLGI-IPSIPIL-E--KVLEGLCARRKLDRVKSF--LKFLLGGGW--KINENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       234 ~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      ..+|++...... .+..... +  .++.-+...|..+.+.++  .........  ............++...|+.+.|..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~  285 (355)
T cd05804         206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK  285 (355)
T ss_pred             HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence            999999864332 1222222 1  223333444544433333  111111111  1111222346667788999999999


Q ss_pred             HHHHHHhCCCCC--c----hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          306 QLETLTKCNQSP--E----VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       306 ~~~~~~~~~~~p--~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .++.+.......  .    ..+...-...-.+...|+.++|.+.+.....
T Consensus       286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999886633220  0    1111122233445688999999998888765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=3.7e-07  Score=76.71  Aligned_cols=326  Identities=12%  Similarity=0.125  Sum_probs=212.5

Q ss_pred             hHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 014502           73 SWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL-I  150 (423)
Q Consensus        73 ~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i  150 (423)
                      -+++.|.. .+..++.+|.+++.    .-.+..+.+....+.|..+|-...++..|-..++++...  -|...-|... .
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~----s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A   85 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLG----SELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA   85 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHH----HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence            35566666 67888999999953    333344457788889999999999999999999999875  4555555432 3


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG--FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR  228 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  228 (423)
                      ..+-+.+.+.+|+++...|..    .|+...-..-+.+  ....+++..+..++++....|   +..+.+.......+.|
T Consensus        86 QSLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence            566778999999999998875    2443322222222  235688888888888876433   3444455555567899


Q ss_pred             CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-------------CHH--------h
Q 014502          229 DFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI-------------NEN--------M  286 (423)
Q Consensus       229 ~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-------------~~~--------~  286 (423)
                      +++.|.+-|+...+- |..| ...|+..+ +..+.|+++.|++...++++.|++.             |..        .
T Consensus       159 qyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh  236 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH  236 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence            999999999988764 5544 56777666 4456789999999999998877531             211        1


Q ss_pred             HHHHHH-------HHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502          287 AQKLVK-------CYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE  358 (423)
Q Consensus       287 ~~~li~-------~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  358 (423)
                      -+.++.       .+.+.|+++.|.+.+-.|..+. ...|+.|. .|..+ . -..+++.+..+-+.-+.+.  .|-.+.
T Consensus       237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL-HN~Al-~-n~~~~p~~g~~KLqFLL~~--nPfP~E  311 (459)
T KOG4340|consen  237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL-HNQAL-M-NMDARPTEGFEKLQFLLQQ--NPFPPE  311 (459)
T ss_pred             HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh-hHHHH-h-cccCCccccHHHHHHHHhc--CCCChH
Confidence            222333       4467889999998888886432 23344442 23221 1 1244555555555555543  343489


Q ss_pred             hHHHHHHHHhhccccc-hHHHHHHHHhCCCc-ccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          359 DVEMVICSYFRCAAYD-RLDLFLDHIKGSYK-LRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       359 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      +|..++-.||++.-++ +++++.+....-+. .+...|+.+=....-.-..++|++-++.+.
T Consensus       312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999998886 56766554332222 345556544333334567788887776653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7.4e-07  Score=81.27  Aligned_cols=266  Identities=9%  Similarity=0.001  Sum_probs=205.7

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL  220 (423)
Q Consensus       141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  220 (423)
                      -+......-.+-+-..+++.+..++++...+.  .++....+..=|.++.+.|+..+-..+=.+|.+.-+. ...+|-++
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV  318 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV  318 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence            35555666667777889999999999999873  4566667777788999999998888888888877433 67899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHHhHHHHHHHHHhc
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINENMAQKLVKCYCEL  297 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~  297 (423)
                      ..-|.-.|+.++|.+.|.+....  .|. ...|-....+|+-.|+.|+|...+...-+.  |.. -+..|  +.--|.+.
T Consensus       319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t  393 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRT  393 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHh
Confidence            99898899999999999877543  333 457888899999999999999998887654  221 22334  34467889


Q ss_pred             CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCChHhHHHHHHHHhhccc
Q 014502          298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ----G-LSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      ++++.|.+.|.+...  +.|+.... .+-+--.....+.+.+|...|+.....    + -.+....+++.|.++|.+.+.
T Consensus       394 ~n~kLAe~Ff~~A~a--i~P~Dplv-~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALA--IAPSDPLV-LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             ccHHHHHHHHHHHHh--cCCCcchh-hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            999999999998876  66765543 677766677788999999999887631    1 011124457889999999999


Q ss_pred             cc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          373 YD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       373 ~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      .+ ++..+++.+.. .+.|..+|.++.-.|...|+++.|.+.|.+-.
T Consensus       471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            95 67777777654 35689999999999999999999999998754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1e-05  Score=71.33  Aligned_cols=31  Identities=13%  Similarity=-0.155  Sum_probs=18.3

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEA  136 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  136 (423)
                      .|+.....+.+.+...|+.++|+..|++...
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~  260 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC  260 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence            4555556666666666666666666655544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.95  E-value=3e-05  Score=73.63  Aligned_cols=126  Identities=12%  Similarity=0.053  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS  366 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~  366 (423)
                      |......+.+.+..++|...+.+..+  +.|..... |...-..+...|++++|.+.|.....  +.|+++.+.+++...
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~-~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~  727 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV-YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH-HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence            33445556666777777767766665  33433322 66666777888999999999998877  778899999999999


Q ss_pred             Hhhccccc-hHH--HHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          367 YFRCAAYD-RLD--LFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       367 ~~~~~~~~-~~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      +.+.|+.. +..  .+.++++-+ +.++..|..+...+.+.|+.++|.+.|..-.
T Consensus       728 lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99999774 333  666776653 5579999999999999999999999887643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=3.2e-05  Score=69.50  Aligned_cols=324  Identities=11%  Similarity=0.079  Sum_probs=194.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      .+++++..|..+    |+..+.....+...|-.-+.+=.+++.+..|..+|++.... ++.-...|...+..=-..|++.
T Consensus        84 esq~e~~RARSv----~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~  158 (677)
T KOG1915|consen   84 ESQKEIQRARSV----FERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIA  158 (677)
T ss_pred             HhHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccH
Confidence            466777788888    45555555567777877888888888888888888887764 1222235556666566678888


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .|.++|+.-.+   ..|+...|.+.|+.-.+-+.++.|..+|++..-.  .|++.+|-....-=-++|+...|..+|+..
T Consensus       159 gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  159 GARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             HHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            88888887765   4688888888888888888888888888887753  577777777777667777777777777665


Q ss_pred             HHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------------
Q 014502          241 MSL-GI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG----------------------------------------  278 (423)
Q Consensus       241 ~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------------  278 (423)
                      .+. |- ..+...|.+...-=.+...++.|.-+|+-.++.                                        
T Consensus       234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            542 10 011112222222222333444444444433321                                        


Q ss_pred             ---CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH--------HHHHHHHhcCChhHHHHHHHHH
Q 014502          279 ---GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS--------GIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       279 ---g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~--------~li~~~~~~g~~~~a~~~~~~m  347 (423)
                         .-+.|-.+|--.++.-...|+.+...++++..+.+ +.|...-..|.        ..+-.-....+++.+.++|+..
T Consensus       314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence               01233445555566666677777778888777663 23322111111        1122223556777777777777


Q ss_pred             HhCCCCCCChHhHHHHHHHHh----hccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          348 GKQGLSFKSAEDVEMVICSYF----RCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+  +.|...-+|..+=-.|+    ++.+.. +-+++-..+  |.-|-..+|...|..-.+.+++|.+.+++++..+
T Consensus       393 l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle  465 (677)
T KOG1915|consen  393 LD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE  465 (677)
T ss_pred             Hh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            66  55544455543322222    233332 233333322  4567777777777777777777777777777654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.91  E-value=9.7e-08  Score=83.73  Aligned_cols=242  Identities=10%  Similarity=0.037  Sum_probs=110.2

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN  199 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  199 (423)
                      -.|++..++.-.+ .....-+.+......+.+++...|+++.+   +.++..  +-.|.......+...+...++-+.++
T Consensus        13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~--~~~~~l~av~~la~y~~~~~~~e~~l   86 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKK--SSSPELQAVRLLAEYLSSPSDKESAL   86 (290)
T ss_dssp             CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred             HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhcc--CCChhHHHHHHHHHHHhCccchHHHH
Confidence            3455555554443 11111111233344455666666665533   233332  11444444444443333323333343


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          200 KWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       200 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      .-+++.......+ +..........+...|++++|++++..    +  .+.......+..|.+.++++.|.+.++.|.+.
T Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~  160 (290)
T PF04733_consen   87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI  160 (290)
T ss_dssp             HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3333332222121 222112222344455666666665532    1  33455555666666666666666666666653


Q ss_pred             CCccCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 014502          279 GWKINENMAQKLVKCYC----ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSF  354 (423)
Q Consensus       279 g~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  354 (423)
                        ..|.. ...+..++.    -.+++.+|..+|+++... ..++..+  .+.+..+....|++++|.+++.+..+  ..|
T Consensus       161 --~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~--lng~A~~~l~~~~~~eAe~~L~~al~--~~~  232 (290)
T PF04733_consen  161 --DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKL--LNGLAVCHLQLGHYEEAEELLEEALE--KDP  232 (290)
T ss_dssp             --SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHH--HHHHHHHHHHCT-HHHHHHHHHHHCC--C-C
T ss_pred             --CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHH--hcc
Confidence              23332 222333222    223466666666666543 2233333  56666666666667666666666554  334


Q ss_pred             CChHhHHHHHHHHhhcccc-chHHHHHH
Q 014502          355 KSAEDVEMVICSYFRCAAY-DRLDLFLD  381 (423)
Q Consensus       355 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~  381 (423)
                      .++++...++.+....|+. +..+.+..
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            5566666666666666655 44443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12854 PPR_1: PPR repeat

Probab=98.90  E-value=2.3e-09  Score=60.34  Aligned_cols=32  Identities=38%  Similarity=0.580  Sum_probs=15.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       209 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      |+.||..|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.88  E-value=7.1e-05  Score=69.83  Aligned_cols=334  Identities=15%  Similarity=0.121  Sum_probs=198.6

Q ss_pred             ChhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502           70 SQFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS  148 (423)
Q Consensus        70 ~~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  148 (423)
                      +.+.|.++--.. ...++++|++.    +......+..|...|.-+.-.-++-|+++.......++.+.. +.....|..
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKc----y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~  148 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKC----YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIG  148 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHH----HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHH
Confidence            345555443333 34567777777    445555566677777776666667777777777766666642 224557788


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI------SGFSSLGNVDAMNKWYAANIAAGFSVNVQTY-ESLI  221 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li  221 (423)
                      +..++.-.|++..|..++++..+...-.|+...|....      ....+.|..++|.+.+..-...-  .|-..+ .+-.
T Consensus       149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka  226 (700)
T KOG1156|consen  149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKA  226 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHH
Confidence            88888888999999999998887433356666654333      33456677777777766544321  122222 2334


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-HHHHHHHHHH-------------------------
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE-GLCARRK-LDRVKSFLKF-------------------------  274 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~-~~~a~~~~~~-------------------------  274 (423)
                      ..+.+.+++++|..+|..+....  ||...|...+. ++.+..+ .+....+|..                         
T Consensus       227 ~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~  304 (700)
T KOG1156|consen  227 DLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK  304 (700)
T ss_pred             HHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence            56778899999999999988764  77666554443 3332222 2222233333                         


Q ss_pred             ---------HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH--------hCC----------CCCchHHHHHHHH
Q 014502          275 ---------LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT--------KCN----------QSPEVLLHFFSGI  327 (423)
Q Consensus       275 ---------~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------~~~----------~~p~~~~~~~~~l  327 (423)
                               +.+.|+++   ++..+...|-.....+    +++++.        ..|          -.|....-++-.+
T Consensus       305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l  377 (700)
T KOG1156|consen  305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL  377 (700)
T ss_pred             HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence                     33344332   2222222222111111    222221        111          1333333124567


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCCh
Q 014502          328 IRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLS  407 (423)
Q Consensus       328 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  407 (423)
                      +..|-..|+++.|...++...+.  .|.-+..|-.=...+...|+.+.+..+.+....-..||...=..-..-..++++.
T Consensus       378 aqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  378 AQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             HHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence            88899999999999999988763  3444555555578888999986544444444444466766554566666788999


Q ss_pred             hHHHHHHHHHHhcC
Q 014502          408 GKLDSVINEMKFAE  421 (423)
Q Consensus       408 ~~a~~~~~~m~~~g  421 (423)
                      ++|.++....-..|
T Consensus       456 ~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  456 EEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999888876665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.9e-05  Score=69.66  Aligned_cols=278  Identities=13%  Similarity=0.032  Sum_probs=194.8

Q ss_pred             cCCcC-hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH
Q 014502           66 AFNSS-QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS  143 (423)
Q Consensus        66 g~~p~-~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  143 (423)
                      ..-|+ +.....+-.. +..|+.++|...    |++.+..++-+...-..-.-.+.+.|+++....+-..+.... +-+.
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~----Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta  300 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDI----FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA  300 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHH----HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch
Confidence            33444 4444555555 689999999999    566555554333333333444567888888888777776541 1244


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG  223 (423)
Q Consensus       144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  223 (423)
                      ..|-.-........++..|+.+-++..+..  +.+...|-.-...+...+++++|.-.|....... +.+...|..|+.+
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS  377 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence            455555555667789999999998887621  2233445444477888999999999999877653 2378999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCH
Q 014502          224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL-EGL-CARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRV  300 (423)
Q Consensus       224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~-~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~  300 (423)
                      |...|.+.+|.-+-+...+. ++.+..+.+.+- ..| ....--++|.++++.-+..  .|+ ....+.+...+...|..
T Consensus       378 YLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~  454 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPT  454 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCcc
Confidence            99999999998766654432 123444554442 222 2234457899999888774  455 33566777888999999


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV  360 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  360 (423)
                      +++..+++....  ..||...  .+.|.+.+...+.+++|++.|....+  +.|.+..+.
T Consensus       455 ~D~i~LLe~~L~--~~~D~~L--H~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl  508 (564)
T KOG1174|consen  455 KDIIKLLEKHLI--IFPDVNL--HNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTL  508 (564)
T ss_pred             chHHHHHHHHHh--hccccHH--HHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHH
Confidence            999999999887  5688877  89999999999999999999999887  455544433

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=3.9e-09  Score=59.42  Aligned_cols=32  Identities=38%  Similarity=0.591  Sum_probs=15.3

Q ss_pred             CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014502          138 GIKPDSAVFNSLICACLCSGDVVTALSLFEIM  169 (423)
Q Consensus       138 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  169 (423)
                      |+.||..+||++|++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44444444444444444444444444444444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.85  E-value=4.5e-05  Score=71.10  Aligned_cols=221  Identities=11%  Similarity=-0.009  Sum_probs=131.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +.-|+.++|.+.    ...-....+.+.+.|+.+.-.+...+++++|.+.|......+- -|..+|.-+-..-++.|+++
T Consensus        52 ~~lg~~~ea~~~----vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   52 NCLGKKEEAYEL----VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             hcccchHHHHHH----HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhh
Confidence            466777777777    4445555556677777777777777778888887777776542 25666666666666677777


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH------HHHhcCCHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG-FSVNVQTYESLIH------GSLKARDFDSV  233 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~------~~~~~g~~~~a  233 (423)
                      .....-.+..+.  .+-....|..+..++.-.|+...|..+.++..+.. -.|+...|.-...      ...+.|.+++|
T Consensus       127 ~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a  204 (700)
T KOG1156|consen  127 GYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA  204 (700)
T ss_pred             hHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            776666666652  12233456666667777777788887777777654 2455555544332      23455666666


Q ss_pred             HHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-HHHHHHHhcCCHHHHH-HHHHHH
Q 014502          234 DRFYEEMMSLGIIPSIPI-LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-KLVKCYCELGRVDELE-EQLETL  310 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~a~-~~~~~~  310 (423)
                      .+-+.+-...  ..|... -..-...+.+.+++++|..++..++..  .||..-|. .+..++.+..+.-++. .+|...
T Consensus       205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l  280 (700)
T KOG1156|consen  205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL  280 (700)
T ss_pred             HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6655443221  223222 333445566778888888888887775  35554443 3444444333333333 555544


Q ss_pred             Hh
Q 014502          311 TK  312 (423)
Q Consensus       311 ~~  312 (423)
                      .+
T Consensus       281 s~  282 (700)
T KOG1156|consen  281 SE  282 (700)
T ss_pred             hh
Confidence            43

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=0.0001  Score=68.03  Aligned_cols=360  Identities=10%  Similarity=0.015  Sum_probs=203.9

Q ss_pred             HHHHHHHhcCCc----hhHHHHHHHhhhccCCcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHH
Q 014502           41 NPLISRLLQVPV----SQIKTTLDSVDIFAFNSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIA  116 (423)
Q Consensus        41 ~~ll~~l~~~~~----~~~~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~  116 (423)
                      ..++..+-+.+.    .++......+...++.+....+..++.-.+.+++++|+.+.    +.-......+...   +=.
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i----kk~~~~~~~~~~~---fEK   85 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI----KKNGALLVINSFF---FEK   85 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH----Hhcchhhhcchhh---HHH
Confidence            456666655552    23466666667666555555566666668999999999774    3211111112222   233


Q ss_pred             HHh--cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-------------------
Q 014502          117 LSG--KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-------------------  175 (423)
Q Consensus       117 ~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------------  175 (423)
                      +||  +.+..++|...++.....    |..+...-...+.+.|++++|+++|+.+.+. +.                   
T Consensus        86 AYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~  160 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQ  160 (652)
T ss_pred             HHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhh
Confidence            444  788999999998833221    3447777778888999999999999999652 11                   


Q ss_pred             ---------CCCHHhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCC------CCCHHHH--------HHHHHHHHhcCC
Q 014502          176 ---------KPNSKTYDAFIS---GFSSLGNVDAMNKWYAANIAAGF------SVNVQTY--------ESLIHGSLKARD  229 (423)
Q Consensus       176 ---------~p~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~--------~~li~~~~~~g~  229 (423)
                               .| ..+|..+.+   .+...|++.+|+++++...+.+.      .-+..-+        --+.-.+...|+
T Consensus       161 ~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  161 VQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             HHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                     11 224444442   34567888899998887732210      0011111        112234567788


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHH--HHHHH------------HHHH----------------
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILEKVLE---GLCARRKLDR--VKSFL------------KFLL----------------  276 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~g~~~~--a~~~~------------~~~~----------------  276 (423)
                      .++|.++|....... .+|........+   ++..-.++-.  ++..+            ..+.                
T Consensus       240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888887765 344322211111   1111111000  00000            0000                


Q ss_pred             -----------hCCCccC--HHhHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502          277 -----------GGGWKIN--ENMAQKLVKCYCE--LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE  341 (423)
Q Consensus       277 -----------~~g~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~  341 (423)
                                 ....+++  ...+..++..+.+  ......|..++...-+..  |.....+--.++......|+++.|.
T Consensus       319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~  396 (652)
T KOG2376|consen  319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVAL  396 (652)
T ss_pred             HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHH
Confidence                       0011111  1223333332222  123555666666655533  4443222567788889999999999


Q ss_pred             HHHH--------HHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC------CCcccHHHHHHHHHHHHhcCC
Q 014502          342 YSVG--------RMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG------SYKLRRATYDFLVAGYRRAGL  406 (423)
Q Consensus       342 ~~~~--------~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~  406 (423)
                      +++.        .+.+.+..   |.++..+...+.+.++.+ +..++.+.+.-      +-..-..++.-+...-.+.|+
T Consensus       397 ~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~  473 (652)
T KOG2376|consen  397 EILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN  473 (652)
T ss_pred             HHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence            9998        66665543   788888888888877764 45555544321      111123445556666678899


Q ss_pred             hhHHHHHHHHHHh
Q 014502          407 SGKLDSVINEMKF  419 (423)
Q Consensus       407 ~~~a~~~~~~m~~  419 (423)
                      -++|..+++++.+
T Consensus       474 ~~ea~s~leel~k  486 (652)
T KOG2376|consen  474 EEEASSLLEELVK  486 (652)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.80  E-value=6e-06  Score=82.92  Aligned_cols=246  Identities=12%  Similarity=0.066  Sum_probs=183.6

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHH
Q 014502          125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLGNVDAMNKW  201 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~  201 (423)
                      +.|.++-..++..  +-+...|-..|.-....++.++|.++.++....-++...   ...|.++++.-...|.-+...++
T Consensus      1442 esaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             cCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            3444444444432  224568999999999999999999999998863222222   34688888888888888999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 014502          202 YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK  281 (423)
Q Consensus       202 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~  281 (423)
                      |++..+.-  -....|..|...|.+.+++++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.+.++. ++
T Consensus      1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP 1595 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP 1595 (1710)
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc
Confidence            99998752  235568899999999999999999999997752 356678999999999999999999999999875 22


Q ss_pred             c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh
Q 014502          282 I--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED  359 (423)
Q Consensus       282 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  359 (423)
                      -  ........+..-.+.|+.+.+..+|+......  |-. +.+|+..++.-.++|+.+.+..+|++....++.+.....
T Consensus      1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred             hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence            2  23355566677788999999999999988744  322 223999999999999999999999999998887654433


Q ss_pred             H-HHHHHHHhhccccchHHHH
Q 014502          360 V-EMVICSYFRCAAYDRLDLF  379 (423)
Q Consensus       360 ~-~~l~~~~~~~~~~~~~~~~  379 (423)
                      + ...+..-.+.|+-+.++.+
T Consensus      1673 ffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHHHHhcCchhhHHHH
Confidence            3 4444444455655444433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.80  E-value=0.00011  Score=68.49  Aligned_cols=302  Identities=9%  Similarity=0.018  Sum_probs=182.8

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------C------CHHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS----------------G------DVVTALSL  165 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~  165 (423)
                      ...|++|.+.|.+.|.+++|.++|++....  ..+..-|+.+.++|+.-                |      +++-...-
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            467999999999999999999999998765  23444555555555421                1      12223333


Q ss_pred             HHHHHhcCC----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCC
Q 014502          166 FEIMVSSEE----------YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV------NVQTYESLIHGSLKARD  229 (423)
Q Consensus       166 ~~~m~~~~~----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~  229 (423)
                      |+.+.....          -+-++.+|..-+..  ..|+..+-...|.+..+. +.|      -...|..+...|-..|+
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~  402 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD  402 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence            444333111          11223334333322  245566677777776654 222      23457788888999999


Q ss_pred             HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------Ccc------CHHhHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGGG-----------WKI------NENMAQK  289 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-----------~~~------~~~~~~~  289 (423)
                      .+.|..+|++..+...+--   ..+|......=.+..+++.|.++.+.....-           .++      +...|+.
T Consensus       403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~  482 (835)
T KOG2047|consen  403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM  482 (835)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence            9999999998876432211   3456666666677888999999888765321           111      2235566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh
Q 014502          290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR  369 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~  369 (423)
                      .++.--..|-++....+++.+.+..+.......-|..+   +-.+..++++.+++++-+.--.-|.-.+.|+..+.-+.+
T Consensus       483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~  559 (835)
T KOG2047|consen  483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK  559 (835)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence            66666678888999999999988665433332113333   345667888888887765533233445666666555544


Q ss_pred             c-c--ccchHHHHHHHHhCCCcccHH--HHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          370 C-A--AYDRLDLFLDHIKGSYKLRRA--TYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       370 ~-~--~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      . |  ..|.+..+++....|.+|...  .|-.....=-+.|....|+.++++.
T Consensus       560 rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  560 RYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             HhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2 2  235555555555557777532  2333333334568888888888874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.78  E-value=1.1e-05  Score=81.06  Aligned_cols=239  Identities=9%  Similarity=0.099  Sum_probs=192.7

Q ss_pred             HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502           97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-----DSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      |++.....+.....|-.-|....+.+++++|.+++++.... +.+     -...|.++++.-..-|.-+...++|++..+
T Consensus      1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            35555566667778999999999999999999999998764 222     234788888888888988999999999998


Q ss_pred             cCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 014502          172 SEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--  248 (423)
Q Consensus       172 ~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--  248 (423)
                       .   -| ...|..|...|.+.+..++|.++++.|.+.= .-....|...+..+.+..+-+.|..++.+..+.  -|.  
T Consensus      1526 -y---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1526 -Y---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred             -h---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence             3   33 3468889999999999999999999999862 247788999999999999999999999988764  343  


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 014502          249 -IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGI  327 (423)
Q Consensus       249 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~l  327 (423)
                       .....-.+..-.+.|+.+.+..+|+..+..- +--...|+..+++-.+.|+.+.++.+|+.+...++.|...-.+|...
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence             2334445555678899999999999998863 34566899999999999999999999999999999888776668888


Q ss_pred             HHHHHhcCChhHHHHHH
Q 014502          328 IRLYALSDRLDDVEYSV  344 (423)
Q Consensus       328 i~~~~~~g~~~~a~~~~  344 (423)
                      +..--..|+-..++.+=
T Consensus      1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             HHHHHhcCchhhHHHHH
Confidence            87777777766555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=9.8e-07  Score=77.48  Aligned_cols=253  Identities=11%  Similarity=0.091  Sum_probs=161.9

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD  229 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  229 (423)
                      ++-+.-.|++..++.-.+ ... ..-..+......+.+++...|+.+.++   .++.... .|.......+...+...++
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred             HHHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence            345566799999887666 332 111122334455678999999987543   4444443 6676666555544443355


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILE-KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE  308 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  308 (423)
                      -+.++.-+++....+..++..++. .....+...|++++|+++++..      .+.......+..|.+.++++.|.+.++
T Consensus        82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556655555544444333333333 3334566789999999887642      356677778999999999999999999


Q ss_pred             HHHhCCCCCchH-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC
Q 014502          309 TLTKCNQSPEVL-LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS  386 (423)
Q Consensus       309 ~~~~~~~~p~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~  386 (423)
                      .|.+.+  .|.. +.+..+.+..+.-.+.+.+|..+|+++.+. . ++++...+.+..++...|+++ |.+.+.+.+...
T Consensus       156 ~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  156 NMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             HHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             HHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            998753  3332 323444444444455799999999999764 2 346889999999999999995 666776665432


Q ss_pred             CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 014502          387 YKLRRATYDFLVAGYRRAGLS-GKLDSVINEMKF  419 (423)
Q Consensus       387 ~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~  419 (423)
                       +-++.+..-++-+....|+. +.+.+++.+++.
T Consensus       232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence             44677777788888888888 667788887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.74  E-value=0.00011  Score=63.36  Aligned_cols=304  Identities=10%  Similarity=0.020  Sum_probs=187.2

Q ss_pred             hhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC
Q 014502           63 DIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIK  140 (423)
Q Consensus        63 ~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  140 (423)
                      ...+..|..+.=..=+..  +..|.+.+|+..    |....+.++.+-.++-.-...|.-.|+-..|+.=|.+..+.  +
T Consensus        29 a~~~~~~advekhlElGk~lla~~Q~sDALt~----yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--K  102 (504)
T KOG0624|consen   29 AESTASPADVEKHLELGKELLARGQLSDALTH----YHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--K  102 (504)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--C
Confidence            444555443332222332  688888899888    45555555444445555556677777777788878777775  5


Q ss_pred             CCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH----------------hHHHHHHHHHhcCCHHHHHHHHH
Q 014502          141 PDSAV-FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK----------------TYDAFISGFSSLGNVDAMNKWYA  203 (423)
Q Consensus       141 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----------------~~~~li~~~~~~~~~~~a~~~~~  203 (423)
                      ||-.. --.-...+.+.|.+++|..=|+...+.   .|+..                .....+..+...|+...|+....
T Consensus       103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            66432 222334567888999998888888763   23211                12233455666788888888888


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502          204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN  283 (423)
Q Consensus       204 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~  283 (423)
                      .+.+.. ..|...|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+..+..+++.++  +.||
T Consensus       180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd  255 (504)
T KOG0624|consen  180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD  255 (504)
T ss_pred             HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence            888764 3477777777888888898888887665554433 23344555566667788888888888888887  4465


Q ss_pred             HHhHHHH-------H------HHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          284 ENMAQKL-------V------KCYCELGRVDELEEQLETLTKCNQS-PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       284 ~~~~~~l-------i------~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ...+-..       .      ....+.+++.++.+..+...+.... +......+..+..+|...|++.+|++.-.+..+
T Consensus       256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~  335 (504)
T KOG0624|consen  256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD  335 (504)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence            4322211       1      1223455666666666666664432 212212245566777788888888888888876


Q ss_pred             CCCCCCChHhHHHHHHHHhhccccc-hHHHHHH
Q 014502          350 QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLD  381 (423)
Q Consensus       350 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~  381 (423)
                        +.|++..++.--..+|.-..+++ ++.-|..
T Consensus       336 --~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~  366 (504)
T KOG0624|consen  336 --IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEK  366 (504)
T ss_pred             --cCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              55666666655555555444442 3444433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.69  E-value=0.00027  Score=64.77  Aligned_cols=150  Identities=7%  Similarity=-0.028  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHhC-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502          265 LDRVKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS  343 (423)
Q Consensus       265 ~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~  343 (423)
                      .+.....+++++.. ..+|+ -+|-.+++.-.+..-++.|..+|.+..+.+..+.. ..++++++..||. ++.+-|.++
T Consensus       347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh-VfVa~A~mEy~cs-kD~~~AfrI  423 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH-VFVAAALMEYYCS-KDKETAFRI  423 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch-hhHHHHHHHHHhc-CChhHHHHH
Confidence            55566666666554 23333 35667778878888899999999999998877722 2337888887664 677889999


Q ss_pred             HHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHH-HHHhCCCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          344 VGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFL-DHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       344 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      |+--...  -+++|......+.-+...++..-++.++ +.+..+..||  ...|..+++-=..-|+...+.++-+++..
T Consensus       424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            9876542  2345777788888888888886555444 4445555555  57899999999999999999988877643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=4.4e-06  Score=78.65  Aligned_cols=233  Identities=13%  Similarity=0.095  Sum_probs=178.1

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      ..+...+.+.|-...|..+|+++         ..|.-+|.+|...|+.++|..+..+-.+   -+||...|..+.+....
T Consensus       402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence            45667778888888888888765         4678889999999999999999888776   26899999999988888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF  271 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  271 (423)
                      ..-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..--+..+.++++.+.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            88888999888765432       12222222344789999999998766543 33456777777777889999999999


Q ss_pred             HHHHHhCCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          272 LKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       272 ~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      |......  .|| ...||.+-.+|.+.|+..+|...+.+..+.+..+  +.. |..-+....+.|.+++|.+.+.++.+.
T Consensus       542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~--w~i-WENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH--WQI-WENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC--Cee-eechhhhhhhcccHHHHHHHHHHHHHh
Confidence            9998874  454 6689999999999999999999999999876333  222 777777889999999999999998865


Q ss_pred             CCCCCChHhHHHHHHHHhh
Q 014502          351 GLSFKSAEDVEMVICSYFR  369 (423)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~  369 (423)
                      .....++.....++....+
T Consensus       617 ~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  617 RKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             hhhcccchhhHHHHHHHHh
Confidence            4444456665555554444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=9.5e-06  Score=77.36  Aligned_cols=294  Identities=15%  Similarity=0.074  Sum_probs=187.5

Q ss_pred             ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-C-------
Q 014502           70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-G-------  138 (423)
Q Consensus        70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g-------  138 (423)
                      |..|-..++..   ..-|+.+.|.+.++    -     +.+..+|..|.+.|.+.++++-|.-.+-.|... |       
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~----~-----IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a  795 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQ----F-----IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA  795 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHH----H-----HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence            56677788887   48899999987742    2     345678999999999999999998888877642 1       


Q ss_pred             -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          139 -IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY  217 (423)
Q Consensus       139 -~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  217 (423)
                       -.|+ ..=..+.-.....|..++|+.+|++-++          |..|=+.|-..|.|++|.++-+.=-+..   =..||
T Consensus       796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Ty  861 (1416)
T KOG3617|consen  796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTY  861 (1416)
T ss_pred             HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhH
Confidence             1222 2222233334578999999999999886          5666677888999999999876533222   23455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          218 ESLIHGSLKARDFDSVDRFYEEMM----------SLG---------IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       218 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      ..-...+-..+|.+.|++.|++-.          ...         -..|...|.....-+-..|+.+.|+.+|....+ 
T Consensus       862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-  940 (1416)
T KOG3617|consen  862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-  940 (1416)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence            555666667788888888776531          111         122334444444445556777777777665543 


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502          279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE  358 (423)
Q Consensus       279 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  358 (423)
                              |-++++..|-.|+.++|-++-++-..      ...  .-.|...|-..|++.+|..+|.+..          
T Consensus       941 --------~fs~VrI~C~qGk~~kAa~iA~esgd------~AA--cYhlaR~YEn~g~v~~Av~FfTrAq----------  994 (1416)
T KOG3617|consen  941 --------YFSMVRIKCIQGKTDKAARIAEESGD------KAA--CYHLARMYENDGDVVKAVKFFTRAQ----------  994 (1416)
T ss_pred             --------hhhheeeEeeccCchHHHHHHHhccc------HHH--HHHHHHHhhhhHHHHHHHHHHHHHH----------
Confidence                    55577777788999998887765422      222  3457889999999999999987743          


Q ss_pred             hHHHHHHHHhhccccchHHHHHHHHhCCCccc--------HHHHHHHHHHHHhcCChhHHHHH
Q 014502          359 DVEMVICSYFRCAAYDRLDLFLDHIKGSYKLR--------RATYDFLVAGYRRAGLSGKLDSV  413 (423)
Q Consensus       359 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~  413 (423)
                      +|...|..|..++..+.+.-+..+....-...        ..-+...+..|.++|.+.+|+++
T Consensus       995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen  995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHH
Confidence            44444555544443333222222211000000        01233456678888888888775

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00029  Score=69.18  Aligned_cols=199  Identities=10%  Similarity=0.093  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      .|..+..+-.+.|.+.+|++-|-+.      -|+..|.-+++...+.|.|++-.+++....+..-.|.+.  +.+|-+|+
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence            4666666666666666665554332      155566666777777777777666666555544444333  34566666


Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV  340 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a  340 (423)
                      +.++..+..+++       .-|+..-...+.+-|...|.++.|.-++..+..           |..|...+...|+++.|
T Consensus      1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHH
Confidence            666666554443       235555566666666666666666666655543           77777788888888888


Q ss_pred             HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE  416 (423)
Q Consensus       341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (423)
                      .+.-++.       ++..+|..+-.+|...+.+.-++    +.--.+-....-..-++.-|-..|-+++.+.+++.
T Consensus      1240 VD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1240 VDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred             HHHhhhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence            7765543       23677777777777665443222    22222223444566677777777777777666653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=0.00025  Score=61.60  Aligned_cols=154  Identities=8%  Similarity=-0.024  Sum_probs=95.3

Q ss_pred             hHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502           73 SWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLI  150 (423)
Q Consensus        73 ~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  150 (423)
                      ..+..|.-  +..|++++|+.++    ........++...+-.|...+.-.|.+.+|..+-....+     ++---..+.
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y----~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlf  128 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVY----TFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLF  128 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHH----HHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHH
Confidence            33445554  5889999999994    444455557777777777777778888888887655432     333333444


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCC
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI-HGSLKARD  229 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~  229 (423)
                      ...-+.|+-++-..+-+.+..      +..---+|.......-.+.+|+.+|.+....  .|+-...|.-+ -+|.+..-
T Consensus       129 hlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  129 HLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcch
Confidence            555566776666666555543      1112223444445556678888888888765  34444444433 35667777


Q ss_pred             HHHHHHHHHHHHHC
Q 014502          230 FDSVDRFYEEMMSL  243 (423)
Q Consensus       230 ~~~a~~~~~~m~~~  243 (423)
                      ++-+.++++--..+
T Consensus       201 ydvsqevl~vYL~q  214 (557)
T KOG3785|consen  201 YDVSQEVLKVYLRQ  214 (557)
T ss_pred             hhhHHHHHHHHHHh
Confidence            77777777666554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.59  E-value=0.00045  Score=72.04  Aligned_cols=307  Identities=9%  Similarity=-0.036  Sum_probs=189.8

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGI------KPDS--AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----  179 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~------~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----  179 (423)
                      ......+...|++++|...++.....--      .+..  .....+...+...|++++|...+++..+.. -..+.    
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~  491 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHH
Confidence            3344455677899999999987754310      1111  122233345567899999999999876521 11121    


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-
Q 014502          180 KTYDAFISGFSSLGNVDAMNKWYAANIAA----GF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----LGII--P-  247 (423)
Q Consensus       180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p-  247 (423)
                      ...+.+...+...|++++|...+++....    |. .....++..+...+...|++++|...+++...    .+..  + 
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            24455666778899999999999887643    11 11123455666778889999999999887654    2221  1 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--Ccc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-CchH
Q 014502          248 SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKI--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQ--S-PEVL  320 (423)
Q Consensus       248 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~-p~~~  320 (423)
                      ....+..+...+...|++++|...+++.....  ..+  ....+..+...+...|+.++|.+.++.......  . +...
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            22334455556777899999999998875531  112  223444466677889999999999888754211  1 1010


Q ss_pred             -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC--hHhHHHHHHHHhhccccc-hHHHHHHHHhC----CCccc-H
Q 014502          321 -LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS--AEDVEMVICSYFRCAAYD-RLDLFLDHIKG----SYKLR-R  391 (423)
Q Consensus       321 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~----~~~p~-~  391 (423)
                       ...-...+..+...|+.+.|.+.+..........+.  ...+..+..++...|+.+ +...+.+....    +..++ .
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence             100111234456688999999988775542211110  111345667777888874 55555555432    32322 3


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+...+..++.+.|+.++|...+.+..+
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5677788899999999999999988754

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.1e-05  Score=75.99  Aligned_cols=238  Identities=10%  Similarity=0.022  Sum_probs=182.5

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          140 KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES  219 (423)
Q Consensus       140 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  219 (423)
                      +|--..-..+...+...|-..+|..+|++...          |..+|.+|...|+.++|..+..+..+.  +||...|..
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            34344455677888889999999999998864          777889999999999999999888873  789999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR  299 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  299 (423)
                      +.+.....--+++|.++.+.....       .-..+.....+.++++++.+.++.-.+.. +.-..+|-.+..+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            999888888899999998765432       11122222344789999999999877753 3456688888888899999


Q ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHH
Q 014502          300 VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDL  378 (423)
Q Consensus       300 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  378 (423)
                      ++.|.+.|.....  ..|+.... ||.+-.+|.+.|+-.+|...+++..+.+.  .+...|...+....+-|.++ +.+.
T Consensus       535 ~q~av~aF~rcvt--L~Pd~~ea-WnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  535 EQAAVKAFHRCVT--LEPDNAEA-WNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             hHHHHHHHHHHhh--cCCCchhh-hhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHH
Confidence            9999999998877  66888776 99999999999999999999999998774  35888888888888888884 6777


Q ss_pred             HHHHHhCC-CcccHHHHHHHHHHHH
Q 014502          379 FLDHIKGS-YKLRRATYDFLVAGYR  402 (423)
Q Consensus       379 ~~~~~~~~-~~p~~~~~~~l~~~~~  402 (423)
                      +.++..-. ...|......++....
T Consensus       610 ~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  610 YHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHHHhhhhcccchhhHHHHHHHH
Confidence            77665321 1124444444444443

>PLN02789 farnesyltranstransferase

Probab=98.59  E-value=0.0002  Score=63.91  Aligned_cols=205  Identities=9%  Similarity=0.018  Sum_probs=124.0

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV-  159 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-  159 (423)
                      ..+..++|+..    .++....++-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+.+.|+. 
T Consensus        49 ~~e~serAL~l----t~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         49 SDERSPRALDL----TADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             cCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence            45567777777    55666666666667776666666666 567888888887776433 555677665555555552 


Q ss_pred             -HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 014502          160 -VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---RDF----D  231 (423)
Q Consensus       160 -~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~----~  231 (423)
                       ++++.+++++.+.  -+-|..+|+...-++...|+++++++.++++.+.++. |..+|+.....+.+.   |..    +
T Consensus       124 ~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        124 ANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             hHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence             5667777777652  1345667777777777777888888888888777644 666666655544443   222    3


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502          232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCAR----RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  296 (423)
                      +.++...++.... +-|...|+-+...+...    +...+|.+.+.+....+ ..+......|++.|+.
T Consensus       201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            4555555554432 23345555555555442    33445666666655533 2344556666666654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.58  E-value=1.8e-05  Score=68.02  Aligned_cols=59  Identities=14%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          290 LVKCYCELGRVDELEEQLETLTKCNQ-SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +...|.+.|++++|...++...+... .|.. ...+..+..++...|+.++|...++.+..
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPAT-EEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44456666666666666666655322 1211 11255666666666666666666666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=7.6e-05  Score=68.75  Aligned_cols=253  Identities=12%  Similarity=0.066  Sum_probs=181.5

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD  231 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  231 (423)
                      -+.+.|++.+|.-.|+...+.  -+-+...|--|.......++-..|+..+.+..+.... |....-.|.-.|...|.-.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            345788899999999888763  2445678888888888889988999999998887644 7788888888899999999


Q ss_pred             HHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502          232 SVDRFYEEMMSLGII--------PSIPILEKVLEGLCARRKLDRVKSFLKFLL-GGGWKINENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       232 ~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~  302 (423)
                      .|++.++.......+        ++...-..  ..+.....+....++|-++. ..+..+|..++..|.-.|--.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999988887543210        00000000  11222223344455555543 44545778888888888889999999


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH
Q 014502          303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD  381 (423)
Q Consensus       303 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~  381 (423)
                      |.+.|+.+..  .+|+.... ||-|-..++...+.++|+..|.+.++  +.|.=..+...|.-.|...|.+ |+++.|.+
T Consensus       449 aiDcf~~AL~--v~Pnd~~l-WNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  449 AVDCFEAALQ--VKPNDYLL-WNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHh--cCCchHHH-HHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999988  56776654 99999999999999999999999987  6666567778888889999988 57777766


Q ss_pred             HHh---CCC------cccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502          382 HIK---GSY------KLRRATYDFLVAGYRRAGLSGKLDSVI  414 (423)
Q Consensus       382 ~~~---~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~  414 (423)
                      .+.   ++.      .++...|..|=.++.-.++.|.+.+..
T Consensus       524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            542   211      123456777777777778777555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.58  E-value=3e-05  Score=64.48  Aligned_cols=164  Identities=10%  Similarity=0.048  Sum_probs=117.9

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      |..+ ..+-..+.-.|+-+....+....... .+-|....+..+....+.|++.+|+..+++...  .-++|..+|+.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence            5555 66666666777777777766664433 233556667788888888888888888888875  4567778888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      -+|.+.|++++|..-|.+..+.... +...+|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence            8888888888888888887776433 55667777777778888888888888777665 335666666777777888888


Q ss_pred             HHHHHHHHHH
Q 014502          267 RVKSFLKFLL  276 (423)
Q Consensus       267 ~a~~~~~~~~  276 (423)
                      +|.++...-.
T Consensus       220 ~A~~i~~~e~  229 (257)
T COG5010         220 EAEDIAVQEL  229 (257)
T ss_pred             HHHhhccccc
Confidence            8887765544

>PLN02789 farnesyltranstransferase

Probab=98.58  E-value=0.00028  Score=63.02  Aligned_cols=213  Identities=9%  Similarity=0.029  Sum_probs=138.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKP-DSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISG  188 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  188 (423)
                      +..+-..+...++.++|+.+.+++.+.  .| +..+|+.--.++...| ++++++..++++.+.  -+.+..+|+.--..
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~  115 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHH
Confidence            334444555677888999999998876  33 3446776666666777 578999999988862  23445566655545


Q ss_pred             HHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 014502          189 FSSLGN--VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---R  263 (423)
Q Consensus       189 ~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g  263 (423)
                      +.+.|+  .+++..+++++.+.... |..+|+...-.+.+.|+++++++.++++.+.+ .-+...|+.....+.+.   |
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence            555565  36778888888877644 78888888888888899999999999998876 34455566554444433   2


Q ss_pred             CH----HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh
Q 014502          264 KL----DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL----GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL  333 (423)
Q Consensus       264 ~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~  333 (423)
                      ..    +...+...+++... +-|...|+-+...+...    ++..+|.+.+.+....+  |.... +...|++.|+.
T Consensus       194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~-al~~l~d~~~~  267 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVF-ALSDLLDLLCE  267 (320)
T ss_pred             cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHH-HHHHHHHHHHh
Confidence            22    35566665666542 34566777666666652    33455777777665532  33222 25666777664

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.58  E-value=2e-05  Score=67.76  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=35.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCChHhHHHHHHHHhhccccch-HHHH
Q 014502          326 GIIRLYALSDRLDDVEYSVGRMGKQGL-SFKSAEDVEMVICSYFRCAAYDR-LDLF  379 (423)
Q Consensus       326 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~-~~~~  379 (423)
                      .+...|...|++++|...+++..+..- .|..+..+..+..++.+.|+.+. ...+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345567778888888888888776422 23335677788888888888753 4433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.56  E-value=0.00077  Score=63.19  Aligned_cols=293  Identities=15%  Similarity=0.062  Sum_probs=180.2

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----------CC
Q 014502          109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSE----------EY  175 (423)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~  175 (423)
                      ..|..+.+.|-..|+++.|..+|++..+...+--   ..+|..-...=.+..+++.|+++++......          +.
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            4588888999999999999999999887644322   2355555555567778888988888765410          11


Q ss_pred             CC------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502          176 KP------NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI  249 (423)
Q Consensus       176 ~p------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  249 (423)
                      ++      +...|...+..--..|-++....+|+.+.+..+. ++..--.....+-.+..++++.++|++=...--.|+.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v  546 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV  546 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence            11      1223444555555667888888888888877654 3333222333345667788899888765554335554


Q ss_pred             H-HHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCccCHHhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 014502          250 P-ILEKVLEGLCA---RRKLDRVKSFLKFLLGGGWKINENMAQKLV--KCYCELGRVDELEEQLETLTKCNQSPEVLLHF  323 (423)
Q Consensus       250 ~-~~~~li~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  323 (423)
                      . .|+..+.-+.+   ....+.|..+|++.++ |++|...-+--|+  ..=-+.|....|..+++.... ++.+......
T Consensus       547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~m  624 (835)
T KOG2047|consen  547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDM  624 (835)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            3 46666666554   3468899999999998 6666543222121  222235778888899988654 3556555556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHH---HHHHHHhhccccchHHHHHHHHhCCCcc--cHHHHHHHH
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVE---MVICSYFRCAAYDRLDLFLDHIKGSYKL--RRATYDFLV  398 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~  398 (423)
                      ||..|.--...=-+.....+|++.++.  -|+ ...-.   .....-++.|..+.+..+.....+-..|  +..-|..-=
T Consensus       625 yni~I~kaae~yGv~~TR~iYekaIe~--Lp~-~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk  701 (835)
T KOG2047|consen  625 YNIYIKKAAEIYGVPRTREIYEKAIES--LPD-SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK  701 (835)
T ss_pred             HHHHHHHHHHHhCCcccHHHHHHHHHh--CCh-HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence            888877666665566667777777764  222 22222   1223334456665555444444443344  344566666


Q ss_pred             HHHHhcCCh
Q 014502          399 AGYRRAGLS  407 (423)
Q Consensus       399 ~~~~~~g~~  407 (423)
                      ..=.+.|+-
T Consensus       702 ~FEvrHGne  710 (835)
T KOG2047|consen  702 EFEVRHGNE  710 (835)
T ss_pred             HHHHhcCCH
Confidence            666677773

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.55  E-value=0.00012  Score=69.69  Aligned_cols=283  Identities=11%  Similarity=0.002  Sum_probs=189.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014502           87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLF  166 (423)
Q Consensus        87 ~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  166 (423)
                      .++++.    +++-.+.+..|+.+.-.+.--|+..++++.|.+...+..+.+-.-+...|..+...+...+++.+|+.+.
T Consensus       461 ~kslqa----le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  461 KKSLQA----LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHH----HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            345555    5666666676777767777788889999999999999998866678999999999999999999999999


Q ss_pred             HHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC--CC-----CHHHHH
Q 014502          167 EIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA---------------------GF--SV-----NVQTYE  218 (423)
Q Consensus       167 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~--~~-----~~~~~~  218 (423)
                      +......|  -|......-+..-...++.++++.....+...                     |+  .+     ...++.
T Consensus       537 d~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr  614 (799)
T KOG4162|consen  537 DAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSR  614 (799)
T ss_pred             HHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence            98776332  22211112222222345555554443333211                     00  00     112222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMSLGII--PS------IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL  290 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l  290 (423)
                      .+..-....+  +.+..- ..|...-+.  |+      ...|......+.+.+..++|...+.+.... .+.....|...
T Consensus       615 ~ls~l~a~~~--~~~~se-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~  690 (799)
T KOG4162|consen  615 YLSSLVASQL--KSAGSE-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLR  690 (799)
T ss_pred             HHHHHHHhhh--hhcccc-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHh
Confidence            2211111000  000000 002221122  22      123556667788889999999888888775 34456677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502          291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY--SVGRMGKQGLSFKSAEDVEMVICSYF  368 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~~l~~~~~  368 (423)
                      ...+...|..++|.+.|.....  +.|+.... ..++...+.+.|+..-|..  ++.++.+  +.|.++..|-.+...+.
T Consensus       691 G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s-~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k  765 (799)
T KOG4162|consen  691 GLLLEVKGQLEEAKEAFLVALA--LDPDHVPS-MTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFK  765 (799)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHh--cCCCCcHH-HHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence            7888889999999999998887  56776654 7899999999999888888  9999988  56788999999999999


Q ss_pred             hccccc-hHHHHHHHHh
Q 014502          369 RCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       369 ~~~~~~-~~~~~~~~~~  384 (423)
                      +.|+.+ +++-|....+
T Consensus       766 ~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  766 KLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HccchHHHHHHHHHHHh
Confidence            999996 5666655443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=3.1e-05  Score=71.22  Aligned_cols=256  Identities=10%  Similarity=-0.013  Sum_probs=174.8

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDA  184 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~  184 (423)
                      ||++-   ...-+.+.|++.+|.-.|+........ +...|--|......+++-..|+..+++..+   +.| |....-.
T Consensus       286 pdPf~---eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLma  358 (579)
T KOG1125|consen  286 PDPFK---EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMA  358 (579)
T ss_pred             CChHH---HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHH
Confidence            55543   233456788899998888888776422 566888888888888888888888888876   345 4556777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSV--------NVQTYESLIHGSLKARDFDSVDRFYEEMM-SLGIIPSIPILEKV  255 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l  255 (423)
                      |.-.|...|.-.+|++.++.-....++-        +...-+.  ..+.......+..++|-++. ..+..+|......|
T Consensus       359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L  436 (579)
T KOG1125|consen  359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL  436 (579)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence            7778888888888888888765443110        0000000  12233344555566666554 44545677777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502          256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD  335 (423)
Q Consensus       256 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g  335 (423)
                      --.|.-.|+++.|.+.|+.++... +-|..+||.|...++...+.++|+..|++..+  +.|.-+-.=|| |.-.|...|
T Consensus       437 GVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG  512 (579)
T KOG1125|consen  437 GVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLG  512 (579)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhh
Confidence            777888899999999999888853 34667899999999999999999999998888  55664433244 555788889


Q ss_pred             ChhHHHHHHHHHH---hC-----CCCCCChHhHHHHHHHHhhccccc
Q 014502          336 RLDDVEYSVGRMG---KQ-----GLSFKSAEDVEMVICSYFRCAAYD  374 (423)
Q Consensus       336 ~~~~a~~~~~~m~---~~-----~~~~~~~~~~~~l~~~~~~~~~~~  374 (423)
                      .+++|.+.|-..+   +.     +....+...|.+|-.++.-.++.|
T Consensus       513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            9988887775543   21     122224678888877777766666

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.53  E-value=0.00033  Score=73.04  Aligned_cols=302  Identities=8%  Similarity=-0.036  Sum_probs=180.9

Q ss_pred             HhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CCCH--HhHHHHHHHHH
Q 014502          118 SGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-----KPNS--KTYDAFISGFS  190 (423)
Q Consensus       118 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~~--~~~~~li~~~~  190 (423)
                      ....|+++.+...++.+.......+..........+...|++++|...+.+......-     .+..  .....+-..+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            4455777777777666532211112333344555667789999999999887542110     1111  11222334566


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCC--HHHHHHHHHHHHh
Q 014502          191 SLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDFDSVDRFYEEMMSL--GI-IPS--IPILEKVLEGLCA  261 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p~--~~~~~~li~~~~~  261 (423)
                      ..|++++|...+++....-...+.    ...+.+...+...|++++|...+++....  .. .+.  ..++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            789999999999987763212121    34455666778899999999999887642  11 111  2345556667788


Q ss_pred             cCCHHHHHHHHHHHHhC----CCc--c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHHH
Q 014502          262 RRKLDRVKSFLKFLLGG----GWK--I-NENMAQKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGIIRLYA  332 (423)
Q Consensus       262 ~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~li~~~~  332 (423)
                      .|+++.|...+++....    +..  + ....+..+...+...|++++|...+++.....  ..+......+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998887552    221  1 22334455666777899999999988875421  112222333566777888


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCChHhH-----HHHHHHHhhccccchHHHHHHHHhCCCccc----HHHHHHHHHHHHh
Q 014502          333 LSDRLDDVEYSVGRMGKQGLSFKSAEDV-----EMVICSYFRCAAYDRLDLFLDHIKGSYKLR----RATYDFLVAGYRR  403 (423)
Q Consensus       333 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~  403 (423)
                      ..|+.++|.+.+.+.............+     ...+..+...|+.+.+..+...........    ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            9999999999988875421110001111     112234445666655443332222111111    1124567788899


Q ss_pred             cCChhHHHHHHHHHHh
Q 014502          404 AGLSGKLDSVINEMKF  419 (423)
Q Consensus       404 ~g~~~~a~~~~~~m~~  419 (423)
                      .|++++|...+++...
T Consensus       704 ~g~~~~A~~~l~~al~  719 (903)
T PRK04841        704 LGQFDEAEIILEELNE  719 (903)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999999988654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.00016  Score=61.33  Aligned_cols=184  Identities=14%  Similarity=0.151  Sum_probs=123.9

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN  199 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  199 (423)
                      ..+++..+..+.++....|   +..+.+.......+.|+++.|++-|+...+..|..|- ..||.-+ ++.+.++.+.|+
T Consensus       124 se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasAL  198 (459)
T KOG4340|consen  124 SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASAL  198 (459)
T ss_pred             ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHH
Confidence            4566666666666665432   4445555555566889999999999999886676665 4677655 566789999999


Q ss_pred             HHHHHHHHCCCCC-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHH
Q 014502          200 KWYAANIAAGFSV-------------NV---------------QTYESLIHGSLKARDFDSVDRFYEEMMS-LGIIPSIP  250 (423)
Q Consensus       200 ~~~~~m~~~~~~~-------------~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~  250 (423)
                      +...++.+.|+.-             |+               ..+|.=...+.+.|+++.|.+-+-+|.- ..-..|+.
T Consensus       199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv  278 (459)
T KOG4340|consen  199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV  278 (459)
T ss_pred             HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence            9999998877521             11               1223333345678999999998888843 22345667


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      |...+.-. -..+++....+-+.-+.... +....||..++-.||+..-++.|-+++.+-
T Consensus       279 TLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  279 TLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             hhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            76655322 12345555555566666653 345678888999999999999998888653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=0.00042  Score=57.88  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----R  262 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~  262 (423)
                      ..|+..+++++|++..+...      +......=...+.+..+++.|.+.+++|.+   .-+..|.+-+..++.+    .
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccc
Confidence            44555666666666555411      222222223334555556666666666654   2234444444444432    2


Q ss_pred             CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      +++..|.-+|++|-++ .+|+.-+.+-...++...|++++|..++++...+
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4455566666665543 3455555555555555566666666666655543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=0.001  Score=61.11  Aligned_cols=353  Identities=12%  Similarity=0.024  Sum_probs=170.6

Q ss_pred             hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHH
Q 014502           54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFT  132 (423)
Q Consensus        54 ~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  132 (423)
                      .+...|.+.....+. +.+.|+.=..+ .+.|++.+|++-    -.+-.+..+.-...|+....++.-.|++++|+.-|.
T Consensus        20 ~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~d----a~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~   94 (539)
T KOG0548|consen   20 TAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKD----ATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS   94 (539)
T ss_pred             HHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHH----HHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence            345566665544433 56666666666 677888888776    444445544456778888888888888888888888


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHHHhcC--CCCCCHHhHHHHHHHHHhcC-------CHHHHHH
Q 014502          133 SMEAQGIKPDSAVFNSLICACLCSGDVVTA---LSLFEIMVSSE--EYKPNSKTYDAFISGFSSLG-------NVDAMNK  200 (423)
Q Consensus       133 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~~-------~~~~a~~  200 (423)
                      +-.+.. +-+...++-+..++.......+.   -.++.......  ........|..++...-+.-       +.+...+
T Consensus        95 ~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~  173 (539)
T KOG0548|consen   95 EGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK  173 (539)
T ss_pred             HHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence            777652 22445666666655211000000   00000000000  00000001111111111000       0000000


Q ss_pred             HHHHHH--------HCC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          201 WYAANI--------AAG-------FSV----------------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL  243 (423)
Q Consensus       201 ~~~~m~--------~~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  243 (423)
                      ....+.        ..|       ..|                      -..-...+.++..+..+++.|++-+....+.
T Consensus       174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el  253 (539)
T KOG0548|consen  174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL  253 (539)
T ss_pred             HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence            000000        000       000                      0012334455555555666666655555443


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 014502          244 GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-------KLVKCYCELGRVDELEEQLETLTKCNQS  316 (423)
Q Consensus       244 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-------~li~~~~~~g~~~~a~~~~~~~~~~~~~  316 (423)
                      .  -+..-++..-.+|...|.+.+....-....+.|.. ...-|+       .+..+|.+.++++.+...|++.......
T Consensus       254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt  330 (539)
T KOG0548|consen  254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT  330 (539)
T ss_pred             h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence            2  22333344444455555555544444444443321 111111       1222444445555555555554432222


Q ss_pred             CchHH------------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          317 PEVLL------------------------HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       317 p~~~~------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      |+...                        . ...--..+.+.|++..|+.-+.+++...  |+|+..|..-.-+|.+.|.
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~  407 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGE  407 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhh
Confidence            22211                        1 1112445667788888888888877744  7778888888888888877


Q ss_pred             c-chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          373 Y-DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       373 ~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      + .++.-....++. -++....|..=..++.-..+|++|.+.|++-.+
T Consensus       408 ~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  408 YPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 355544444433 133355566666667777777777777776543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.47  E-value=0.0001  Score=72.59  Aligned_cols=161  Identities=11%  Similarity=0.012  Sum_probs=124.9

Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTY  217 (423)
Q Consensus       139 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  217 (423)
                      ...++..+-.|.......|.+++|..+++...+   ..|+. .....+...+.+.+++++|....++....... +....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~  157 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI  157 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence            345688888999999999999999999999987   35654 56677788999999999999999999988644 66777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502          218 ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL  297 (423)
Q Consensus       218 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  297 (423)
                      +.+..++.+.|++++|..+|++....+ .-+..++..+..++-..|+.++|...|+...+. ..+....|+..+.     
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~-----  230 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV-----  230 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH-----
Confidence            778888999999999999999998743 334778888999999999999999999998876 2345555555432     


Q ss_pred             CCHHHHHHHHHHHH
Q 014502          298 GRVDELEEQLETLT  311 (423)
Q Consensus       298 g~~~~a~~~~~~~~  311 (423)
                       ++..-...++.+.
T Consensus       231 -~~~~~~~~~~~~~  243 (694)
T PRK15179        231 -DLNADLAALRRLG  243 (694)
T ss_pred             -HHHHHHHHHHHcC
Confidence             2333344555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.45  E-value=0.00014  Score=72.43  Aligned_cols=154  Identities=10%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLE  257 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  257 (423)
                      +...+-.+..+|-+.|+.++|..+|+++.+.... |..+.|.+...|... +.++|.+++.+....              
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------  178 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------  178 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence            3346666777777778888888888887777633 677777777777777 777777777666542              


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh
Q 014502          258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL  337 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~  337 (423)
                       +...+++..+.++|.++..... .+...+..+.+.....-....+                 ..++--+-..|-..+++
T Consensus       179 -~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~-----------------~~~~~~l~~~y~~~~~~  239 (906)
T PRK14720        179 -FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRL-----------------VGLLEDLYEPYKALEDW  239 (906)
T ss_pred             -HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchh-----------------HHHHHHHHHHHhhhhhh
Confidence             4455566666777776666421 1222222222211111001111                 11134445567777778


Q ss_pred             hHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502          338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYF  368 (423)
Q Consensus       338 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~  368 (423)
                      +++..+++.+.+  ..|.+.....-++.+|.
T Consensus       240 ~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        240 DEVIYILKKILE--HDNKNNKAREELIRFYK  268 (906)
T ss_pred             hHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence            888888888776  34445555566666665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.45  E-value=9.1e-05  Score=61.42  Aligned_cols=118  Identities=7%  Similarity=-0.044  Sum_probs=57.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH-HhcCC--HHHH
Q 014502          227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY-CELGR--VDEL  303 (423)
Q Consensus       227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~--~~~a  303 (423)
                      .++.+++...++...+.. +.|...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344444444444444332 3344455555555555555555555555555542 22344444444432 34444  3555


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       304 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+++++..+.+  |+.... +..+...+...|++++|+..|+++.+
T Consensus       130 ~~~l~~al~~d--P~~~~a-l~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALALD--ANEVTA-LMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhC--CCChhH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555555532  333222 44555555555555555555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.44  E-value=0.00015  Score=60.46  Aligned_cols=157  Identities=10%  Similarity=0.048  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR  263 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  263 (423)
                      .+-..+...|+-+....+........ ..|....+..+....+.|++..|+..+++..... ++|..+|+.+--+|-+.|
T Consensus        71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            34445555555555555555443322 2244444445566666666666666666655443 455666666666666666


Q ss_pred             CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502          264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS  343 (423)
Q Consensus       264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~  343 (423)
                      ++++|..-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++......+......   -..+.......|++++|.++
T Consensus       149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v---~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV---RQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH---HHHHHHHHhhcCChHHHHhh
Confidence            6666666666666542 1234455555556666666666666666655543222111   34455555666666666665


Q ss_pred             HHH
Q 014502          344 VGR  346 (423)
Q Consensus       344 ~~~  346 (423)
                      ...
T Consensus       225 ~~~  227 (257)
T COG5010         225 AVQ  227 (257)
T ss_pred             ccc
Confidence            544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.41  E-value=4.4e-05  Score=59.82  Aligned_cols=108  Identities=9%  Similarity=0.029  Sum_probs=65.3

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          129 HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       129 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      .+|++..+.    ++..+......+...|++++|...|+.....  -+.+...|..+..++.+.|++++|...|++....
T Consensus        14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344444443    2333444556666667777777777666651  1335556666666666777777777777766665


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          209 GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL  243 (423)
Q Consensus       209 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  243 (423)
                      .. .+...+..+..++.+.|++++|+..|+...+.
T Consensus        88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            42 25666666666666677777777777666553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.41  E-value=0.00027  Score=69.67  Aligned_cols=145  Identities=7%  Similarity=-0.002  Sum_probs=107.2

Q ss_pred             CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHh
Q 014502          104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKT  181 (423)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~  181 (423)
                      ...+...+-.|..+..+.|.+++|..+++...+.  .|+ ......+...+.+.+++++|+..+++....   .|+ ...
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~  156 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSARE  156 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHH
Confidence            3456888888888888888888888888888876  454 446777788888888888888888888762   354 445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV  255 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  255 (423)
                      ...+-.++.+.|++++|+.+|++....+. -+..++..+...+-+.|+.++|...|+...+.. .|....|+..
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            56666778888888888888888887432 247778888888888888888888888876542 3444444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.41  E-value=6.1e-05  Score=71.25  Aligned_cols=160  Identities=11%  Similarity=0.065  Sum_probs=89.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      +......|.+|+.+++.+...+.  -.--|..+.+.|...|+++.|.++|-+.         ..++-.|..|.+.|+++.
T Consensus       741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            34445556666666666665432  2233555666777777777777776432         124455667777777777


Q ss_pred             HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      |.++-.+...  .......|-+-..-+-+.|++.+|++++-.+..    |+.       .|..|-+.|..++.+++.++-
T Consensus       810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-------aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-------AIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-------HHHHHHhhCcchHHHHHHHHh
Confidence            7776555432  233344555555555666677666666654432    432       245566666666666665543


Q ss_pred             HhCCCCCCChHhHHHHHHHHhhccccch
Q 014502          348 GKQGLSFKSAEDVEMVICSYFRCAAYDR  375 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  375 (423)
                      .-..+    .++...+..-+...|+..+
T Consensus       877 h~d~l----~dt~~~f~~e~e~~g~lka  900 (1636)
T KOG3616|consen  877 HGDHL----HDTHKHFAKELEAEGDLKA  900 (1636)
T ss_pred             Chhhh----hHHHHHHHHHHHhccChhH
Confidence            22111    3444555555666666543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.40  E-value=5.3e-07  Score=51.44  Aligned_cols=33  Identities=36%  Similarity=0.616  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS  248 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  248 (423)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777776665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.002  Score=59.86  Aligned_cols=321  Identities=14%  Similarity=0.096  Sum_probs=175.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCC-------------------
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKP-------------------  141 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-------------------  141 (423)
                      ++.+..++|+..+    +   .....|..+...-...+-+.+++++|.++|+.+.+.+.+-                   
T Consensus        90 Yrlnk~Dealk~~----~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   90 YRLNKLDEALKTL----K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHcccHHHHHHHH----h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            6999999999883    3   2233456677777888899999999999999996543210                   


Q ss_pred             --------CHHHHHHH---HHHHHccCCHHHHHHHHHHHHh----c---C-----CCCCCHHh-HHHHHHHHHhcCCHHH
Q 014502          142 --------DSAVFNSL---ICACLCSGDVVTALSLFEIMVS----S---E-----EYKPNSKT-YDAFISGFSSLGNVDA  197 (423)
Q Consensus       142 --------~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~----~---~-----~~~p~~~~-~~~li~~~~~~~~~~~  197 (423)
                              ...+|..+   ...++..|++.+|+++++...+    .   .     ++.....+ --.|.-.+-..|+-++
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence                    01133333   3345678999999999999922    0   0     01111111 1234455667899999


Q ss_pred             HHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH----------------HHH-----------------------
Q 014502          198 MNKWYAANIAAGFSVNVQ----TYESLIHGSLKARDFD----------------SVD-----------------------  234 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~----------------~a~-----------------------  234 (423)
                      |.+++....+.... |..    .-|.|+..-....-++                ...                       
T Consensus       243 a~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  243 ASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998887532 321    1122211100000000                000                       


Q ss_pred             ---HHHHHHHH-CCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502          235 ---RFYEEMMS-LGIIPSIPILEKVLEGLCA--RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLE  308 (423)
Q Consensus       235 ---~~~~~m~~-~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~  308 (423)
                         ++.+.... -+..| ...+.+++..+.+  ......+.+++...-+..-.-...+.-..+......|+++.|.+++.
T Consensus       322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence               00000001 01122 2344455544432  22456666666666554322223445555666677788888888877


Q ss_pred             --------HHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---C--CCCChHhHHHHHHHHhhccccc-
Q 014502          309 --------TLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG---L--SFKSAEDVEMVICSYFRCAAYD-  374 (423)
Q Consensus       309 --------~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~--~~~~~~~~~~l~~~~~~~~~~~-  374 (423)
                              .+.+.+..|..+    ..++..|.+.++.+.|..++++....-   .  .+.-...+.-+...-.+.|..+ 
T Consensus       401 ~~~~~~~ss~~~~~~~P~~V----~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  401 LFLESWKSSILEAKHLPGTV----GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHhhhhhhhhhhhccChhHH----HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence                    666666666553    356666777777666666666554310   0  0111222233333344456653 


Q ss_pred             hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          375 RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE  416 (423)
Q Consensus       375 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (423)
                      +...+.+..+. .++|..+...++.+|++. +.+.|..+-+.
T Consensus       477 a~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  477 ASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             HHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            45555555542 356677777777777654 45555555443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.36  E-value=4.8e-05  Score=63.11  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH-HhcCC--HHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF-SSLGN--VDA  197 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~-~~~~~--~~~  197 (423)
                      .++.+++...++...+.. +.|...|..+...|...|++++|...|++..+..  +-+...+..+..++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            455556666665555543 3356667777777777777777777777666521  22444555555543 45555  366


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG  244 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  244 (423)
                      |.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+..
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            77777776666533 55666666666667777777777777766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.34  E-value=3.2e-05  Score=60.58  Aligned_cols=100  Identities=7%  Similarity=-0.139  Sum_probs=50.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS  334 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~  334 (423)
                      ....+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....  .|+.... +..+..++...
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a-~~~lg~~l~~~  105 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEP-VYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHH-HHHHHHHHHHc
Confidence            3444455555555555555555432 224445555555555555555555555555552  2322221 44455555555


Q ss_pred             CChhHHHHHHHHHHhCCCCCCChHhH
Q 014502          335 DRLDDVEYSVGRMGKQGLSFKSAEDV  360 (423)
Q Consensus       335 g~~~~a~~~~~~m~~~~~~~~~~~~~  360 (423)
                      |+.++|...|+...+  ..|+++..+
T Consensus       106 g~~~eAi~~~~~Al~--~~p~~~~~~  129 (144)
T PRK15359        106 GEPGLAREAFQTAIK--MSYADASWS  129 (144)
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHHH
Confidence            555555555555554  334444444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.33  E-value=9.2e-07  Score=50.06  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP  247 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  247 (423)
                      .+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355555555555555555555555555555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=0.00098  Score=60.58  Aligned_cols=234  Identities=10%  Similarity=0.012  Sum_probs=153.6

Q ss_pred             HHHhcCC-chhH-HHHHHHhh---hccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHH
Q 014502           45 SRLLQVP-VSQI-KTTLDSVD---IFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLI  115 (423)
Q Consensus        45 ~~l~~~~-~~~~-~~~~~~m~---~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~  115 (423)
                      ..+.+.| ++.. .+.|+.+.   ..|-+|..    .+++- +...+..++...    -+++...+.   |+...+...+
T Consensus       210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~----yl~THPlp~~RIa~lr~r----a~q~p~~~~~d~~~~~~~~~r~  281 (484)
T COG4783         210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPE----YLLTHPLPEERIADLRNR----AEQSPPYNKLDSPDFQLARARI  281 (484)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHHhcCCCCCh----HHhcCCCchhHHHHHHHH----HHhCCCCCCCCCccHHHHHHHH
Confidence            3445555 3332 55555554   44444443    23333 455555565555    455554444   5666666666


Q ss_pred             HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCC
Q 014502          116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGN  194 (423)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~  194 (423)
                      ........-..+-.++.+..+.   -....+.-....+...|++++|+..++.+...   .|+. .-.......+.+.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk  355 (484)
T COG4783         282 RAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANK  355 (484)
T ss_pred             HHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence            6555444434444444333331   12333333344456689999999999998862   4554 445555688999999


Q ss_pred             HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK  273 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  273 (423)
                      .++|.+.++.+...  .|+ ....-.+..+|.+.|++.+|+..+++..... +-|...|..+..+|...|+..++..-..
T Consensus       356 ~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         356 AKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             hHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            99999999999887  444 5666777889999999999999998887654 6678899999999999998888766543


Q ss_pred             HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                                        +.|...|++++|...+....+.
T Consensus       433 ------------------E~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         433 ------------------EGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             ------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence                              3455678888888877777664

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=0.00048  Score=68.80  Aligned_cols=223  Identities=13%  Similarity=0.140  Sum_probs=142.2

Q ss_pred             cCCcC-hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHH-------------
Q 014502           66 AFNSS-QFSWDALITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV-------------  130 (423)
Q Consensus        66 g~~p~-~~~~~~li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-------------  130 (423)
                      .+.|+ ...|..|+..+ ..+++++|.++.    +.-....+.....|-.+...+.+.++.+.+..+             
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~----~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~  100 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDIC----EEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA  100 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence            34443 56777888885 888999999984    444444443444444444466666666655544             


Q ss_pred             -----HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          131 -----FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN  205 (423)
Q Consensus       131 -----~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  205 (423)
                           .+.|...  .-+...+-.+..+|-+.|+.++|..+|+++.+ .. +-|..+.|.+.-.|... ++++|.+++.+.
T Consensus       101 ~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720        101 IVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             HHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence                 2222221  11235677788899999999999999999998 33 55778899999999999 999999999887


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccCH
Q 014502          206 IAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKINE  284 (423)
Q Consensus       206 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~  284 (423)
                      ...               +...+++.++.+++.++....  |+..               +....+.+.+... |..--.
T Consensus       176 V~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~~~~~~  223 (906)
T PRK14720        176 IYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHREFTRLV  223 (906)
T ss_pred             HHH---------------HHhhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhccchhH
Confidence            754               666778888888888887653  3221               2222222333222 222334


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Q 014502          285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYA  332 (423)
Q Consensus       285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~  332 (423)
                      .++..+...|-+.++++++..+++.+.+..  |+..-. ..-++..|.
T Consensus       224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a-~~~l~~~y~  268 (906)
T PRK14720        224 GLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKA-REELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--Ccchhh-HHHHHHHHH
Confidence            455556666777777777777777777633  332211 444555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=0.00052  Score=62.31  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=62.8

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 014502           71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSL  149 (423)
Q Consensus        71 ~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l  149 (423)
                      ..-|..-+..+..+.+++|+..    ++.+....+.|+.........+.+.++.++|.+.++.+...  .|+ ...+-.+
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~----l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~  380 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKL----LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNL  380 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence            3444455555555555555555    33444444444454555555555555555555555555544  333 3344445


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW  201 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  201 (423)
                      ..+|.+.|++.+|+.+++....  ..+-|...|..|-.+|...|+..++..-
T Consensus       381 a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            5555555555555555555543  2234445555555555555555544443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00057  Score=57.16  Aligned_cols=197  Identities=14%  Similarity=0.080  Sum_probs=130.4

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAM-HVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA  184 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  184 (423)
                      |.......+.......++.+.-+ ++.+.+.......+......-...|++.|++++|++......       +......
T Consensus        70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al  142 (299)
T KOG3081|consen   70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAAL  142 (299)
T ss_pred             ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHH
Confidence            34444444444444444433333 334444443333333444445567889999999999887622       3333333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      =+..+.+..+++.|.+.+++|.+..   +..|.+-|..++.+    .+++.+|.-+|++|-++ ..|+..+.+....++.
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence            4556678889999999999998753   55666656555554    46789999999999654 4789999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV-DELEEQLETLTKCN  314 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~  314 (423)
                      ..|++++|..++++.+..... ++.+...++.+-...|.. +-..+.+.+++...
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence            999999999999999987543 555555555544455554 45567777777643

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.28  E-value=1.9e-05  Score=72.22  Aligned_cols=121  Identities=12%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ--GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD  183 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  183 (423)
                      .+......+++.+....+++.+..++-+....  ....-..|..++|+.|.+.|..++++.+++.=.. .|+.||..++|
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n  142 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFN  142 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHH
Confidence            35555666666666666677777766666654  1111223445777777777777777777766666 67777777777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA  227 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  227 (423)
                      .||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            77777777777777777777666665555666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.25  E-value=1.7e-06  Score=49.28  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN  213 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  213 (423)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            345555555555555555555555555554444

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.0026  Score=55.47  Aligned_cols=146  Identities=10%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHH
Q 014502          266 DRVKSFLKFLLGGGWKINEN-MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSV  344 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~  344 (423)
                      .-|.+.|+-.-.++..-|.. --.++..++.-..++++....++.+...-...|...  + .+..+++..|++.+|+++|
T Consensus       340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn--~-N~AQAk~atgny~eaEelf  416 (557)
T KOG3785|consen  340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN--L-NLAQAKLATGNYVEAEELF  416 (557)
T ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh--h-HHHHHHHHhcChHHHHHHH
Confidence            34555554444444433322 233444455555666777777766665433333332  3 3677888888888888888


Q ss_pred             HHHHhCCCCCCChHhH-HHHHHHHhhccccc-hHHHHHHHHhCCCcccH-HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          345 GRMGKQGLSFKSAEDV-EMVICSYFRCAAYD-RLDLFLDHIKGSYKLRR-ATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       345 ~~m~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      -++....+.  +..+| ..|..+|.+++.++ +.+.+..+   .-+.+. .....+..-|.+++.+--|-+.|+++..
T Consensus       417 ~~is~~~ik--n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~  489 (557)
T KOG3785|consen  417 IRISGPEIK--NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI  489 (557)
T ss_pred             hhhcChhhh--hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence            776543332  45556 45567778888776 45444332   212222 2234555677788888777777776643

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.24  E-value=1.7e-05  Score=72.47  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=105.0

Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014502          137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ  215 (423)
Q Consensus       137 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  215 (423)
                      .+.+.+......+++.+....+++++..++.+.+... ....-..|.+++++.|.+.|..+.+++++..=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            3456678888888998888889999999999888732 121224466799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR  262 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  262 (423)
                      ++|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999998888777788888777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.007  Score=59.99  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=99.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG--IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA  184 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  184 (423)
                      |+.-....+.++...+-+.+-.++++++.-..  +.-+...-|.+|....+.. .....+..+++-. .. .|+      
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdn-yD-a~~------ 1053 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDN-YD-APD------ 1053 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhcc-CC-chh------
Confidence            56666677777787888888888887775421  1222334455555554443 3344455555533 11 122      


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                      +...+...+-+++|..+|+..-     .+....+.||.   .-+..|.|.++-++..      .+..|..+..+-.+.|.
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence            2233444555666666665542     23444444443   2234444444433321      12445555555555555


Q ss_pred             HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502          265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY  342 (423)
Q Consensus       265 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~  342 (423)
                      +.+|.+-|-+      ..|+..|..+++...+.|.+++-.+.+...+++...|...+    .||-+|++.++..+.++
T Consensus      1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~----eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS----ELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred             hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH----HHHHHHHHhchHHHHHH
Confidence            5555443321      12344455555555555555555555555555444444432    45555555555544443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=6.4e-05  Score=68.44  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=68.2

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      ..|+..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|.+++++..+.  .+.|......-...+.+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence            444555555566666666666666552  22  3334555555566666666666666541  22344444444455666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .++.+.|+++.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            66666666666666654211 33466666666666666666666665553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.20  E-value=3e-06  Score=47.91  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=17.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSV  212 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  212 (423)
                      +|+.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.19  E-value=0.0034  Score=54.56  Aligned_cols=299  Identities=8%  Similarity=0.025  Sum_probs=209.1

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH-
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL---ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD-  183 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-  183 (423)
                      +.-.--+...+.-.|++..|+.-|....+-    |+..|-++   ...|...|+...|+.=+....+   .+||-..-. 
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARi  110 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHH
Confidence            333444566677788999999999888775    44455444   4578888999999988888876   468853322 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH----------H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQT----------Y--ESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI  249 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~----------~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  249 (423)
                      .-...+.+.|.+++|..=|+...+....-+  ...          |  ...+..+.-.|+...|+.....+.+.. +.|.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda  189 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA  189 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence            123567899999999999999998743111  111          1  223445667899999999999998864 4567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH--HHHHH
Q 014502          250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLH--FFSGI  327 (423)
Q Consensus       250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~~~l  327 (423)
                      ..|..=..+|...|++..|+.=++...+..- .+..++-.+-..+...|+.+.+....++..+  ..|+...+  .|..+
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence            7777788899999999999988887776643 3555666677888899999999999999888  45765542  12211


Q ss_pred             ---------HHHHHhcCChhHHHHHHHHHHhCCCCCC--ChHhHHHHHHHHhhcccc-chHHHHHHHHhCCCccc-HHHH
Q 014502          328 ---------IRLYALSDRLDDVEYSVGRMGKQGLSFK--SAEDVEMVICSYFRCAAY-DRLDLFLDHIKGSYKLR-RATY  394 (423)
Q Consensus       328 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~p~-~~~~  394 (423)
                               +......++|.++.+..+...+.....+  ....+..+-.++...+++ +++....+.+.  +.|| ..++
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l  344 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHH
Confidence                     2334566778888887777766432211  123344556666667777 67777766665  3454 8888


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          395 DFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       395 ~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .-=.++|.-...++.|+.=|+.-.+
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            8888899888899999888877654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.19  E-value=0.00011  Score=56.94  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=56.9

Q ss_pred             hCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHh
Q 014502          102 KGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT  181 (423)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~  181 (423)
                      ...+.+......+...+.+.|++++|.+.|+.....+ +.+...|..+..++...|++++|...+++..+ . .+.+..+
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~   87 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-L-DPDDPRP   87 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCChHH
Confidence            3333344445555555566666666666666655543 22455555666666666666666666665554 1 1333444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      +..+...+...|++++|.+.|+...+.
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        88 YFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555566666666666666555554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0027  Score=52.87  Aligned_cols=187  Identities=11%  Similarity=0.068  Sum_probs=115.7

Q ss_pred             CCChhHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH
Q 014502          121 VQNVPFAMHVFTSMEAQ---G-IKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV  195 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~  195 (423)
                      ..+.++..+++.++...   | ..++.. .|..++-+....|+.+.|...++++..+  ++-+..+-..-...+-..|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence            34566666666666532   3 344443 4566666777778888888888887763  222222222222233446778


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFL  275 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  275 (423)
                      ++|+++++.+.+.+.. |..+|-.=+-..-..|+.-+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            8888888888777633 5666665555556667777777766666554 3567778888888888888888888888887


Q ss_pred             HhCCCccCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 014502          276 LGGGWKINENMAQKLVKCYCELG---RVDELEEQLETLTK  312 (423)
Q Consensus       276 ~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~  312 (423)
                      .-.. |.+...+..+.+.+...|   +++.|.+.+....+
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            7642 233444445555444433   35567777777776

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.17  E-value=0.00017  Score=55.97  Aligned_cols=91  Identities=7%  Similarity=0.039  Sum_probs=37.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR  299 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  299 (423)
                      +...+.+.|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|...|+
T Consensus        23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence            3333444444444444444443322 1223333344444444444444444444443332 2223333334444444444


Q ss_pred             HHHHHHHHHHHHh
Q 014502          300 VDELEEQLETLTK  312 (423)
Q Consensus       300 ~~~a~~~~~~~~~  312 (423)
                      +++|...++...+
T Consensus       101 ~~~A~~~~~~al~  113 (135)
T TIGR02552       101 PESALKALDLAIE  113 (135)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.16  E-value=4e-05  Score=55.05  Aligned_cols=72  Identities=17%  Similarity=0.266  Sum_probs=34.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKAR--------DFDSVDRFYEEMMSLGIIPSIPILEKVLEG  258 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  258 (423)
                      -+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|...+++|+..+|+.++..
T Consensus        34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~  113 (120)
T PF08579_consen   34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS  113 (120)
T ss_pred             HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            33333555555555555555554 445555555554444321        122334455555555555555555555544


Q ss_pred             H
Q 014502          259 L  259 (423)
Q Consensus       259 ~  259 (423)
                      +
T Consensus       114 L  114 (120)
T PF08579_consen  114 L  114 (120)
T ss_pred             H
Confidence            4

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.15  E-value=0.00023  Score=56.00  Aligned_cols=85  Identities=16%  Similarity=0.066  Sum_probs=36.9

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR  228 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  228 (423)
                      ..+...|++++|...|+.... ....|+.  ...-.|...+...|++++|+..++......  .....+....+.|.+.|
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence            444445555555555555544 2211111  122223444455555555555554432221  12333444445555555


Q ss_pred             CHHHHHHHHH
Q 014502          229 DFDSVDRFYE  238 (423)
Q Consensus       229 ~~~~a~~~~~  238 (423)
                      ++++|...|+
T Consensus       133 ~~~~A~~~y~  142 (145)
T PF09976_consen  133 DYDEARAAYQ  142 (145)
T ss_pred             CHHHHHHHHH
Confidence            5555555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.12  E-value=0.0019  Score=57.57  Aligned_cols=110  Identities=11%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC  295 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  295 (423)
                      +.+..|.-+...|+...|.++-.+.+    .||...|...+.+++..++|++..++...   .   -.+.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence            45555777788888888888766654    58888899999999999999987776432   1   13366888999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      +.|+..+|..+...+      +      +..-+..|.++|++.+|.+.-.+.
T Consensus       249 ~~~~~~eA~~yI~k~------~------~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI------P------DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HCCCHHHHHHHHHhC------C------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            999999988888772      2      334577789999999988775553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.12  E-value=3e-06  Score=46.71  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVINEMKFAEY  422 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  422 (423)
                      .+|+.++++|++.|++++|.++|++|++.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3799999999999999999999999999986

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.12  E-value=0.00029  Score=64.30  Aligned_cols=119  Identities=9%  Similarity=0.024  Sum_probs=54.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR  228 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  228 (423)
                      ++..+...++++.|..+|+++.+.   .|+.  ...+.+.+...++-.+|.+++++..+... -+......-...|.+.+
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence            333444445555555555555541   1332  22244444444555555555555443321 13333333344444555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          229 DFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFL  275 (423)
Q Consensus       229 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~  275 (423)
                      +++.|+++.+++.+.  .|+. .+|..|..+|...|+++.|+..++.+
T Consensus       249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            555555555554443  2332 24555555555555555555444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.10  E-value=0.0018  Score=63.75  Aligned_cols=156  Identities=8%  Similarity=-0.011  Sum_probs=90.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +-+.+...|+..|   .. -.+....=...|..|...|+...+-..|.+.|+..-+..- .+...+....+.|++..+++
T Consensus       469 ~~rK~~~~al~al---i~-alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we  543 (1238)
T KOG1127|consen  469 CMRKNSALALHAL---IR-ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWE  543 (1238)
T ss_pred             HhhhhHHHHHHHH---HH-HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHH
Confidence            3344455555553   22 2223333355688888888877777788888887776532 25567777788888888888


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .|..+.-..-+......-...|....-.|.+.++...|+..|+...+..+. |...|..+..+|.+.|.+..|.++|.+.
T Consensus       544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            887773332221100111122333334455566666666666666655433 5666666666666666666666666555


Q ss_pred             HH
Q 014502          241 MS  242 (423)
Q Consensus       241 ~~  242 (423)
                      ..
T Consensus       623 s~  624 (1238)
T KOG1127|consen  623 SL  624 (1238)
T ss_pred             Hh
Confidence            43

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.09  E-value=0.0014  Score=60.30  Aligned_cols=153  Identities=8%  Similarity=0.065  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLK  273 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~  273 (423)
                      .+...+.+++++..-..--+.+|...|+.-.+..-+..|..+|.+..+.+..+ +++.+++++.-+| .++.+.|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            45566666666654222234568888888888888999999999999988777 7888888888776 578889999999


Q ss_pred             HHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          274 FLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       274 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      --++. +..++..-...++.+...++-..|..+|+.....+..|+....+|..+++.-..-|+...+.++-+++..
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            76654 3345555567888889999999999999999998888888878899999999999999999998887765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.0025  Score=58.62  Aligned_cols=319  Identities=11%  Similarity=0.071  Sum_probs=197.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS-AVFNSLICACLCSGDV  159 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~  159 (423)
                      ++.|+++.|+..|    ..-....++|...|..-..+|++.|++++|.+=-.+-.+  +.|+- -.|.....++.-.|++
T Consensus        13 ~s~~d~~~ai~~~----t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   13 FSSGDFETAIRLF----TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             cccccHHHHHHHH----HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence            7899999999994    555566677889999999999999999998876655554  46664 4899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHhc------
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAM---NKWYAANIAA---GFSVNVQTYESLIHGSLKA------  227 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~---~~~~~~~~~~~li~~~~~~------  227 (423)
                      ++|+.-|.+-.+.  -+-|...++-+..++.......+.   -.++..+...   ........|..++..+-+.      
T Consensus        87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            9999999988762  133455666677666111000000   0111111100   0001122333343333221      


Q ss_pred             -CC---HHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHH
Q 014502          228 -RD---FDSVDRFYEE-----MMSLG-------IIP------------S----------IPILEKVLEGLCARRKLDRVK  269 (423)
Q Consensus       228 -g~---~~~a~~~~~~-----m~~~~-------~~p------------~----------~~~~~~li~~~~~~g~~~~a~  269 (423)
                       .+   ...+.-++..     +...|       ..|            |          ..-...+.++..+..+++.+.
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence             01   1111111100     00001       111            0          112445667777788899999


Q ss_pred             HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH----HHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL----LHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      +-+....+..  -+..-++..-.+|...|.+.+....-+...+.|...-..    ...+..+-.+|.+.++.+.++..|.
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~  322 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ  322 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            9998888754  455666777788999999888877777766655322111    1112223346667788889999888


Q ss_pred             HHHhCCCCCCChHhHHH---------------------------HHHHHhhcccc-chHHHHHHHHhCCCcccHHHHHHH
Q 014502          346 RMGKQGLSFKSAEDVEM---------------------------VICSYFRCAAY-DRLDLFLDHIKGSYKLRRATYDFL  397 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~---------------------------l~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~l  397 (423)
                      +.......   |+..+.                           =...+.+.|++ .++..|.+++... +-|...|.--
T Consensus       323 kaLte~Rt---~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR  398 (539)
T KOG0548|consen  323 KALTEHRT---PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR  398 (539)
T ss_pred             HHhhhhcC---HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence            87765443   333221                           13445566777 5788888888765 4468889999


Q ss_pred             HHHHHhcCChhHHHHH
Q 014502          398 VAGYRRAGLSGKLDSV  413 (423)
Q Consensus       398 ~~~~~~~g~~~~a~~~  413 (423)
                      .-+|.+.|.+..|++=
T Consensus       399 Aac~~kL~~~~~aL~D  414 (539)
T KOG0548|consen  399 AACYLKLGEYPEALKD  414 (539)
T ss_pred             HHHHHHHhhHHHHHHH
Confidence            9999999999988873

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=7.6e-05  Score=53.67  Aligned_cols=81  Identities=21%  Similarity=0.398  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCccCHHh
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARR--------KLDRVKSFLKFLLGGGWKINENM  286 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~  286 (423)
                      |-...|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++..        +.-+.+.+|+.|+..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            345567777778999999999999999999 899999999999887653        34467888888888889999999


Q ss_pred             HHHHHHHHHh
Q 014502          287 AQKLVKCYCE  296 (423)
Q Consensus       287 ~~~li~~~~~  296 (423)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9988887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.08  E-value=4.5e-06  Score=45.98  Aligned_cols=29  Identities=38%  Similarity=0.597  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLG  244 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~  244 (423)
                      +|+++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=0.0045  Score=59.97  Aligned_cols=24  Identities=4%  Similarity=-0.047  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHH
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVIN  415 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~  415 (423)
                      .....+.+.|.++|.+..|.+-|-
T Consensus      1146 ~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHh
Confidence            456677888888888887766553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.08  E-value=0.00083  Score=63.92  Aligned_cols=112  Identities=7%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      |.+-....+|.+|+.+++.++.+..  -..-|..+.+.|...|+++.|.++|-+.-         .++-.|.+|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence            3445566778888888887776542  23457788889999999999998885432         255578889999999


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      ++|.++-++...    |......|-+-..-+-+.|++.+|++++-.+
T Consensus       808 ~da~kla~e~~~----~e~t~~~yiakaedldehgkf~eaeqlyiti  850 (1636)
T KOG3616|consen  808 EDAFKLAEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLYITI  850 (1636)
T ss_pred             HHHHHHHHHhcC----chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence            999888776643    5555555777777778888888888877543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.07  E-value=0.014  Score=57.11  Aligned_cols=73  Identities=11%  Similarity=0.092  Sum_probs=36.0

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD  196 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~  196 (423)
                      +.|+.++|..+++.....+.. |..|...+-.+|...|+.++|..+|++..+.   .|+......+..+|.+.+++.
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk  127 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYK  127 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHH
Confidence            445555555555544444333 4445555555555555555555555555431   344444444445555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.01  E-value=0.00093  Score=52.50  Aligned_cols=20  Identities=15%  Similarity=0.368  Sum_probs=8.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 014502          223 GSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~  242 (423)
                      .+...|++++|...|+....
T Consensus        57 ~~~~~g~~~~A~~~l~~~~~   76 (145)
T PF09976_consen   57 AAYEQGDYDEAKAALEKALA   76 (145)
T ss_pred             HHHHCCCHHHHHHHHHHHHh
Confidence            33444444444444444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.92  E-value=0.028  Score=55.23  Aligned_cols=224  Identities=9%  Similarity=0.004  Sum_probs=140.0

Q ss_pred             HHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC
Q 014502           45 SRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV  121 (423)
Q Consensus        45 ~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~  121 (423)
                      +.+-+.....+......+.+.  .|+ ..|..++.+   .+.|+.++|..+    ++........|..+...+-..|.+.
T Consensus        18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~----Le~~~~~~~~D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKL----LEALYGLKGTDDLTLQFLQNVYRDL   90 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHH----HhhhccCCCCchHHHHHHHHHHHHH
Confidence            333333444455555555332  232 345666666   588999999987    5665555556899999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC-------
Q 014502          122 QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-------  194 (423)
Q Consensus       122 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-------  194 (423)
                      ++.++|..+|++..+.  .|+......+..+|++.+.+.+-.+.=-+|-+  .++-+...|=++++.....-.       
T Consensus        91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen   91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCccccc
Confidence            9999999999998876  67777888888889988887765555444443  223344455555554443211       


Q ss_pred             ---HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          195 ---VDAMNKWYAANIAAG-FSVNVQTYESLIHGSLKARDFDSVDRFY-EEMMSLGIIPSIPILEKVLEGLCARRKLDRVK  269 (423)
Q Consensus       195 ---~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  269 (423)
                         ..-|.+.++.+.+.+ -.-+..-...-...+-..|++++|.+++ ....+.-..-+...-+--+..+...+++.+..
T Consensus       167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~  246 (932)
T KOG2053|consen  167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF  246 (932)
T ss_pred             chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence               234666666666654 2112222222334455677788888887 33333333334444455566666777777777


Q ss_pred             HHHHHHHhCC
Q 014502          270 SFLKFLLGGG  279 (423)
Q Consensus       270 ~~~~~~~~~g  279 (423)
                      ++-.++...|
T Consensus       247 ~l~~~Ll~k~  256 (932)
T KOG2053|consen  247 ELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHhC
Confidence            7777777665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.89  E-value=0.00038  Score=61.25  Aligned_cols=130  Identities=7%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG  258 (423)
Q Consensus       180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  258 (423)
                      .+|..+++..-+.+..+.|.++|.+.++.+. .+...|-..... |...++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            3556666666666666666666666664321 122223222222 22234555566666666543 23445556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCccCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          259 LCARRKLDRVKSFLKFLLGGGWKINE---NMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       259 ~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +.+.|+.+.|..+|++.... +.++.   ..|...++.=.+.|+++.+..+.+.+.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666654 22222   3566666666666666666666666655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.83  E-value=0.00071  Score=55.15  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502          142 DSAVFNSLICACLC-----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT  216 (423)
Q Consensus       142 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  216 (423)
                      |..+|..+++.|.+     .|.++-....+..|.+ .|+.-|..+|+.|++.+=+ |.+- -..+|+.+           
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------  111 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------  111 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence            66666666666653     3667777777777777 7777777777777776654 2221 01111111           


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                          ...  .-.+-+-|++++++|...|+.||..|+..+++.|++.+.
T Consensus       112 ----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  112 ----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                111  112345566777777777777777777777777665544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.82  E-value=0.00018  Score=58.50  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=74.7

Q ss_pred             CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014502          176 KPNSKTYDAFISGFSSL-----GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP  250 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  250 (423)
                      ..|..+|..++..|.+.     |.++-....+..|.+.|+..|..+|+.|++.+=+ |.+-               |...
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~  107 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF  107 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence            46777888888777654     5667777777888888888888888888876654 2221               2211


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR  299 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  299 (423)
                      ......   -.-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus       108 fQ~~F~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  108 FQAEFM---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHhc---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            111111   1124567789999999999999999999999999988766

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.76  E-value=0.0014  Score=49.25  Aligned_cols=59  Identities=8%  Similarity=0.007  Sum_probs=24.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          289 KLVKCYCELGRVDELEEQLETLTKCNQSPE--VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+..++.+.|++++|...++.+........  ...  +..+...+...|+.++|...++++.+
T Consensus        44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA--LLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH--HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            344444444444444444444443221100  111  33344444444555555555544444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00093  Score=47.45  Aligned_cols=11  Identities=45%  Similarity=0.682  Sum_probs=4.0

Q ss_pred             CCHHHHHHHHH
Q 014502          157 GDVVTALSLFE  167 (423)
Q Consensus       157 g~~~~A~~~~~  167 (423)
                      |++++|...++
T Consensus        14 ~~~~~A~~~~~   24 (100)
T cd00189          14 GDYDEALEYYE   24 (100)
T ss_pred             hcHHHHHHHHH
Confidence            33333333333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00095  Score=47.40  Aligned_cols=56  Identities=18%  Similarity=0.108  Sum_probs=21.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          254 KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       254 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      .+...+...+++++|.+.++...+.. +.+..++..+...+...|+.++|...++..
T Consensus        39 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          39 NLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33333334444444444444433322 112223333334444444444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.73  E-value=0.002  Score=48.49  Aligned_cols=97  Identities=14%  Similarity=0.020  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CCCHHhHHHHHHH
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY-KPNSKTYDAFISG  188 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~  188 (423)
                      ..+...+.+.|++++|.+.|+.+.+....  .....+..+..++.+.|++++|.+.|+.......- +.....+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            33344444444444444444444432110  00223333444444444444444444444331100 0012233333344


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 014502          189 FSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~  208 (423)
                      +.+.|+.++|.+.++++.+.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHH
Confidence            44444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.70  E-value=0.014  Score=51.60  Aligned_cols=93  Identities=15%  Similarity=0.092  Sum_probs=44.3

Q ss_pred             HHHhc-CCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHHHHHH
Q 014502          258 GLCAR-RKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV----LLHFFSGI  327 (423)
Q Consensus       258 ~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~~~l  327 (423)
                      .|-.. |++++|.+.|++..+.    |.+. -..++..+...+.+.|++++|..+|+++.......+.    .-..|-..
T Consensus       123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a  202 (282)
T PF14938_consen  123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA  202 (282)
T ss_dssp             HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence            33344 5666666666655432    2110 1224455566666777777777777766553221110    00112233


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC
Q 014502          328 IRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       328 i~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      +-++...|++..|.+.+++..+.
T Consensus       203 ~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  203 ILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Confidence            33455566777777777766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.037  Score=49.59  Aligned_cols=188  Identities=9%  Similarity=0.025  Sum_probs=121.6

Q ss_pred             CCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          177 PNSKTYDAFI-SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG--SLKARDFDSVDRFYEEMMSLGIIPSIPILE  253 (423)
Q Consensus       177 p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  253 (423)
                      |...+|..+- .++.-.|+.++|.++-...++..   ....+...+++  +.-.++.+.|...|++-...+  ||-..-.
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence            4455665553 56677899999988877777653   22334444443  345678888888888776543  4433211


Q ss_pred             H---H----------HHHHHhcCCHHHHHHHHHHHHhCC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502          254 K---V----------LEGLCARRKLDRVKSFLKFLLGGG---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP  317 (423)
Q Consensus       254 ~---l----------i~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  317 (423)
                      .   .          -+-..+.|++..|.+.|.+.+...   ..|+...|-.......+.|+.++|..--+...+  +.|
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~  318 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDS  318 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCH
Confidence            1   1          123467899999999999988742   334555666666777889999999999888877  334


Q ss_pred             chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      .-.- .|..-..++...++|++|++-|++..+..-.+..-.++.....++-+..+
T Consensus       319 syik-all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  319 SYIK-ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence            3221 14444566677789999999998887755444445555555555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.63  E-value=0.002  Score=52.06  Aligned_cols=62  Identities=10%  Similarity=-0.019  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      .|..+...+...|++++|+..|++.......+  ...+|..+...+.+.|++++|++.++....
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444555555555555444332111  122444444555555555555555554443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.63  E-value=0.0056  Score=49.66  Aligned_cols=61  Identities=10%  Similarity=-0.001  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      +..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444555555555554443322111  23444444555555555555555555444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.61  E-value=0.0014  Score=57.73  Aligned_cols=128  Identities=13%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG  188 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  188 (423)
                      +|..+++...+.+.++.|..+|.+..+.+. .+..+|-..... |...++.+.|.++|+...+.  ++.+...|...+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence            455555555555566666666666654321 122333332222 22234455566666665542  34445555555666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNV----QTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      +.+.|+.+.|..+|++....  .|..    ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666665544  2222    3566666555566666666666665554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.031  Score=46.81  Aligned_cols=193  Identities=11%  Similarity=0.077  Sum_probs=140.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhC-CCCCH-hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKG-NESCL-DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD  158 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  158 (423)
                      +...++++.++++..+...+..+ -.++. ..|..++-+....|+.+.|...++++..+- +-+..+-..-.--+-..|+
T Consensus        23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~  101 (289)
T KOG3060|consen   23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN  101 (289)
T ss_pred             ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence            66778888888877766666555 22554 457778888889999999999999988763 2232222222223445789


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE  238 (423)
Q Consensus       159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  238 (423)
                      +++|.++|+...+. . +-|..++..=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.--++
T Consensus       102 ~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen  102 YKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             hhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            99999999999973 2 556777877777777778877888888887776 34599999999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 014502          239 EMMSLGIIPSIPILEKVLEGLCA---RRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       239 ~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~  278 (423)
                      ++.-.. +.+..-|..+.+.+.-   ..+.+.+.++|.+.++.
T Consensus       179 E~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  179 ELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            998753 2334445555555433   34567788889888875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.57  E-value=0.00015  Score=50.84  Aligned_cols=17  Identities=18%  Similarity=0.237  Sum_probs=6.5

Q ss_pred             HHHHHccCCHHHHHHHH
Q 014502          150 ICACLCSGDVVTALSLF  166 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~  166 (423)
                      ..+|.+.|++++|..++
T Consensus        32 a~~~~~~~~y~~A~~~~   48 (84)
T PF12895_consen   32 AQCYFQQGKYEEAIELL   48 (84)
T ss_dssp             HHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHH
Confidence            33333333333333333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.57  E-value=0.00021  Score=50.13  Aligned_cols=20  Identities=10%  Similarity=0.144  Sum_probs=8.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 014502          255 VLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~  274 (423)
                      +..++.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            33344444444444444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.55  E-value=0.048  Score=48.20  Aligned_cols=134  Identities=12%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHH
Q 014502          183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMS----LGIIPS--IPILEKV  255 (423)
Q Consensus       183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l  255 (423)
                      ...+..|...|++..|-+++.++-               ..|-+. |++++|++.|++..+    .| .+.  ...+..+
T Consensus        98 ~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~  161 (282)
T PF14938_consen   98 EKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKA  161 (282)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHH
Confidence            333445556666665555544433               344455 778888887776643    23 222  2346677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCc-----cCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCchHHHHHHHH
Q 014502          256 LEGLCARRKLDRVKSFLKFLLGGGWK-----INEN-MAQKLVKCYCELGRVDELEEQLETLTKCN--QSPEVLLHFFSGI  327 (423)
Q Consensus       256 i~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~l  327 (423)
                      ...+.+.|++++|.++|++.......     .+.. .+-..+-++...|+...|.+.++......  +..+....+...|
T Consensus       162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l  241 (282)
T PF14938_consen  162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL  241 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence            77788889999999999888765322     1221 23333446667889999999999887643  2222222224455


Q ss_pred             HHHHH
Q 014502          328 IRLYA  332 (423)
Q Consensus       328 i~~~~  332 (423)
                      +.+|-
T Consensus       242 ~~A~~  246 (282)
T PF14938_consen  242 LEAYE  246 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.54  E-value=0.0027  Score=51.31  Aligned_cols=80  Identities=5%  Similarity=-0.188  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS  366 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~  366 (423)
                      +..+...+...|++++|...|+........|.....+|..+...|...|++++|+..+++..+  +.|..+..+..+...
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i  115 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence            344444444455555555555554432212211111244445555555555555555555444  223334444444444


Q ss_pred             Hh
Q 014502          367 YF  368 (423)
Q Consensus       367 ~~  368 (423)
                      +.
T Consensus       116 ~~  117 (168)
T CHL00033        116 CH  117 (168)
T ss_pred             HH
Confidence            44

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.53  E-value=0.013  Score=47.50  Aligned_cols=91  Identities=9%  Similarity=0.000  Sum_probs=61.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA  184 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  184 (423)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++..+.  .+-+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence            445577777778888888888888888776533222  356777788888888888888888887762  1223455666


Q ss_pred             HHHHHHhcCCHHHHH
Q 014502          185 FISGFSSLGNVDAMN  199 (423)
Q Consensus       185 li~~~~~~~~~~~a~  199 (423)
                      +...+...|+...+.
T Consensus       112 lg~~~~~~g~~~~a~  126 (172)
T PRK02603        112 IAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHcCChHhHh
Confidence            666777766654443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.49  E-value=0.0038  Score=57.09  Aligned_cols=102  Identities=17%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD  229 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  229 (423)
                      ...+...|++++|++.|++..+.  -+-+...|..+..+|.+.|++++|+..+++....... +...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence            45566788999999999888862  2345667777788888899999999999888877533 67778888888888999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILEKVL  256 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~~li  256 (423)
                      +++|...|++..+.  .|+.......+
T Consensus        86 ~~eA~~~~~~al~l--~P~~~~~~~~l  110 (356)
T PLN03088         86 YQTAKAALEKGASL--APGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            99999998888775  35544444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.48  E-value=0.055  Score=46.49  Aligned_cols=179  Identities=13%  Similarity=0.009  Sum_probs=85.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhH---HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           73 SWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDE---YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        73 ~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      .|..-......|++++|.+.|    ++.....+.+...   .-.+..++-+.+++++|...|++..+.-..-...-|...
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f----~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQL----EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            444444446777777777774    3443333322222   234556667777777777777777665222111223333


Q ss_pred             HHHHHc--cC---------------C---HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          150 ICACLC--SG---------------D---VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG  209 (423)
Q Consensus       150 i~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  209 (423)
                      +.+.+.  .+               +   ..+|+..|+++.+                -|=...-..+|.+.+..+... 
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH-
Confidence            333221  00               1   1122233333332                222222334444333333221 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          210 FSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKSFLKFL  275 (423)
Q Consensus       210 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~  275 (423)
                        .-.. --.+..-|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.++...+
T Consensus       174 --la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 --LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             --HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence              0000 113345566667777777666666653  22333445556666666666666666655544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.077  Score=47.44  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS  366 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~  366 (423)
                      .+..+.-+...|+...|.++-.+.    -.|+..-  |-.-+.+|+..++|++..++.+.    ..   +|..|..++.+
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrf--w~lki~aLa~~~~w~eL~~fa~s----kK---sPIGyepFv~~  246 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRF--WWLKIKALAENKDWDELEKFAKS----KK---SPIGYEPFVEA  246 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHH--HHHHHHHHHhcCCHHHHHHHHhC----CC---CCCChHHHHHH
Confidence            333444455566665555554433    1255444  66666666666666665554322    11   25566666666


Q ss_pred             HhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502          367 YFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVI  414 (423)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  414 (423)
                      |.+.|....+..|...         ..+..-+..|.+.|++.+|.+.-
T Consensus       247 ~~~~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HHHCCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHH
Confidence            6666655333333222         11234445555555555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.45  E-value=0.0051  Score=56.23  Aligned_cols=98  Identities=14%  Similarity=0.059  Sum_probs=73.9

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..+++++|++.    +++.....+.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus        13 ~~~~~~~~Ai~~----~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         13 FVDDDFALAVDL----YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            678888888888    556666666778888888888888888888888888888763 225667888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          161 TALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +|+..|++..+   +.|+.......+
T Consensus        88 eA~~~~~~al~---l~P~~~~~~~~l  110 (356)
T PLN03088         88 TAKAALEKGAS---LAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHH---hCCCCHHHHHHH
Confidence            88888888876   245554444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.44  E-value=0.021  Score=54.70  Aligned_cols=64  Identities=14%  Similarity=0.055  Sum_probs=40.9

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL  243 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  243 (423)
                      +...|..+.-.+...|++++|...+++....+  |+...|..+...+...|+.++|.+.|++....
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34555555555555677777777777766653  46666666677777777777777777666543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.43  E-value=0.091  Score=47.85  Aligned_cols=369  Identities=11%  Similarity=0.048  Sum_probs=179.2

Q ss_pred             cHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCC--CH------
Q 014502           40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNES--CL------  108 (423)
Q Consensus        40 ~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~--~~------  108 (423)
                      .+.+|+++--.+.......+.+..+.-+   ...|-.+..+   ++.+.+++|++.+..+.++......|  |.      
T Consensus        49 ~grilnAffl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~  125 (549)
T PF07079_consen   49 GGRILNAFFLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF  125 (549)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence            3455666655555444555555543322   2334455555   68899999999987656664443332  22      


Q ss_pred             ---hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccC---------------CHHHHHHHH
Q 014502          109 ---DEYACLIALSGKVQNVPFAMHVFTSMEAQGIK----PDSAVFNSLICACLCSG---------------DVVTALSLF  166 (423)
Q Consensus       109 ---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g---------------~~~~A~~~~  166 (423)
                         .-=+..++.+.+.|++.++..+++++..+=++    =+..+||.++-.+.++=               .++-+.-..
T Consensus       126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~  205 (549)
T PF07079_consen  126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL  205 (549)
T ss_pred             hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence               22356677888999999999999998765333    47788888666665431               122222222


Q ss_pred             HHHHhc-----CCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          167 EIMVSS-----EEYKPNSKTYDAFISGFSSLG--NVDAMNKWYAANIAAGFSVNV-QTYESLIHGSLKARDFDSVDRFYE  238 (423)
Q Consensus       167 ~~m~~~-----~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~  238 (423)
                      .+|...     ..+.|.......++....-..  +..--.++++.-...-+.|+- -+...++..+.+  +.+++..+-+
T Consensus       206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce  283 (549)
T PF07079_consen  206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE  283 (549)
T ss_pred             HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence            333221     012233333333332222111  111111222222222233331 111222222222  3444444433


Q ss_pred             HHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh----------------------------
Q 014502          239 EMMSLGIIP----SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM----------------------------  286 (423)
Q Consensus       239 ~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~----------------------------  286 (423)
                      .+....+.+    =..+|..++....+.++...|.+.+.-+...  +|+...                            
T Consensus       284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y  361 (549)
T PF07079_consen  284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY  361 (549)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence            332221111    1234555555556666666665555544331  121111                            


Q ss_pred             -----------------HHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHH----HHHHHhc---CChh
Q 014502          287 -----------------AQKLV---KCYCELGR-VDELEEQLETLTKCNQSPEVLLHFFSGI----IRLYALS---DRLD  338 (423)
Q Consensus       287 -----------------~~~li---~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~~l----i~~~~~~---g~~~  338 (423)
                                       -..|+   .-+-+.|. -++|.++++.+.+  +.|....+ -|.+    =..|...   ..+.
T Consensus       362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec-~n~v~~fvKq~Y~qaLs~~~~~  438 (549)
T PF07079_consen  362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIEC-ENIVFLFVKQAYKQALSMHAIP  438 (549)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHH-HHHHHHHHHHHHHHHHhhhhHH
Confidence                             01111   11222333 5566666666666  33333221 1111    1122111   2233


Q ss_pred             HHHHHHHHHHhCCCCCCC---hHhHHHHH--HHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHH
Q 014502          339 DVEYSVGRMGKQGLSFKS---AEDVEMVI--CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV  413 (423)
Q Consensus       339 ~a~~~~~~m~~~~~~~~~---~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  413 (423)
                      +-..+-+-+.+.|+.|.+   ...-|.|.  .-+..+|+......+..-+. .+.|++.+|..+.-++....++++|+.+
T Consensus       439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~-~iaPS~~~~RLlGl~l~e~k~Y~eA~~~  517 (549)
T PF07079_consen  439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT-KIAPSPQAYRLLGLCLMENKRYQEAWEY  517 (549)
T ss_pred             HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333344444455665432   12223332  33445666655444444443 3578999999999999999999999999


Q ss_pred             HHHHHh
Q 014502          414 INEMKF  419 (423)
Q Consensus       414 ~~~m~~  419 (423)
                      +.+++-
T Consensus       518 l~~LP~  523 (549)
T PF07079_consen  518 LQKLPP  523 (549)
T ss_pred             HHhCCC
Confidence            988753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.098  Score=50.57  Aligned_cols=241  Identities=12%  Similarity=0.123  Sum_probs=131.2

Q ss_pred             hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCC---CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 014502           71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVF  146 (423)
Q Consensus        71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  146 (423)
                      ..+|..+-+- +..|+++.|..+++  ++.-....+|   +..-+...+.-+.+.|+.+....++-.|...   .+...+
T Consensus       507 ~iSy~~iA~~Ay~~GR~~LA~kLle--~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l  581 (829)
T KOG2280|consen  507 GISYAAIARRAYQEGRFELARKLLE--LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL  581 (829)
T ss_pred             ceeHHHHHHHHHhcCcHHHHHHHHh--cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence            4566666555 89999999999864  3322222222   5556677788888889988888888777653   122222


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhc---------------------------------CCCCCCHHhHHHHHHHHHhcC
Q 014502          147 NSLICACLCSGDVVTALSLFEIMVSS---------------------------------EEYKPNSKTYDAFISGFSSLG  193 (423)
Q Consensus       147 ~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------~~~~p~~~~~~~li~~~~~~~  193 (423)
                      ...++      +.-.|..+|.+..+.                                 .+..|+   ....-+.+.+..
T Consensus       582 ~~~l~------~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk  652 (829)
T KOG2280|consen  582 FMTLR------NQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSK  652 (829)
T ss_pred             HHHHH------hchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhh
Confidence            22221      111222222222210                                 111222   222333333333


Q ss_pred             CHHH----------HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          194 NVDA----------MNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR  262 (423)
Q Consensus       194 ~~~~----------a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  262 (423)
                      ...-          -+++.+.+... |..-...+.+--+.-+...|+..+|.++-.+.+    .||-..|-.-+.+++..
T Consensus       653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~  728 (829)
T KOG2280|consen  653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI  728 (829)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh
Confidence            3111          11122222211 222233334445555666777777777665554    57777777777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502          263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY  342 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~  342 (423)
                      +++++-+++-+....      +.-|..++.+|.+.|+.++|...+.....           +.-...+|.+.|++.+|.+
T Consensus       729 ~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad  791 (829)
T KOG2280|consen  729 KKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAAD  791 (829)
T ss_pred             hhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHH
Confidence            777776665443331      23466677777788888877777765432           2235666777777777766


Q ss_pred             HHHH
Q 014502          343 SVGR  346 (423)
Q Consensus       343 ~~~~  346 (423)
                      +--+
T Consensus       792 ~A~~  795 (829)
T KOG2280|consen  792 LAAE  795 (829)
T ss_pred             HHHH
Confidence            6544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.36  E-value=0.026  Score=44.00  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=39.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502          224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL  303 (423)
Q Consensus       224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a  303 (423)
                      +...|++++|.++|+-+...+ .-+..-|-.+.-.+-..|++++|+..|........ .|+..+-.+..++...|+.+.|
T Consensus        45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence            344455555555555444332 11222233333344444555555555555544432 2344444444555555555555


Q ss_pred             HHHHHHHHh
Q 014502          304 EEQLETLTK  312 (423)
Q Consensus       304 ~~~~~~~~~  312 (423)
                      .+.|+..+.
T Consensus       123 ~~aF~~Ai~  131 (157)
T PRK15363        123 IKALKAVVR  131 (157)
T ss_pred             HHHHHHHHH
Confidence            555554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.34  E-value=0.082  Score=45.44  Aligned_cols=177  Identities=11%  Similarity=0.068  Sum_probs=86.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTY---DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      ....+...|++++|.+.|+++...   -|+. ..-   -.+..++.+.+++++|...+++..+.-+.-...-|...+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            344445577777777777777652   2332 221   234466677777777777777777653322222333333333


Q ss_pred             Hh--cC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH
Q 014502          225 LK--AR---------------DF---DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE  284 (423)
Q Consensus       225 ~~--~g---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~  284 (423)
                      +.  .+               |.   .+|++.|+++.+               -|=...-..+|...+..+...   .-.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la~  176 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LAK  176 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HHH
Confidence            21  10               11   122233333322               222222333444333333221   000


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      . --.+.+.|.+.|.+..|..-++.+.+.-............++.+|...|..++|.++...+
T Consensus       177 ~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 Y-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             H-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1 1134555667777777777777766543222222223456667777777777776665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.34  E-value=0.01  Score=46.23  Aligned_cols=88  Identities=8%  Similarity=-0.032  Sum_probs=39.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      .+...|++++|.++|+-+....+. +..-|-.|.-++-..|++++|+..|......+ +-|...+-.+..++...|+.+.
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence            334444444444444444443322 33334444444444444455544444444433 1233344444444444444444


Q ss_pred             HHHHHHHHHh
Q 014502          268 VKSFLKFLLG  277 (423)
Q Consensus       268 a~~~~~~~~~  277 (423)
                      |.+.|+..+.
T Consensus       122 A~~aF~~Ai~  131 (157)
T PRK15363        122 AIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.33  E-value=0.018  Score=43.07  Aligned_cols=90  Identities=13%  Similarity=-0.009  Sum_probs=40.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502          258 GLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD  335 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g  335 (423)
                      ++-..|+.++|..+|++....|....  ...+-.+...|...|++++|..++++.......++....+...+..++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            33445555555555555555554332  1233344455555555555555555554432110000000112223445555


Q ss_pred             ChhHHHHHHHHH
Q 014502          336 RLDDVEYSVGRM  347 (423)
Q Consensus       336 ~~~~a~~~~~~m  347 (423)
                      +.++|++.+-..
T Consensus        90 r~~eAl~~~l~~  101 (120)
T PF12688_consen   90 RPKEALEWLLEA  101 (120)
T ss_pred             CHHHHHHHHHHH
Confidence            555555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.0041  Score=53.19  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCHHH
Q 014502          224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~  302 (423)
                      ..+.++|++|+..|.+..+.. +-|..-|..=..+|.+.|.++.|++=.+..+..  .|. ..+|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence            556677777777777766643 233444555566677777777776666665553  233 3466777777777777777


Q ss_pred             HHHHHHHHHhCCCCCchHH
Q 014502          303 LEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       303 a~~~~~~~~~~~~~p~~~~  321 (423)
                      |.+.|++..+  +.|+..+
T Consensus       168 A~~aykKaLe--ldP~Ne~  184 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNES  184 (304)
T ss_pred             HHHHHHhhhc--cCCCcHH
Confidence            7777776666  5566554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.29  E-value=0.032  Score=53.57  Aligned_cols=144  Identities=15%  Similarity=0.031  Sum_probs=100.1

Q ss_pred             CCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhc--------CCHHHHHHHH
Q 014502          137 QGIKPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSL--------GNVDAMNKWY  202 (423)
Q Consensus       137 ~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------~~~~~a~~~~  202 (423)
                      .+.+.+...|...+++....     ++...|.++|++..+.   .|+- ..|..+..++...        .++..+.+..
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            34456888888888875543     2367889999988873   5663 3444333322221        1244555555


Q ss_pred             HHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 014502          203 AANIAA-GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK  281 (423)
Q Consensus       203 ~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~  281 (423)
                      .+.... ....+...|..+.-.....|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++....  .
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~  483 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R  483 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            554443 123355778877666677899999999999998875  78889999999999999999999999999875  3


Q ss_pred             cCHHhH
Q 014502          282 INENMA  287 (423)
Q Consensus       282 ~~~~~~  287 (423)
                      |...+|
T Consensus       484 P~~pt~  489 (517)
T PRK10153        484 PGENTL  489 (517)
T ss_pred             CCCchH
Confidence            444443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.29  E-value=0.0044  Score=46.86  Aligned_cols=84  Identities=12%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEA---------------QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      |..++..++.++++.|+++....+.+..-.               ....|+..+..+++.+|+.+|++..|+++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            456677778888888887777777755421               12345566666666666666666666666666655


Q ss_pred             cCCCCCCHHhHHHHHHHHH
Q 014502          172 SEEYKPNSKTYDAFISGFS  190 (423)
Q Consensus       172 ~~~~~p~~~~~~~li~~~~  190 (423)
                      ..+++-+..+|..|++-..
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence            5555555566666654433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.24  E-value=0.025  Score=42.34  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHh-HHHHHHH
Q 014502          115 IALSGKVQNVPFAMHVFTSMEAQGIKPD--SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKT-YDAFISG  188 (423)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~-~~~li~~  188 (423)
                      ..++-..|+.++|+.+|++....|...+  ...+-.+...+...|++++|+.++++....   .|+   ... ...+--+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence            3455566777777777777777665543  234455566666777777777777776652   133   111 1122235


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      +...|+.++|++++-....    ++...|..-|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            5666777777777665542    23334444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.24  E-value=0.0014  Score=43.71  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=19.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .|++++|+++|+++...... +...+..+..+|.+.|++++|.++++.+.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444444433222 33333334444444444444444444433

...

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.12  E-value=0.14  Score=46.58  Aligned_cols=153  Identities=12%  Similarity=0.117  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV  291 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li  291 (423)
                      =+.+|...|+...+..-.+.|..+|-+..+.| +.++++.++++|..++ .|+...|.++|+--... ++.+...-+..+
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl  473 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL  473 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence            35667778888888888888888888888877 6678888888887665 57778888888865553 333333335566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502          292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA  371 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~  371 (423)
                      ..+...++-+.|..+|+...++- ..+....+|..+|+.-..-|+...+..+=++|.+  ..|. ..+......-|.-..
T Consensus       474 ~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQ-en~~evF~Sry~ik~  549 (660)
T COG5107         474 LFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQ-ENLIEVFTSRYAIKA  549 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCc-HhHHHHHHHHHhhhc
Confidence            77778888888888888554421 1122222388888888888888888877777766  2222 444444444444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.12  E-value=0.0016  Score=43.39  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=35.3

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      +.|++++|.++|+++...... +...+..+..+|.+.|++++|.++++++...   .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            456666666666666554222 5556666666666666666666666666652   3554444433

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.11  E-value=0.0033  Score=41.43  Aligned_cols=55  Identities=18%  Similarity=0.149  Sum_probs=27.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          292 KCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..+.+.|++++|.+.|+.+.+..  |+.... +..+...+...|++++|...|++..+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a-~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD--PDNPEA-WYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS--TTHHHH-HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555555555555555533  332221 45555555555555555555555544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.15  Score=43.15  Aligned_cols=132  Identities=10%  Similarity=0.044  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH---
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI---  186 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li---  186 (423)
                      +-+.++..+.-.|.+.-...++.+..+...+-++.....+.+.-.+.||.+.|...|++..+ ..-..|..+++.++   
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHhh
Confidence            34555555556666666666666666655444555666666666666666666666665554 22233333333332   


Q ss_pred             --HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          187 --SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL  243 (423)
Q Consensus       187 --~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  243 (423)
                        ..|.-.+++.+|...+.+....+.. |...-|.=.-+..-.|+..+|++.++.|+..
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              2344455566666666666555322 4444443333334456666666666666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.00  E-value=0.039  Score=43.25  Aligned_cols=58  Identities=19%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAAN  205 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  205 (423)
                      ...++..+...|++++|.++.+.+...  -+-|...|..+|.+|...|+..+|.++|+++
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444444555555555555555441  1234445555555555555555555555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.98  E-value=0.25  Score=44.25  Aligned_cols=266  Identities=11%  Similarity=0.042  Sum_probs=145.0

Q ss_pred             ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHH
Q 014502           70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAV  145 (423)
Q Consensus        70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~  145 (423)
                      |..-.-.++.+   .-.|++++|.+-    |+.|......-.--...|.----+.|+.+.|.+.-++.-+.  -|. .-.
T Consensus       117 DqepLIhlLeAQaal~eG~~~~Ar~k----feAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA  190 (531)
T COG3898         117 DQEPLIHLLEAQAALLEGDYEDARKK----FEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWA  190 (531)
T ss_pred             cchHHHHHHHHHHHHhcCchHHHHHH----HHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchH
Confidence            33333344444   456666666666    45554221111122333333344556666666666555443  222 345


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHH--h-cCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFS--S-LGNVDAMNKWYAANIAAGFSVNVQTYE-S  219 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~--~-~~~~~~a~~~~~~m~~~~~~~~~~~~~-~  219 (423)
                      +.+.+...+..|+++.|+++++.-+...-+.++..-  -..|+.+-.  . ..+...|...-.+..+  +.||..--. .
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~  268 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV  268 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence            666677777777777777777666553334444321  122222211  1 1223344433333332  355543322 2


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccC-HHhHHHHHHHHHhc
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG-GWKIN-ENMAQKLVKCYCEL  297 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~~  297 (423)
                      -..++.+.|+..++-.+++.+-+....|++.  ..  ..+.+.|+.-  ..-+++..+. .++|| ......+..+-...
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~l--Y~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda  342 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEPHPDIA--LL--YVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDA  342 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCCChHHH--HH--HHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence            3467899999999999999998876555532  22  2234555543  2223322211 13343 44555667777788


Q ss_pred             CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCC
Q 014502          298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGKQGLS  353 (423)
Q Consensus       298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~  353 (423)
                      |++..|..--+....  ..|....  |..|.+.-... |+-.++...+-+.......
T Consensus       343 ~e~~~ARa~Aeaa~r--~~pres~--~lLlAdIeeAetGDqg~vR~wlAqav~APrd  395 (531)
T COG3898         343 GEFSAARAKAEAAAR--EAPRESA--YLLLADIEEAETGDQGKVRQWLAQAVKAPRD  395 (531)
T ss_pred             cchHHHHHHHHHHhh--hCchhhH--HHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence            888887776666655  4576666  77777666544 8999999888887765443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.97  E-value=0.11  Score=52.08  Aligned_cols=51  Identities=16%  Similarity=0.087  Sum_probs=22.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      ..++...+..-|+...+.. +-|...|..+..+|..+|++..|.++|.++..
T Consensus       574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            3344444444444444332 12334444444444444444444444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.96  E-value=0.13  Score=42.94  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=36.8

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC
Q 014502           71 QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ  137 (423)
Q Consensus        71 ~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  137 (423)
                      ...|..-...+..|++.+|.+.|+.    +....+   --..+.-.++.++-+.|+++.|...+++..+.
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~----l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEK----LIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHH----HHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH----HHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445555555777777777777443    333322   12344556667777777777777777776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.42  Score=46.46  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=79.1

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502          285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI  364 (423)
Q Consensus       285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~  364 (423)
                      -+.+--+..+...|+-.+|.++-.+.+    .|+...  |-.=+.+++..++|++.+++-+.++.       |.-|.-..
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~--~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFV  751 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRL--WWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFV  751 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----Ccchhh--HHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHH
Confidence            344455566677888888888777664    377766  77778889999999988887766542       66777888


Q ss_pred             HHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          365 CSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINE  416 (423)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (423)
                      .+|.+.|+.+.+..|.-+..     +   +.-.+.+|.+.|++.+|.++--+
T Consensus       752 e~c~~~~n~~EA~KYiprv~-----~---l~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  752 EACLKQGNKDEAKKYIPRVG-----G---LQEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHhcccHHHHhhhhhccC-----C---hHHHHHHHHHhccHHHHHHHHHH
Confidence            99999998865555544332     1   11577888888888888876544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.93  E-value=0.0055  Score=40.35  Aligned_cols=50  Identities=14%  Similarity=0.162  Sum_probs=18.5

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .+.|++++|.+.|++..+.... +...+..+..++...|++++|...|++.
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3334444444444443333211 3333333333333444444444443333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.22  Score=47.90  Aligned_cols=235  Identities=12%  Similarity=0.102  Sum_probs=139.2

Q ss_pred             CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502          105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKP--------DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY  175 (423)
Q Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  175 (423)
                      .|.+..|..+.......-.++.|+..|-+.... |++.        +...-.+=|.+  --|++++|.++|-+|-+    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~dr----  762 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADR----  762 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccch----
Confidence            488888988888877777888888877655432 2211        11111122222  24788999998888765    


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502          176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI  251 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  251 (423)
                       .|     ..|..+.+.|++-.+.++++.   .|-..|    ...|+.+.+.+.....|++|.+.|..-..         
T Consensus       763 -rD-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------  824 (1189)
T KOG2041|consen  763 -RD-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------  824 (1189)
T ss_pred             -hh-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence             12     346677777887665555432   221212    45788888888888888888888765422         


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      -...+.++.+..++++...+...+     +.+....-.+.+++...|.-++|.+.+-+-.    .|       .+.+..|
T Consensus       825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-------kaAv~tC  888 (1189)
T KOG2041|consen  825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-------KAAVHTC  888 (1189)
T ss_pred             hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-------HHHHHHH
Confidence            113455666666666655554443     3344455667777788888787776664321    13       2335567


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCChHhH--------------HHHHHHHhhcccc-chHHHHHHHHh
Q 014502          332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDV--------------EMVICSYFRCAAY-DRLDLFLDHIK  384 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--------------~~l~~~~~~~~~~-~~~~~~~~~~~  384 (423)
                      ...++|.+|.++-++..-..     ..+.              ---|..+.+.|.. ++++++.+|.+
T Consensus       889 v~LnQW~~avelaq~~~l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  889 VELNQWGEAVELAQRFQLPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHHHHHHhccchh-----HHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            77777777777765532111     1111              0124445555655 67777777764

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.91  E-value=0.017  Score=49.53  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDS  232 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  232 (423)
                      +.+.+++.+|+..|.+..+.  .+-|.+-|..=-.+|++.|.++.|++=.+.....+.. ...+|..|-.+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            44455555555555555541  1223333444445555555555555555554443211 34455555555555555555


Q ss_pred             HHHHHHHHHHCCCCCCHHHH
Q 014502          233 VDRFYEEMMSLGIIPSIPIL  252 (423)
Q Consensus       233 a~~~~~~m~~~~~~p~~~~~  252 (423)
                      |++.|++..+  +.|+..+|
T Consensus       168 A~~aykKaLe--ldP~Ne~~  185 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESY  185 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHH
Confidence            5555554443  23444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.15  Score=43.12  Aligned_cols=148  Identities=11%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY  237 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  237 (423)
                      ..+..++.+++-..        .+.+.++.++.-.+.+.-....+.+..+...+.++.....|.+.-.+.||.+.|...|
T Consensus       164 ~~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf  235 (366)
T KOG2796|consen  164 AEESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF  235 (366)
T ss_pred             chhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence            33555555554433        3455666666667777777777777777665566777777777777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          238 EEMMSLGIIPSIPILEKVL-----EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       238 ~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      ++..+..-+.|..+++.++     ..|.-.+++..|...+.++.... +-|...-|.-.-+..-.|+..+|.+.++.|.+
T Consensus       236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7665443344444444333     23445567777777777776653 23444444444444556778888888888877


Q ss_pred             CC
Q 014502          313 CN  314 (423)
Q Consensus       313 ~~  314 (423)
                      ..
T Consensus       315 ~~  316 (366)
T KOG2796|consen  315 QD  316 (366)
T ss_pred             cC
Confidence            44

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.82  E-value=0.0098  Score=46.72  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPI  251 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  251 (423)
                      +...++..+...|++++|.++.+.+....+. |...|..+|.+|...|+...|.++|+.+..     .|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            3455666666777777777777777766533 666777777777777777777777766632     366666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.82  E-value=0.0082  Score=40.03  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMV  170 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~  170 (423)
                      +|..+...+...|++++|+..|++..
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai   30 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAI   30 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333333333333333333333

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.81  E-value=0.026  Score=42.74  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      |..++..+|.++++.|+.+....+++..   .|+.++...-.         +.         --......|+..+..+++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~---------~~~~spl~Pt~~lL~AIv   59 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD---------YPPSSPLYPTSRLLIAIV   59 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc---------cCCCCCCCCCHHHHHHHH
Confidence            4567788888888888888888887654   33333221000         00         111234566666667777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMS-LGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~  260 (423)
                      .+|+..|++..|+++.+...+ -+++.+..+|..|++-+.
T Consensus        60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            777767777777776666644 355555666666665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.79  E-value=0.39  Score=43.60  Aligned_cols=32  Identities=6%  Similarity=0.027  Sum_probs=25.1

Q ss_pred             CchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          317 PEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       317 p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      .+-+.  +..++.++.-.|+.++|.+..++|...
T Consensus       303 ~dYWd--~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWD--VATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHH--HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            44555  677888888888998888888888864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.75  E-value=0.3  Score=46.66  Aligned_cols=53  Identities=9%  Similarity=0.038  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +...+..-+.+...+..|.++|.+|-.           ...+++.....++|.+|..+-++..+
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCcc
Confidence            444444444556667778888887754           44567777888888888888776544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.75  E-value=0.21  Score=39.92  Aligned_cols=125  Identities=13%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CccCHHhH
Q 014502          211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG---WKINENMA  287 (423)
Q Consensus       211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~  287 (423)
                      .|++..--.|..+..+.|++.+|...|++....-..-|....-.+.++....+++..|...++.+.+..   -.||.  .
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence            455555556666666777777777777666554444555666666666666677777777666665542   22332  2


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502          288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE  341 (423)
Q Consensus       288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~  341 (423)
                      -.+...|...|++.+|+..|+.....-..|..... |..   .+.+.|+.+++.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~-Y~e---~La~qgr~~ea~  213 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY-YAE---MLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH-HHH---HHHHhcchhHHH
Confidence            33556666677777777777766664333332221 322   344555554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.70  E-value=0.0088  Score=39.88  Aligned_cols=26  Identities=8%  Similarity=0.203  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIA  207 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~  207 (423)
                      |..+...+...|++++|+..|++..+
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~   31 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIE   31 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33333333344444444444443333

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.70  E-value=0.46  Score=43.16  Aligned_cols=82  Identities=15%  Similarity=0.141  Sum_probs=56.1

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCCCHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG---IKPDSAVFNSLICACLC---SGDVVTALSLFEIMVSSEEYKPNSK  180 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~  180 (423)
                      +..+...++-.|....+++...++.+.+....   +.-+..+--...-++-+   .|+.++|++++..+.. ..-.++..
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChH
Confidence            45556667777888899999999999988752   11123333344455566   7899999999988554 44567777


Q ss_pred             hHHHHHHHH
Q 014502          181 TYDAFISGF  189 (423)
Q Consensus       181 ~~~~li~~~  189 (423)
                      +|..+.+.|
T Consensus       219 ~~gL~GRIy  227 (374)
T PF13281_consen  219 TLGLLGRIY  227 (374)
T ss_pred             HHHHHHHHH
Confidence            887776654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.67  E-value=0.045  Score=47.50  Aligned_cols=94  Identities=10%  Similarity=-0.002  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CccCHHhHHHH
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGG--WKINENMAQKL  290 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~l  290 (423)
                      |...+..+.+.|++++|...|+.+.+.-  |+.    ..+-.+...|...|++++|...|+.+.+.-  -+.....+-.+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            4443433344555666666565555432  221    344455555555666666666666555431  01112233334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 014502          291 VKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      ..++...|+.++|..+++.+.+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            4455556666666666666555

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.23  Score=43.01  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCccCHHhHHH
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR---RKLDRVKSFLKFLLGGGWKINENMAQK  289 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g~~~~~~~~~~  289 (423)
                      |...|-.|...|...|+++.|..-|....+.. .++...+..+..++...   ....++.++++++++.. +-|..+..-
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence            56666666667777777777766666665432 23333444444433222   23445666666666643 234445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          290 LVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      |...+...|++.+|...++.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            556666666666666666666664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.11  Score=44.85  Aligned_cols=86  Identities=10%  Similarity=0.094  Sum_probs=40.1

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCChHh
Q 014502          283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS---DRLDDVEYSVGRMGKQGLSFKSAED  359 (423)
Q Consensus       283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~  359 (423)
                      |...|-.|...|...|+++.|...|.+..+  +.|+.... +..+..++...   ....++.++|+++..  .+|.++.+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~-~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira  229 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEI-LLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA  229 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHH-HHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence            455555555555555555555555555544  22222111 22232222211   123455555555554  33444555


Q ss_pred             HHHHHHHHhhcccc
Q 014502          360 VEMVICSYFRCAAY  373 (423)
Q Consensus       360 ~~~l~~~~~~~~~~  373 (423)
                      ...|...+...|++
T Consensus       230 l~lLA~~afe~g~~  243 (287)
T COG4235         230 LSLLAFAAFEQGDY  243 (287)
T ss_pred             HHHHHHHHHHcccH
Confidence            55555555555555

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.64  E-value=0.068  Score=46.38  Aligned_cols=99  Identities=7%  Similarity=-0.035  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502          250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS  325 (423)
Q Consensus       250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~  325 (423)
                      ..|...+..+.+.|++++|...|+.+.+.-  |+    ...+..+..+|...|++++|...|+.+.+...........+-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            446666655567789999999999988753  33    246667888899999999999999998864322111222244


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          326 GIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       326 ~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      .+...+...|+.++|..+|++..+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5666777889999999999988874

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.53  E-value=0.21  Score=38.72  Aligned_cols=42  Identities=12%  Similarity=0.082  Sum_probs=19.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK  226 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  226 (423)
                      .++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            344444444455555555555544432 344444555555544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.45  E-value=0.35  Score=38.74  Aligned_cols=146  Identities=15%  Similarity=0.103  Sum_probs=109.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG  298 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  298 (423)
                      .+..+..+.=+++...+-..+  +-...|+...-..+..+....|+..+|...|++....-+..|..+.-.+..+....+
T Consensus        61 ~~~~a~~q~ldP~R~~Rea~~--~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~  138 (251)
T COG4700          61 TLLMALQQKLDPERHLREATE--ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHHhcChhHHHHHHHH--HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence            444555555566655443222  234578888888899999999999999999999998767788889989999999999


Q ss_pred             CHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc
Q 014502          299 RVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~---~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~  373 (423)
                      +...|...++++.+.+   -.|+.    .-.+...|...|+..+|+.-|+...+.-  | ++.........+.++|+.
T Consensus       139 ~~A~a~~tLe~l~e~~pa~r~pd~----~Ll~aR~laa~g~~a~Aesafe~a~~~y--p-g~~ar~~Y~e~La~qgr~  209 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAFRSPDG----HLLFARTLAAQGKYADAESAFEVAISYY--P-GPQARIYYAEMLAKQGRL  209 (251)
T ss_pred             cHHHHHHHHHHHhhcCCccCCCCc----hHHHHHHHHhcCCchhHHHHHHHHHHhC--C-CHHHHHHHHHHHHHhcch
Confidence            9999999999988754   23443    4467788999999999999999998742  2 255555555566666644

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.44  E-value=0.031  Score=47.49  Aligned_cols=105  Identities=11%  Similarity=0.147  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502          140 KPDSAVFNSLICACLCS-----GDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV  214 (423)
Q Consensus       140 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  214 (423)
                      +.|..+|-..+..+...     +.++-....++.|.+ .|+..|..+|+.||+.+-+..-.                |. 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfi----------------P~-  125 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFI----------------PQ-  125 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccc----------------cH-
Confidence            34677777777776643     556666677777777 78888888888877766443221                11 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                      ..+....-.|-+  +-+-+++++++|...|+.||-.+-..++++|++.+-
T Consensus       126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            111111111111  223355666666666666666666666666665554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.35  E-value=0.068  Score=47.98  Aligned_cols=274  Identities=13%  Similarity=0.048  Sum_probs=156.2

Q ss_pred             ChhhHHHHHHH---HhcCCHHHHHHHHHHHHHHHhhCCCCCH----hHHHHHHHHHhcCCChhHHHHHHHHHH--HC--C
Q 014502           70 SQFSWDALITS---LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSME--AQ--G  138 (423)
Q Consensus        70 ~~~~~~~li~~---~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~--~~--g  138 (423)
                      +...+...+.+   |+.|+....+..    |+...+.|..|.    .+|..|.++|.-.+++++|.++...=.  .+  |
T Consensus        14 ~~SCleLalEGERLck~gdcraGv~f----f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg   89 (639)
T KOG1130|consen   14 DRSCLELALEGERLCKMGDCRAGVDF----FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG   89 (639)
T ss_pred             hhHHHHHHHHHHHHHhccchhhhHHH----HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence            34456666666   788888888888    566666666553    447777778888889999988753211  10  0


Q ss_pred             CC-CCHHHHHHHHHHHHccCCHHHHHHHHHHH----Hhc-CCCCCCHHhHHHHHHHHHhcCC------------------
Q 014502          139 IK-PDSAVFNSLICACLCSGDVVTALSLFEIM----VSS-EEYKPNSKTYDAFISGFSSLGN------------------  194 (423)
Q Consensus       139 ~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-~~~~p~~~~~~~li~~~~~~~~------------------  194 (423)
                      -+ -...+...+.+.+--.|.+++|+-...+-    ++. ..+. ....+-.|.+.|...|+                  
T Consensus        90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~  168 (639)
T KOG1130|consen   90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT  168 (639)
T ss_pred             chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence            00 01122223334444456666665432211    110 0111 12233345555554443                  


Q ss_pred             --HHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhc
Q 014502          195 --VDAMNKWYAANIA----AGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMM----SLGIIP-SIPILEKVLEGLCAR  262 (423)
Q Consensus       195 --~~~a~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~p-~~~~~~~li~~~~~~  262 (423)
                        ++.|.++|.+=.+    .|- ..--..|..|-+.|.-.|+++.|+..-+.-.    +-|-.. ....+..+.+++.-.
T Consensus       169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence              2344555543221    110 0123456677777777899999987654432    223221 234677888888889


Q ss_pred             CCHHHHHHHHHHHHhC----CC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CchHHHHHHHHHHHHH
Q 014502          263 RKLDRVKSFLKFLLGG----GW-KINENMAQKLVKCYCELGRVDELEEQLETLTK----CNQS-PEVLLHFFSGIIRLYA  332 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-p~~~~~~~~~li~~~~  332 (423)
                      |+++.|.+.|+.-...    |- ........+|...|.-..+++.|+.++..-..    .+-. -....  +=+|-.+|.
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra--cwSLgna~~  326 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA--CWSLGNAFN  326 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence            9999999888875432    21 12344556688888888888888888776432    1111 11222  456788888


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 014502          333 LSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       333 ~~g~~~~a~~~~~~m~~~  350 (423)
                      ..|..++|+.+.+.-.+.
T Consensus       327 alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  327 ALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            888888888877665543

>PRK15331 chaperone protein SicA; Provisional

Probab=96.34  E-value=0.37  Score=37.94  Aligned_cols=88  Identities=5%  Similarity=-0.001  Sum_probs=61.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502          223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  302 (423)
                      -+...|++++|..+|+-+...+ .-+..-|..|...+-..+++++|...|......+. -|+..+-....+|...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence            3456788888888888876654 23344455566666677888888888887766543 344444456778888888888


Q ss_pred             HHHHHHHHHh
Q 014502          303 LEEQLETLTK  312 (423)
Q Consensus       303 a~~~~~~~~~  312 (423)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            8888888776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.34  E-value=0.035  Score=37.41  Aligned_cols=52  Identities=2%  Similarity=0.002  Sum_probs=21.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      |.+.+++++|.++++.+...++. +...|......+.+.|++++|.+.|+...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33444444444444444443322 33333334444444444444444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.17  E-value=0.045  Score=36.82  Aligned_cols=54  Identities=19%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      .|.+.+++++|.++++.+.... +.+...+.....++.+.|++++|.+.|+...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3444455555555555555432 22333444444455555555555555555544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.14  E-value=0.7  Score=39.19  Aligned_cols=184  Identities=15%  Similarity=0.028  Sum_probs=98.1

Q ss_pred             CcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC---CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 014502           68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNES---CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA  144 (423)
Q Consensus        68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  144 (423)
                      .|-...|+..+..++.|++++|.+.    |+.+....+-   ...+--.++.++-+.++++.|+..+++....-......
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~----fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKY----FEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            3456678888888888888888888    5566555542   45556667777778888888888888877653222223


Q ss_pred             HHHHHHHHHHcc-------CCHHHHH---HHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502          145 VFNSLICACLCS-------GDVVTAL---SLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV  214 (423)
Q Consensus       145 ~~~~li~~~~~~-------g~~~~A~---~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  214 (423)
                      .|-..|.+++.-       .+...+.   .-|++..++   -||+             .-...|..-...+...     .
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS-------------~Ya~dA~~~i~~~~d~-----L  166 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNS-------------RYAPDAKARIVKLNDA-----L  166 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCC-------------cchhhHHHHHHHHHHH-----H
Confidence            444445544421       2222222   222222221   1222             1111111111111110     0


Q ss_pred             HHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          215 QTY-ESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       215 ~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .-+ -.+.+-|.+.|.+..|..-+++|.+. .+-+   ...+-.+..+|...|-.++|.+.-+-+..
T Consensus       167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            001 12345667777777777777777665 1111   23345556666666776666666555544

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.11  E-value=0.058  Score=45.95  Aligned_cols=136  Identities=14%  Similarity=0.174  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 014502           85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKV-----QNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV  159 (423)
Q Consensus        85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  159 (423)
                      ++.+++-.++..|+.. +.+..|..+|-..+..+...     +.++-.-..+..|.+.|+..|..+|+.|++.+-+.   
T Consensus        45 ~pTK~Lv~~e~~F~aa-~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg---  120 (406)
T KOG3941|consen   45 EPTKSLVHVEKQFEAA-EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG---  120 (406)
T ss_pred             Cccccccchhhhhhcc-CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc---
Confidence            3344444444335543 33346888999988888643     56777777888999999999999999888765432   


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHH
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD-SVDRFYE  238 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~  238 (423)
                                    .+.|.. .+....-.|-+  +-+=++.++++|...|+.||-.+-..|++++.+.+..- +..++.-
T Consensus       121 --------------kfiP~n-vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~y  183 (406)
T KOG3941|consen  121 --------------KFIPQN-VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLY  183 (406)
T ss_pred             --------------ccccHH-HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHH
Confidence                          222322 22222222222  22347889999999999999999999999999887653 3444444


Q ss_pred             HHH
Q 014502          239 EMM  241 (423)
Q Consensus       239 ~m~  241 (423)
                      .|.
T Consensus       184 WmP  186 (406)
T KOG3941|consen  184 WMP  186 (406)
T ss_pred             hhh
Confidence            443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.10  E-value=0.43  Score=45.48  Aligned_cols=165  Identities=14%  Similarity=0.077  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-----HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS-----KTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQ  215 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~  215 (423)
                      ....++...+-.|+-+.+++.+.+-.+..++.-..     .+|+..+..++.    ..+.+.|.++++.+.+.  -|+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            34456666667788888888888877644443332     235555544443    34677888888888876  56766


Q ss_pred             HHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH-
Q 014502          216 TYESLI-HGSLKARDFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL-  290 (423)
Q Consensus       216 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-  290 (423)
                      .|...- +.+...|++++|++.|++......   +.....+--+.-.+....++++|.+.+..+.+..- -...+|.-+ 
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~  346 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence            665443 456677899999999987653111   11223344455567778899999999998887532 223333332 


Q ss_pred             HHHHHhcCCH-------HHHHHHHHHHHh
Q 014502          291 VKCYCELGRV-------DELEEQLETLTK  312 (423)
Q Consensus       291 i~~~~~~g~~-------~~a~~~~~~~~~  312 (423)
                      ..++...|+.       ++|.++|.++..
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            2344556777       777777777643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.08  E-value=0.41  Score=45.03  Aligned_cols=156  Identities=8%  Similarity=0.042  Sum_probs=82.5

Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          154 LCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                      .-.++++++.++.+.-.-...++  ..-.+.++..+-+.|..+.|+++..+         ..   .-.+...+.|+++.|
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIA  337 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHH
Confidence            34566666665554111101122  33466677777777777777766332         21   122334566777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          234 DRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      .++.++      ..+...|..|.+...+.|+++.|.+.+.+..+         +..|+-.|.-.|+.+...++.+.....
T Consensus       338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            664322      23566777777777777777777777665433         445555666677776666666666554


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR  346 (423)
Q Consensus       314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~  346 (423)
                      |.        +|....++...|+.++..+++.+
T Consensus       403 ~~--------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  403 GD--------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             T---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cC--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            42        45555566666777777666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.08  E-value=0.7  Score=38.56  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      ..+...|++++|.+.|+.+.....-.|- ....-.+..++.+.|++++|...++++.+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344556666666666666542111111 122333445555666666666666665554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.38  Score=42.22  Aligned_cols=118  Identities=8%  Similarity=0.039  Sum_probs=75.6

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH----hHHHHHHHHHhcCCHH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN----MAQKLVKCYCELGRVD  301 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~  301 (423)
                      -.|+.-+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..+|..    +-..+.-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            456666776777777654 3556667777777778888887777777777654 233432    2233344556678888


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      +|++.-++..+.+. .|.+.  -.+....+-..|+..++.++..+-.
T Consensus       193 dAEk~A~ralqiN~-~D~Wa--~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  193 DAEKQADRALQINR-FDCWA--SHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             hHHHHHHhhccCCC-cchHH--HHHHHHHHHhcchhhhHHHHHHhcc
Confidence            88887777766331 23343  4566666777788888877766543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.01  E-value=0.45  Score=35.77  Aligned_cols=138  Identities=12%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV  340 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a  340 (423)
                      -.|.+++..++..+...+.   +..-+|.+|--....-+-+-..++++.+-+   ..|.            ..+|++...
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi------------s~C~NlKrV   75 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI------------SKCGNLKRV   75 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G------------GG-S-THHH
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc------------hhhcchHHH
Confidence            3566677777777666542   333344444333333333334444444432   1111            113333333


Q ss_pred             HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      ...+-.   .|.   ....+...+.....+|..+.++.+..-+.+.-.+++...-.+..+|.+.|+..++.+++++.-++
T Consensus        76 i~C~~~---~n~---~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAK---RNK---LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHH---TT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHH---hcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            333322   112   14445555666666666666554444443344677777777888888888888888888888777


Q ss_pred             CC
Q 014502          421 EY  422 (423)
Q Consensus       421 g~  422 (423)
                      |+
T Consensus       150 G~  151 (161)
T PF09205_consen  150 GL  151 (161)
T ss_dssp             T-
T ss_pred             ch
Confidence            75

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.99  E-value=0.046  Score=37.40  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      +++.+...|...|++++|...|++..+.    |........++..+...|...|++++|++.+++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444555555555555555444321    1100011122444555555555555555555443

...

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.98  E-value=0.46  Score=35.68  Aligned_cols=63  Identities=22%  Similarity=0.294  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ  315 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  315 (423)
                      +...++.+...|+-++..+++.++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-++|.
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3334444455555555555555554322 34444444555555555555555555555554443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.95  E-value=1.2  Score=40.17  Aligned_cols=279  Identities=15%  Similarity=0.115  Sum_probs=150.1

Q ss_pred             CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHHhcCCHH
Q 014502          121 VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA--CLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFSSLGNVD  196 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~  196 (423)
                      .|+-..|.++-.+-.+. +.-|....-.++.+  -.-.|+++.|.+-|+.|..    .|....  ..-|.-.--+.|+.+
T Consensus        97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHH
Confidence            45666666555443321 12233333333332  2345777788888877775    244332  222333334567777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH--HHHHHHHHH---hcCCHHHHHH
Q 014502          197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPI--LEKVLEGLC---ARRKLDRVKS  270 (423)
Q Consensus       197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~--~~~li~~~~---~~g~~~~a~~  270 (423)
                      .|.++-++.-..-.. -...+...+...|..|+++.|+++.+.-++. -+.++..-  -..++.+-.   -.-+...|..
T Consensus       172 aAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         172 AARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            777776666554322 3455667777777888888888877765442 33444322  222332211   1234455555


Q ss_pred             HHHHHHhCCCccCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          271 FLKFLLGGGWKINENM-AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       271 ~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .-.+..+  +.||..- -..-..++.+.|+..++-.+++.+=+....|+...      +..+.+.|+  .+.+-+++...
T Consensus       251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~------lY~~ar~gd--ta~dRlkRa~~  320 (531)
T COG3898         251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL------LYVRARSGD--TALDRLKRAKK  320 (531)
T ss_pred             HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH------HHHHhcCCC--cHHHHHHHHHH
Confidence            5444444  4555432 22234677888888888888888877654444322      222344444  34444443332


Q ss_pred             -CCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 014502          350 -QGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA-GLSGKLDSVINE  416 (423)
Q Consensus       350 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~  416 (423)
                       ..+.|++..+--.+..+-...|++..+..--+... ...|....|..|.+.-.-. |+-.++...+-+
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~-r~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA-REAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh-hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence             23566667777777777777777753322222221 1356667777777665444 777776665544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.94  E-value=1.1  Score=39.72  Aligned_cols=130  Identities=12%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHHhcCCC--CCCHHhHHHHHHHHHhcCC-
Q 014502          124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLC--SG----DVVTALSLFEIMVSSEEY--KPNSKTYDAFISGFSSLGN-  194 (423)
Q Consensus       124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~-  194 (423)
                      +++...+++.|.+.|+.-+..+|-+.......  ..    ....|..+|+.|++...+  .++..++..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34455566666666666555554442222222  11    234566666666663222  1233344444433  2222 


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-C--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          195 ---VDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKAR-D--FDSVDRFYEEMMSLGIIPSIPILEKV  255 (423)
Q Consensus       195 ---~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g-~--~~~a~~~~~~m~~~~~~p~~~~~~~l  255 (423)
                         .+.++++|+.+.+.|+..+-. -+.+-+-++.... +  ..++.++++.+.+.|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               244556666666655544322 1122222222111 1  33455566666666666655555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.89  E-value=0.19  Score=45.30  Aligned_cols=284  Identities=12%  Similarity=-0.006  Sum_probs=128.0

Q ss_pred             HHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH--h-cCCCC-CCHHhHHHHHHH
Q 014502          117 LSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMV--S-SEEYK-PNSKTYDAFISG  188 (423)
Q Consensus       117 ~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~--~-~~~~~-p~~~~~~~li~~  188 (423)
                      -+++.|+......+|+...+.|.. |    ..+|..+.++|.-.+++++|+++-..=.  . ..|-+ -...+...|.+.
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            467888888888888888887743 3    3356666777777777888776543110  0 00000 111223334444


Q ss_pred             HHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          189 FSSLGNVDAMNKWYAANI----AAGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR  263 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  263 (423)
                      +--.|.+++|.-+-.+-.    +.|- ......+..+.+.|...|+.-....    -.+.|-.++..+           .
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~-----------~  169 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT-----------S  169 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------H
Confidence            445566666654433221    1111 0122333445555554442110000    000011111110           0


Q ss_pred             CHHHHHHHHHHH----HhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCchHHHHHHHHHHHHHhc
Q 014502          264 KLDRVKSFLKFL----LGGGWK-INENMAQKLVKCYCELGRVDELEEQLETL----TKCNQSPEVLLHFFSGIIRLYALS  334 (423)
Q Consensus       264 ~~~~a~~~~~~~----~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~~~li~~~~~~  334 (423)
                      .++.|.++|.+=    .+.|-. .-...|..|...|.-.|+++.|+...+.=    .+.|-.....- .+..+-.++.-.
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRR-A~sNlgN~hifl  248 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERR-AHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcccchhhhhh
Confidence            011222222211    111100 11223444555555556666665544331    22222111111 155566666666


Q ss_pred             CChhHHHHHHHHHHh----CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC-----CCcccHHHHHHHHHHHHhc
Q 014502          335 DRLDDVEYSVGRMGK----QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG-----SYKLRRATYDFLVAGYRRA  404 (423)
Q Consensus       335 g~~~~a~~~~~~m~~----~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~  404 (423)
                      |+++.|.+.|+....    -|-......+--+|...|.-..+++ ++....+.+.-     ...-....+.+|..++...
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al  328 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL  328 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence            666666666654332    1211111333344445554444443 23333222210     0111356788888888888


Q ss_pred             CChhHHHHHHHHH
Q 014502          405 GLSGKLDSVINEM  417 (423)
Q Consensus       405 g~~~~a~~~~~~m  417 (423)
                      |..++|+.+.+.-
T Consensus       329 g~h~kAl~fae~h  341 (639)
T KOG1130|consen  329 GEHRKALYFAELH  341 (639)
T ss_pred             hhHHHHHHHHHHH
Confidence            8888888877654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.86  E-value=2.5  Score=43.69  Aligned_cols=91  Identities=10%  Similarity=0.042  Sum_probs=58.2

Q ss_pred             ccCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 014502          281 KINENM----AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS  356 (423)
Q Consensus       281 ~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  356 (423)
                      .|+...    |.+..+-+...+.+++|.-.|+..-+           ..-.+.+|..+|+|.+|+.+..++....-.  -
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de--~  998 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKALKAYKECGDWREALSLAAQLSEGKDE--L  998 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH--H
Confidence            355544    44444555567788888877776543           345678888899999999988887642110  0


Q ss_pred             hHhHHHHHHHHhhcccc-chHHHHHHHHh
Q 014502          357 AEDVEMVICSYFRCAAY-DRLDLFLDHIK  384 (423)
Q Consensus       357 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~  384 (423)
                      ...-..|+.-+...++. ||+++..+...
T Consensus       999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  999 VILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            11115566777777776 77777776654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.85  E-value=0.32  Score=44.92  Aligned_cols=63  Identities=13%  Similarity=0.081  Sum_probs=33.3

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +...++.+..+|.+.|++++|...|++..+.  .|+.    .+|..+..+|...|+.++|+..+++..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555555555555555555543  2332    2355555555555555555555555554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.85  E-value=0.04  Score=37.74  Aligned_cols=23  Identities=13%  Similarity=0.346  Sum_probs=9.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAA  204 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~  204 (423)
                      +..+..++...|++++|++++++
T Consensus        49 ~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen   49 LNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            33344444444444444444443

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.73  E-value=2  Score=41.45  Aligned_cols=121  Identities=11%  Similarity=0.014  Sum_probs=72.1

Q ss_pred             HHHHHhcCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYE------EMMSLGI---IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV  291 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~------~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li  291 (423)
                      ...+...|+.++|..+.-      .+.+-+-   ..+..+...+..-+.+...+..|-++|..|-+.         ..++
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV  780 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV  780 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence            344555677777765531      1111111   122334444444455566677777777766442         2456


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCchHHH---------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          292 KCYCELGRVDELEEQLETLTKCNQSPEVLLH---------FFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~---------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                      ......+++++|.++-+...+  ..|+....         -|...-.+|.+.|+-.+|.++++++....+
T Consensus       781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav  848 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV  848 (1081)
T ss_pred             hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence            667778888888888877665  23333211         034455778888999999999988876544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.72  E-value=0.21  Score=46.04  Aligned_cols=65  Identities=15%  Similarity=0.127  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      .+...|+.+..+|...|++++|+..|++..+   +.|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3566888888888888888888888888776   24664    34777888888888888888888888764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.67  E-value=0.73  Score=35.68  Aligned_cols=85  Identities=9%  Similarity=-0.018  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      ..++..+.+.+.+.....+++.+...+. .+...+|.++..|++.+ ..+..+.+..  .     .+......+++.|.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence            3444555555555556666655555542 35555566666665442 2222233221  1     222333345555556


Q ss_pred             cCCHHHHHHHHHHH
Q 014502          192 LGNVDAMNKWYAAN  205 (423)
Q Consensus       192 ~~~~~~a~~~~~~m  205 (423)
                      .+.++++..++..+
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            66666666665554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.33  Score=43.81  Aligned_cols=96  Identities=13%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSL-----GI---------IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMA  287 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~-----~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~  287 (423)
                      +.|.+.|++..|..-|++..+.     +.         ..-..++..+.-++.+.+++..|++.-++.+..+ ++|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            4466677777777766664321     11         1112334444455555566666655555555543 2333333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      -.=..+|...|+++.|+..|+++.+  ..|+..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nk  325 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALK--LEPSNK  325 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcH
Confidence            3445555555666666666666555  334443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.41  E-value=2.3  Score=39.74  Aligned_cols=166  Identities=9%  Similarity=0.054  Sum_probs=86.8

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD  229 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  229 (423)
                      |.-.-+..+...-++.-.+..+   +.||..+.-.+ -+--....+.+++++|++..+.|-.  ..--....   ...|.
T Consensus       175 Mq~AWRERnp~aRIkaA~eALe---i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~---~~~g~  245 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALE---INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEA--SLGKSQFL---QHHGH  245 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHH---hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHH--hhchhhhh---hcccc
Confidence            3333444555555555555544   23554332222 2333455678888888877654310  00000000   01111


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLE  308 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~  308 (423)
                            .++........|-..+=..+..++-+.|+.++|.+.+++|.+.--. ....+...|+.++...+.+.++..++.
T Consensus       246 ------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  246 ------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             ------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                  1122222222333333344556666778888888888888764211 234466778888888888888888888


Q ss_pred             HHHhCCCCCchHHHHHHHHHHHH
Q 014502          309 TLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       309 ~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      +-.+.. -|...+..|+..+-.+
T Consensus       320 kYdDi~-lpkSAti~YTaALLka  341 (539)
T PF04184_consen  320 KYDDIS-LPKSATICYTAALLKA  341 (539)
T ss_pred             Hhcccc-CCchHHHHHHHHHHHH
Confidence            764322 3444554577655433

The molecular function of this protein is uncertain.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.36  E-value=3  Score=40.66  Aligned_cols=240  Identities=14%  Similarity=0.102  Sum_probs=143.7

Q ss_pred             CcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH----------HhcCCChhHHHHHHHHHHH
Q 014502           68 NSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIAL----------SGKVQNVPFAMHVFTSMEA  136 (423)
Q Consensus        68 ~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~m~~  136 (423)
                      .|.+..|..+... +..-.++-|...|   .+-   ..-+-......|-..          -+-.|++++|+++|-+|.+
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AF---Vrc---~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr  762 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAF---VRC---GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR  762 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhh---hhh---ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence            5777889888777 6777788887775   221   111222222222221          2234889999999988876


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502          137 QGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQT  216 (423)
Q Consensus       137 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  216 (423)
                      +    |     ..|..+.+.|++-...++++.--....-.--...|+.+...+.....|++|.+.|..-..      .  
T Consensus       763 r----D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~--  825 (1189)
T KOG2041|consen  763 R----D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T--  825 (1189)
T ss_pred             h----h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence            5    2     345667778888777766653211000011135788888888888899999988876432      2  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  296 (423)
                       ...+.++.+..++++-..+-+.+     +.|....-.+.+++.+.|.-++|.+.+-+   .+. |.     +.+..|..
T Consensus       826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~tCv~  890 (1189)
T KOG2041|consen  826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVHTCVE  890 (1189)
T ss_pred             -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHHHHHH
Confidence             23566677766666666555444     33445566677788888888887766533   221 22     24556667


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCchHHHH------------HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          297 LGRVDELEEQLETLTKCNQSPEVLLHF------------FSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~~~~~p~~~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+++.+|.++-+...-    |...+.+            ..--|..+.+.|+.-+|-+++.+|.+
T Consensus       891 LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  891 LNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            7777777666554221    1111100            12235667777877777777777764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=1.7  Score=37.74  Aligned_cols=122  Identities=14%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      .....|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            344555566666666655554322 3334444555666666666666666555432211111111122233333333333


Q ss_pred             HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      ...+-.+.-..  +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33333333321  22444444555556666666666555555444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.34  E-value=0.36  Score=37.05  Aligned_cols=84  Identities=11%  Similarity=-0.040  Sum_probs=59.0

Q ss_pred             CcChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC---CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH
Q 014502           68 NSSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNE---SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA  144 (423)
Q Consensus        68 ~p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  144 (423)
                      .|....|+.-...++.|++.+|.+.    |+.+....+   -...+--.|+.+|.+.+++++|...+++..+........
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~----le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQ----LEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            3445667777777899999999999    455554444   245667788899999999999999999998864332223


Q ss_pred             HHHHHHHHHHc
Q 014502          145 VFNSLICACLC  155 (423)
Q Consensus       145 ~~~~li~~~~~  155 (423)
                      -|...+.+++.
T Consensus        84 dYa~Y~~gL~~   94 (142)
T PF13512_consen   84 DYAYYMRGLSY   94 (142)
T ss_pred             cHHHHHHHHHH
Confidence            45555555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=1.7  Score=37.69  Aligned_cols=180  Identities=13%  Similarity=0.048  Sum_probs=109.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502           78 ITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG  157 (423)
Q Consensus        78 i~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  157 (423)
                      +.++....++..++-|   +++....  +....+ .-.......+++.+|..+|......... +...--.+..+|...|
T Consensus       110 VdgF~G~qPesqlr~~---ld~~~~~--~~e~~~-~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g  182 (304)
T COG3118         110 VDGFQGAQPESQLRQF---LDKVLPA--EEEEAL-AEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAG  182 (304)
T ss_pred             ccccCCCCcHHHHHHH---HHHhcCh--HHHHHH-HHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcC
Confidence            3445666777776665   5554322  222222 2334556788888888888888776322 4566777888888899


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRF  236 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~  236 (423)
                      +++.|..++..+..+ --.........-|..+.+.....+...+-.+.-.   .| |...-..+...+...|+.+.|.+.
T Consensus       183 ~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~  258 (304)
T COG3118         183 DVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEH  258 (304)
T ss_pred             ChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999998887652 1111122222334455555555554455444443   34 666666777888888999988886


Q ss_pred             HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          237 YEEMMSL-GIIPSIPILEKVLEGLCARRKLDRV  268 (423)
Q Consensus       237 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a  268 (423)
                      +-.+... --.-|...=..++..+.-.|.-+.+
T Consensus       259 Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         259 LLALLRRDRGFEDGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             HHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence            6555443 2234555666677777666644433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.21  E-value=0.64  Score=43.76  Aligned_cols=58  Identities=10%  Similarity=0.178  Sum_probs=25.6

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG  244 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  244 (423)
                      +...|..|.....+.|+++-|++.|.+..+         |..|+-.|.-.|+.+...++.+.....|
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            334455555555555555555555444321         3333334444444444444444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.16  E-value=0.64  Score=36.67  Aligned_cols=86  Identities=12%  Similarity=-0.069  Sum_probs=41.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..|++++|..+|+    -+.-.+.-|..-+..|..++-..+++++|...|...-..+. -|+..+-....++...|+.+
T Consensus        48 y~~Gk~~eA~~~F~----~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         48 YNQGRLDEAETFFR----FLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHCCCHHHHHHHHH----HHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence            45555555555533    22222333444445555555555555555555554443332 13333444445555555555


Q ss_pred             HHHHHHHHHHh
Q 014502          161 TALSLFEIMVS  171 (423)
Q Consensus       161 ~A~~~~~~m~~  171 (423)
                      .|...|.....
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            55555555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.14  E-value=0.65  Score=39.76  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIK--PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFI  186 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li  186 (423)
                      .|+.-+..+ +.|++..|.+.|....+....  -....+--|..++...|++++|..+|..+.+..+-.|- ...+--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            344444333 234455555555555543211  01223333445555555555555555555442221111 13333444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 014502          187 SGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      .+..+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            4555555555555555555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.13  E-value=0.08  Score=31.51  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI  364 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~  364 (423)
                      |..+...|...|++++|+++|++..+  ..|+++..+..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence            56677777777777777777777776  3456666665543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.05  E-value=2.8  Score=38.64  Aligned_cols=128  Identities=10%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI  364 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~  364 (423)
                      +|...+..-.+..-++.|..+|-+..+.+ ..++...  +++++..++ .|+...|..+|+--...  -|+++...+..+
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi--~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYI--YCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceee--eHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            34455555566666777888888887777 3444444  777777554 45667777777654432  234444446666


Q ss_pred             HHHhhccccchHHHHHHHHhCCCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          365 CSYFRCAAYDRLDLFLDHIKGSYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      .-+...++.+.++.+++.....+..+  ...|..+|+--..-|+...+..+=+.|.
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            66666666655554444332222333  4567777777777788777766666554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.99  E-value=2.5  Score=40.34  Aligned_cols=163  Identities=12%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPD-----SAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNS  179 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~  179 (423)
                      .+..++...+=.||-+.+++.+.+-.+.+ +.-.     .-.|+.++..++.    ....+.|.++++.+.++   -|+.
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s  266 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS  266 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence            35667777788899999999998866532 2111     1235555554444    45788999999999874   5887


Q ss_pred             HhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          180 KTYDAFI-SGFSSLGNVDAMNKWYAANIAAGF---SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKV  255 (423)
Q Consensus       180 ~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  255 (423)
                      ..|...- +.+...|++++|++.|++......   +.....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~  345 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence            7765443 667788999999999997653211   1122233334455777899999999999998754 3333444433


Q ss_pred             HHH-HHhcCCH-------HHHHHHHHHHH
Q 014502          256 LEG-LCARRKL-------DRVKSFLKFLL  276 (423)
Q Consensus       256 i~~-~~~~g~~-------~~a~~~~~~~~  276 (423)
                      ..+ +...|+.       ++|.+++.+..
T Consensus       346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  346 AAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            333 3456777       77888877764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.97  E-value=0.67  Score=37.62  Aligned_cols=64  Identities=17%  Similarity=0.307  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+..+.+.|.+.|+.+.|.+.+.++.+....+.....++-.+|......+++..+.....+...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5566777777777777777777777776666666665566777777777777777766666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.96  E-value=1.9  Score=38.47  Aligned_cols=230  Identities=11%  Similarity=0.022  Sum_probs=144.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHc
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTS----MEAQG-IKPDSAVFNSLICACLC  155 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g-~~p~~~~~~~li~~~~~  155 (423)
                      +.+.+.++|+..+...+++.... ..--.+|..+..+.++.|.+++++..--.    ..+.. -..--..|-.+.+++-+
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~-~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDL-MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHH-HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888865444443211 12345678888888888888876543211    11110 00112355566666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 014502          156 SGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVNVQTYESLIHGSLKA  227 (423)
Q Consensus       156 ~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~  227 (423)
                      .-++.+++.+-..-....|..|.   -...-++-.++...+.++++++.|+...+.     +......+|-.|-..|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            67777777776655544444442   123445667888888899999999876653     1222456788999999999


Q ss_pred             CCHHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHh----CCCccC-HHhHHHHHHH
Q 014502          228 RDFDSVDRFYEEMMS----LGIIPSIPILEK-----VLEGLCARRKLDRVKSFLKFLLG----GGWKIN-ENMAQKLVKC  293 (423)
Q Consensus       228 g~~~~a~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~----~g~~~~-~~~~~~li~~  293 (423)
                      .|+++|.-+..+..+    -++.--..-|..     +.-++...|....|.+.-++..+    .|-.+. ......+.+.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999877655532    233222223333     33456677888888777777644    343222 2344567888


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 014502          294 YCELGRVDELEEQLETLT  311 (423)
Q Consensus       294 ~~~~g~~~~a~~~~~~~~  311 (423)
                      |...|+.|.|+.-++...
T Consensus       256 yR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHhcccHhHHHHHHHHHH
Confidence            999999999998888754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.86  E-value=0.5  Score=40.44  Aligned_cols=60  Identities=8%  Similarity=-0.029  Sum_probs=24.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          290 LVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      |..++...|++++|..+|..+.+.-.........+--|.....+.|+.++|..+|++..+
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            444444555555554444444432211111111133344444444555555555555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=3.2  Score=37.87  Aligned_cols=252  Identities=10%  Similarity=0.014  Sum_probs=138.4

Q ss_pred             HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCH
Q 014502          117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNV  195 (423)
Q Consensus       117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~  195 (423)
                      .+.+..++..|+..+....+.+.. +..-|..-...+...|++++|+--.++-.+   ++|. .....-.-+++...++.
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~~~  133 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALSDL  133 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhHHH
Confidence            344455566666666666655322 344444455555556666666555544433   1121 11222333333334444


Q ss_pred             HHHHHHHH---------------HHHHCC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          196 DAMNKWYA---------------ANIAAG-FSVNVQTYESLI-HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG  258 (423)
Q Consensus       196 ~~a~~~~~---------------~m~~~~-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  258 (423)
                      .+|.+.++               ...... -+|...+|-.+- .++.-.|++++|.+.--..++.+  + ...+..++++
T Consensus       134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg  210 (486)
T KOG0550|consen  134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRG  210 (486)
T ss_pred             HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcc
Confidence            44443333               111111 124445554443 35566789999888766665432  1 2344445554


Q ss_pred             H--HhcCCHHHHHHHHHHHHhCCCccCHHhHHH-------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCchH---
Q 014502          259 L--CARRKLDRVKSFLKFLLGGGWKINENMAQK-------------LVKCYCELGRVDELEEQLETLTKCNQSPEVL---  320 (423)
Q Consensus       259 ~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---  320 (423)
                      .  --.++.+.+...|++.+..+  |+...--.             =..-..+.|++..|.+.+.+.+.  +.|+..   
T Consensus       211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~n  286 (486)
T KOG0550|consen  211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTN  286 (486)
T ss_pred             cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchh
Confidence            3  34678899999999888754  55432211             12234678999999999999887  334322   


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH-HHH--HHHHhhccccc-hHHHHHHHHh
Q 014502          321 LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV-EMV--ICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       321 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~l--~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      ..+|........+.|+.++|+.--++..+  +.   +... ..+  ..++...++++ +++-+...++
T Consensus       287 aklY~nra~v~~rLgrl~eaisdc~~Al~--iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  287 AKLYGNRALVNIRLGRLREAISDCNEALK--ID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHhHhhhcccCCchhhhhhhhhhhh--cC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12367777788899999999988888766  32   3222 222  34444455663 5555555544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=1  Score=39.74  Aligned_cols=154  Identities=9%  Similarity=-0.049  Sum_probs=102.3

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDSAVFNSLICACLCSG  157 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g  157 (423)
                      ..+|++.+|...    ++++++..+.|.-+++.-=++|.-.|+.+.-...++++.-.   +++-.+..-....-++...|
T Consensus       114 ~~~g~~h~a~~~----wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  114 WGRGKHHEAAIE----WDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             hccccccHHHHH----HHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            456777777777    67777777778888888888888888888888888887654   22222333344445566788


Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 014502          158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS---VNVQTYESLIHGSLKARDFDSVD  234 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  234 (423)
                      -+++|++.-++..+-  .+-|...-.++...+-..|++.++.++..+-...--.   .-.+-|=-..-.+...+.++.|+
T Consensus       190 ~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  190 IYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             cchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            999999888887762  2456677777888888888998888886553321000   00111111223355668899999


Q ss_pred             HHHHHH
Q 014502          235 RFYEEM  240 (423)
Q Consensus       235 ~~~~~m  240 (423)
                      ++|+.=
T Consensus       268 eIyD~e  273 (491)
T KOG2610|consen  268 EIYDRE  273 (491)
T ss_pred             HHHHHH
Confidence            998743

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.62  E-value=1.8  Score=34.43  Aligned_cols=135  Identities=13%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          128 MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA  207 (423)
Q Consensus       128 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  207 (423)
                      .++...+.+.|++|+...+..+|+.+.+.|++..-..    +.+ .++-+|+......+-.+.  +....+.++=-+|.+
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq-~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk   86 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQ-YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK   86 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHh-hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence            4555666677888888888888888888888655444    334 556666665554443332  233445555555554


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          208 AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       208 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .    =...+..+++.+...|++-+|+++.+......    ...-..++.+..+.+|...-..+++-...
T Consensus        87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2    01135566777888888888888776643221    11224456666666666666666655544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.41  E-value=3.4  Score=36.66  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH-
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLK--AR----DFDSVDRFYEEMMSLGI---IPSIPILEKVLEGLCARRKL-  265 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~-  265 (423)
                      ++...+++.|.+.|+..+..+|-+..-....  ..    ...+|..+|+.|++.-.   .++...+..++..  ..+++ 
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            4556677777777777666665543322222  22    23467777888876531   3455566666544  33333 


Q ss_pred             ---HHHHHHHHHHHhCCCccCHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCchHH
Q 014502          266 ---DRVKSFLKFLLGGGWKINEN--MAQKLVKCYCELGR--VDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       266 ---~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                         +.+..+|+.+.+.|+..+..  ..+.++..+.....  ...+.++++.+.+.++++....
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~  219 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH  219 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence               45666777777767655433  22333322222111  3466777777777777666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=0.98  Score=44.69  Aligned_cols=149  Identities=16%  Similarity=0.252  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL----IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL  256 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  256 (423)
                      +...-|..+.+...++-|+.+-+.-   +.  +..+-..+    .+.+.+.|++++|..-|-+-... +.|     ..+|
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi  404 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI  404 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence            3455667777777777777764432   22  23232333    34455678888888777654321 122     2345


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcC
Q 014502          257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSD  335 (423)
Q Consensus       257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g  335 (423)
                      .-|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-. .|... +     ....+..+.+.+
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd-----~e~al~Ilr~sn  477 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD-----VETALEILRKSN  477 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee-----HHHHHHHHHHhC
Confidence            5666677777777888888888765 44445567888888888887776666554 22221 2     334566677777


Q ss_pred             ChhHHHHHHHHH
Q 014502          336 RLDDVEYSVGRM  347 (423)
Q Consensus       336 ~~~~a~~~~~~m  347 (423)
                      -.++|..+-.+.
T Consensus       478 yl~~a~~LA~k~  489 (933)
T KOG2114|consen  478 YLDEAELLATKF  489 (933)
T ss_pred             hHHHHHHHHHHh
Confidence            777777766554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.23  E-value=0.8  Score=39.81  Aligned_cols=78  Identities=19%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 014502          180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIPILEK  254 (423)
Q Consensus       180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~  254 (423)
                      .++..++..+...|+.+.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            35667777777788888888888888777533 777788888888888888888888877754     466666655554


Q ss_pred             HHHH
Q 014502          255 VLEG  258 (423)
Q Consensus       255 li~~  258 (423)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=1.8  Score=42.95  Aligned_cols=77  Identities=17%  Similarity=0.292  Sum_probs=38.4

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD  234 (423)
Q Consensus       155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  234 (423)
                      +.|++++|..-|-+-..  -+.|+.     +|.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.
T Consensus       380 ~Kgdf~~A~~qYI~tI~--~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  380 GKGDFDEATDQYIETIG--FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             hcCCHHHHHHHHHHHcc--cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence            45556655555544432  122221     344444555555555555555555544 4444455556666666555555


Q ss_pred             HHHHH
Q 014502          235 RFYEE  239 (423)
Q Consensus       235 ~~~~~  239 (423)
                      ++.+.
T Consensus       452 efI~~  456 (933)
T KOG2114|consen  452 EFISK  456 (933)
T ss_pred             HHHhc
Confidence            54443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=1.5  Score=39.68  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAA-----GF---------SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL  252 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~-----~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  252 (423)
                      +.|.+.|++..|..-|++....     +.         ..-..+++.+.-+|.+.+++..|++.-+.....+ +++....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            3455666666666665553321     11         1123467778888899999999999888888776 5667777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh-HHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM-AQKLVKCYCELGRVDE-LEEQLETLTK  312 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~-a~~~~~~~~~  312 (423)
                      -.=-.++...|+++.|...|+++++.  .|+... -+.++.+--+.....+ ..++|..|-.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67778888899999999999999884  555444 4444444444333333 3556666643

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.95  E-value=0.78  Score=37.47  Aligned_cols=78  Identities=8%  Similarity=-0.043  Sum_probs=46.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHcc
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---GIKPDSAVFNSLICACLCS  156 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~  156 (423)
                      ..+.+-..|.+.|    -++...+. .|+.....|...|. ..+.+++.+++.+..+.   +-.+|+..+.+|+..+-+.
T Consensus       117 Wsr~~d~~A~~~f----L~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~  191 (203)
T PF11207_consen  117 WSRFGDQEALRRF----LQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL  191 (203)
T ss_pred             hhccCcHHHHHHH----HHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence            4454456666663    34433333 45555555555555 55677777777666543   2255677777777777777


Q ss_pred             CCHHHHH
Q 014502          157 GDVVTAL  163 (423)
Q Consensus       157 g~~~~A~  163 (423)
                      |+++.|.
T Consensus       192 ~~~e~AY  198 (203)
T PF11207_consen  192 KNYEQAY  198 (203)
T ss_pred             cchhhhh
Confidence            7777663

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=2.7  Score=33.46  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             hcCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH-hHHHHHH--HHHhcCC
Q 014502          119 GKVQNVPFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK-TYDAFIS--GFSSLGN  194 (423)
Q Consensus       119 ~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~--~~~~~~~  194 (423)
                      ++.++.++|+.-|..+.+.|..--+. .--.+.......|+...|...|++.-.. .-.|-.. -...|=.  .+...|.
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence            34455566666666666554432111 1111223344556666666666666542 2122111 1111111  2344566


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP  247 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  247 (423)
                      ++....-.+.+-..+-+.-...-..|--+-.+.|++.+|.+.|..+.+....|
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            66666555555544433333334445555556666666666666655543333

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.83  E-value=3  Score=34.95  Aligned_cols=16  Identities=13%  Similarity=0.370  Sum_probs=8.9

Q ss_pred             HhcCCHHHHHHHHHHH
Q 014502          225 LKARDFDSVDRFYEEM  240 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m  240 (423)
                      .-.+.+++|.++|.+.
T Consensus        25 gg~~k~eeAadl~~~A   40 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERA   40 (288)
T ss_pred             CCCcchHHHHHHHHHH
Confidence            3345666666666543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.70  E-value=5.8  Score=36.74  Aligned_cols=137  Identities=7%  Similarity=0.002  Sum_probs=67.5

Q ss_pred             hcCCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH--HH
Q 014502          119 GKVQNVPFAMHVFTSMEAQGIKPD------SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG--FS  190 (423)
Q Consensus       119 ~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~  190 (423)
                      -+.+++.+|..+|.++.+..- .+      ...-+.++++|.. ++.+.....+...++..   | ...|-.|..+  +.
T Consensus        17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y   90 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY   90 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence            355666666666666554311 11      1122344555543 34555555555555422   2 2223333322  23


Q ss_pred             hcCCHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 014502          191 SLGNVDAMNKWYAANIAA--GFSV------------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPSIPIL  252 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~  252 (423)
                      +.+++++|.+.+..-.+.  +-.|            |-..=+..++++.+.|.+.++..++++|...    ....+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            456666666655544433  2111            2222245566677777777777777776543    233666677


Q ss_pred             HHHHHHHHh
Q 014502          253 EKVLEGLCA  261 (423)
Q Consensus       253 ~~li~~~~~  261 (423)
                      +.++-.+++
T Consensus       171 d~~vlmlsr  179 (549)
T PF07079_consen  171 DRAVLMLSR  179 (549)
T ss_pred             HHHHHHHhH
Confidence            765555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.68  E-value=0.0017  Score=50.81  Aligned_cols=48  Identities=10%  Similarity=0.106  Sum_probs=18.7

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL  272 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  272 (423)
                      .+.+.++....+++.+...+...+....+.++..|++.++.+...+++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            333444444444444443332333344444444444444334433333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.64  E-value=3.6  Score=34.19  Aligned_cols=202  Identities=16%  Similarity=0.093  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH  222 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  222 (423)
                      ...+......+...+.+..+...+...............+......+...++...+.+.+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            3444555555555555555555555544200112333344444455555555555555555555433222 111111222


Q ss_pred             -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC
Q 014502          223 -GSLKARDFDSVDRFYEEMMSLGI--IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR  299 (423)
Q Consensus       223 -~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  299 (423)
                       .+...|+++.|...+.+......  ......+......+...++.+.+...+..............+..+...+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             45566666666666666533111  012223333333345566666666666666654211134555556666666666


Q ss_pred             HHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          300 VDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       300 ~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ++.|...+.......  |+ ...  +..+...+...+..+++...+.+...
T Consensus       218 ~~~a~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALELD--PDNAEA--LYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhhC--cccHHH--HhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777666666532  32 111  22333333355566666666666655

>PRK11906 transcriptional regulator; Provisional

Probab=93.54  E-value=6.4  Score=36.75  Aligned_cols=166  Identities=7%  Similarity=0.079  Sum_probs=104.5

Q ss_pred             HHH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 014502          215 QTY--ESLIHGSLKA-----RDFDSVDRFYEEMMS-LGIIPSI-PILEKVLEGLCA---------RRKLDRVKSFLKFLL  276 (423)
Q Consensus       215 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~-~~~~p~~-~~~~~li~~~~~---------~g~~~~a~~~~~~~~  276 (423)
                      ..|  ...+.+....     -..+.|+.+|.+... +.+.|+- ..|..+..++..         ..+..+|.++.+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5566655542     234567888888873 2345653 334444333221         234556777777777


Q ss_pred             hCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 014502          277 GGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKS  356 (423)
Q Consensus       277 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  356 (423)
                      +.+ +.|......+..++...++++.|...|+....  ..|+.... |....-...-+|+.++|.+.+++..+.......
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~-~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASL-YYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            765 45777777777777888889999999999888  44765543 444555567789999999999986653211111


Q ss_pred             hHhHHHHHHHHhhccccchHHHHHHHHh
Q 014502          357 AEDVEMVICSYFRCAAYDRLDLFLDHIK  384 (423)
Q Consensus       357 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  384 (423)
                      .......+..|+..+-.++..++.+..+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (458)
T PRK11906        408 AVVIKECVDMYVPNPLKNNIKLYYKETE  435 (458)
T ss_pred             HHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence            2222334557888887788877766543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.35  E-value=8.7  Score=37.69  Aligned_cols=185  Identities=12%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 014502          159 VVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNVDAMNKWYAANIA-------AGFSVNVQTYESLIHGSLKAR--  228 (423)
Q Consensus       159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g--  228 (423)
                      ...|.++++...+...+.+-...=.....+ +....+.+.|+.+|+...+       .|   ......-+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            456777777776621111111111112223 4456778888888887766       44   2334455556665532  


Q ss_pred             ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH--hcCCHHH
Q 014502          229 ---DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC--ELGRVDE  302 (423)
Q Consensus       229 ---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~  302 (423)
                         +.+.|..+|.+.-+.| .|+....-..+.-... ..+...|.++|...-+.|.. +...+.+++....  ...+.+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~  382 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL  382 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence               5677888888877777 4665555444443333 35677888888888887743 2222222221111  2345777


Q ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          303 LEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       303 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                      |..++.+..+.|.......   ...+..+.. ++++.+.-.+..+.+.|.
T Consensus       383 A~~~~k~aA~~g~~~A~~~---~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  383 AFAYYKKAAEKGNPSAAYL---LGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHHccChhhHHH---HHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            8888888877773222222   122333333 666666666555555444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.34  E-value=5.8  Score=35.62  Aligned_cols=227  Identities=11%  Similarity=0.064  Sum_probs=122.4

Q ss_pred             ccCCHHHHHHHHHHHHhcC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHC-CCC---CCHHHHHHHHHHHHhcC
Q 014502          155 CSGDVVTALSLFEIMVSSE-EYKPNSKTYDAFISGFSSLGNVDAMNKWYAA-NIAA-GFS---VNVQTYESLIHGSLKAR  228 (423)
Q Consensus       155 ~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~-~~~---~~~~~~~~li~~~~~~g  228 (423)
                      ...+.++|+..+.+-..+. ...---.+|..+..+.++.|.+++++..--. |.-. ...   .-...|-.+-.++-+.-
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566665555444310 0111223566666677777776665543211 1100 001   11234555556666666


Q ss_pred             CHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----cCHHhHHHHHHHHHhcCC
Q 014502          229 DFDSVDRFYEEMMS-LGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-----INENMAQKLVKCYCELGR  299 (423)
Q Consensus       229 ~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~~g~  299 (423)
                      ++.+++.+-..-.. .|..|   ......++-.++...+.++++++.|+...+....     ....++..|-..|.+..+
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            66666665544332 13223   1233444666777778888888888877653211     234578888889999999


Q ss_pred             HHHHHHHHHHHHh--CCCCCchHHHHHH-----HHHHHHHhcCChhHHHHHHHHHH----hCCCCCCChHhHHHHHHHHh
Q 014502          300 VDELEEQLETLTK--CNQSPEVLLHFFS-----GIIRLYALSDRLDDVEYSVGRMG----KQGLSFKSAEDVEMVICSYF  368 (423)
Q Consensus       300 ~~~a~~~~~~~~~--~~~~p~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~~~~~l~~~~~  368 (423)
                      +++|.-+..+..+  +....+.+..-|.     .|.-++...|++.+|.+.-++..    +.|-.+........+...|.
T Consensus       178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR  257 (518)
T KOG1941|consen  178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR  257 (518)
T ss_pred             hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            9988766665443  1111122111132     34456677787777777666544    34443333445566778888


Q ss_pred             hccccch-HHHHHH
Q 014502          369 RCAAYDR-LDLFLD  381 (423)
Q Consensus       369 ~~~~~~~-~~~~~~  381 (423)
                      ..|+.|+ ..-|.+
T Consensus       258 ~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  258 SRGDLERAFRRYEQ  271 (518)
T ss_pred             hcccHhHHHHHHHH
Confidence            8888864 444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.25  E-value=1.3  Score=38.63  Aligned_cols=78  Identities=12%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 014502          144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA-----AGFSVNVQTYE  218 (423)
Q Consensus       144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~  218 (423)
                      .++..++..+...|+++.+.+.++++...  -+-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+..
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            35556666666667777777777666652  244566677777777777777777766666554     46677666666


Q ss_pred             HHHHH
Q 014502          219 SLIHG  223 (423)
Q Consensus       219 ~li~~  223 (423)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55555

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.15  E-value=1.9  Score=40.30  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502           72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLIC  151 (423)
Q Consensus        72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  151 (423)
                      .....+-.+.+..++..-++.-+    +.++..+.-...|..|.  --....+.+|+++|++..+.|-    ..+.    
T Consensus       170 ~Aq~IMq~AWRERnp~aRIkaA~----eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg----  235 (539)
T PF04184_consen  170 PAQEIMQKAWRERNPQARIKAAK----EALEINPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLG----  235 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHH----HHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhc----
Confidence            44566666788888877777742    32222222223333322  2235567889998888776431    1110    


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLKARDF  230 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~  230 (423)
                         +....+..-..++.... ....|-..+=..+-.++-+.|+.++|++.+.+|.+.... -+......|+.++...+.+
T Consensus       236 ---~s~~~~~~g~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  236 ---KSQFLQHHGHFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             ---hhhhhhcccchhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence               00000000011111111 111222222233555555667777777777666654221 1233555666667777777


Q ss_pred             HHHHHHHHHHH
Q 014502          231 DSVDRFYEEMM  241 (423)
Q Consensus       231 ~~a~~~~~~m~  241 (423)
                      .++..++.+-.
T Consensus       312 ad~q~lL~kYd  322 (539)
T PF04184_consen  312 ADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHHhc
Confidence            77766666653

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.14  E-value=3.2  Score=32.02  Aligned_cols=51  Identities=14%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCCc---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          261 ARRKLDRVKSFLKFLLGGGWK---INENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +.|++++|.+.|+.+... .+   -...+.-.++.+|.+.+++++|...++..++
T Consensus        22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            445555555555555443 11   1122333445555555555555555555544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.12  E-value=2.9  Score=31.54  Aligned_cols=93  Identities=14%  Similarity=0.060  Sum_probs=52.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHhcCC
Q 014502          258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC-NQSPEVLLHFFSGIIRLYALSDR  336 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~g~  336 (423)
                      +....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+=+++..+. |.........|..--..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            345566777777777666654 2335566666666666677777776666665552 21111111123333334556667


Q ss_pred             hhHHHHHHHHHHhCC
Q 014502          337 LDDVEYSVGRMGKQG  351 (423)
Q Consensus       337 ~~~a~~~~~~m~~~~  351 (423)
                      .+.|..-|+...+-|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777777676666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.02  E-value=0.38  Score=28.50  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=13.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHC
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQ  137 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~  137 (423)
                      +..+...|.+.|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344444455555555555555555443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.01  E-value=5  Score=34.95  Aligned_cols=148  Identities=10%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS-LG-NVDAMNKWYAANIAA-GFSVNVQTYESLIH  222 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~  222 (423)
                      |..++.   ++..+.+|+++|+....+..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...+|.
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            555553   3455678888888443212356677777777777665 22 223333444444433 44667777888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCccCHHhHHHHHHHHHh
Q 014502          223 GSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGLCARRKLDRVKSFLKF-----LLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~g~~~~~~~~~~li~~~~~  296 (423)
                      .+++.+++.+-.++++..... +..-|...|..+|+.....|+..-..++.++     +.+.++..+...-..+-+.+.+
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            899999999888888877654 5566778888888888889988877777765     3455677777666665555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.94  E-value=2.4  Score=34.43  Aligned_cols=63  Identities=13%  Similarity=0.100  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ..+..+.+.|++.|+.+.|++.|.++.+....+..  ..+-.+|......+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44556666777777777777777776665433332  3455666666666777776666665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=0.84  Score=39.80  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=75.6

Q ss_pred             HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502          136 AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE--YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN  213 (423)
Q Consensus       136 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  213 (423)
                      ..|.+.+..+...++..-....+++.++..+-+++.+.+  ..|+. +-.+.++.+.+ -+.++++.++..=...|+-||
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence            345566667777777777777888999888888876311  11222 22334444433 456688888888888899999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLG  244 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  244 (423)
                      ..+++.+|+.+.+.+++.+|.++.-.|..+.
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999998888877776543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.70  E-value=4.3  Score=32.39  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=68.1

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          200 KWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG  279 (423)
Q Consensus       200 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  279 (423)
                      +++..+.+.++.|+...|..+++.+.+.|++....+    +...++-+|.......+-.+..  ....+.++--.|.+. 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence            455555566677777777777777777776554433    3445556665555544433322  223333333333332 


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..   ..+..+++.+...|++-+|.++.+.....+..|      ...++++-.+.++...-..+|+-..+
T Consensus        88 L~---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~------~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 LG---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP------ARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             hh---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            00   124445566666777777777666543322112      23345555555555444444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.37  E-value=7.4  Score=34.31  Aligned_cols=24  Identities=4%  Similarity=-0.108  Sum_probs=12.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      -+..+.+.++.+++.+++.+|...
T Consensus       127 ~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  127 KLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHhccCChhHHHHHHHHHHHh
Confidence            344444455555555555555544

It is also involved in sporulation [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.20  E-value=0.39  Score=27.02  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=13.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 014502          217 YESLIHGSLKARDFDSVDRFYEE  239 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~  239 (423)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555666666666666666655

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.18  E-value=7.4  Score=33.93  Aligned_cols=137  Identities=12%  Similarity=0.117  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIA-AGFSVNVQTYESLIHGSLK-ARD-FDSVDRFYEEMMS-LGIIPSIPILEKVLE  257 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~~-~~~~p~~~~~~~li~  257 (423)
                      |..|+.   ....+.+|+++|+..-- ..+--|..+...+++.... .+. ...-.++.+-+.. .|-.++..+...++.
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            554443   23345667777773222 2344577777788877776 222 2222334444433 245788899999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCchHH
Q 014502          258 GLCARRKLDRVKSFLKFLLGG-GWKINENMAQKLVKCYCELGRVDELEEQLET-----LTKCNQSPEVLL  321 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~~~  321 (423)
                      .++..+++....++++..... +..-|...|..+|+...+.|+..-...+.++     +++.++..+...
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L  280 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDEL  280 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHH
Confidence            999999999999999988776 5667888999999999999999888777765     445555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.13  E-value=7.9  Score=34.12  Aligned_cols=62  Identities=11%  Similarity=-0.018  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          216 TYESLIHGSLKARDFD---SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      +...++.+|...+..+   +|.++++.+.+.. .-....+..-+..+.+.++.+.+.+++.+|...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            3444455555554433   3334444443321 111233334444444456666666666666554

It is also involved in sporulation [].

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.12  E-value=2.6  Score=36.91  Aligned_cols=100  Identities=10%  Similarity=0.007  Sum_probs=75.7

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQG---IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD  183 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  183 (423)
                      ...+...++..-....+++.+...+-.++...   ..|+.. -.++++.+. .-+.++++.++..=.+ .|+.||-.+++
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c  139 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFC  139 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHH
Confidence            45556677777777889999999988887641   122211 122333333 4567799999998888 99999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAG  209 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~  209 (423)
                      .+|+.+.+.+++.+|.++.-.|....
T Consensus       140 ~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  140 LLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999999998887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.11  E-value=0.38  Score=27.03  Aligned_cols=26  Identities=19%  Similarity=0.072  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          393 TYDFLVAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47889999999999999999999843

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.02  E-value=4.2  Score=30.71  Aligned_cols=91  Identities=16%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             HHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH---hHHHHHHHHHhcC
Q 014502          117 LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSK---TYDAFISGFSSLG  193 (423)
Q Consensus       117 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~  193 (423)
                      +++..|+++.|++.|.+....- +-....||.-..++--.|+.++|++=+++..+..|-+ +..   .|..-...|-..|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence            5567788888888887776642 3366778888888888888888887777776633322 222   2322334455667


Q ss_pred             CHHHHHHHHHHHHHCC
Q 014502          194 NVDAMNKWYAANIAAG  209 (423)
Q Consensus       194 ~~~~a~~~~~~m~~~~  209 (423)
                      +.+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777777666555

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.97  E-value=5.1  Score=31.58  Aligned_cols=52  Identities=21%  Similarity=0.116  Sum_probs=24.8

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      +.++.+++..++..+.-  ..|..... -..-.-.+...|+|.+|..+|+++.+.
T Consensus        22 ~~~~~~D~e~lL~ALrv--LRP~~~e~-~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRV--LRPEFPEL-DLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             ccCChHHHHHHHHHHHH--hCCCchHH-HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            34555666666665554  22332221 111122245566666666666665543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.49  E-value=7.3  Score=32.39  Aligned_cols=28  Identities=11%  Similarity=-0.007  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          322 HFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+|--+.+.|...|+.++|..+|+-...
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3466677777777777777777777665

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.48  E-value=8.4  Score=33.11  Aligned_cols=207  Identities=14%  Similarity=0.120  Sum_probs=125.7

Q ss_pred             hhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC---
Q 014502           63 DIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ---  137 (423)
Q Consensus        63 ~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---  137 (423)
                      ...+-.||+-.=|..-.+  ++...+++|+..|..+++.=-+.+.---.+...++..+.+.+++++....+.+|..-   
T Consensus        18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS   97 (440)
T KOG1464|consen   18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS   97 (440)
T ss_pred             cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            344667887776666666  677889999999765444322222234566788899999999999999888887632   


Q ss_pred             CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 014502          138 GI--KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGF-  210 (423)
Q Consensus       138 g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-  210 (423)
                      .+  .-+....|++++....+.+.+.-..+|+.-.+.-.-..+.    .|-+-|...|...+.+....++++++...-- 
T Consensus        98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~  177 (440)
T KOG1464|consen   98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT  177 (440)
T ss_pred             HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence            11  1244567788877666666655555544322100000111    1334566777788888888888887764311 


Q ss_pred             ---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHH
Q 014502          211 ---SV-------NVQTYESLIHGSLKARDFDSVDRFYEEMMSL-GIIPSIPILEKVLEGL-----CARRKLDRVKS  270 (423)
Q Consensus       211 ---~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~~~a~~  270 (423)
                         .-       =...|..=|..|....+-.+...+|++.... .-.|.+.... +|.-|     .+.|++++|..
T Consensus       178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT  252 (440)
T KOG1464|consen  178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT  252 (440)
T ss_pred             ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence               11       1345777777888877777777788766432 2235444443 33333     35677777644

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.41  E-value=2  Score=30.35  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL  276 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  276 (423)
                      .++.+-++.+...++.|++....+.+++|.+.+++..|.++++-..
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3444445555555555555555555666655666666665555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.02  E-value=18  Score=36.16  Aligned_cols=118  Identities=8%  Similarity=0.002  Sum_probs=55.9

Q ss_pred             cCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch
Q 014502          297 LGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR  375 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~-~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~  375 (423)
                      ..+.+.|...+..... ....+.....++..+.......+...++...++.......   +......-+..-...++++.
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~---~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ---STSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC---CcHHHHHHHHHHHHccCHHH
Confidence            3445667777776533 2233333333344444333333324455555554332211   23334444444446666654


Q ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          376 LDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       376 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      +..+...+.....-...-..-+..++...|+.++|..+|++.
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333333222211222333445666666677777777777765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.98  E-value=0.31  Score=27.06  Aligned_cols=31  Identities=19%  Similarity=0.139  Sum_probs=21.1

Q ss_pred             HHHhhCCCCCHhHHHHHHHHHhcCCChhHHH
Q 014502           98 DKMLKGNESCLDEYACLIALSGKVQNVPFAM  128 (423)
Q Consensus        98 ~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (423)
                      ++..+..+.|..+|+.+...|...|++++|+
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3344445567777777777777777777765

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.59  E-value=1.6  Score=30.78  Aligned_cols=59  Identities=14%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          126 FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       126 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      ++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+-.+.+  +..+...|..++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l   83 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence            45555666666666677777777777777777777777777766531  222334555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.41  E-value=7.5  Score=30.67  Aligned_cols=50  Identities=14%  Similarity=0.073  Sum_probs=22.3

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAV-FNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +.++.+.+..+++-+...  .|.... -..-...+...|++.+|.++|+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            444555555555555443  222211 11112233455555555555555544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.27  E-value=18  Score=37.22  Aligned_cols=20  Identities=5%  Similarity=-0.162  Sum_probs=14.0

Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 014502          330 LYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       330 ~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+.+.|+.++|+.++-....
T Consensus       693 ll~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  693 LLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HHhhhhhHHHHHHHHHHHhc
Confidence            34478888888888766553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.80  E-value=2  Score=30.69  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=17.1

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          235 RFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL  276 (423)
Q Consensus       235 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  276 (423)
                      +-++.+...++.|++....+.+.+|.+.+++..|.++++-+.
T Consensus        31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333344444444444444444444444444444444443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.14  E-value=26  Score=35.00  Aligned_cols=66  Identities=6%  Similarity=0.021  Sum_probs=41.9

Q ss_pred             cChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-------hhHHHHHHHHHHHCC
Q 014502           69 SSQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-------VPFAMHVFTSMEAQG  138 (423)
Q Consensus        69 p~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~g  138 (423)
                      .+.-.|-.+--.++.|..++|.++    ..............+...+..|....+       -++...-|++.....
T Consensus       110 ~~~p~Wa~Iyy~LR~G~~~~A~~~----~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~  182 (613)
T PF04097_consen  110 NGDPIWALIYYCLRCGDYDEALEV----ANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS  182 (613)
T ss_dssp             TTEEHHHHHHHHHTTT-HHHHHHH----HHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred             CCCccHHHHHHHHhcCCHHHHHHH----HHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            345567777667899999999999    544444555666778888888876533       234555566555443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.94  E-value=18  Score=32.95  Aligned_cols=49  Identities=12%  Similarity=0.065  Sum_probs=28.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEA  136 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  136 (423)
                      .+.|+++...+.    .... ....++...|..+...  +.++++++....+....
T Consensus         9 Wrl~~Wd~l~~~----~~~~-~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    9 WRLGDWDLLEEY----LSQS-NEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HhcCChhhHHHH----Hhhc-cCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            577777774444    2222 2222455555555554  77788887777777654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.81  E-value=9.5  Score=29.63  Aligned_cols=51  Identities=14%  Similarity=0.181  Sum_probs=25.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCchHHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          297 LGRVDELEEQLETLTKCNQSPEVLLH-FFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~~~~~p~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                      .++.+++..+++.|.-  ..|+.... ++..  -.+...|+|++|.++|++..+.+
T Consensus        23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRV--LRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHH--hCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence            5556666666665554  22322210 0222  22455666666666666665544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.58  E-value=13  Score=30.76  Aligned_cols=223  Identities=13%  Similarity=0.054  Sum_probs=139.2

Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          156 SGDVVTALSLFEIMVSSEEYK-PNSKTYDAFISGFSSLGNVDAMNKWYAANIAA-GFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       156 ~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                      .+....+...+..... .... .....+......+...+.+..+...+...... ........+......+...+++..+
T Consensus        36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (291)
T COG0457          36 LGELAEALELLEEALE-LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA  114 (291)
T ss_pred             HhhHHHHHHHHHHHHh-cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence            4666677777776665 2111 13567777788888888888888888877652 2244566677777777888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--ccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          234 DRFYEEMMSLGIIPSIPILEKVLE-GLCARRKLDRVKSFLKFLLGGGW--KINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       234 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      .+.+.........+. ........ .+...|+++.+...+.+......  ......+......+...++.+.+...+...
T Consensus       115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         115 LELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            888888776543331 22222222 67788888888888888855221  123334444445566778888888888888


Q ss_pred             HhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       311 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      ...........  +..+...+...++.+++...+.......  |.....+..+...+...+..+ +...+.....
T Consensus       194 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         194 LKLNPDDDAEA--LLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HhhCcccchHH--HHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77432211233  6677777888888888888888877633  222344444444444444443 3444444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=88.04  E-value=16  Score=31.29  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          155 CSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       155 ~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      +.|++++|.+.|+.+..+....| ...+--.++-++.+.+++++|+...++....
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            44555555555555544221111 1223333444455555555555555555443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.00  E-value=0.76  Score=25.44  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=10.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHH
Q 014502          213 NVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a  233 (423)
                      +...|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            444455555555555555444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.53  E-value=8.6  Score=27.61  Aligned_cols=60  Identities=10%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR  329 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~  329 (423)
                      +..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+.-.. ...  |..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~-~~~--Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK-KEI--YPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTH--HHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh-HHH--HHHHHH
Confidence            566777777888889999999999999999999999999999987653322 223  666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.11  E-value=20  Score=31.37  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      ++.....|...|.+.+|.++.+..+... +.+...+-.|+..++..|+--.|..-++.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            4445566667777777777777766653 445666666777777777755555555544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.96  E-value=2  Score=23.42  Aligned_cols=28  Identities=14%  Similarity=-0.033  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+|..+..++...|++++|+..|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            5788999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=86.94  E-value=13  Score=28.92  Aligned_cols=96  Identities=9%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             HHhhhccCCcChh--hHHHHHHH-HhcCCHHHHHHHHHHHHHHHhh---CCCCCHhHHHHHHHHHhcCCC-hhHHHHHHH
Q 014502           60 DSVDIFAFNSSQF--SWDALITS-LQSSSPKKAQLVLEWRLDKMLK---GNESCLDEYACLIALSGKVQN-VPFAMHVFT  132 (423)
Q Consensus        60 ~~m~~~g~~p~~~--~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~---~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~  132 (423)
                      +.|.+.+..++..  ..|.++.- ...+++...+.+++.+ .....   .+..|..+|+.++.+.++... --.+..+|+
T Consensus        26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l-~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~  104 (145)
T PF13762_consen   26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL-HFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN  104 (145)
T ss_pred             HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence            3334444444432  23555555 4445555555553221 00000   011345556666666655444 334555666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHcc
Q 014502          133 SMEAQGIKPDSAVFNSLICACLCS  156 (423)
Q Consensus       133 ~m~~~g~~p~~~~~~~li~~~~~~  156 (423)
                      .|++.+.++++.-|..+|.++.+.
T Consensus       105 ~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen  105 FLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHcC
Confidence            666655566666666666655544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.79  E-value=0.37  Score=37.54  Aligned_cols=84  Identities=7%  Similarity=0.037  Sum_probs=52.7

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC
Q 014502          114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG  193 (423)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~  193 (423)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++..   ..     .-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhcc
Confidence            45666677777777777777776655556777778888888777666666666521   11     22334566666667


Q ss_pred             CHHHHHHHHHHH
Q 014502          194 NVDAMNKWYAAN  205 (423)
Q Consensus       194 ~~~~a~~~~~~m  205 (423)
                      .++++.-++.++
T Consensus        85 l~~~a~~Ly~~~   96 (143)
T PF00637_consen   85 LYEEAVYLYSKL   96 (143)
T ss_dssp             SHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHc
Confidence            666666665554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.54  E-value=1.9  Score=24.72  Aligned_cols=29  Identities=17%  Similarity=0.192  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          391 RATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       391 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ..+++.+...|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35788899999999999999999988653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.46  E-value=8  Score=27.45  Aligned_cols=61  Identities=16%  Similarity=0.113  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCC-----HhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 014502           76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNESC-----LDEYACLIALSGKVQNVPFAMHVFTSMEA  136 (423)
Q Consensus        76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  136 (423)
                      ..+.+++.+++..|.+.+.+.|+.....+.+.     ....-.+.......|++++|.+.+++..+
T Consensus         4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~   69 (94)
T PF12862_consen    4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR   69 (94)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34455788888888888777777666555543     22233344555667777777777776653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.24  E-value=16  Score=29.33  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=78.9

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIP-ILEKV  255 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l  255 (423)
                      +...|..-++ +.+.+..++|+.-|.++.+.|..--.. .--.........|+...|...|++.-...-.|-.. -...+
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4445555443 345566677777777777665431111 11112233456677777777777776554344332 22222


Q ss_pred             HHH--HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          256 LEG--LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       256 i~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      =.+  +...|.++.+....+.+-..|-+.-...-.+|.-+-.+.|++.+|...|+.+......|...
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni  203 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI  203 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence            222  34567777777766666655544344444556666667777777777777776654445433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.14  E-value=2.1  Score=23.34  Aligned_cols=21  Identities=29%  Similarity=0.388  Sum_probs=7.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 014502          290 LVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~  310 (423)
                      +..+|...|++++|...|++.
T Consensus         7 ~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    7 LGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHH
Confidence            333333334444444333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.09  E-value=13  Score=35.99  Aligned_cols=133  Identities=9%  Similarity=-0.005  Sum_probs=75.3

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      ...-+.+.+.+.+.|-.++|+++-         +|+..   -.....+.|+++.|.++..+..       +..-|..|..
T Consensus       614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~  674 (794)
T KOG0276|consen  614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGD  674 (794)
T ss_pred             hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHH
Confidence            344566666666666666665442         12211   1122345677777776665542       3445777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      +..+.+++..|.+.|.....         |..|+-.+...|+-+....+-...++.| +-+...     .+|...|++++
T Consensus       675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~AF-----~~~~l~g~~~~  739 (794)
T KOG0276|consen  675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLAF-----LAYFLSGDYEE  739 (794)
T ss_pred             HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchHH-----HHHHHcCCHHH
Confidence            77777777777777766542         3455555666666665555555555555 333222     23445677777


Q ss_pred             HHHHHHH
Q 014502          268 VKSFLKF  274 (423)
Q Consensus       268 a~~~~~~  274 (423)
                      +.+++.+
T Consensus       740 C~~lLi~  746 (794)
T KOG0276|consen  740 CLELLIS  746 (794)
T ss_pred             HHHHHHh
Confidence            6666544

>PRK09687 putative lyase; Provisional

Probab=85.95  E-value=24  Score=31.15  Aligned_cols=18  Identities=6%  Similarity=-0.258  Sum_probs=8.4

Q ss_pred             CCHhHHHHHHHHHhcCCC
Q 014502          106 SCLDEYACLIALSGKVQN  123 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~  123 (423)
                      +|..+....+..+...|.
T Consensus        35 ~d~~vR~~A~~aL~~~~~   52 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGG   52 (280)
T ss_pred             CCHHHHHHHHHHHHhcCc
Confidence            344444444445544443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.94  E-value=30  Score=33.61  Aligned_cols=131  Identities=13%  Similarity=0.004  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      .-+.+...+.+.|..++|+++         .+|...   -.....+.|+++.|.++..+.      -+..-|..|-++..
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al  677 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL  677 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence            344555666666666666554         222221   112334667777777765443      34566778888888


Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV  340 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a  340 (423)
                      ..+++..|.+.+.+..+         |..|+-.+...|+-+....+-....+.|.        .|....+|...|+++++
T Consensus       678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------~N~AF~~~~l~g~~~~C  740 (794)
T KOG0276|consen  678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--------NNLAFLAYFLSGDYEEC  740 (794)
T ss_pred             hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--------cchHHHHHHHcCCHHHH
Confidence            88888888887776554         33455566667776655555555555543        33444457777888888


Q ss_pred             HHHHHH
Q 014502          341 EYSVGR  346 (423)
Q Consensus       341 ~~~~~~  346 (423)
                      .+++.+
T Consensus       741 ~~lLi~  746 (794)
T KOG0276|consen  741 LELLIS  746 (794)
T ss_pred             HHHHHh
Confidence            777655

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.74  E-value=3.1  Score=28.16  Aligned_cols=48  Identities=4%  Similarity=-0.063  Sum_probs=26.2

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502          296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS  343 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~  343 (423)
                      ...+.++|...+....+....|.....+...++.+|+..|+++++++.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666665554444443333455666666666666555544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.67  E-value=11  Score=31.02  Aligned_cols=78  Identities=10%  Similarity=0.023  Sum_probs=42.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL---GIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .+.|+ ++|.+.|-++...+.--++.....|.. |.-..+.+++.+++....+.   +-.+|+..+.+|.+.+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33344 556666666665554434443333333 33356666666666655442   22456666666666666666666


Q ss_pred             HHH
Q 014502          267 RVK  269 (423)
Q Consensus       267 ~a~  269 (423)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.57  E-value=2.4  Score=24.27  Aligned_cols=27  Identities=11%  Similarity=0.215  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555555555666666665555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.48  E-value=2.6  Score=22.80  Aligned_cols=28  Identities=11%  Similarity=0.084  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ..|..+..++.+.|++++|.+.+++...
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4677889999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.00  E-value=36  Score=32.39  Aligned_cols=95  Identities=12%  Similarity=0.091  Sum_probs=53.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK  292 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~  292 (423)
                      |....-+++..+..+..+.-...+..+|..-|  .+-..|..++..|... ..++...+|+++.+..+. |...-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            45555566666666666666666666666644  3445566666666655 455566666666665432 3333333333


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 014502          293 CYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       293 ~~~~~g~~~~a~~~~~~~~~  312 (423)
                      .|-+ ++.+.+...|.++..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHH
Confidence            3333 555555555555544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.32  E-value=26  Score=30.24  Aligned_cols=209  Identities=17%  Similarity=0.177  Sum_probs=134.8

Q ss_pred             CCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 014502          137 QGIKPDSAVFNSLICAC-LCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSSLGNVDAMNKWYAANIAA---GF  210 (423)
Q Consensus       137 ~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~  210 (423)
                      .+-.||+..=|..-.+- .+..++++|+.-|++..+..|-+.+  -.....+|....+.+++++..+.|.+|...   .+
T Consensus        20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV   99 (440)
T KOG1464|consen   20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV   99 (440)
T ss_pred             cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            34566766544433222 2445899999999999874443332  234567789999999999999999988742   11


Q ss_pred             --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-
Q 014502          211 --SVNVQTYESLIHGSLKARDFDSVDRFYEEMMS----L-GIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI-  282 (423)
Q Consensus       211 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-  282 (423)
                        .-+..+.|++++.-....+.+...++|+.-.+    . +-..-..|-+-+...|...+++....++++++..+.-.. 
T Consensus       100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed  179 (440)
T KOG1464|consen  100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED  179 (440)
T ss_pred             hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence              23566778888877777777777776654322    1 112223455567778888899999999999987653222 


Q ss_pred             ---CH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHH-----HhcCChhHHH-HHHH
Q 014502          283 ---NE-------NMAQKLVKCYCELGRVDELEEQLETLTK-CNQSPEVLLHFFSGIIRLY-----ALSDRLDDVE-YSVG  345 (423)
Q Consensus       283 ---~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~~~li~~~-----~~~g~~~~a~-~~~~  345 (423)
                         |.       .+|..-|.+|....+-.....++++... +...|.+..   ...|.-|     .+.|++++|. ++|+
T Consensus       180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI---mGvIRECGGKMHlreg~fe~AhTDFFE  256 (440)
T KOG1464|consen  180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI---MGVIRECGGKMHLREGEFEKAHTDFFE  256 (440)
T ss_pred             CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH---HhHHHHcCCccccccchHHHHHhHHHH
Confidence               22       3566677788888887888888887654 334455543   3445444     3567777775 3444


Q ss_pred             HHH
Q 014502          346 RMG  348 (423)
Q Consensus       346 ~m~  348 (423)
                      ..+
T Consensus       257 AFK  259 (440)
T KOG1464|consen  257 AFK  259 (440)
T ss_pred             HHh
Confidence            443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.63  E-value=3.1  Score=22.46  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=8.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 014502          290 LVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       290 li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      +...+...|++++|.+.+++..
T Consensus         7 lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    7 LGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH
Confidence            3333444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=83.02  E-value=19  Score=31.26  Aligned_cols=20  Identities=10%  Similarity=-0.109  Sum_probs=8.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m  240 (423)
                      |-.|.|.|++..+.++-...
T Consensus       125 ILLysKv~Ep~amlev~~~W  144 (309)
T PF07163_consen  125 ILLYSKVQEPAAMLEVASAW  144 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            33344444444444444433

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.92  E-value=2  Score=21.94  Aligned_cols=24  Identities=8%  Similarity=0.063  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHH
Q 014502          393 TYDFLVAGYRRAGLSGKLDSVINE  416 (423)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~  416 (423)
                      ....+..++...|++++|..++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            455778899999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=82.72  E-value=60  Score=33.19  Aligned_cols=201  Identities=9%  Similarity=0.050  Sum_probs=109.3

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCH-------HhHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNS-------KTYDAFI-SGFSSLGNVDAMNKWYAANIAA----GFSVNVQTYE  218 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~  218 (423)
                      .......++++|..+..+..... -.|+.       ..++.|- ......|++++|..+-+.....    -..+....+.
T Consensus       423 W~~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s  501 (894)
T COG2909         423 WLLASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS  501 (894)
T ss_pred             HHHHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence            34456789999999998887622 22221       2344443 2334568888888887766543    2233556667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HHHhcCCH--HHHHHHHHHHHhC-----CC-ccCHH
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI---LEKVLE--GLCARRKL--DRVKSFLKFLLGG-----GW-KINEN  285 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~--~~~~~g~~--~~a~~~~~~~~~~-----g~-~~~~~  285 (423)
                      .+..+..-.|++++|..+..+..+..-.-+...   |..+..  .+...|+.  .+....+......     .. .+-..
T Consensus       502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~  581 (894)
T COG2909         502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR  581 (894)
T ss_pred             hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence            777788888999999988876654322233333   333322  23445632  2222333322221     10 11223


Q ss_pred             hHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          286 MAQKLVKCYCEL-GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       286 ~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                      ++..+..++.+. +...++..-++--......|-.....+..|+..+...|+.++|....+++.....
T Consensus       582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~  649 (894)
T COG2909         582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL  649 (894)
T ss_pred             HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            445555555551 1122222222222222222322222234678888999999999999988876443

>PHA02875 ankyrin repeat protein; Provisional

Probab=82.71  E-value=8.5  Score=36.17  Aligned_cols=213  Identities=15%  Similarity=0.129  Sum_probs=107.7

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPNSKT--YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQ--TYESLIHGSLK  226 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~  226 (423)
                      ...+..|+.+-+..++    + .|..|+...  ..+.+...+..|+.+    +.+.+.+.|..|+..  .....+...++
T Consensus         7 ~~A~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          7 CDAILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             HHHHHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence            3445567776554444    4 566666432  344556666778875    445556667666533  12345566677


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCHH
Q 014502          227 ARDFDSVDRFYEEMMSLGIIPSIP---ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVD  301 (423)
Q Consensus       227 ~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~  301 (423)
                      .|+.+.+..+++    .|...+..   .-.+.+...+..|+.+    +++.+.+.|..|+...  -.+.+...+..|+.+
T Consensus        78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            888877655553    33222111   1123334445566664    5555566676655331  122344555678776


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH--HHHHHHHhhccccchHHHH
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV--EMVICSYFRCAAYDRLDLF  379 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~  379 (423)
                      -+..++    +.|..++.....-...+...+..|+.+    +.+.+.+.|..++.....  ..++...+..|..+.++.+
T Consensus       150 ~v~~Ll----~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L  221 (413)
T PHA02875        150 GIELLI----DHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF  221 (413)
T ss_pred             HHHHHH----hcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence            554444    444433321100112233345566654    444455666654322221  3455544556665554444


Q ss_pred             HHHHhCCCcccH
Q 014502          380 LDHIKGSYKLRR  391 (423)
Q Consensus       380 ~~~~~~~~~p~~  391 (423)
                         +..|..++.
T Consensus       222 ---l~~gad~n~  230 (413)
T PHA02875        222 ---IKRGADCNI  230 (413)
T ss_pred             ---HHCCcCcch
Confidence               456666653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.42  E-value=2.6  Score=24.97  Aligned_cols=26  Identities=15%  Similarity=0.077  Sum_probs=21.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502          396 FLVAGYRRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~m~~~g  421 (423)
                      -+..+|...|+.+.|.+++++....|
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            46788999999999999999887654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.30  E-value=2.3  Score=22.82  Aligned_cols=27  Identities=11%  Similarity=-0.022  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          394 YDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      +-.+..++.+.|++++|.+.|+++.+.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            456778888999999999999988753

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.93  E-value=47  Score=31.37  Aligned_cols=116  Identities=10%  Similarity=0.072  Sum_probs=62.8

Q ss_pred             CChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          122 QNVPFA-MHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNK  200 (423)
Q Consensus       122 ~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  200 (423)
                      |++..| .++|+-+....-.|+....-+.|  ....|+++.+...+.....  -+.....+...+++...+.|++++|..
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            443333 34555555443344444333333  3456677777666665543  223444566666777777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       201 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      .-+-|....++ +...........-..|-+|++...|++...
T Consensus       379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~  419 (831)
T PRK15180        379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL  419 (831)
T ss_pred             HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence            77666665554 443333333334445666666666666544

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=80.81  E-value=14  Score=27.65  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          232 SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       232 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      +..+.++.+..-++.|++.....-+.+|.+.+|+..|.++++-+..+
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33444555555566666666666666666666666666666665543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=80.71  E-value=65  Score=32.22  Aligned_cols=375  Identities=15%  Similarity=0.085  Sum_probs=179.8

Q ss_pred             HHHH-HhcCCchhHHHHHHHhhhc----cCCcChhhHHHH-HHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHH
Q 014502           43 LISR-LLQVPVSQIKTTLDSVDIF----AFNSSQFSWDAL-ITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLI  115 (423)
Q Consensus        43 ll~~-l~~~~~~~~~~~~~~m~~~----g~~p~~~~~~~l-i~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~  115 (423)
                      ++.. +.+.+...+...+++..+.    +..+-...|.-+ +..+ ..+++..|.+.++.+...-...+.|-..++..++
T Consensus       105 ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~  184 (608)
T PF10345_consen  105 LLARIYFKTNPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS  184 (608)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence            4433 4444544466666655222    222323333333 2222 3469999999976655544344556667776666


Q ss_pred             HHHh--cCCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHhc------CC-C
Q 014502          116 ALSG--KVQNVPFAMHVFTSMEAQG---------IKPDSAVFNSLICACL--CSGDVVTALSLFEIMVSS------EE-Y  175 (423)
Q Consensus       116 ~~~~--~~~~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~------~~-~  175 (423)
                      .+..  +.+..+.+.+..+++....         -.|...+|..+++.++  ..|+++.+.+.++++.+.      .. .
T Consensus       185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w  264 (608)
T PF10345_consen  185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW  264 (608)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence            6655  5566777777777764322         1345667777776554  567777777666555331      10 0


Q ss_pred             ---C-------------------CCHHh---------HHHHHHH--HHhcCCHHHHHHHH-------HHHH-HCCCCCC-
Q 014502          176 ---K-------------------PNSKT---------YDAFISG--FSSLGNVDAMNKWY-------AANI-AAGFSVN-  213 (423)
Q Consensus       176 ---~-------------------p~~~~---------~~~li~~--~~~~~~~~~a~~~~-------~~m~-~~~~~~~-  213 (423)
                         .                   |....         ..-++.+  .+..+..+.|.+++       ++.. .....++ 
T Consensus       265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~  344 (608)
T PF10345_consen  265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE  344 (608)
T ss_pred             CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence               0                   11111         1112222  22334443554444       4444 1111111 


Q ss_pred             -------HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHhcCCHHHHH
Q 014502          214 -------VQTYESLIHG---------SLKARDFDSVDRFYEEMMSLGI-IPS-----IPILEKVLEG--LCARRKLDRVK  269 (423)
Q Consensus       214 -------~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~~~-~p~-----~~~~~~li~~--~~~~g~~~~a~  269 (423)
                             ...|...+..         .+-.+++..|.+.++.|....- .|+     ...+...+.+  +...|+.+.|.
T Consensus       345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~  424 (608)
T PF10345_consen  345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL  424 (608)
T ss_pred             CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence                   1222222222         2346889999999998875311 121     2233333433  34569999999


Q ss_pred             HHHH--------HHHhCCCccCHHhHHHH--HHHHHhcC--CHHH--HHHHHHHHHhC-CCCCchHHHHHHHH-HHHHHh
Q 014502          270 SFLK--------FLLGGGWKINENMAQKL--VKCYCELG--RVDE--LEEQLETLTKC-NQSPEVLLHFFSGI-IRLYAL  333 (423)
Q Consensus       270 ~~~~--------~~~~~g~~~~~~~~~~l--i~~~~~~g--~~~~--a~~~~~~~~~~-~~~p~~~~~~~~~l-i~~~~~  333 (423)
                      ..|.        .....+...+..++..+  +-.+...+  ..++  +.++++.+... ...|+....++..+ +.++..
T Consensus       425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~  504 (608)
T PF10345_consen  425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNT  504 (608)
T ss_pred             HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhh
Confidence            9997        45555555555555432  11222222  2223  67777766552 22333322224444 333332


Q ss_pred             cCCh--hHHHHHHHHHH-----hCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH---HHhCCCcccHHHH-----HHH
Q 014502          334 SDRL--DDVEYSVGRMG-----KQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD---HIKGSYKLRRATY-----DFL  397 (423)
Q Consensus       334 ~g~~--~~a~~~~~~m~-----~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~---~~~~~~~p~~~~~-----~~l  397 (423)
                      ....  .++...+.+-.     ..+...--..+++.|..-+. .|+. |..+....   +..+...-....|     ..+
T Consensus       505 ~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l  583 (608)
T PF10345_consen  505 FEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGML  583 (608)
T ss_pred             CCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            2221  23333332221     11111100222343434443 4555 33333222   2222111123345     344


Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 014502          398 VAGYRRAGLSGKLDSVINEMK  418 (423)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~m~  418 (423)
                      ...+...|+.++|.....+..
T Consensus       584 ~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  584 ADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             HHHHHHcCcHHHHHHHHHHHH
Confidence            556788899999999888764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.53  E-value=5.4  Score=21.54  Aligned_cols=28  Identities=14%  Similarity=-0.019  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          392 ATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .+|..+...|...|++++|.+.|++-.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4678889999999999999999988654

...

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.42  E-value=36  Score=29.09  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=18.1

Q ss_pred             cHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          390 RRATYDFLVAGYRRAGLSGKLDSVIN  415 (423)
Q Consensus       390 ~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (423)
                      +..+...|+.+| ..|+.+++.+++.
T Consensus       227 d~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  227 DSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            466788888887 4688888777653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.40  E-value=31  Score=28.31  Aligned_cols=89  Identities=12%  Similarity=0.008  Sum_probs=51.2

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH-----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF-----ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      ...+...|++++|+.-++....    .|....+..+     -+.....|.+|+|...++.....+..  ......-.+.+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil  169 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL  169 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence            3455666777777777766654    1333333333     34455667777777777666644322  22233334566


Q ss_pred             HhcCCHHHHHHHHHHHHHCC
Q 014502          225 LKARDFDSVDRFYEEMMSLG  244 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~~~  244 (423)
                      ...|+-++|..-|+...+.+
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         170 LAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHcCchHHHHHHHHHHHHcc
Confidence            77777777777777766654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.09  E-value=47  Score=30.20  Aligned_cols=174  Identities=11%  Similarity=0.041  Sum_probs=86.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502           76 ALITSLQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACL  154 (423)
Q Consensus        76 ~li~~~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  154 (423)
                      ..+.++..++++++...++.....+...-. ....+|........+...+.+..++.+-.....  .+            
T Consensus        35 ~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~------------  100 (352)
T PF02259_consen   35 RALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLS--QN------------  100 (352)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc--cc------------
Confidence            334445888999888886554443332222 233344444444444444444444443332210  01            


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD  234 (423)
Q Consensus       155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  234 (423)
                       ..+.....+.+++=.  ....++..++..++..-.-         ++..+  ........+|..+...+.+.|.++.|.
T Consensus       101 -~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~---------~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~  166 (352)
T PF02259_consen  101 -PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRL---------VLSLI--LLPEELAETWLKFAKLARKAGNFQLAL  166 (352)
T ss_pred             -HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHH---------HHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHH
Confidence             111222233333222  1335555566555532110         11100  112334556777777778888888888


Q ss_pred             HHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          235 RFYEEMMSLGIIP---SIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       235 ~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ..+..+...+...   +......-....-..|+..+|...+++..+
T Consensus       167 ~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  167 SALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777776533111   233444445556667777777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 64/466 (13%), Positives = 123/466 (26%), Gaps = 173/466 (37%)

Query: 8   LSVAK--SSRYLLMPL-----RFDRLLCNTNTNSTSVS----SSNPLISRLLQVPVSQ-- 54
           L++    S   +L  L     + D    + + +S+++     S    + RLL+    +  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 55  --IKTTLDSV----DIFAFNSSQFSWDALITSLQSS--SPKKAQLVLEWRLDKMLKGNES 106
             +   L +V       AFN    S   L+T+          A       LD        
Sbjct: 247 LLV---LLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 107 CLDEYACLIA--LSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALS 164
             DE   L+   L  + Q++P         E     P                     LS
Sbjct: 301 --DEVKSLLLKYLDCRPQDLP--------REVLTTNP-------------------RRLS 331

Query: 165 LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS 224
           +      +E  +    T+D                 W          VN     ++I  S
Sbjct: 332 II-----AESIRDGLATWD----------------NWK--------HVNCDKLTTIIESS 362

Query: 225 LKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN 283
           L   +     + ++    L + P S  I   +L  +                    W   
Sbjct: 363 LNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI--------------------W--- 396

Query: 284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS 343
            ++                  + +  + K ++   V        I + ++          
Sbjct: 397 FDV---------------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------- 434

Query: 344 VGRMGKQGLSFKSAEDVEM---VICSYFRCAAYDRLDLFLDHIKG------SYKLRRAT- 393
                   L  K   +  +   ++  Y     +D  DL   ++         + L+    
Sbjct: 435 --------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 394 -------------YDFLVAGYRRAGL----SGKLDSVINEMKFAEY 422
                        + FL    R        SG + + + ++KF  Y
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--Y 530

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.3 bits (108), Expect = 2e-05
 Identities = 24/254 (9%), Positives = 65/254 (25%), Gaps = 19/254 (7%)

Query: 71  QFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV 130
           + +    +  L++      Q      L + L+     L +                A  +
Sbjct: 34  KRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSK--------------QMAGCL 79

Query: 131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS 190
                     P       L+        +    +      S  +     +   AF     
Sbjct: 80  EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH-SQAQLSGQQQRLLAFFKCCL 138

Query: 191 SLGNVDAMNKW---YAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP 247
               +   +     +         + +  Y +++ G  +   F  +      +   G+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198

Query: 248 SIPILEKVLEGLC-ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ 306
            +      L+ +    +    ++  L+ +   G K+       L+        +  + + 
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258

Query: 307 LETLTKCNQSPEVL 320
             T +   Q P  +
Sbjct: 259 KPTFSLPPQLPPPV 272

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 8/217 (3%)

Query: 32  TNSTSVSSSNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDA------LITSLQSSS 85
           T     S     ++RLLQ    ++   ++       + +Q S             L +  
Sbjct: 83  TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142

Query: 86  PKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAV 145
              A  +L     +  K     LD Y  ++    +       ++V   ++  G+ PD   
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 146 FNSLI-CACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAA 204
           + + + C      D  T     E M S E  K  +      +S       + A++K    
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261

Query: 205 NIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM 241
                          L+          S  + +  + 
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.58
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.55
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.48
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.28
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.27
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.26
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.21
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.07
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.9
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.84
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.69
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.56
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.56
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.54
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.52
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.36
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.34
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.31
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.28
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.03
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.98
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.96
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.91
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.9
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.55
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.47
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.4
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.33
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.23
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.1
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.96
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.63
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.57
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.29
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.17
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.14
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.92
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.91
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.73
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.72
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.49
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.29
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.91
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.63
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.35
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.28
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.88
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.83
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.79
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.91
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.9
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.84
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.81
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.38
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	89.22
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.54
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.39
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.3
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	87.32
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	85.06
2p58_C	116	Putative type III secretion protein YSCG; type III	83.17
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	83.04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	82.84
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.2
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.59
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.33
2p58_C	116	Putative type III secretion protein YSCG; type III	81.08
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	80.51

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.8e-34  Score=272.89  Aligned_cols=200  Identities=15%  Similarity=0.175  Sum_probs=181.6

Q ss_pred             HHHHhhCCC-C-CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------HHHHHHH
Q 014502           97 LDKMLKGNE-S-CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD---------VVTALSL  165 (423)
Q Consensus        97 ~~~m~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~  165 (423)
                      .+++.+.+. + ....++.+|++|++.|++++|.++|++|.+.|++||..+||++|.+|++.+.         +++|.++
T Consensus        13 ~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~l   92 (501)
T 4g26_A           13 SRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI   92 (501)
T ss_dssp             -----------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHH
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHH
Confidence            455555554 2 2456889999999999999999999999999999999999999999987664         6889999


Q ss_pred             HHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014502          166 FEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI  245 (423)
Q Consensus       166 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  245 (423)
                      |++|.+ .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+
T Consensus        93 f~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~  171 (501)
T 4g26_A           93 FKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV  171 (501)
T ss_dssp             HHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999999 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502          246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL  297 (423)
Q Consensus       246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  297 (423)
                      .||..||+++|.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=5.2e-34  Score=269.70  Aligned_cols=207  Identities=14%  Similarity=0.172  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC---------
Q 014502          125 PFAMHVFTSMEAQGIKPDSA-VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN---------  194 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~---------  194 (423)
                      ..+..+.+++.+++..+.+. .++.+|++|++.|++++|+++|++|.+ .|++||..|||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            44667778888888766654 689999999999999999999999999 8999999999999999997765         


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                      +++|.++|++|...|+.||..|||++|++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS  334 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~  334 (423)
                      |.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.+..|+..|  |+.++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T--~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST--FDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH--HHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH--HHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999  99999999864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.2e-32  Score=264.04  Aligned_cols=370  Identities=8%  Similarity=-0.085  Sum_probs=256.7

Q ss_pred             CCccccHHHHHHHhcCCc-hhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHH
Q 014502           35 TSVSSSNPLISRLLQVPV-SQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYA  112 (423)
Q Consensus        35 ~~~~~~~~ll~~l~~~~~-~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~  112 (423)
                      +++..++.++..+.+.+. .++..+++.|.+  ..|+..+|..+... +..|++++|..+    ++++... .+|..+++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~-~~~~~~~~  154 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL----LTKEDLY-NRSSACRY  154 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH----HHHTCGG-GTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH----HHHHhcc-ccchhHHH
Confidence            445567888888888884 456888888874  45677888888888 688999999999    4555322 46888899


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---
Q 014502          113 CLIALSGKVQNVPFAMHVFTSME-AQ--------------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEE---  174 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~-~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---  174 (423)
                      .++.+|.+.|++++|.++|+++. ..              |.+++..+|+.++.+|.+.|++++|+++|++|.+...   
T Consensus       155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  234 (597)
T 2xpi_A          155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY  234 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence            99999999999999999998432 21              2334578899999999999999999998888865211   


Q ss_pred             ------------------------------------------------------------------CCCCHHhHHHHHHH
Q 014502          175 ------------------------------------------------------------------YKPNSKTYDAFISG  188 (423)
Q Consensus       175 ------------------------------------------------------------------~~p~~~~~~~li~~  188 (423)
                                                                                        .+++..+++.++.+
T Consensus       235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~  314 (597)
T 2xpi_A          235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT  314 (597)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence                                                                              12566677778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV  268 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  268 (423)
                      |.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence            88888888888888888766533 55666666666666666666666666665432 34566677777777777777777


Q ss_pred             HHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      .++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+  |+.++.+|.+.|++++|.++|+++.
T Consensus       393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLP--YLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHH--HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777776642 23456677777777777777777777777766432 12333  6667777777777777777777776


Q ss_pred             hCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC----CCccc--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          349 KQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG----SYKLR--RATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       349 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      +.  .|.++.+|+.++..|.+.|+.+ +.+.+.+++..    +..|+  ..+|..++.+|.+.|++++|.++++++.+
T Consensus       469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL  544 (597)
T ss_dssp             HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            53  3445677777777777777763 55666665544    44555  56677777777777777777777776654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-31  Score=261.91  Aligned_cols=371  Identities=10%  Similarity=0.008  Sum_probs=310.2

Q ss_pred             CCCccccHHHHHHHhcCCc-hhHHHHHHHh-hhc--------------cCCcChhhHHHHHHH-HhcCCHHHHHHHHHHH
Q 014502           34 STSVSSSNPLISRLLQVPV-SQIKTTLDSV-DIF--------------AFNSSQFSWDALITS-LQSSSPKKAQLVLEWR   96 (423)
Q Consensus        34 ~~~~~~~~~ll~~l~~~~~-~~~~~~~~~m-~~~--------------g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~   96 (423)
                      .+++.+++.+...+.+.+. .++.++|+++ ...              |.+++..+|+.++.+ .+.|++++|.+.    
T Consensus       147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----  222 (597)
T 2xpi_A          147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC----  222 (597)
T ss_dssp             GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred             ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH----
Confidence            4566677888888888874 4557777743 222              334568889998888 788999999999    


Q ss_pred             HHHHhhCCCCCHhHHHHH--------------------------------------HHHHhcCCChhHHHHHHHHHHHCC
Q 014502           97 LDKMLKGNESCLDEYACL--------------------------------------IALSGKVQNVPFAMHVFTSMEAQG  138 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~m~~~g  138 (423)
                      |+++.+.++.+...+..+                                      +..|.+.|++++|.++|+++.+. 
T Consensus       223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-  301 (597)
T 2xpi_A          223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-  301 (597)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred             HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence            566665555454444433                                      55666788899999999988775 


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          139 IKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE  218 (423)
Q Consensus       139 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  218 (423)
                       +++..+|+.++.+|.+.|++++|.++|+++.+. + +.+..+++.++.++.+.|++++|.++++++.+.. ..+..+|+
T Consensus       302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  377 (597)
T 2xpi_A          302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL  377 (597)
T ss_dssp             -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred             -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence             579999999999999999999999999999873 2 4477899999999999999999999999998765 44789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG  298 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  298 (423)
                      .++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|
T Consensus       378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  455 (597)
T 2xpi_A          378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG  455 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence            99999999999999999999998754 3467899999999999999999999999999874 457889999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCC-hHhHHHHHHHHhhccc
Q 014502          299 RVDELEEQLETLTKCNQSPE-VLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ----GLSFKS-AEDVEMVICSYFRCAA  372 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~~l~~~~~~~~~  372 (423)
                      ++++|.++|+++.+..  |+ ..+  |+.++..|.+.|++++|.++|+++.+.    +..|.+ ..+|..++.+|.+.|+
T Consensus       456 ~~~~A~~~~~~~~~~~--~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          456 NILLANEYLQSSYALF--QYDPLL--LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             CHHHHHHHHHHHHHHC--CCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhC--CCChHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence            9999999999998854  43 334  999999999999999999999999875    555554 6789999999999999


Q ss_pred             cc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          373 YD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       373 ~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      .+ +.+.+.+++..+ +.+..+|..+..+|.+.|++++|.+.++++.+.
T Consensus       532 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          532 YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            95 677777777653 457899999999999999999999999998754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=9.1e-25  Score=202.08  Aligned_cols=353  Identities=11%  Similarity=0.043  Sum_probs=292.6

Q ss_pred             hcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH--HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh
Q 014502           48 LQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS--LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV  124 (423)
Q Consensus        48 ~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~  124 (423)
                      .+.+ ...+.+.+..+.+.  .|+......++..  ...|++++|...    ++...+..+.+..+|..+...+.+.|++
T Consensus        10 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~----~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHF----STLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            3344 34556777766543  4554444445544  688999999998    5566666777899999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHH
Q 014502          125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYA  203 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~  203 (423)
                      ++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.   .|+ ...+..+...+...|++++|.+.|+
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999998863 235668999999999999999999999999873   354 4567778888999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC
Q 014502          204 ANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN  283 (423)
Q Consensus       204 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~  283 (423)
                      ++.+.... +..+|+.+...+.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..... +.+
T Consensus       160 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~  236 (388)
T 1w3b_A          160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH  236 (388)
T ss_dssp             HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence            99987533 67899999999999999999999999998864 3456788999999999999999999999998853 335


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      ..++..+...|.+.|++++|...++++.+.+  |+.... |..+...|.+.|++++|.+.|+++.+.  .|+++.++..+
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  311 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDA-YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHH-HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHH
Confidence            7889999999999999999999999999854  554332 889999999999999999999999984  47789999999


Q ss_pred             HHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          364 ICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       364 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ...+.+.|+.+ +...+.+.+.. .+.+..++..+..++.+.|++++|.+.++++.+
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999995 56677666653 344688899999999999999999999999875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=3.7e-23  Score=191.29  Aligned_cols=355  Identities=11%  Similarity=0.004  Sum_probs=288.3

Q ss_pred             CCccccHHHHHH-HhcCCch-hHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHH
Q 014502           35 TSVSSSNPLISR-LLQVPVS-QIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEY  111 (423)
Q Consensus        35 ~~~~~~~~ll~~-l~~~~~~-~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~  111 (423)
                      |+......++.. +.+.+.. .+...+....+ ..+.+...|..+... ...|++++|.+.    ++++....+.+..+|
T Consensus        30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~  104 (388)
T 1w3b_A           30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEAIEH----YRHALRLKPDFIDGY  104 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHCCCHHHHHHH----HHHHHHcCcchHHHH
Confidence            333333334433 3444533 44555555544 334567788888888 799999999999    566666666778899


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      ..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++.+.  .+.+..+|..+...+.+
T Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  181 (388)
T 1w3b_A          105 INLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNA  181 (388)
T ss_dssp             HHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998642 24567888899999999999999999999873  23457789999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF  271 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  271 (423)
                      .|++++|.+.|+++.+.+.. +...|..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.
T Consensus       182 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  259 (388)
T 1w3b_A          182 QGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDT  259 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999987643 67889999999999999999999999987754 33578899999999999999999999


Q ss_pred             HHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          272 LKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       272 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                      ++++.+.. +.+..++..+...+.+.|++++|...++++.+..  |+.... |..+...+...|++++|.+.++++.+  
T Consensus       260 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~--  333 (388)
T 1w3b_A          260 YRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS-LNNLANIKREQGNIEEAVRLYRKALE--  333 (388)
T ss_dssp             HHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHTTTCHHHHHHHHHHHTT--
T ss_pred             HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence            99999864 3457789999999999999999999999998853  543322 88999999999999999999999987  


Q ss_pred             CCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCC
Q 014502          352 LSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGL  406 (423)
Q Consensus       352 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  406 (423)
                      ..|+++.++..+...+.+.|+.+ +...+.+.+.. .+.+...|..+...+.+.|+
T Consensus       334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTCC
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHccC
Confidence            45777999999999999999995 67777777653 23357788888888777653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=6.1e-22  Score=186.69  Aligned_cols=312  Identities=10%  Similarity=-0.001  Sum_probs=224.1

Q ss_pred             ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502           70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS  148 (423)
Q Consensus        70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  148 (423)
                      +...|..+... +..|++++|...    ++++....+.+..+|..+..++...|++++|...|+++.+.+ +.+..++..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   99 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ   99 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence            45566666666 678888888888    455555566678888888888888888888888888887764 235678888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSV  212 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~  212 (423)
                      +..+|.+.|++++|.+.|+++.+.   .|+.    ..+..+            ...+.+.|++++|.++|+++.+... .
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~  175 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-W  175 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence            888888888888888888888762   3443    444444            3347788888888888888877643 3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH--
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL--  290 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--  290 (423)
                      +..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...++++.... +.+...+..+  
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~  253 (450)
T 2y4t_A          176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ  253 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence            67778888888888888888888888876653 3456778888888888888888888888887642 2234444444  


Q ss_pred             ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502          291 ----------VKCYCELGRVDELEEQLETLTKCNQSPEVL---LHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA  357 (423)
Q Consensus       291 ----------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  357 (423)
                                ...|.+.|++++|...|+++.+..  |+..   ..+|..+...+.+.|++++|...++++.+.  .|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~  329 (450)
T 2y4t_A          254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccH
Confidence                      677888888888888888887733  4421   123777788888888888888888887763  45567


Q ss_pred             HhHHHHHHHHhhccccc-hHHHHHHHHhCCCcc-cHHHHHHHH
Q 014502          358 EDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKL-RRATYDFLV  398 (423)
Q Consensus       358 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~l~  398 (423)
                      ..|..+..+|...|+.+ +...+.+.+..  .| +...+..+.
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            88888888888888885 55666555552  34 355555555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.1e-21  Score=184.84  Aligned_cols=312  Identities=11%  Similarity=0.012  Sum_probs=256.5

Q ss_pred             HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 014502           97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYK  176 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  176 (423)
                      +.......+.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.  -+
T Consensus        15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p   91 (450)
T 2y4t_A           15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KM   91 (450)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence            344445556688899999999999999999999999998763 347889999999999999999999999999873  24


Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHH
Q 014502          177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV---QTYESLI------------HGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .+..++..+..+|.+.|++++|.+.|+++.+.... +.   ..+..+.            ..+.+.|++++|++.|+++.
T Consensus        92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  170 (450)
T 2y4t_A           92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL  170 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45778999999999999999999999999986432 33   5665554            44889999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502          242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                      +.. +.+...+..+...|...|++++|.++++++.+.. +.+..++..+...|...|++++|...|+++.+.  .|+...
T Consensus       171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~  246 (450)
T 2y4t_A          171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR  246 (450)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence            764 4567889999999999999999999999998763 456889999999999999999999999999874  455443


Q ss_pred             HHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCChH----hHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          322 HFFSGI------------IRLYALSDRLDDVEYSVGRMGKQGLSFKSAE----DVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       322 ~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      . +..+            ...|...|++++|...|+++.+.  .|.++.    .+..+...+.+.|+.+ +...+.+.+.
T Consensus       247 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  323 (450)
T 2y4t_A          247 C-FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ  323 (450)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2 4444            78899999999999999999884  455543    6788899999999995 6777777765


Q ss_pred             CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      . .+.+...|..+..+|.+.|++++|...+++..+.
T Consensus       324 ~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          324 M-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             h-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4 2446889999999999999999999999998653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.8e-21  Score=184.27  Aligned_cols=360  Identities=8%  Similarity=-0.094  Sum_probs=290.0

Q ss_pred             HHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC
Q 014502           45 SRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ  122 (423)
Q Consensus        45 ~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~  122 (423)
                      ..+.+.+ ...+...+..+.+..  |+...|..+..+ ...|++++|.+.    +++..+..+.+..+|..+..++.+.|
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEM----STKALELKPDYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHH----HHHHhccChHHHHHHHHHHHHHHHHh
Confidence            3445555 456688888887665  688888888888 799999999999    56666667778899999999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCC-------------------------------------------------------------
Q 014502          123 NVPFAMHVFTSMEAQGIKP-------------------------------------------------------------  141 (423)
Q Consensus       123 ~~~~a~~~~~~m~~~g~~p-------------------------------------------------------------  141 (423)
                      ++++|...|+++...+...                                                             
T Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
T 2gw1_A           88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF  167 (514)
T ss_dssp             CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence            9999999999997764210                                                             


Q ss_pred             -----------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----cCCC-------CCCHHhHHHHHHHH
Q 014502          142 -----------------DSAVFNSLICACLC---SGDVVTALSLFEIMVS-----SEEY-------KPNSKTYDAFISGF  189 (423)
Q Consensus       142 -----------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~~~~~li~~~  189 (423)
                                       +...+......+..   .|++++|...|+++.+     ..+.       +.+..++..+...+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (514)
T 2gw1_A          168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK  247 (514)
T ss_dssp             HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence                             13333444444444   8999999999999876     2111       22356788888999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK  269 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  269 (423)
                      ...|++++|.+.++++.+....  ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus       248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  324 (514)
T 2gw1_A          248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG  324 (514)
T ss_dssp             HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999987544  8889999999999999999999999998764 345678999999999999999999


Q ss_pred             HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          270 SFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       270 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..++++.+.. +.+...+..+...|...|++++|...++++.+..  |+... +|..+...|...|++++|...++++.+
T Consensus       325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPE-VPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999864 3356788889999999999999999999998753  43222 288899999999999999999999887


Q ss_pred             CCCCCCCh------HhHHHHHHHHhh---ccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          350 QGLSFKSA------EDVEMVICSYFR---CAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       350 ~~~~~~~~------~~~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ..  |.++      ..+..+...+..   .|+.+ +...+.+.+... +.+..++..+..++.+.|++++|...+++..+
T Consensus       401 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  477 (514)
T 2gw1_A          401 LE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD  477 (514)
T ss_dssp             HH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            43  3333      388999999999   99995 677777766542 44678899999999999999999999998765


Q ss_pred             c
Q 014502          420 A  420 (423)
Q Consensus       420 ~  420 (423)
                      .
T Consensus       478 ~  478 (514)
T 2gw1_A          478 L  478 (514)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=1.1e-18  Score=158.78  Aligned_cols=317  Identities=11%  Similarity=-0.015  Sum_probs=247.4

Q ss_pred             hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      +..|..+-.. ...|++++|...    +++..+..+.+..++..+...+...|++++|...|++..+.. +.+...|..+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   77 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQ----FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHH----HHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence            3445555555 789999999999    556666666788999999999999999999999999998863 2367889999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKP----NSKTYDAF------------ISGFSSLGNVDAMNKWYAANIAAGFSVN  213 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~  213 (423)
                      ..++...|++++|...|++..+.   .|    +...+..+            ...+...|++++|.++++++.+... .+
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~  153 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WD  153 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-Cc
Confidence            99999999999999999999862   45    33444444            5788899999999999999988753 37


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH-----
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ-----  288 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-----  288 (423)
                      ...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~  231 (359)
T 3ieg_A          154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence            7888899999999999999999999988764 4567888999999999999999999999998753 22333333     


Q ss_pred             -------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChH
Q 014502          289 -------KLVKCYCELGRVDELEEQLETLTKCNQSPEVLL---HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAE  358 (423)
Q Consensus       289 -------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  358 (423)
                             .+...+.+.|++++|...++++.+..  |+...   ..+..+...|...|++++|.+.+++..+.  .|+++.
T Consensus       232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~  307 (359)
T 3ieg_A          232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVN  307 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHH
Confidence                   23666889999999999999988744  43321   22556778899999999999999999884  466789


Q ss_pred             hHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh
Q 014502          359 DVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR  403 (423)
Q Consensus       359 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  403 (423)
                      .+..+...+...|+.+ +...+.+.+.. .+-+...+..+..+...
T Consensus       308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH-NENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHH
Confidence            9999999999999995 56666666653 23345666666665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-19  Score=173.87  Aligned_cols=323  Identities=11%  Similarity=-0.039  Sum_probs=263.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVV  160 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  160 (423)
                      +..|++++|+..|    +++.... ||..+|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..++...|+++
T Consensus        17 ~~~g~~~~A~~~~----~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           17 FRNKKYDDAIKYY----NWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHTSCHHHHHHHH----HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhccHHHHHHHH----HHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence            7899999999995    5555544 689999999999999999999999999999875 336789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCC--------------------------------------------------------------
Q 014502          161 TALSLFEIMVSSEEYKPN--------------------------------------------------------------  178 (423)
Q Consensus       161 ~A~~~~~~m~~~~~~~p~--------------------------------------------------------------  178 (423)
                      +|...|+++.+. + +++                                                              
T Consensus        91 ~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (514)
T 2gw1_A           91 DAMFDLSVLSLN-G-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF  168 (514)
T ss_dssp             HHHHHHHHHHHS-S-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhc-C-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence            999999998762 2 111                                                              


Q ss_pred             -----------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHH
Q 014502          179 -----------------SKTYDAFISGFSS---LGNVDAMNKWYAANIA-----AGF--------SVNVQTYESLIHGSL  225 (423)
Q Consensus       179 -----------------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~  225 (423)
                                       ...+......+..   .|++++|..+|+++.+     ..-        ..+..++..+...+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (514)
T 2gw1_A          169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF  248 (514)
T ss_dssp             TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence                             2222333333333   8999999999999987     311        224567888899999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      ..|++++|...|+++.+..  |+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|..
T Consensus       249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999998765  447889999999999999999999999999864 3467788899999999999999999


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      .++++.+..  |+... .+..+...|...|++++|...++++.+.  .|.++..+..+...+...|+.+ +...+.+.+.
T Consensus       326 ~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          326 DFDKAKELD--PENIF-PYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHTC--SSCSH-HHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--hhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999998854  43322 2888999999999999999999999874  4667899999999999999995 6777776664


Q ss_pred             CCC-ccc----HHHHHHHHHHHHh---cCChhHHHHHHHHHHh
Q 014502          385 GSY-KLR----RATYDFLVAGYRR---AGLSGKLDSVINEMKF  419 (423)
Q Consensus       385 ~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~  419 (423)
                      ..- .++    ...|..+..++.+   .|++++|...+++..+
T Consensus       401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            311 111    3389999999999   9999999999998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=1.5e-18  Score=158.02  Aligned_cols=303  Identities=11%  Similarity=0.004  Sum_probs=250.1

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      |+..+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|++..+.  .+.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence            45678888999999999999999999998864 336889999999999999999999999999873  233667899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFS--VNVQTYESL------------IHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL  252 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  252 (423)
                      ..+...|++++|.+.|++..+....  .+...+..+            ...+...|++++|.+.++++.+.. +.+...+
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  157 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR  157 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999999999999999999886430  144555544            578899999999999999998764 4567889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH-------
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFS-------  325 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~-------  325 (423)
                      ..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++..+..  |+.... +.       
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~~~~~~~  233 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRC-FAHYKQVKK  233 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHH-HHHHHHHHH
Confidence            999999999999999999999999874 4578899999999999999999999999998854  443321 22       


Q ss_pred             -----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHh----HHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHH
Q 014502          326 -----GIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAED----VEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYD  395 (423)
Q Consensus       326 -----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~  395 (423)
                           .+...+...|++++|...+++..+..  |.++..    +..+...+.+.|+.+ +...+.+.+.. .+.+..+|.
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~  310 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALK  310 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHH
Confidence                 23667899999999999999998844  444533    456788999999995 67777777664 244688999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          396 FLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      .+..++.+.|++++|...+++..+.
T Consensus       311 ~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          311 DRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=7.9e-19  Score=157.97  Aligned_cols=293  Identities=10%  Similarity=-0.022  Sum_probs=216.0

Q ss_pred             cChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 014502           69 SSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFN  147 (423)
Q Consensus        69 p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  147 (423)
                      .+...+..+... +..|++++|.+.    ++++.+..+.+...+..++..+.+.|++++|..+++++.+.. +.+...|.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~----~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~   94 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKL----TSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF   94 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence            344444555555 677888888888    455556666677777778888888888888888888888753 23567788


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502          148 SLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK  226 (423)
Q Consensus       148 ~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  226 (423)
                      .+...+...| ++++|.+.|++..+.  .+.+...|..+...+...|++++|.+.+++..+.... +...+..+...|..
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~  171 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence            8888888888 888888888888762  2335667888888888888888888888888876533 45667778888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CccCHHhHHHHHHHHHhcC
Q 014502          227 ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG--------WKINENMAQKLVKCYCELG  298 (423)
Q Consensus       227 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--------~~~~~~~~~~li~~~~~~g  298 (423)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+..        .+....++..+..+|...|
T Consensus       172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            888888888888887654 4456778888888888888888888888876531        1233567778888888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHH-hhccccch
Q 014502          299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSY-FRCAAYDR  375 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~-~~~~~~~~  375 (423)
                      ++++|...+++..+..  |+.... |..+...|...|++++|.+.|++..+  +.|+++..+..+..++ ...|+.++
T Consensus       251 ~~~~A~~~~~~a~~~~--~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~a  323 (330)
T 3hym_B          251 KYAEALDYHRQALVLI--PQNAST-YSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSEA  323 (330)
T ss_dssp             CHHHHHHHHHHHHHHS--TTCSHH-HHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC---
T ss_pred             CHHHHHHHHHHHHhhC--ccchHH-HHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchhc
Confidence            8888888888887743  332222 77788888888888888888888776  4566777777777777 45555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.6e-18  Score=156.04  Aligned_cols=294  Identities=9%  Similarity=-0.040  Sum_probs=241.2

Q ss_pred             CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHH
Q 014502          104 NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYD  183 (423)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  183 (423)
                      ...+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.  .+.+...+.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHH
Confidence            34577788899999999999999999999998864 335667778889999999999999999999873  234677888


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          184 AFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR  262 (423)
Q Consensus       184 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  262 (423)
                      .+...+...| ++++|.+.|++..+.... +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            8999999999 999999999999987533 67889999999999999999999999998764 33456677789999999


Q ss_pred             CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCchHHHHHHHHHHHHHhc
Q 014502          263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ--------SPEVLLHFFSGIIRLYALS  334 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~p~~~~~~~~~li~~~~~~  334 (423)
                      |++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+...        ......  |..+...|...
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~  249 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL--LNNLGHVCRKL  249 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH--HHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH--HHHHHHHHHHh
Confidence            99999999999999874 45678899999999999999999999999876321        111233  88999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHH-HhcCChh
Q 014502          335 DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGY-RRAGLSG  408 (423)
Q Consensus       335 g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~  408 (423)
                      |++++|...+++..+.  .|.++..+..+...+.+.|+.+ +.+.+.+.+.. .+.+...+..+..++ ...|+.+
T Consensus       250 g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          250 KKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             cCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence            9999999999999884  4667999999999999999996 56666555543 244677888888888 4556544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=1.1e-18  Score=168.25  Aligned_cols=359  Identities=8%  Similarity=-0.042  Sum_probs=271.3

Q ss_pred             HHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc
Q 014502           43 LISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK  120 (423)
Q Consensus        43 ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~  120 (423)
                      +-..+.+.+ ...+...+..+.+..+ .+...|..+... ...|++++|.+.    +++.....+.+..++..+..++..
T Consensus        31 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           31 RGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEF----TTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHH----HHHHHhcCCchHHHHHHHHHHHHH
Confidence            334555566 4456888888866543 356677777777 799999999999    566666677789999999999999


Q ss_pred             CCChhHHHHHHHHHHHCCC------------------------------------CCCHH--------------------
Q 014502          121 VQNVPFAMHVFTSMEAQGI------------------------------------KPDSA--------------------  144 (423)
Q Consensus       121 ~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~--------------------  144 (423)
                      .|++++|...|+.+....-                                    .|+..                    
T Consensus       106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
T 3fp2_A          106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT  185 (537)
T ss_dssp             HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred             cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence            9999999999964421110                                    01111                    


Q ss_pred             ----------HHHHHHHHHHc--------cCCHHHHHHHHHHHHhcCCCCCC--------HHhHHHHHHHHHhcCCHHHH
Q 014502          145 ----------VFNSLICACLC--------SGDVVTALSLFEIMVSSEEYKPN--------SKTYDAFISGFSSLGNVDAM  198 (423)
Q Consensus       145 ----------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~--------~~~~~~li~~~~~~~~~~~a  198 (423)
                                ....+...+..        .|++++|..+|+++.+.   .|+        ..++..+...+...|++++|
T Consensus       186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence                      11111111111        14788999999999862   344        23567777888999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          199 NKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       199 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      .+.+++..+.  .|+..+|..+...+...|++++|.+.|++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus       263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            9999999987  4558889999999999999999999999998764 345788999999999999999999999999886


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh-
Q 014502          279 GWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA-  357 (423)
Q Consensus       279 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-  357 (423)
                      . +.+...+..+...|...|++++|...++++.+..  |+.... +..+...|...|++++|...|+++.+..  |.++ 
T Consensus       340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~  413 (537)
T 3fp2_A          340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEV-PTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEK  413 (537)
T ss_dssp             C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSS
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchh
Confidence            4 3356788889999999999999999999998854  443322 8889999999999999999999987633  1112 


Q ss_pred             -----HhHHHHHHHHhhc----------cccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          358 -----EDVEMVICSYFRC----------AAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       358 -----~~~~~l~~~~~~~----------~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                           ..+......+...          |+.+ +...+.+.+.. .+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                 2234445677777          8885 67777766654 244678899999999999999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=9.9e-21  Score=184.54  Aligned_cols=152  Identities=14%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSS--EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES  219 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  219 (423)
                      -..+||++|++|++.|++++|.++|++|.+.  .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            4568999999999999999999999887641  47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC------HHhHHHHHH
Q 014502          220 LIHGSLKARDF-DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN------ENMAQKLVK  292 (423)
Q Consensus       220 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~  292 (423)
                      +|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+.    .+++.++++ .-++.|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999884 78899999999999999999999888765543    344444444 3345444      445555667


Q ss_pred             HHHhcC
Q 014502          293 CYCELG  298 (423)
Q Consensus       293 ~~~~~g  298 (423)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1.8e-17  Score=159.60  Aligned_cols=335  Identities=9%  Similarity=-0.019  Sum_probs=255.6

Q ss_pred             hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      ...|..+-.. +..|++++|.+.    +++.....+.+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l   99 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKY----YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHH----HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHH
Confidence            3444444444 799999999999    566667777789999999999999999999999999998874 3368899999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCC-----------------------------------CCCCHH--------------
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEE-----------------------------------YKPNSK--------------  180 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~-----------------------------------~~p~~~--------------  180 (423)
                      ..++...|++++|...|+.+.....                                   ..|+..              
T Consensus       100 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            9999999999999999964422000                                   001111              


Q ss_pred             ----------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCC
Q 014502          181 ----------------TYDAFISGFSS--------LGNVDAMNKWYAANIAAGFSVN-------VQTYESLIHGSLKARD  229 (423)
Q Consensus       181 ----------------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~g~  229 (423)
                                      ....+...+..        .|++++|.++++++.+.... +       ..++..+...+...|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhccc
Confidence                            11111111111        14788999999998876432 2       2356677788889999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET  309 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  309 (423)
                      +++|.+.|++..+.  .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999875  4667888899999999999999999999998864 34678899999999999999999999999


Q ss_pred             HHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCC-
Q 014502          310 LTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSY-  387 (423)
Q Consensus       310 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-  387 (423)
                      +.+..  |+.... |..+...|...|++++|...++++.+.  .|.++..+..+...+...|+.+ +...+.+.+...- 
T Consensus       336 a~~~~--~~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          336 AQSLN--PENVYP-YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHC--TTCSHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            98854  443222 888999999999999999999999884  4667899999999999999995 6777776654321 


Q ss_pred             ----cccHHHHHHHHHHHHhc----------CChhHHHHHHHHHHh
Q 014502          388 ----KLRRATYDFLVAGYRRA----------GLSGKLDSVINEMKF  419 (423)
Q Consensus       388 ----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~  419 (423)
                          ......+.....++.+.          |++++|...+++..+
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence                11223345566778888          999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=2.5e-20  Score=181.73  Aligned_cols=120  Identities=10%  Similarity=0.117  Sum_probs=112.1

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIA---AGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK  254 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  254 (423)
                      -..|||+||++|++.|++++|.++|++|.+   .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            356899999999999999999999988764   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc
Q 014502          255 VLEGLCARRKL-DRVKSFLKFLLGGGWKINENMAQKLVKCYCEL  297 (423)
Q Consensus       255 li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  297 (423)
                      +|+++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            99999999985 78999999999999999999999998766554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=3.5e-18  Score=156.38  Aligned_cols=278  Identities=11%  Similarity=0.007  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502          109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG  188 (423)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  188 (423)
                      ..+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+.  .+.+..++..+...
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~  141 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVS  141 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            344555555555555555555555555442 224445555555555555555555555555441  12234455555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRV  268 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  268 (423)
                      +...|++++|.+.++++...... +...+..+...       .           ....+ ...+. .+..+...|++++|
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-----------~~~~~-~~~~~-~~~~~~~~~~~~~A  200 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-----------GGAGL-GPSKR-ILGSLLSDSLFLEV  200 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------C-TTHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-----------hhhcc-cHHHH-HHHHHhhcccHHHH
Confidence            55555555555555555544322 11111110000       0           00000 00000 12222245555555


Q ss_pred             HHHHHHHHhCCCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          269 KSFLKFLLGGGWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       269 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      ...++++.+..... +..++..+...|.+.|++++|...++++.+..  |+... +|..+...|...|++++|...|++.
T Consensus       201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a  277 (368)
T 1fch_A          201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYL-LWNKLGATLANGNQSEEAVAAYRRA  277 (368)
T ss_dssp             HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555432110 24455555555555555555555555555422  32211 1555555555555555555555555


Q ss_pred             HhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC----------CcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          348 GKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS----------YKLRRATYDFLVAGYRRAGLSGKLDSVIN  415 (423)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (423)
                      .+.  .|.++..+..+...|.+.|+.+ +...+.+.+...          .+....+|..+..++.+.|++++|..+++
T Consensus       278 l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          278 LEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            542  2344555555555555555553 344444333211          01125778888888889999988888765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=6.2e-18  Score=154.73  Aligned_cols=274  Identities=8%  Similarity=-0.036  Sum_probs=163.6

Q ss_pred             ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 014502           70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNS  148 (423)
Q Consensus        70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  148 (423)
                      +...|..+-.. ...|++++|...    +++..+..+.+..++..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~  137 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLL----FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA  137 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHH----HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence            34556666666 799999999999    677777777889999999999999999999999999998874 347889999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNS-KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA  227 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  227 (423)
                      +..++...|++++|.+.|+++.+.   .|+. ..+..+...       ..           ...+. ..+.. +..+...
T Consensus       138 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~-------~~-----------~~~~~-~~~~~-~~~~~~~  194 (368)
T 1fch_A          138 LAVSFTNESLQRQACEILRDWLRY---TPAYAHLVTPAEEG-------AG-----------GAGLG-PSKRI-LGSLLSD  194 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT---STTTGGGCC----------------------------------CT-THHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHH-------hh-----------hhccc-HHHHH-HHHHhhc
Confidence            999999999999999999999873   2432 222211000       00           00000 01111 1112244


Q ss_pred             CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          228 RDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQ  306 (423)
Q Consensus       228 g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~  306 (423)
                      |++++|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5555555555555443211 134455555555555555555555555555432 22344555555555556666666666


Q ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCCChHhHHHHHHHHhhccccch
Q 014502          307 LETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL---------SFKSAEDVEMVICSYFRCAAYDR  375 (423)
Q Consensus       307 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~  375 (423)
                      ++++.+..  |+.... +..+...|...|++++|...|++..+...         .+..+..|..+..+|...|+.+.
T Consensus       274 ~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          274 YRRALELQ--PGYIRS-RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHhC--CCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            55555422  332211 55555566666666666666655554210         01115666666777777666653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.81  E-value=1.4e-17  Score=152.40  Aligned_cols=229  Identities=8%  Similarity=-0.012  Sum_probs=119.7

Q ss_pred             HHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502           74 WDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA  152 (423)
Q Consensus        74 ~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  152 (423)
                      |..+... +..|++++|...    +++.....+.+..+|..+...+.+.|++++|...|++..+.. +.+..+|..+..+
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILF----MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH----HHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4444333 466666666666    344444444555666666666666666666666666665542 2245566666666


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCCH-----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPNS-----------KTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VNVQTYESL  220 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l  220 (423)
                      |...|++++|...|+++.+.   .|+.           ..+..+...+...|++++|.++++++.+.... ++..++..+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            66666666666666665541   1221           11222345555556666666666665554321 135555555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      ...|.+.|++++|++.|++..+.. +.+..+|..+...|...|++++|...++++.+.. +.+..++..+..+|.+.|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            566666666666666666555432 2334555555555666666666666666555532 22345555555556666666


Q ss_pred             HHHHHHHHHHHh
Q 014502          301 DELEEQLETLTK  312 (423)
Q Consensus       301 ~~a~~~~~~~~~  312 (423)
                      ++|...|+++.+
T Consensus       298 ~~A~~~~~~al~  309 (365)
T 4eqf_A          298 REAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666665555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.79  E-value=2e-17  Score=151.28  Aligned_cols=277  Identities=8%  Similarity=-0.060  Sum_probs=164.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|++..+.  .+.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence            44557777777777777777777777777653 235667777777777777777777777777652  133466777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES----------LIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKV  255 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l  255 (423)
                      .+|...|++++|.+.|+++.+.... +...+..          +...+.+.|++++|.+.|+++.+.... ++..++..+
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            7777777777777777777764311 2222222          255666667777777777666654311 145666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC
Q 014502          256 LEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD  335 (423)
Q Consensus       256 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g  335 (423)
                      ...+...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++++.+.  .|+.... |..+...|...|
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~g  295 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRS-RYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHH-HHHHHHHHHHCC
Confidence            666666667777766666666542 334556666666666666666666666666653  2432221 566666666666


Q ss_pred             ChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          336 RLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVIN  415 (423)
Q Consensus       336 ~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (423)
                      ++++|...|++..+......++                +        .......+...|..+..++...|+.+.+.++.+
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~----------------~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQ----------------Q--------QVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------------------------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCcccCCC----------------c--------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            6666666666665421100000                0        000001135677888888888888887776654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.79  E-value=9.8e-17  Score=144.00  Aligned_cols=265  Identities=12%  Similarity=0.032  Sum_probs=198.6

Q ss_pred             hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      ...|-.+... ...|++++|...    +++..+..+.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   95 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALA----FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL   95 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence            3344444444 688999999998    556666666688888899999999999999999999988763 3367788888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF--------------IS-GFSSLGNVDAMNKWYAANIAAGFSVNV  214 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~  214 (423)
                      ...+...|++++|.+.+++..+..  +.+...+..+              .. .+...|++++|.+.++++.+.... +.
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~  172 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DA  172 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CH
Confidence            999999999999999999888721  2222333333              22 366778888899988888876533 67


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY  294 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  294 (423)
                      ..+..+...|.+.|++++|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            788888888888899999999888887654 3456778888888888888988888888887753 34567788888888


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCch-----------HHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          295 CELGRVDELEEQLETLTKCNQSPEV-----------LLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       295 ~~~g~~~~a~~~~~~~~~~~~~p~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      .+.|++++|...++++.+..  |+.           ....|..+...+...|+.++|..++++.
T Consensus       251 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          251 SNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            88888888888888877643  330           2223788888888888888888877643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=6.6e-18  Score=153.03  Aligned_cols=282  Identities=9%  Similarity=0.065  Sum_probs=117.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT  161 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  161 (423)
                      ..|+.++|.+.    ++++     +++.+|..|..++.+.|++++|++.|.+.      +|...|..++.++...|++++
T Consensus        15 ~~~~ld~A~~f----ae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           15 HIGNLDRAYEF----AERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHH----HHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence            44557777777    3443     33457888888888888888888888542      466788888888888888888


Q ss_pred             HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       162 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      |+.+++..++ .  .++..+.+.++.+|.+.|+++++.++++       .|+..+|+.+.+.|...|.+++|...|..+ 
T Consensus        80 Ai~yl~~ark-~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-  148 (449)
T 1b89_A           80 LVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-  148 (449)
T ss_dssp             --------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-
T ss_pred             HHHHHHHHHH-h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence            8886666655 2  4556777788888888888888777774       356678888888888888888888888765 


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502          242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                              ..|..+..++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.   ..|+.  
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--  209 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--  209 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--
Confidence                    36778888888888888888888877      266788888888888888888855544322   33433  


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc---chHHHHHHHHhCCCcc------cHH
Q 014502          322 HFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY---DRLDLFLDHIKGSYKL------RRA  392 (423)
Q Consensus       322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~p------~~~  392 (423)
                        ...++..|.+.|++++|..+++....  ..+.....|+-+...|++-+--   +.++.|...+  .++|      +..
T Consensus       210 --l~~lv~~Yek~G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~  283 (449)
T 1b89_A          210 --LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAH  283 (449)
T ss_dssp             --HHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTT
T ss_pred             --HHHHHHHHHHCCCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence              33577788888888888888888764  4455677777777777765322   2344333221  2233      355


Q ss_pred             HHHHHHHHHHhcCChhHHHHHH
Q 014502          393 TYDFLVAGYRRAGLSGKLDSVI  414 (423)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~  414 (423)
                      .|.-++-.|.+.++++.|....
T Consensus       284 ~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          284 LWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhchHHHHHHHH
Confidence            6888888888888888776643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=1.7e-16  Score=140.17  Aligned_cols=223  Identities=9%  Similarity=0.005  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISG  188 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~  188 (423)
                      ....+.++|...|+++.|...++.    .-+|+..++..+...+...|+.++|++.++++.. .+..| +...+..+...
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~  110 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASI  110 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHH
Confidence            334445555566666555554432    1234444555555555555566666666665554 33223 23333444455


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL---EKVLEGLCARRKL  265 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~  265 (423)
                      +...|++++|++.+++      ..+...+..+...|.+.|++++|.+.|+++.+..  |+....   ..++..+...|++
T Consensus       111 ~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~  182 (291)
T 3mkr_A          111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL  182 (291)
T ss_dssp             HHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence            5556666666655554      2345555555555566666666666665555432  332111   1122222333555


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH-HHHHH
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD-VEYSV  344 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~-a~~~~  344 (423)
                      ++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+..  |+.... +..++..+...|+.++ +.+++
T Consensus       183 ~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~-l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          183 QDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET-LINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             HHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence            5555555555554 23445555555555555555555555555555422  332221 4445555555555543 34555


Q ss_pred             HHHHh
Q 014502          345 GRMGK  349 (423)
Q Consensus       345 ~~m~~  349 (423)
                      +++.+
T Consensus       259 ~~~~~  263 (291)
T 3mkr_A          259 SQLKD  263 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=1.5e-16  Score=142.77  Aligned_cols=277  Identities=10%  Similarity=-0.032  Sum_probs=159.9

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.|+++.+.  .+.+..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence            44556777777888888888888888877753 236677777888888888888888888887762  234566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL--------------IH-GSLKARDFDSVDRFYEEMMSLGIIPSIPI  251 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  251 (423)
                      ..+...|++++|.+.+++..+.... +...+..+              .. .+...|++++|.+.++++.+.. +.+...
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  174 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL  174 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence            8888888888888888887766422 23333332              11 2445555555555555554432 223445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      +..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..  |+.... |..+...|
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~l~~~~  250 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRV-MYNMAVSY  250 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH-HHHHHHHH
Confidence            5555555555555555555555555432 2234445555555555555555555555554422  222111 44555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHH
Q 014502          332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLD  411 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  411 (423)
                      ...|++++|.+.+++..+......++.            +            ......+...|..+..++.+.|++++|.
T Consensus       251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~------------~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          251 SNMSQYDLAAKQLVRAIYMQVGGTTPT------------G------------EASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTSCC-----------------------------CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCcccccc------------c------------cchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            555555555555555443211000000            0            0000114677888889999999999988


Q ss_pred             HHHHH
Q 014502          412 SVINE  416 (423)
Q Consensus       412 ~~~~~  416 (423)
                      .++++
T Consensus       307 ~~~~~  311 (327)
T 3cv0_A          307 LTYAQ  311 (327)
T ss_dssp             HHTTC
T ss_pred             HHHHH
Confidence            88764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.76  E-value=8.8e-16  Score=135.53  Aligned_cols=274  Identities=10%  Similarity=0.008  Sum_probs=206.4

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502          115 IALSGKVQNVPFAMHVFTSMEAQGIKPDS--AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL  192 (423)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  192 (423)
                      ++.....|+++.|+..++.....  .|+.  .....+.++|...|++++|+..++..     -+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence            34455679999999988876543  3433  45566788999999999998766442     356778888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014502          193 GNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSF  271 (423)
Q Consensus       193 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  271 (423)
                      ++.++|++.++++...+..| +...+..+...+.+.|++++|++.+++      +.+...+..+...+.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999998876555 455666777889999999999999887      46778888999999999999999999


Q ss_pred             HHHHHhCCCccCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          272 LKFLLGGGWKINENMA---QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       272 ~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      ++++.+..  |+....   ..++..+...|++++|..+|+++.+..  |+... +|+.+..++...|++++|...|++..
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~-~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLL-LLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99998863  553211   223344455689999999999998853  44332 28889999999999999999999988


Q ss_pred             hCCCCCCChHhHHHHHHHHhhccccc-hH-HHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHH
Q 014502          349 KQGLSFKSAEDVEMVICSYFRCAAYD-RL-DLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSV  413 (423)
Q Consensus       349 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  413 (423)
                      +  ..|+++.++..++..+...|+.+ ++ +.+.+.+..  .|+...   +.+...+.+.++++..-
T Consensus       228 ~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          228 D--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             H--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred             H--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHH
Confidence            8  45778999999999999999884 44 455555543  444322   33455666677766543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.73  E-value=9.3e-13  Score=125.33  Aligned_cols=331  Identities=10%  Similarity=-0.032  Sum_probs=250.1

Q ss_pred             hHHHHHHHhhhccCCcChhhHHHHHHH-Hh----cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc----CCCh
Q 014502           54 QIKTTLDSVDIFAFNSSQFSWDALITS-LQ----SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNV  124 (423)
Q Consensus        54 ~~~~~~~~m~~~g~~p~~~~~~~li~~-~~----~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~  124 (423)
                      .+...+....+.|   +...+..|-.. ..    .+++++|.+.|    ++....+  +...+..|...|..    .+++
T Consensus        61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~----~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY----KKAALKG--LPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH----HHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH----HHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence            4455566555443   33444444444 34    67888888885    4443333  66777778888877    7899


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHH
Q 014502          125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVD  196 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~  196 (423)
                      ++|.+.|++..+.|   +...+..+...|..    .+++++|++.|++..+ .   .+...+..|...|..    .++.+
T Consensus       132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q---GNVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCCCcCHH
Confidence            99999999988875   67778888888877    7889999999998887 3   367778888888887    78999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 014502          197 AMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRV  268 (423)
Q Consensus       197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a  268 (423)
                      +|.++|++..+.|   +...+..+...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++.++|
T Consensus       205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A  278 (490)
T 2xm6_A          205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKA  278 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHH
Confidence            9999999888765   56677777777776    789999999999887764   34566666666766    7899999


Q ss_pred             HHHHHHHHhCCCccCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC---ChhHH
Q 014502          269 KSFLKFLLGGGWKINENMAQKLVKCYCEL-----GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD---RLDDV  340 (423)
Q Consensus       269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---~~~~a  340 (423)
                      ..++++..+.|   +...+..+...|...     +++++|...+++..+.+.   ...  +..+...|...|   +.++|
T Consensus       279 ~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a--~~~lg~~y~~~g~~~~~~~A  350 (490)
T 2xm6_A          279 LEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATA--QANLGAIYFRLGSEEEHKKA  350 (490)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHH--HHHHHHHHHhCCCcccHHHH
Confidence            99999988765   455677777888877     899999999999888642   222  566677777656   78899


Q ss_pred             HHHHHHHHhCCCCCCChHhHHHHHHHHhh----ccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHH
Q 014502          341 EYSVGRMGKQGLSFKSAEDVEMVICSYFR----CAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLD  411 (423)
Q Consensus       341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~  411 (423)
                      .+.|++..+.|    ++..+..+...|..    .++.+ +...+.+....+   ++..+..+...|.+    .++.++|.
T Consensus       351 ~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~  423 (490)
T 2xm6_A          351 VEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW  423 (490)
T ss_dssp             HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            99999988864    48888888888887    66664 677777777654   56778888888888    89999999


Q ss_pred             HHHHHHHhcC
Q 014502          412 SVINEMKFAE  421 (423)
Q Consensus       412 ~~~~~m~~~g  421 (423)
                      ..|++-.+.|
T Consensus       424 ~~~~~A~~~~  433 (490)
T 2xm6_A          424 AWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHCC
Confidence            9998876654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=7.2e-14  Score=134.39  Aligned_cols=368  Identities=11%  Similarity=0.017  Sum_probs=240.0

Q ss_pred             CccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHH
Q 014502           36 SVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYAC  113 (423)
Q Consensus        36 ~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~  113 (423)
                      +...|..++. +.+.+ ..++..+++.+.+. .+.+...|...+.. .+.|++++|..+    |++..... |+...|..
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~----~~ral~~~-p~~~lw~~   84 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKL----FQRCLMKV-LHIDLWKC   84 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHTTTC-CCHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcC-CChHHHHH
Confidence            3446666665 35555 55668899998753 23346678888888 688999999999    56666554 68778877


Q ss_pred             HHHHH-hcCCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCC
Q 014502          114 LIALS-GKVQNVPFAMH----VFTSMEAQ-GIKP-DSAVFNSLICACLC---------SGDVVTALSLFEIMVSSEEYKP  177 (423)
Q Consensus       114 l~~~~-~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~p  177 (423)
                      .+... ...|+++.|.+    +|++.... |..| +...|...+.....         .|+++.|..+|++..+ ....+
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~  163 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMIN  163 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTT
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhh
Confidence            77533 45677777665    77766543 5444 56788888887665         6899999999999986 21111


Q ss_pred             CHHhHHHHHHHH-------------HhcCCHHH-----------------------------------------------
Q 014502          178 NSKTYDAFISGF-------------SSLGNVDA-----------------------------------------------  197 (423)
Q Consensus       178 ~~~~~~~li~~~-------------~~~~~~~~-----------------------------------------------  197 (423)
                      ....|.......             .+.++++.                                               
T Consensus       164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~  243 (530)
T 2ooe_A          164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN  243 (530)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence            122332221110             01112222                                               


Q ss_pred             -------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHH
Q 014502          198 -------------MNKWYAANIAAGFSVNVQTYESLIHGSLK-------ARDFD-------SVDRFYEEMMSLGIIPSIP  250 (423)
Q Consensus       198 -------------a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~  250 (423)
                                   +..+|++..... +-+...|......+.+       .|+++       +|.++|++..+.-.+-+..
T Consensus       244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~  322 (530)
T 2ooe_A          244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML  322 (530)
T ss_dssp             SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred             CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence                         333444444332 1245556666665554       67876       7888888876522233467


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-H-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-E-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGII  328 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li  328 (423)
                      .|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|..+|++..+..  |..... |....
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~-~~~~a  397 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV-YVTAA  397 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH-HHHHH
Confidence            7888888888888888888888888874  343 2 477778888888888888888888887743  332111 22211


Q ss_pred             -HHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCC-Cccc--HHHHHHHHHHHHh
Q 014502          329 -RLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGS-YKLR--RATYDFLVAGYRR  403 (423)
Q Consensus       329 -~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~  403 (423)
                       ..+...|+.++|..+|++..+.  .|+++..|..++..+.+.|+.+ +...+.+.+... ..|+  ...|...+....+
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence             1233578888888888888773  3667888888888888888885 556666666542 2232  4467777888888


Q ss_pred             cCChhHHHHHHHHHHh
Q 014502          404 AGLSGKLDSVINEMKF  419 (423)
Q Consensus       404 ~g~~~~a~~~~~~m~~  419 (423)
                      .|+.+.+.++.+++.+
T Consensus       476 ~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          476 IGDLASILKVEKRRFT  491 (530)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8888888888877653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.73  E-value=1.2e-12  Score=124.51  Aligned_cols=318  Identities=11%  Similarity=0.005  Sum_probs=258.3

Q ss_pred             ChhhHHHHHHH-Hh----cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCC
Q 014502           70 SQFSWDALITS-LQ----SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIK  140 (423)
Q Consensus        70 ~~~~~~~li~~-~~----~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~  140 (423)
                      ++..+..+-.. ..    .+++++|.+.|    ++..+.  .+..++..|...|..    .+++++|.+.|++..+.|  
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~----~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWF----RRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHH----HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHH----HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence            44454444444 34    68999999995    444333  467788889999988    899999999999999875  


Q ss_pred             CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 014502          141 PDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSV  212 (423)
Q Consensus       141 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~  212 (423)
                       +...+..+...|..    .+++++|+..|++..+ .   -+...+..|...|..    .++.++|+++|++..+.|   
T Consensus       110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---  181 (490)
T 2xm6_A          110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-Q---GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---  181 (490)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence             77888888888988    8899999999999987 3   366778888888887    789999999999998875   


Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCH
Q 014502          213 NVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINE  284 (423)
Q Consensus       213 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~  284 (423)
                      +...+..+...|.+    .+++++|.+.|++..+.|   +...+..+...|..    .+++++|..++++..+.|   +.
T Consensus       182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  255 (490)
T 2xm6_A          182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS  255 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred             CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            67888888888988    899999999999998865   56677777777776    899999999999999875   45


Q ss_pred             HhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCC
Q 014502          285 NMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-----DRLDDVEYSVGRMGKQGLSFK  355 (423)
Q Consensus       285 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~  355 (423)
                      ..+..+...|..    .++.++|...|++..+.+.   ...  +..+...|...     ++.++|...|++..+.|    
T Consensus       256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~---~~a--~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----  326 (490)
T 2xm6_A          256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN---SDG--QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----  326 (490)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC---HHH--HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC---HHH--HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----
Confidence            667777788887    8999999999999987642   222  66677778777     89999999999998865    


Q ss_pred             ChHhHHHHHHHHhhcc---cc-chHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 014502          356 SAEDVEMVICSYFRCA---AY-DRLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       356 ~~~~~~~l~~~~~~~~---~~-~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g  421 (423)
                      ++..+..+...|...|   +. ++.+.+.+..+.   .++..+..+...|..    .+++++|.+.|++..+.|
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            3788888888888765   44 367777777765   367788899999998    899999999999987765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.70  E-value=6.7e-16  Score=139.95  Aligned_cols=276  Identities=13%  Similarity=0.113  Sum_probs=128.7

Q ss_pred             chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHH
Q 014502           52 VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHV  130 (423)
Q Consensus        52 ~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (423)
                      ..++.+.++.+      +++..|..+..+ ++.|++.+|.+.|    .+     .+|...|..++..+...|++++|+.+
T Consensus        19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsf----ik-----a~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY----IK-----ADDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHH----Hc-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            34556666665      233589999999 8999999999995    22     36888999999999999999999998


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014502          131 FTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF  210 (423)
Q Consensus       131 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  210 (423)
                      ++...+.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|..+...|...|.+++|..+|..+     
T Consensus        84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            8877764  4567889999999999999999988773        377789999999999999999999999977     


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502          211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL  290 (423)
Q Consensus       211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l  290 (423)
                          ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.   ..|+  -...+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHH
Confidence                37999999999999999999999988      378999999999999999999966554422   2333  35568


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC-----CChHhHHHH
Q 014502          291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS--DRLDDVEYSVGRMGKQGLSF-----KSAEDVEMV  363 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~-----~~~~~~~~l  363 (423)
                      +..|.+.|++++|..+++......  +.. ..+|+.|...|++-  ++..+.++.|..  .-++.|     .++..|..+
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le--~ah-~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~  288 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLE--RAH-MGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL  288 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTST--TCC-HHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCc--HHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999987643  332 22377777777655  334444444432  122333     346778888


Q ss_pred             HHHHhhccccc-hHH
Q 014502          364 ICSYFRCAAYD-RLD  377 (423)
Q Consensus       364 ~~~~~~~~~~~-~~~  377 (423)
                      ...|.+.++++ |+.
T Consensus       289 ~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          289 VFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHhhchHHHHHH
Confidence            88888888886 444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=6.7e-15  Score=127.19  Aligned_cols=225  Identities=10%  Similarity=0.036  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCCC----HHhHH
Q 014502          109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-EYKPN----SKTYD  183 (423)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~----~~~~~  183 (423)
                      ..|..+...+...|++++|...|++..+..  .+...|..+..++...|++++|.+.+++..+.. ...++    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            456666666667777777777777766655  466666777777777777777777776665411 00111    35666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR  263 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  263 (423)
                      .+...+...|++++|.+.|++..+..  |+.       ..+.+.|++++|.+.++++.... +.+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            66667777777777777777666642  332       23455566777777776666542 223445666666666777


Q ss_pred             CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH
Q 014502          264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS  343 (423)
Q Consensus       264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~  343 (423)
                      ++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+..  |+.... |..+...|...|++++|.+.
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRA-YIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHH-HHHHHHHHHHHhhHHHHHHH
Confidence            7777777777766643 2345666666777777777777777777766633  332221 66666677777777777777


Q ss_pred             HHHHHh
Q 014502          344 VGRMGK  349 (423)
Q Consensus       344 ~~~m~~  349 (423)
                      +++..+
T Consensus       230 ~~~a~~  235 (258)
T 3uq3_A          230 LDAART  235 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=2.1e-13  Score=129.07  Aligned_cols=343  Identities=11%  Similarity=0.009  Sum_probs=216.1

Q ss_pred             ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhC-----CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-----C
Q 014502           70 SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKG-----NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----G  138 (423)
Q Consensus        70 ~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g  138 (423)
                      ....||.+-.. ...|++++|++.|+..++-....     .+....+|+.+..+|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            34556666555 68899999999976655433322     1234678999999999999999999999887642     1


Q ss_pred             -CC-CCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 014502          139 -IK-PDSAVFNSLICACLCS--GDVVTALSLFEIMVSSEEYKPN-SKTYDAFISG---FSSLGNVDAMNKWYAANIAAGF  210 (423)
Q Consensus       139 -~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~  210 (423)
                       .. ....+++....++...  +++++|++.|++..+.   .|+ ...+..+..+   +...++.++|++.+++..+...
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence             11 1345666666666554  5789999999998873   354 3444444433   4456777888888888877653


Q ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHh
Q 014502          211 SVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENM  286 (423)
Q Consensus       211 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  286 (423)
                      . +..++..+...+..    .|++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus       207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  283 (472)
T 4g1t_A          207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL  283 (472)
T ss_dssp             S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence            3 56666666555544    467788999998887654 4556778888899999999999999999988753 334556


Q ss_pred             HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          287 AQKLVKCYCEL-------------------GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       287 ~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      +..+..+|...                   +..+.|...+++..+.+  |+.... +..+...|...|++++|++.|++.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRV-CSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCC-HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cchhhh-hhhHHHHHHHhccHHHHHHHHHHH
Confidence            66665555332                   23566777777776643  332222 777888899999999999999988


Q ss_pred             HhCCCCCCChH-hHHHHHH-HHhhccccc-hHHHHHHHHhCC-----------------------CcccHHHHHHHHHHH
Q 014502          348 GKQGLSFKSAE-DVEMVIC-SYFRCAAYD-RLDLFLDHIKGS-----------------------YKLRRATYDFLVAGY  401 (423)
Q Consensus       348 ~~~~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~-----------------------~~p~~~~~~~l~~~~  401 (423)
                      .+....+.+.. .+..+.. ...+.|+.+ ++..+.+.+.-.                       .+.++.+|..+..+|
T Consensus       361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~  440 (472)
T 4g1t_A          361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ  440 (472)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            87543211111 1222222 223445553 455555443321                       134578899999999


Q ss_pred             HhcCChhHHHHHHHHHHhcC
Q 014502          402 RRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       402 ~~~g~~~~a~~~~~~m~~~g  421 (423)
                      ...|++++|.+.|++-.+.|
T Consensus       441 ~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          441 ELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHCC-------------
T ss_pred             HHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999876643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=3.8e-14  Score=123.66  Aligned_cols=253  Identities=11%  Similarity=0.016  Sum_probs=185.0

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--HHhHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--SKTYDAF  185 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~l  185 (423)
                      ...+......+...|++++|...|++..+... .+...+..+..++...|++++|++.+++..+ .+-.|+  ...|..+
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            34556667788888999999999998887632 2455888888888999999999999998886 332222  2347788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ...+...|++++|++.|++..+.... +..+|..+...|...|++++|.+.|++..+.. +.+...+..+...+...+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence            88899999999999999988886533 66788888899999999999999998887653 34456666666344455699


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCch----HHHHHHHHHHHHHhcCCh
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR---VDELEEQLETLTKCN-QSPEV----LLHFFSGIIRLYALSDRL  337 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~~----~~~~~~~li~~~~~~g~~  337 (423)
                      ++|.+.++++.+.. +.+...+..+...+...|+   +++|...+++..+.. ..|+.    ...+|..+...|...|++
T Consensus       159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            99999999988753 3346677778888888888   777888888876532 11221    112377888889999999


Q ss_pred             hHHHHHHHHHHhCCCCCCChHhHHHHHHHH
Q 014502          338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSY  367 (423)
Q Consensus       338 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~  367 (423)
                      ++|.+.|++..+  +.|+++..+..+....
T Consensus       238 ~~A~~~~~~al~--~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          238 VKADAAWKNILA--LDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHHHH--HCTTCHHHHHHHC---
T ss_pred             HHHHHHHHHHHh--cCccHHHHHHHhhhhh
Confidence            999999999988  4466676666554433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.4e-14  Score=122.02  Aligned_cols=225  Identities=8%  Similarity=-0.031  Sum_probs=178.3

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS--VN----VQ  215 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~  215 (423)
                      ....|..+...+...|++++|+..|++..+ ..  .+..+|..+..++...|++++|.+.+++..+....  ++    ..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            356788889999999999999999999987 33  77788889999999999999999999988775321  12    57


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHH
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYC  295 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  295 (423)
                      +|..+...|.+.|++++|.+.|++..+.  .|+.       ..+...|++++|...++++.... +.+...+..+...+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence            8888889999999999999999988874  3553       34566788899999999988853 335567788888899


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-
Q 014502          296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-  374 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-  374 (423)
                      ..|++++|...++++.+..  |+... +|..+...|...|++++|...+++..+.  .|+++..+..+...+.+.|+.+ 
T Consensus       151 ~~~~~~~A~~~~~~a~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRA--PEDAR-GYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHC--TTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC--cccHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999988744  44322 2788888899999999999999998874  4566888888888888888885 


Q ss_pred             hHHHHHHHHh
Q 014502          375 RLDLFLDHIK  384 (423)
Q Consensus       375 ~~~~~~~~~~  384 (423)
                      +...+.+.+.
T Consensus       226 A~~~~~~a~~  235 (258)
T 3uq3_A          226 ALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666655554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=3.2e-14  Score=119.93  Aligned_cols=197  Identities=14%  Similarity=0.056  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      +...+..+...+...|++++|...|++..+.  -+.+...+..+...+.+.|++++|+..+++..+..+. +...+..+.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            4445555555555555555555555555431  1223444555555555555555555555555554322 444555555


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502          222 HGSLKA-----------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL  290 (423)
Q Consensus       222 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l  290 (423)
                      ..+.+.           |++++|+..|++..+.. +-+...+..+...+...|++++|...+++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            555555           56666666665555432 1234455555555556666666666666655544  455555555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      ..+|...|++++|...+++..+.  .|+.... +..+...+...|++++|...|++.
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~-~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQ--APKDLDL-RVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--STTCHHH-HHHHHHHHTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCChHH-HHHHHHHHHHccCHHHHHHHHHHH
Confidence            56666666666666666665552  2333222 455555556666666665555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.64  E-value=1.4e-12  Score=113.84  Aligned_cols=225  Identities=12%  Similarity=-0.030  Sum_probs=181.2

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHh
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKT  181 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~  181 (423)
                      .+..++..+...+...|++++|.+.|++..+.+   +...+..+...|..    .+++++|+..|++..+ .+   +...
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a   76 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNG   76 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHH
Confidence            356777888888888889999999998888743   56778888888888    8899999999988887 33   6777


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          182 YDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILE  253 (423)
Q Consensus       182 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~  253 (423)
                      +..+...|..    .+++++|++.|++..+.+   +...+..+...|.+    .+++++|++.|++..+.+   +...+.
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~  150 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence            8888888888    889999999998888765   67778888888888    899999999998888765   456677


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 014502          254 KVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFS  325 (423)
Q Consensus       254 ~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~  325 (423)
                      .+...|..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...+++..+.+  | ...  +.
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a--~~  222 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGG--CF  222 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHH--HH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHH--HH
Confidence            77777777    889999999999888764   45677778888888    889999999999888754  3 222  66


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHhCC
Q 014502          326 GIIRLYAL----SDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       326 ~li~~~~~----~g~~~~a~~~~~~m~~~~  351 (423)
                      .+...|..    .+++++|.+.|++..+.|
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            77778887    888999999998888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=4e-14  Score=119.28  Aligned_cols=199  Identities=12%  Similarity=0.005  Sum_probs=125.6

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      ++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..  +.+...+..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence            455566667777777777777777777766653 2256667777777777777777777777766521  2344566666


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          186 ISGFSSL-----------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK  254 (423)
Q Consensus       186 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  254 (423)
                      ...+.+.           |++++|++.|++..+..+. +...|..+...+...|++++|+..|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            6677777           7777777777777766433 56667777777777777777777777776655  56677777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      +...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            7777777777777777777777642 3355667777777777777777777776653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.64  E-value=1.3e-12  Score=125.70  Aligned_cols=339  Identities=9%  Similarity=0.048  Sum_probs=237.3

Q ss_pred             ChhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           70 SQFSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        70 ~~~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      +...|..++...+.|++++|..+    ++++....+.+...|...+..+.+.|++++|..+|++....  .|+...|...
T Consensus        12 ~~~~w~~l~~~~~~~~~~~a~~~----~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~   85 (530)
T 2ooe_A           12 DLDAWSILIREAQNQPIDKARKT----YERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY   85 (530)
T ss_dssp             CHHHHHHHHHHHHSSCHHHHHHH----HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence            57788888887788999999999    67787777778999999999999999999999999999986  4688888888


Q ss_pred             HHHH-HccCCHHHHHH----HHHHHHhcCCCCC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 014502          150 ICAC-LCSGDVVTALS----LFEIMVSSEEYKP-NSKTYDAFISGFSS---------LGNVDAMNKWYAANIAAGFSVNV  214 (423)
Q Consensus       150 i~~~-~~~g~~~~A~~----~~~~m~~~~~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~  214 (423)
                      +... ...|++++|.+    +|+......|..| +...|...+....+         .|+++.|.++|++..+.......
T Consensus        86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~  165 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE  165 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence            7533 45677777665    7777765445554 45677777776654         68899999999999873211112


Q ss_pred             HHHHHHHHHH-------------HhcCCHHHHHH----------------------------------------------
Q 014502          215 QTYESLIHGS-------------LKARDFDSVDR----------------------------------------------  235 (423)
Q Consensus       215 ~~~~~li~~~-------------~~~g~~~~a~~----------------------------------------------  235 (423)
                      ..|.......             .+.++++.|..                                              
T Consensus       166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~  245 (530)
T 2ooe_A          166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL  245 (530)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence            3333221100             01223333333                                              


Q ss_pred             --------------HHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCccCHHhH
Q 014502          236 --------------FYEEMMSLGIIPSIPILEKVLEGLCA-------RRKLD-------RVKSFLKFLLGGGWKINENMA  287 (423)
Q Consensus       236 --------------~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~~~~  287 (423)
                                    +|++..... +-+...|......+.+       .|+++       +|..++++..+.-.+.+...|
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~  324 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY  324 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence                          333333221 2234455555555554       68876       888999988863234467788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH-
Q 014502          288 QKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS-  366 (423)
Q Consensus       288 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~-  366 (423)
                      ..++..+.+.|++++|..+|+++.+.  .|+..+.+|...+..+.+.|++++|.++|++..+.  .|.+...+...... 
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence            88888899999999999999998884  45543223888888888899999999999998874  23334444332222 


Q ss_pred             Hhhccccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          367 YFRCAAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       367 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      +...|+.+ +...|.+.++. .+-++..|..++..+.+.|+.++|..+|++....
T Consensus       401 ~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            33567775 56666666653 2335788999999999999999999999988764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=2.7e-13  Score=116.86  Aligned_cols=197  Identities=10%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      |..+...+...|++++|.+.|+++.+.  .+.+...+..+...+...|++++|.+.++++.+.... +...+..+...|.
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~  116 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence            333444444444444444444444331  1223334444444444444444444444444433211 3344444444444


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE  304 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~  304 (423)
                      ..|++++|.+.|+++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence            44455555444444443222222 2334444444445555555555555444432 123444445555555555555555


Q ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          305 EQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       305 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..++.+.+..  |+.... +..+...+...|+.++|.+.++++.+
T Consensus       196 ~~~~~~~~~~--~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          196 QYYDLFAQGG--GQNARS-LLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHTTS--CCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--cCcHHH-HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5555554422  222111 44445555555555555555555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=3.5e-13  Score=116.12  Aligned_cols=201  Identities=11%  Similarity=0.040  Sum_probs=139.3

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.  .+.+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence            4556666777777777777777777776653 235667777777777777777777777777652  1335566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .+...|++++|.++++++.+.+..| +...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            7777777777777777776622233 45566677777777777777777777776643 334666777777777778888


Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      +|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus       193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8888887777653 345666777777777788888888888877764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=4.7e-13  Score=112.88  Aligned_cols=199  Identities=7%  Similarity=-0.053  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG  223 (423)
Q Consensus       144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  223 (423)
                      ..|..+...+...|++++|.+.|++..+.  .+.+...+..+...+...|++++|.+.+++..+... .+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~   85 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence            34444445555555555555555544431  122334444455555555555555555555444321 134445555555


Q ss_pred             HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          224 SLKA-RDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       224 ~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      +... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            5555 555555555555544222222 3344445555555555555555555554432 223445555555555555555


Q ss_pred             HHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          302 ELEEQLETLTKCNQSP-EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +|...++++.+..  | +.... +..+...+...|+.+++...++.+.+
T Consensus       165 ~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          165 DADYYFKKYQSRV--EVLQADD-LLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHH--CSCCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            5555555555432  2 11111 44445555555555555555555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=2.3e-14  Score=125.14  Aligned_cols=219  Identities=11%  Similarity=-0.049  Sum_probs=114.6

Q ss_pred             cCCHHHHHHHHHHHHHHHhhCCC----CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 014502           83 SSSPKKAQLVLEWRLDKMLKGNE----SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD  158 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  158 (423)
                      .+++++|+..|    +++.....    .+..++..+...+...|++++|...|++..+.. +.+..+|..+...+...|+
T Consensus        18 ~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           18 TLQQEVILARM----EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CHHHHHHHHHH----HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred             cchHHHHHHHH----HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence            35556666663    33333321    134556666666666666666666666665542 2245566666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          159 VVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYE  238 (423)
Q Consensus       159 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  238 (423)
                      +++|.+.|++..+.  .+.+..++..+..++.+.|++++|.+.|+++.+..  |+.......+..+...|++++|...++
T Consensus        93 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~  168 (275)
T 1xnf_A           93 FDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK  168 (275)
T ss_dssp             HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence            66666666666552  12234555566666666666666666666665542  333333333344445566666666665


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          239 EMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       239 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +..... +++...+. ++..+...++.++|...+++........   +..++..+...|.+.|++++|...+++..+
T Consensus       169 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          169 QHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             HHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            554432 22222222 4444555555556666655554432110   134455555555566666666666665555

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=6.8e-14  Score=119.75  Aligned_cols=196  Identities=13%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      |..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|.+.+++..+... .+..++..+...+.
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~  102 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV  102 (243)
T ss_dssp             ----------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence            333344444444444444444444331  122333444444444444444444444444443321 13344444444444


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            4444444444444444332 2233444444444444555555555555444431 2234445555555555555555555


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .++++.+..  |+... ++..+...|...|++++|.+.+++..+
T Consensus       181 ~~~~~~~~~--~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          181 QFAAVTEQD--PGHAD-AFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHC--TTCHH-HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhC--cccHH-HHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            555554432  22111 145555555555555555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=5.6e-13  Score=112.44  Aligned_cols=208  Identities=9%  Similarity=-0.070  Sum_probs=154.6

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +..++..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.  .+.+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence            56677778888888888888888888877653 235677888888888888888888888887762  234566777788


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          187 SGFSSL-GNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       187 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                      ..+... |++++|.+.++++.+.+..| +...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            888888 88888888888887732223 35677778888888888888888888877653 3346777888888888888


Q ss_pred             HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          265 LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       265 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      +++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..  |+..
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~  216 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCH
Confidence            88888888888775321456667777777788888888888888877633  5443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=2.6e-13  Score=123.86  Aligned_cols=251  Identities=10%  Similarity=0.020  Sum_probs=175.9

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      +..+|..+...+.+.|++++|++.|++..+... -+...|+.+..++...|+ +++|+..|++..+..  +-+...|..+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence            355677777777788888888888888777532 256677888888888886 888888888877621  3356677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA-RRK  264 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~  264 (423)
                      ..++...|++++|+..|++..+.... +...|..+..++.+.|++++|++.|+++.+.. +-+...|+.+...+.. .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence            78888888888888888888877544 67778888888888888888888888887754 3356677777777777 555


Q ss_pred             HHHH-----HHHHHHHHhCCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC--
Q 014502          265 LDRV-----KSFLKFLLGGGWKINENMAQKLVKCYCELG--RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD--  335 (423)
Q Consensus       265 ~~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--  335 (423)
                      .++|     ...+++.+... +-+...|..+...+.+.|  ++++|.+.+.++ +  ..|+.... +..+...|.+.|  
T Consensus       251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~a-l~~La~~~~~~~~~  325 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYL-IAFLVDIYEDMLEN  325 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHH-HHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHH-HHHHHHHHHHHhcc
Confidence            4666     46777777642 234667777777777777  577788777776 3  33444322 667777777764  


Q ss_pred             -------ChhHHHHHHHHH-HhCCCCCCChHhHHHHHHHHhh
Q 014502          336 -------RLDDVEYSVGRM-GKQGLSFKSAEDVEMVICSYFR  369 (423)
Q Consensus       336 -------~~~~a~~~~~~m-~~~~~~~~~~~~~~~l~~~~~~  369 (423)
                             ..++|.++++++ .+  +.|.....|..+...+..
T Consensus       326 ~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          326 QCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence                   247788888887 55  445556777666655554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=9.2e-13  Score=114.82  Aligned_cols=228  Identities=8%  Similarity=-0.055  Sum_probs=116.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCAR  262 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~  262 (423)
                      ....+...|++++|++.|++..+.... +...+..+...|...|++++|++.+++..+....|+  ...|..+...+...
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            334444455555555555554444221 233444444455555555555555555444221111  22344555555555


Q ss_pred             CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502          263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY  342 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~  342 (423)
                      |++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.  .|+.... |..+...+...+++++|.+
T Consensus        88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~-~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKV-FYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHH-HHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHH-HHHHHHHHHHHHHHHHHHH
Confidence            55555555555555432 223345555556666666666666666655553  2333221 3344412223346666666


Q ss_pred             HHHHHHhCCCCCCChHhHHHHHHHHhhccc---c-chHHHHHHHHhCC-Cccc------HHHHHHHHHHHHhcCChhHHH
Q 014502          343 SVGRMGKQGLSFKSAEDVEMVICSYFRCAA---Y-DRLDLFLDHIKGS-YKLR------RATYDFLVAGYRRAGLSGKLD  411 (423)
Q Consensus       343 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~  411 (423)
                      .|++..+  ..|.++..+..+...+...|+   . ++...+.+.+... -.|+      ...|..+...|.+.|++++|.
T Consensus       164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666655  234445555555555555554   3 2344444443221 1122      256777888888888888888


Q ss_pred             HHHHHHHh
Q 014502          412 SVINEMKF  419 (423)
Q Consensus       412 ~~~~~m~~  419 (423)
                      +.+++..+
T Consensus       242 ~~~~~al~  249 (272)
T 3u4t_A          242 AAWKNILA  249 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.59  E-value=1.7e-13  Score=117.28  Aligned_cols=203  Identities=10%  Similarity=0.022  Sum_probs=145.3

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      .....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.  .+.+..++..+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l   97 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA   97 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence            355667777888888888888888888887753 336778888888888888888888888888762  23456778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            8888888899999888888887653 367778888888888899999999888887653 34577788888888889999


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      ++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.+..
T Consensus       176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            99999998887753 3457788888888999999999999999888743

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=1.5e-13  Score=120.01  Aligned_cols=242  Identities=10%  Similarity=-0.059  Sum_probs=183.4

Q ss_pred             HhcCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502          118 SGKVQNVPFAMHVFTSMEAQGIK---PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN  194 (423)
Q Consensus       118 ~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~  194 (423)
                      +...|++++|...|+++.+....   .+..+|..+..++...|++++|...|++..+.  .+.+..+|..+...+...|+
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTC
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccC
Confidence            34568899999999999886421   24668889999999999999999999999873  23467889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                      +++|.+.|++..+.... +..++..+...|.+.|++++|.+.|+++.+..  |+.......+..+...|++++|...+++
T Consensus        93 ~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999887533 67889999999999999999999999998753  5544445555566777999999999988


Q ss_pred             HHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          275 LLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV---LLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       275 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                      ..... +++...+ .++..+...++.++|...++...+..  |..   ...+|..+...|...|++++|...|++..+. 
T Consensus       170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  244 (275)
T 1xnf_A          170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-  244 (275)
T ss_dssp             HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence            77653 3343344 36777788888889999998886633  321   1233788889999999999999999998874 


Q ss_pred             CCCCChHhHHHHHHHHhhcccc
Q 014502          352 LSFKSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       352 ~~~~~~~~~~~l~~~~~~~~~~  373 (423)
                       .|.+.   .....++...|+.
T Consensus       245 -~p~~~---~~~~~~~~~l~~~  262 (275)
T 1xnf_A          245 -NVHNF---VEHRYALLELSLL  262 (275)
T ss_dssp             -CCTTC---HHHHHHHHHHHHH
T ss_pred             -CchhH---HHHHHHHHHHHHH
Confidence             33332   2334445555555

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.58  E-value=1e-11  Score=108.35  Aligned_cols=223  Identities=8%  Similarity=-0.003  Sum_probs=179.1

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTY  217 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~  217 (423)
                      ++.++..+...+...|++++|++.|++..+    +-+...+..+...|..    .+++++|.++|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            667888888889999999999999998887    2455677778888888    899999999999988875   67788


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHH
Q 014502          218 ESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQK  289 (423)
Q Consensus       218 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~  289 (423)
                      ..+...|..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            888888888    899999999999888765   67788888888888    899999999999988865   5567777


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCChHhHH
Q 014502          290 LVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL----SDRLDDVEYSVGRMGKQGLSFKSAEDVE  361 (423)
Q Consensus       290 li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~  361 (423)
                      +...|..    .+++++|...+++..+.+.   ...  +..+...|..    .+++++|...|++..+.+    ++..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~  222 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLKD---SPG--CFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCF  222 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHH--HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHH
Confidence            8888887    8899999999998887541   223  6677888888    889999999998888754    277777


Q ss_pred             HHHHHHhh----ccccc-hHHHHHHHHhCC
Q 014502          362 MVICSYFR----CAAYD-RLDLFLDHIKGS  386 (423)
Q Consensus       362 ~l~~~~~~----~~~~~-~~~~~~~~~~~~  386 (423)
                      .+...|..    .++.+ +.+.+.+.++.+
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            78888877    77774 566666666543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.58  E-value=7.8e-12  Score=118.20  Aligned_cols=352  Identities=8%  Similarity=-0.121  Sum_probs=224.0

Q ss_pred             ccccHHHHHHHhcCCc-hhHHHHHHHhhh----c---cCCc-ChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCC-
Q 014502           37 VSSSNPLISRLLQVPV-SQIKTTLDSVDI----F---AFNS-SQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNE-  105 (423)
Q Consensus        37 ~~~~~~ll~~l~~~~~-~~~~~~~~~m~~----~---g~~p-~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~-  105 (423)
                      ...||.+-......|. .++.+.+.+..+    .   -..| ...+|+.+-.. ...|++++|...++...+-...... 
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            3467766556666664 445555554422    1   1123 35678777777 6899999999997654443322221 


Q ss_pred             ---CCHhHHHHHHHHHhc--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHhcCCCCC
Q 014502          106 ---SCLDEYACLIALSGK--VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA---CLCSGDVVTALSLFEIMVSSEEYKP  177 (423)
Q Consensus       106 ---~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p  177 (423)
                         ....++..+..++.+  .+++++|...|++..+... -++..+..+..+   +...++.++|++.+++..+..  +.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~  207 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PD  207 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SS
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Cc
Confidence               235667666555544  4579999999999988632 245555555544   445678889999999887621  33


Q ss_pred             CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          178 NSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE  253 (423)
Q Consensus       178 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  253 (423)
                      +..++..+...+..    .+++++|.+++++...... .+..++..+...|.+.|++++|.+.|++..+.. +-+..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence            45566656555544    4567899999999887753 377889999999999999999999999988754 23455666


Q ss_pred             HHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          254 KVLEGLCAR-------------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       254 ~li~~~~~~-------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      .+...|...                   +..+.|...+++..+.. +.+..++..+...|...|++++|...|++..+..
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            665554322                   23567777888777653 3345678889999999999999999999998865


Q ss_pred             CCCchHHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCC----------------------CCCCChHhHHHHHHHHhhcc
Q 014502          315 QSPEVLLHFFSGIIR-LYALSDRLDDVEYSVGRMGKQG----------------------LSFKSAEDVEMVICSYFRCA  371 (423)
Q Consensus       315 ~~p~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~----------------------~~~~~~~~~~~l~~~~~~~~  371 (423)
                      ..+.....++..+.. .+...|+.++|+..|++..+..                      ..|+++.+|..+...|...|
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g  444 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE  444 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            544433222333322 2356789999999888776532                      23667889999999999999


Q ss_pred             ccc-hHHHHHHHHhCC-CcccHHHH
Q 014502          372 AYD-RLDLFLDHIKGS-YKLRRATY  394 (423)
Q Consensus       372 ~~~-~~~~~~~~~~~~-~~p~~~~~  394 (423)
                      +.+ |.+.|.+.++.+ ..|+..+|
T Consensus       445 ~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          445 KMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HCC----------------------
T ss_pred             CHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            995 788888777654 23444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=1.3e-12  Score=119.25  Aligned_cols=247  Identities=13%  Similarity=0.029  Sum_probs=200.7

Q ss_pred             hhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502           72 FSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAVFNSL  149 (423)
Q Consensus        72 ~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l  149 (423)
                      ..|+.+-.. ...|++++|++.    +++.....+.+..+|+.+..++...|+ +++|+..|++..+.... +...|+.+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~----~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~  172 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKL----TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHH----HHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence            344444444 578999999999    567777777889999999999999997 99999999999987433 77899999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLK-AR  228 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g  228 (423)
                      ..++...|++++|+..|+++.+..  +-+...|..+..++.+.|++++|++.|+++.+.... +...|+.+...+.+ .|
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence            999999999999999999998732  446788999999999999999999999999998654 78999999999999 66


Q ss_pred             CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC---
Q 014502          229 DFDSV-----DRFYEEMMSLGIIPSIPILEKVLEGLCARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG---  298 (423)
Q Consensus       229 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---  298 (423)
                      ..++|     ++.|++..+.. +-+...|..+...+...|  ++++|.+.+.++ +. .+.+...+..+..+|.+.|   
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~  326 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ  326 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence            65777     48888887754 334678888888888888  689999999988 43 3456778889999998874   


Q ss_pred             ------CHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHH
Q 014502          299 ------RVDELEEQLETL-TKCNQSPEVLLHFFSGIIRLYA  332 (423)
Q Consensus       299 ------~~~~a~~~~~~~-~~~~~~p~~~~~~~~~li~~~~  332 (423)
                            ..++|..+++++ .+  ..|..... |..+...+.
T Consensus       327 ~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~-w~~~~~~l~  364 (382)
T 2h6f_A          327 CDNKEDILNKALELCEILAKE--KDTIRKEY-WRYIGRSLQ  364 (382)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHT--TCGGGHHH-HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHH--hCchhHHH-HHHHHHHHH
Confidence                  258999999998 66  45765543 666655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.57  E-value=8e-12  Score=126.46  Aligned_cols=253  Identities=10%  Similarity=0.124  Sum_probs=192.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502          113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL  192 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  192 (423)
                      .+...+...|.+++|..+|++...     .....+.++.   ..+++++|.++.++..       +..+|..+..++.+.
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhC
Confidence            356677778888888888877531     2233344433   5677888888877552       356788899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          193 GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFL  272 (423)
Q Consensus       193 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  272 (423)
                      |++++|+..|.+.      -|...|..++.+|.+.|++++|.++|....+..  ++....+.++.+|++.+++++...+.
T Consensus      1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence            9999999998663      377788889999999999999999998776654  33333445888899998888644442


Q ss_pred             HHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          273 KFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       273 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                          +   .++...+..+...|...|++++|..+|..+.         .  |..+...|.+.|++++|.+.+++..    
T Consensus      1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------n--y~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A         1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------N--FGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred             ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------H--HHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence                2   3455667778899999999999999999863         2  8999999999999999999998762    


Q ss_pred             CCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          353 SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                         ++.+|..+..+|...|+++.+......    +..++..+..++..|.+.|.+++|+.+++.-
T Consensus      1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A         1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred             ---CHHHHHHHHHHHhhhhHHHHHHHHHHh----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               388999999999988887644443321    3456777889999999999999999998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.55  E-value=1.5e-11  Score=124.51  Aligned_cols=265  Identities=9%  Similarity=0.062  Sum_probs=156.1

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +..+|..+..++...|++++|.+.|.+.      -|...|..++.++.+.|++++|.+.|...++ .  .++....+.++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~La 1174 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELI 1174 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHH
Confidence            3445555555555555555555555332      1455555555555555555555555554443 1  12222222355


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .+|++.+++++...+.    .   .++...|..+...|...|++++|..+|...         ..|..+...+.+.|+++
T Consensus      1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A         1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred             HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence            5555555555322221    1   234444555555555566666666655552         25555566666666666


Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR  346 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~  346 (423)
                      +|.+.+++.      .+..+|..+..+|...|++..|......+.   ..|+  .  +..++..|.+.|.+++|+.+++.
T Consensus      1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii---v~~d--e--Leeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--E--LEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh---cCHH--H--HHHHHHHHHHcCCHHHHHHHHHH
Confidence            666555544      233555555555555666555555444321   1222  2  67889999999999999999988


Q ss_pred             HHhCCCCCCChHhHHHHHHHHhhccc--c-chHHHHHHHHhCCCcc------cHHHHHHHHHHHHhcCChhHHHHH
Q 014502          347 MGKQGLSFKSAEDVEMVICSYFRCAA--Y-DRLDLFLDHIKGSYKL------RRATYDFLVAGYRRAGLSGKLDSV  413 (423)
Q Consensus       347 m~~~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~  413 (423)
                      ...  ..+.+...|+-+...|++..-  . |.++.|.....  ++|      +...|.-++-.|.+.|+++.|...
T Consensus      1306 aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1306 ALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             Hhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            765  556678888888888887642  2 45666665433  222      467899999999999999999843

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.54  E-value=4.3e-13  Score=123.96  Aligned_cols=289  Identities=9%  Similarity=-0.036  Sum_probs=210.5

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCC----HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLIC  151 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~  151 (423)
                      ...|++++|...|+    +.....+.+    ..++..+...+...|++++|...|++....    +-.| ...++..+..
T Consensus        20 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           20 CKSGDCRAGVSFFE----AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHTTCHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHH----HHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            68999999999954    444444444    467889999999999999999999886542    2122 2457888899


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMNKWYAANIA  207 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~  207 (423)
                      .|...|++++|...+++..+...-.++    ..++..+...+...|+                    +++|.+.+++...
T Consensus        96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  175 (406)
T 3sf4_A           96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS  175 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999887652111122    3478888899999999                    9999999887654


Q ss_pred             C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          208 A----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       208 ~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .    +..| ...++..+...|...|++++|.+.+++..+... .++    ..++..+...+...|++++|...+++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            2    1111 245678888999999999999999988764210 122    23688888899999999999999998865


Q ss_pred             C----CCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          278 G----GWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       278 ~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .    +..+. ..++..+...|...|++++|...+++..+...   .+.....++..+...|...|++++|.+.+++..+
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3    11111 45778889999999999999999998765211   1112223378889999999999999999988765


Q ss_pred             C----CCCCCChHhHHHHHHHHhhcccc
Q 014502          350 Q----GLSFKSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       350 ~----~~~~~~~~~~~~l~~~~~~~~~~  373 (423)
                      .    +..+....++..+...+...|+.
T Consensus       336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          336 ISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            2    22222345566777778777766

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=1.3e-11  Score=109.82  Aligned_cols=217  Identities=6%  Similarity=0.015  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHh-------cCCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502           87 KKAQLVLEWRLDKMLKGNESCLDEYACLIALSG-------KVQNV-------PFAMHVFTSMEAQGIKPDSAVFNSLICA  152 (423)
Q Consensus        87 ~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~  152 (423)
                      ++|..+    |++.....+.+...|..++..+.       +.|++       ++|..+|++..+.-.+-+...|..++..
T Consensus        33 ~~a~~~----~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~  108 (308)
T 2ond_A           33 KRVMFA----YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            455555    44444445556666766666654       24664       6677777666652112244566666666


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCC-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPN-SK-TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL-KARD  229 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~  229 (423)
                      +...|++++|.++|++..+   +.|+ .. .|..+...+.+.|++++|.++|++..+... .+...|........ ..|+
T Consensus       109 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~  184 (308)
T 2ond_A          109 EESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred             HHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence            6666777777777776665   2343 22 566666666666666666666666665432 23333332222211 2466


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-Ccc--CHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          230 FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-WKI--NENMAQKLVKCYCELGRVDELEEQ  306 (423)
Q Consensus       230 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~  306 (423)
                      +++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... ++|  ....|..++..+.+.|+.+.|..+
T Consensus       185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666655432 2234555555666666666666666666666542 233  244555555666666666666666


Q ss_pred             HHHHHh
Q 014502          307 LETLTK  312 (423)
Q Consensus       307 ~~~~~~  312 (423)
                      ++.+.+
T Consensus       264 ~~~a~~  269 (308)
T 2ond_A          264 EKRRFT  269 (308)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=1.5e-11  Score=109.51  Aligned_cols=220  Identities=10%  Similarity=0.022  Sum_probs=176.6

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHhcCCCCC-CHHhHHHHHHHH
Q 014502          125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------SGDV-------VTALSLFEIMVSSEEYKP-NSKTYDAFISGF  189 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~  189 (423)
                      ++|..+|++..... +-++..|..++..+..       .|++       ++|..+|++..+  .+.| +...|..+...+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHH
Confidence            67889999988753 3477889888887763       5886       899999999986  2345 456899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC-ARRKLDR  267 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~  267 (423)
                      .+.|++++|.++|++..+.... +.. .|..+...+.+.|++++|.++|++..+.. +++...|........ ..|++++
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999985322 333 89999999999999999999999998764 334445544433322 3699999


Q ss_pred             HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR  346 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~  346 (423)
                      |.++|++..+. .+.+...|..++..+.+.|++++|..+|++..... ..|+....+|..++..+...|+.++|..++++
T Consensus       188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999875 23467889999999999999999999999999863 45653444489999999999999999999999


Q ss_pred             HHhC
Q 014502          347 MGKQ  350 (423)
Q Consensus       347 m~~~  350 (423)
                      +.+.
T Consensus       267 a~~~  270 (308)
T 2ond_A          267 RFTA  270 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.51  E-value=1.1e-12  Score=121.56  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=140.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCC-CCCHHhH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDS----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEY-KPNSKTY  182 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~~~  182 (423)
                      +..+...+...|++++|...|++..+.+.. +.    ..|..+...|...|++++|...+++..+.   .+- +....++
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            444555566666666666666666654221 22    35666666666667777776666655431   010 1123456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 014502          183 DAFISGFSSLGNVDAMNKWYAANIAA----G-FSVNVQTYESLIHGSLKARD-----------------FDSVDRFYEEM  240 (423)
Q Consensus       183 ~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m  240 (423)
                      ..+...|...|++++|.+.+++..+.    + ......++..+...|...|+                 +++|.+.+++.
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            66666777777777777777665543    1 01123456666677777777                 77777776665


Q ss_pred             HHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC----HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          241 MSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-IN----ENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       241 ~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      .+.    +..+ ...++..+...+...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++.
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            331    1111 1235666667777777777777777776553110 11    225666777788888888888887776


Q ss_pred             HhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          311 TKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       311 ~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+...   .+.....++..+...|...|++++|...+++..+
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            54211   1111122366777778888888888888777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.51  E-value=1.7e-12  Score=116.30  Aligned_cols=266  Identities=9%  Similarity=-0.010  Sum_probs=188.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCC----HhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESC----LDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLIC  151 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~  151 (423)
                      ...|++++|...|+    +.....+.+    ..++..+...+...|++++|.+.+++..+.    +-.| ...++..+..
T Consensus        16 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           16 CKSGDCRAGVSFFE----AAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHTTCHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHH----HHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            58899999999954    444444434    467888899999999999999999886542    2111 2457888888


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGN--------------------VDAMNKWYAANIA  207 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~  207 (423)
                      .+...|++++|...+++..+...-.++    ..++..+...+...|+                    +++|.+.+++...
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999998886542111122    3377788888888898                    8888888887654


Q ss_pred             C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          208 A----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       208 ~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .    +..+ ...++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...+++..+
T Consensus       172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2    1111 2446777888889999999999998887542    1111 123677788888889999999999888765


Q ss_pred             CC----Ccc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          278 GG----WKI-NENMAQKLVKCYCELGRVDELEEQLETLTKCN---QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       278 ~g----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..    ..+ ...++..+...|...|++++|...+++..+..   ..+.....++..+...|...|++++|...+++..+
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            31    111 14567778888889999999999888876521   11222222377788888999999999999988876


Q ss_pred             C
Q 014502          350 Q  350 (423)
Q Consensus       350 ~  350 (423)
                      .
T Consensus       332 ~  332 (338)
T 3ro2_A          332 I  332 (338)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=2.3e-12  Score=119.04  Aligned_cols=304  Identities=14%  Similarity=0.013  Sum_probs=200.5

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCC-
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKP-  177 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p-  177 (423)
                      +....+......+...|++++|...|++..+.+.. +    ..+|..+...+...|++++|...+++....   .+-.| 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            45566777888888999999999999998876322 3    357888888899999999999998886541   11122 


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHH
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVN----VQTYESLIHGSLKARD--------------------FDS  232 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~  232 (423)
                      ...++..+...+...|++++|...+++..+... .++    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            244677788888899999999999887765311 011    4477778888888888                    888


Q ss_pred             HHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-ccC----HHhHHHHHHHHHhcCCHHH
Q 014502          233 VDRFYEEMMS----LGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGW-KIN----ENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       233 a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~  302 (423)
                      |.+.+++..+    .+..|. ..++..+...+...|++++|...+++..+... .++    ..++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            8888877643    221121 24577777788888888888888888765311 011    2367777788888888888


Q ss_pred             HHHHHHHHHhCCCCC---chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCChHhHHHHHHHHhhccccc-
Q 014502          303 LEEQLETLTKCNQSP---EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL----SFKSAEDVEMVICSYFRCAAYD-  374 (423)
Q Consensus       303 a~~~~~~~~~~~~~p---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~l~~~~~~~~~~~-  374 (423)
                      |...+++..+.....   .....++..+...|...|++++|...+++..+...    .+..+..+..+...|...|+.+ 
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            888888887732111   11122367778888888888888888887765311    1111345566677777777774 


Q ss_pred             hHHHHHHHHhCCCccc-----HHHHHHHHHHHHhcCChhHH
Q 014502          375 RLDLFLDHIKGSYKLR-----RATYDFLVAGYRRAGLSGKL  410 (423)
Q Consensus       375 ~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a  410 (423)
                      +...+.+.+...-...     ..++..+...+...|+....
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence            4555555554322222     23455555556555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=1.4e-12  Score=120.89  Aligned_cols=266  Identities=9%  Similarity=-0.034  Sum_probs=201.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCH----hHHHHHHHHHhcCCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCL----DEYACLIALSGKVQNVPFAMHVFTSMEAQ----GI-KPDSAVFNSLIC  151 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~  151 (423)
                      ...|++++|...|    ++.....+.+.    .+|..+...|...|++++|...|++..+.    +- +.....+..+..
T Consensus        59 ~~~g~~~~A~~~~----~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           59 CNAGDCRAGVAFF----QAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHTTCHHHHHHHH----HHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHH----HHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            6899999999995    44444444444    57889999999999999999999987653    11 223467888999


Q ss_pred             HHHccCCHHHHHHHHHHHHhcC---C-CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC--
Q 014502          152 ACLCSGDVVTALSLFEIMVSSE---E-YKPNSKTYDAFISGFSSLGN-----------------VDAMNKWYAANIAA--  208 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~---~-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~--  208 (423)
                      .|...|++++|...+++..+..   + .+....++..+...|...|+                 +++|++.+++..+.  
T Consensus       135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  214 (411)
T 4a1s_A          135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR  214 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876521   1 11224578888899999999                 99999999876542  


Q ss_pred             --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          209 --GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGGGW  280 (423)
Q Consensus       209 --~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~  280 (423)
                        +-.+ ...++..+...|...|++++|.+.+++..+... .++    ...+..+...+...|++++|...+++..+...
T Consensus       215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  294 (411)
T 4a1s_A          215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV  294 (411)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence              1111 235788888999999999999999998865210 112    23688888999999999999999998875321


Q ss_pred             c-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 014502          281 K-----INENMAQKLVKCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       281 ~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      .     ....++..+...|...|++++|...+++..+...   .+.....++..+...|...|++++|.+.+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1     1245778889999999999999999998765211   11122223788999999999999999999998874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=1.6e-12  Score=115.54  Aligned_cols=237  Identities=11%  Similarity=0.041  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAA-------GFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSL------GIIP  247 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p  247 (423)
                      ++..+...+...|++++|..+++++.+.       .......++..+...|...|++++|...+++..+.      +-.|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            3444444444445555544444444431       11112334444445555555555555555444331      1111


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 014502          248 -SIPILEKVLEGLCARRKLDRVKSFLKFLLGG------GW-KINENMAQKLVKCYCELGRVDELEEQLETLTKC------  313 (423)
Q Consensus       248 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------  313 (423)
                       ...++..+...+...|++++|...++++.+.      +. +....++..+...|...|++++|...++++.+.      
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence             1234455555555555555555555555432      11 122335556666666677777777776666553      


Q ss_pred             CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCChHhHHHH------HHHHhhccccc-hHHHH
Q 014502          314 NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ-------GLSFKSAEDVEMV------ICSYFRCAAYD-RLDLF  379 (423)
Q Consensus       314 ~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~l------~~~~~~~~~~~-~~~~~  379 (423)
                      +..|... .++..+...|...|++++|.+.+++..+.       ...+.....+..+      ...+...+... +...+
T Consensus       189 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  267 (311)
T 3nf1_A          189 PDDPNVA-KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY  267 (311)
T ss_dssp             TTCHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred             CCCHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence            1122222 22666777777777777777777776642       1111112222222      22222223332 22333


Q ss_pred             HHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          380 LDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       380 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ..... ..+.+..++..+..+|.+.|++++|.+++++..+
T Consensus       268 ~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          268 KACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33222 2234577899999999999999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.48  E-value=3.5e-12  Score=114.35  Aligned_cols=278  Identities=14%  Similarity=0.051  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCC-CHHh
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKP-NSKT  181 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p-~~~~  181 (423)
                      .+......+...|++++|...|++..+.... +    ...+..+...+...|++++|.+.+++..+.   .+..| ...+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3444455566666677777666666654211 2    245566666666666666666666665431   01011 1334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAGF-SVN----VQTYESLIHGSLKARD--------------------FDSVDRF  236 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~  236 (423)
                      +..+...+...|++++|.+.+++..+... .++    ..++..+...|...|+                    +++|.+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            55555666666666666666665443210 011    2245555555555555                    5555555


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 014502          237 YEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDELEEQLETLTKCN-  314 (423)
Q Consensus       237 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-  314 (423)
                      +++..+..                               ...+.. ....++..+...+...|++++|...+++..+.. 
T Consensus       166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            54432210                               000000 011233444444444455555544444433210 


Q ss_pred             --CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhC--
Q 014502          315 --QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG----LSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKG--  385 (423)
Q Consensus       315 --~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~--  385 (423)
                        ..+.....++..+...|...|++++|...+++..+..    ..+.....+..+...+...|+.+ +...+.+.+..  
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              0011111124444555555555555555555443211    00001233344455555555553 33333333221  


Q ss_pred             --CCc-ccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          386 --SYK-LRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       386 --~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                        +.. ....++..+...|.+.|++++|...+++..+
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence              111 1245778889999999999999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=4.1e-12  Score=120.06  Aligned_cols=206  Identities=10%  Similarity=-0.032  Sum_probs=142.1

Q ss_pred             HHHHhhCCCCCHhHHHHHHHHHhcCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 014502           97 LDKMLKGNESCLDEYACLIALSGKVQNV-PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEY  175 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  175 (423)
                      ++........+...+..+...+...|++ ++|.+.|++..+.. +-+...|..+..+|...|++++|.+.|++..+   .
T Consensus        91 l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~  166 (474)
T 4abn_A           91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---H  166 (474)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---T
T ss_pred             HHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---h
Confidence            4444444445677777777888888888 88888887777653 22466777778888888888888888887776   2


Q ss_pred             CCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHH
Q 014502          176 KPNSKTYDAFISGFSSL---------GNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA--------RDFDSVDRFYE  238 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~  238 (423)
                      .|+...+..+...+...         |++++|++.|++..+.... +...|..+..+|...        |++++|++.|+
T Consensus       167 ~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~  245 (474)
T 4abn_A          167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA  245 (474)
T ss_dssp             CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            46667777777777777         7777888877777776433 566777777777777        77777777777


Q ss_pred             HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          239 EMMSLGII---PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLET  309 (423)
Q Consensus       239 ~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  309 (423)
                      +..+.. +   -+...|..+...|...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+.+
T Consensus       246 ~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          246 QAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            776642 1   256667777777777777777777777776643 23455666666677777777666654443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=8.7e-13  Score=117.18  Aligned_cols=240  Identities=10%  Similarity=0.055  Sum_probs=128.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-----C
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-------GIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSE-----E  174 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~  174 (423)
                      +..++..+...+...|++++|..+|+++.+.       ..+....++..+...|...|++++|...+++..+..     +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3455666666666666666666666666552       112234456666666666777777766666655410     1


Q ss_pred             C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 014502          175 Y-KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL---  243 (423)
Q Consensus       175 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  243 (423)
                      - +....++..+...+...|++++|.+.+++..+.      +-.| ....+..+...|...|++++|.+.|++..+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 122345666666677777777777777666543      1111 3445666666777777777777777666542   


Q ss_pred             ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCccCH-------HhHHHHHHHHHhcCCHHHHHH
Q 014502          244 ---GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG-------GWKINE-------NMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       244 ---~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~-------~~~~~li~~~~~~g~~~~a~~  305 (423)
                         +..|+ ..++..+...+...|++++|.+.++++.+.       ...+..       ..+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               11222 335666666777777777777777776642       111111       122222333334445555555


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          306 QLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       306 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .++.....  .|... .++..+...|...|++++|.+.|++..+
T Consensus       266 ~~~~~~~~--~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          266 WYKACKVD--SPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCC--CchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555442  23322 2377778888888888888888877665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.47  E-value=1.7e-11  Score=100.13  Aligned_cols=165  Identities=13%  Similarity=0.015  Sum_probs=71.4

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      +.+|..+...|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|++++|...+......  .+.+...+..+..
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            33444444444444555555555544444321 13344444444444444444444444444431  1122333333444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      .+...++++.|.+.+.+....... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            444444444444444444443211 33444444444444444444444444444322 1223344444444444444444


Q ss_pred             HHHHHHHHHh
Q 014502          268 VKSFLKFLLG  277 (423)
Q Consensus       268 a~~~~~~~~~  277 (423)
                      |.+.|++.++
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=1.5e-11  Score=100.39  Aligned_cols=165  Identities=14%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014502          179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG  258 (423)
Q Consensus       179 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  258 (423)
                      ...|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|...++...... +.+...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            334444444444444444444444444443322 34444444444444444444444444443322 1223334444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChh
Q 014502          259 LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLD  338 (423)
Q Consensus       259 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~  338 (423)
                      +...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+.  .|+.... |..+...|...|+++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~-~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRA-YQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhH-HHHHHHHHHHCCCHH
Confidence            444444554444444444431 223344444444555555555555555554442  2322211 444455555555555


Q ss_pred             HHHHHHHHHHh
Q 014502          339 DVEYSVGRMGK  349 (423)
Q Consensus       339 ~a~~~~~~m~~  349 (423)
                      +|.+.|++..+
T Consensus       159 ~A~~~~~~al~  169 (184)
T 3vtx_A          159 EAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            55555555444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=4.4e-11  Score=109.91  Aligned_cols=161  Identities=8%  Similarity=0.031  Sum_probs=67.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHH
Q 014502          151 CACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GF----SVNVQTYESL  220 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~----~~~~~~~~~l  220 (423)
                      ..+...|++++|...|++..+...-.++    ..++..+...|...|++++|.+.+.+..+.  ..    .....+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3344445555555555544331000111    234444444555555555555554444332  00    0012344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-ccCHHhHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG----GW-KINENMAQKL  290 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~~l  290 (423)
                      ...|...|++++|.+.|++..+.    +-.+. ..++..+...|...|++++|.+.+++..+.    +. +....++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            44555555555555554444321    10000 123444444455555555555555544431    11 2223344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 014502          291 VKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~  311 (423)
                      ...|.+.|++++|...+++..
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=9.9e-12  Score=117.44  Aligned_cols=215  Identities=11%  Similarity=-0.002  Sum_probs=169.9

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 014502          123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDV-VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKW  201 (423)
Q Consensus       123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  201 (423)
                      +++++.+.+++..... +.+...+..+..++...|++ ++|++.|++..+..  +.+...|..+..+|.+.|++++|.+.
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3566777777766542 33778888899999999999 99999999887632  33477888899999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CC
Q 014502          202 YAANIAAGFSVNVQTYESLIHGSLKA---------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--------RK  264 (423)
Q Consensus       202 ~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~  264 (423)
                      |++..+.  .|+...+..+...|...         |++++|++.|++..+.. +-+...|..+..+|...        |+
T Consensus       160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            9998876  46678888888888888         99999999999887754 34577888888888888        88


Q ss_pred             HHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHH
Q 014502          265 LDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEY  342 (423)
Q Consensus       265 ~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~  342 (423)
                      +++|.+.+++..+....  .+...|..+..+|...|++++|.+.|++..+..  |+.... +..+...+...|++++|.+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a-~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEP-QQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999998885310  377788888899999999999999999888743  554432 7778888888888888887


Q ss_pred             HHHH
Q 014502          343 SVGR  346 (423)
Q Consensus       343 ~~~~  346 (423)
                      .+.+
T Consensus       314 ~~~~  317 (474)
T 4abn_A          314 SKGK  317 (474)
T ss_dssp             HTTT
T ss_pred             Hhcc
Confidence            5543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.42  E-value=1e-10  Score=107.41  Aligned_cols=231  Identities=5%  Similarity=-0.068  Sum_probs=165.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI---IP-SIPILE  253 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~---~p-~~~~~~  253 (423)
                      ....+...|++++|.+.|++..+.    +-.+ ...+|..+...|...|++++|.+.+++..+.  ..   .+ ...++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            556778899999999999998764    1111 3467888889999999999999999887642  11   11 135688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCchHHHHH
Q 014502          254 KVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKC----NQSPEVLLHFF  324 (423)
Q Consensus       254 ~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~  324 (423)
                      .+...|...|++++|...+++..+.    +..+ ...++..+..+|...|++++|...+++..+.    +..|.. ..++
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~  267 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY  267 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence            8888899999999999999988753    1111 1247788899999999999999999987762    222433 3338


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCChHhHHHHHHHHhhcccc---c-hHHHHHHHHhCCCccc-HHHHHH
Q 014502          325 SGIIRLYALSDRLDDVEYSVGRMGKQGL---SFKSAEDVEMVICSYFRCAAY---D-RLDLFLDHIKGSYKLR-RATYDF  396 (423)
Q Consensus       325 ~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~~~~~p~-~~~~~~  396 (423)
                      ..+...|...|++++|...+++..+...   .+.....+..+...+...|+.   + +...+.+.   +..|+ ...+..
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~  344 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence            8899999999999999999988765321   111233356778888888873   2 33333332   33333 556788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 014502          397 LVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      +...|.+.|++++|...+++..+
T Consensus       345 la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999988754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.37  E-value=1.6e-09  Score=99.02  Aligned_cols=272  Identities=12%  Similarity=0.001  Sum_probs=168.4

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHH
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSA----VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYD  183 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~  183 (423)
                      ......+...|++++|...+++........+..    .++.+...+...|++++|.+.+++......-.++.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334445566788888888887776643222222    45566667777888888888887765411001121    2355


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAA----GFS--V-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII--P--SIPIL  252 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~  252 (423)
                      .+...+...|++++|.+.+++..+.    +..  | ....+..+...+...|++++|...+++.......  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6667778888888888888776643    211  2 2345566777788888888888888877543211  1  23456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHH
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQ----KLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHFFS  325 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~  325 (423)
                      ..+...+...|++++|...+++.....-.++  .....    ..+..+...|++++|...++........+. .....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7777778888889888888888764311111  11111    233447788999999999888766432211 1111256


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhC----CCCCCChHhHHHHHHHHhhccccc-hHHHHHHHH
Q 014502          326 GIIRLYALSDRLDDVEYSVGRMGKQ----GLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHI  383 (423)
Q Consensus       326 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~  383 (423)
                      .+...+...|++++|...+++..+.    |..+.....+..+..++...|+.+ +...+.+.+
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            7778888999999999998887642    111111234556677777788774 455555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.35  E-value=3.3e-10  Score=106.30  Aligned_cols=48  Identities=17%  Similarity=-0.050  Sum_probs=22.7

Q ss_pred             CHhHHHHHHHHHhcCC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502          107 CLDEYACLIALSGKVQ-----NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG  157 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  157 (423)
                      ++..+..|...+...+     ++++|...|++..+.|..   ..+..+...|...+
T Consensus        68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~  120 (452)
T 3e4b_A           68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP  120 (452)
T ss_dssp             ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred             CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence            4445555555333333     566666666666665422   24444444444433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=1e-10  Score=101.96  Aligned_cols=169  Identities=13%  Similarity=-0.007  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGG------G-WKINENMAQKLVKCYCELGRVDELEEQLETLTKC------NQSP  317 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p  317 (423)
                      ++..+...+...|++++|.+.+++..+.      . .+....++..+...|...|++++|...+++..+.      +..|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3444444444445555554444444332      0 1122334555556666666666666666665542      1122


Q ss_pred             chHHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCChHhHHHHHHHHhhccccchHHHHHHHH------h
Q 014502          318 EVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQ-------GLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHI------K  384 (423)
Q Consensus       318 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~  384 (423)
                      .. ..++..+...|...|++++|...+++..+.       ...+.....+..+...+...+.......+....      .
T Consensus       167 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (283)
T 3edt_B          167 NV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK  245 (283)
T ss_dssp             HH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred             HH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence            22 122566666666677777777666666542       122222334444444444333332222222221      1


Q ss_pred             CCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          385 GSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      ...+....++..+..+|.+.|++++|..++++..+.
T Consensus       246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            111224667889999999999999999999987653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=8.6e-11  Score=110.29  Aligned_cols=308  Identities=13%  Similarity=0.022  Sum_probs=163.9

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV---PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG  157 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  157 (423)
                      ++.|++++|.+.|    ++..+.+  +..++..|...|...|+.   ++|...|++..+.    ++..+..+...+...+
T Consensus        14 ~~~g~~~~A~~~~----~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A           14 LKRGDTVTAQQNY----QQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred             HhCCCHHHHHHHH----HHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence            7899999999995    4444444  344555666677777877   8999999998864    6667777777555555


Q ss_pred             -----CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCC-------------------
Q 014502          158 -----DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD---AMNKWYAANIAAGF-------------------  210 (423)
Q Consensus       158 -----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~-------------------  210 (423)
                           ++++|+..|++..+ .|..   ..+..|...|...+..+   ++.+.+......|.                   
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~-~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFA-NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHH-TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCcCHHHHHHHHHHHHH-CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence                 78899999999887 4322   24445555555443321   22222222222211                   


Q ss_pred             -------------CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHH
Q 014502          211 -------------SVNVQTYESLIHGSLKAR---DFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR----RKLDRVKS  270 (423)
Q Consensus       211 -------------~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~  270 (423)
                                   ..+...+..|...|.+.|   ++++|++.|++..+.| .++...+..+...|...    +++++|..
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                         122335666666666677   7777777777776666 44455445555555443    57777777


Q ss_pred             HHHHHHhCCCccCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcC-----ChhHHHH
Q 014502          271 FLKFLLGGGWKINENMAQKLVKC-Y--CELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSD-----RLDDVEY  342 (423)
Q Consensus       271 ~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-----~~~~a~~  342 (423)
                      +|++.. .   -+...+..+... |  ...+++++|...|++..+.|.   ...  +..|-..|. .|     ++++|.+
T Consensus       239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A--~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRA--ELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHH--HHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHH--HHHHHHHHH-cCCCCCCCHHHHHH
Confidence            777766 2   234445555555 3  346777777777777766551   222  444555554 44     6777777


Q ss_pred             HHHHHHhCCCCCCChHhHHHHHHHHhhc----cccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHh----cCChhHHHHH
Q 014502          343 SVGRMGKQGLSFKSAEDVEMVICSYFRC----AAYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRR----AGLSGKLDSV  413 (423)
Q Consensus       343 ~~~~m~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~  413 (423)
                      .|++..     +.++.....|...|...    .+.+ +...+.+....|   ++.....|...|..    ..+.++|...
T Consensus       309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            777655     23466666666666552    2332 455555555544   23445555555553    3467777777


Q ss_pred             HHHHHhcC
Q 014502          414 INEMKFAE  421 (423)
Q Consensus       414 ~~~m~~~g  421 (423)
                      |+.-.+.|
T Consensus       381 ~~~A~~~g  388 (452)
T 3e4b_A          381 SQLAKAQD  388 (452)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHCC
Confidence            77666555

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=2.7e-10  Score=92.46  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      .|..+...+...|++++|.+.++++.+.  .+.+..++..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            4444555555556666666666555431  123444555555555556666666666555554431 2445555555555


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHH
Q 014502          225 LKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELE  304 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~  304 (423)
                      ...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            55566666655555554432 2334445555555555555555555555554432 223444555555555555555555


Q ss_pred             HHHHHHHh
Q 014502          305 EQLETLTK  312 (423)
Q Consensus       305 ~~~~~~~~  312 (423)
                      ..++++.+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=4.6e-10  Score=94.96  Aligned_cols=207  Identities=10%  Similarity=0.002  Sum_probs=139.9

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL  220 (423)
Q Consensus       141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  220 (423)
                      .|+..+......+...|++++|+..|++..+ ...+++...+..+..++...|++++|++.+++..+.... +...|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence            3667888888888888888888888888876 222266677777888888888888888888888876533 56778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC---HHhHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI-------PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKL  290 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l  290 (423)
                      ...|...|++++|++.|++..+.. +.+.       ..|..+...+...|++++|.+.+++..+.  .|+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            888888888888888888887653 2233       34666667777788888888888888774  344   4566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502          291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI  364 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~  364 (423)
                      ..+|...|     ...++++...+.. +...  |....  ....+.+++|...+++..+  +.|.++.....+.
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~--~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~  221 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLASS-NKEK--YASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGTTT-CHHH--HHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHhcccC-CHHH--HHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence            66665443     3344554443211 1111  33322  3345567888888888877  4455565554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.33  E-value=2.7e-09  Score=97.77  Aligned_cols=231  Identities=9%  Similarity=0.011  Sum_probs=111.9

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCC-CCHhHHHHHHHHHh--cCCChhHHH---------HHHHHHHHCCCCCCH----H
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNE-SCLDEYACLIALSG--KVQNVPFAM---------HVFTSMEAQGIKPDS----A  144 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~---------~~~~~m~~~g~~p~~----~  144 (423)
                      ..+++.++|.++++.+-..+..... ++...|-.++..-.  -.+.+..+.         +.++.+.....+.+.    .
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY  102 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence            5788889998886554333322211 33444444443310  011111122         455554332111010    0


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAA----GF-SV-NV  214 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~-~~  214 (423)
                      .+......+...|++++|+..|++..+...-.++    ..++..+...|...|++++|...+++..+.    +- .+ ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            1222334455667777777777776542111122    235566666677777777777766665542    10 11 13


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccCH
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLG-----GGWKINE  284 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~  284 (423)
                      .+++.+...|...|++++|.+.|++..+.    +..+ ...++..+...|...|++++|...+++..+     .. +...
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~  261 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence            45556666666666666666666655431    1111 112344455555555555555555555544     21 1123


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          285 NMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      .++..+...|.+.|++++|...+++..+
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4444555555555555555555555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=2.4e-10  Score=92.81  Aligned_cols=163  Identities=13%  Similarity=-0.010  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF  189 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  189 (423)
                      .|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+.  .+.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            34455555555666666666665555432 224555556666666666666666666665542  123445555555666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVK  269 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  269 (423)
                      ...|++++|.+.+++..+... .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666666555432 245555666666666666666666666655543 234555666666666666666666


Q ss_pred             HHHHHHHh
Q 014502          270 SFLKFLLG  277 (423)
Q Consensus       270 ~~~~~~~~  277 (423)
                      ..+++..+
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=1e-09  Score=100.55  Aligned_cols=234  Identities=9%  Similarity=-0.002  Sum_probs=174.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-----CHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGI-KP----DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-----NSK  180 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~  180 (423)
                      |......+...|++++|...|++..+... .+    ...++..+...|...|++++|...+++..+...-.+     ...
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            34455567789999999999999876421 12    245788899999999999999999988765211111     245


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIP  250 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~  250 (423)
                      +++.+...|...|++++|.+.|++..+.    +.. ....+++.+...|...|++++|.+.|++..+     .. +....
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~  262 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence            7888999999999999999999987753    211 1245788889999999999999999998876     33 23367


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKINENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHF  323 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~  323 (423)
                      ++..+...+.+.|++++|...+++..+..    .+.....+..+...|...++   +++|...+++   .+..|+.. ..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~-~~  338 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE-AC  338 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH-HH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH-HH
Confidence            78889999999999999999999987642    12223355666667777888   6777777765   23333332 23


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +..+...|...|++++|...|++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77899999999999999999998765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=8.2e-11  Score=102.63  Aligned_cols=158  Identities=15%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             cCCHHHHHHHHHHHHHHHhhC---CC-CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHH
Q 014502           83 SSSPKKAQLVLEWRLDKMLKG---NE-SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ------GIKP-DSAVFNSLIC  151 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~---~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~  151 (423)
                      .|++++|...++..++...+.   .. ....++..+...+...|++++|...|++..+.      +-.| ...++..+..
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            455555555544333322221   11 13445555566666666666666666555432      1111 2334555555


Q ss_pred             HHHccCCHHHHHHHHHHHHhcC-----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSE-----E-YKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA------GFSV-NVQTYE  218 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~-----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~  218 (423)
                      +|...|++++|.+.|++..+..     . .+....++..+...+...|++++|.+++++..+.      +-.| ...++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5555555555555555554310     0 0112334444445555555555555555544432      0011 223344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 014502          219 SLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .+...|.+.|++++|.+.+++.
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~  195 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEI  195 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            4444444445555555444444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.28  E-value=2.9e-10  Score=112.01  Aligned_cols=164  Identities=11%  Similarity=0.101  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      ..+|+.+...|.+.|++++|++.|++..+.   .| +..+|..+..+|.+.|++++|++.|++..+.... +...|+.+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg   84 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            446666666666666666666666666552   23 3456666666666666666666666666655422 455666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      ..|.+.|++++|++.|++..+.. +-+...|..+...+...|++++|.+.|++.++.. +-+...+..+..+|...|+++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence            66666666666666666665532 2234556666666666666666666666665532 223455556666666666666


Q ss_pred             HHHHHHHHHHh
Q 014502          302 ELEEQLETLTK  312 (423)
Q Consensus       302 ~a~~~~~~~~~  312 (423)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.27  E-value=3.1e-10  Score=111.77  Aligned_cols=165  Identities=12%  Similarity=0.076  Sum_probs=132.6

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAF  185 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l  185 (423)
                      +..+|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++..+.   .| +...|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence            567888888888888999999988888887632 25678888888888889999999888888762   34 46688888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ..++.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            88888889999999988888876533 67788888888888999999999888887753 23467788888888888888


Q ss_pred             HHHHHHHHHHHh
Q 014502          266 DRVKSFLKFLLG  277 (423)
Q Consensus       266 ~~a~~~~~~~~~  277 (423)
                      ++|.+.++++.+
T Consensus       162 ~~A~~~~~kal~  173 (723)
T 4gyw_A          162 TDYDERMKKLVS  173 (723)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.26  E-value=2.1e-09  Score=98.11  Aligned_cols=265  Identities=13%  Similarity=0.027  Sum_probs=186.6

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCC-CH----hHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNES-CL----DEYACLIALSGKVQNVPFAMHVFTSMEAQGI-KPD----SAVFNSLI  150 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li  150 (423)
                      ...|++++|...++    +......+ +.    .+++.+...+...|++++|.+.+++...... .++    ..++..+.
T Consensus        25 ~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           25 INDGNPDEAERLAK----LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHTTCHHHHHHHHH----HHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHH----HHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            57899999999954    33333332 22    2567778888899999999999998765310 112    23466778


Q ss_pred             HHHHccCCHHHHHHHHHHHHhc---CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 014502          151 CACLCSGDVVTALSLFEIMVSS---EEYK--P-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS----VNVQTYESL  220 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~---~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l  220 (423)
                      ..+...|++++|...+++..+.   .+..  | ...++..+...+...|++++|...+++.......    ....++..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            8899999999999999887642   1222  2 2345667788899999999999999988764321    124567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIP--SIPILE----KVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLV  291 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li  291 (423)
                      ...+...|++++|...+++.....-.+  ......    ..+..+...|++++|...+++.......+   ....+..+.
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la  260 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  260 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence            889999999999999999886531111  122211    23344778999999999999887643221   123466778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          292 KCYCELGRVDELEEQLETLTKCNQ---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..+...|++++|...++.......   .+.....++..+...+...|+.++|...+++...
T Consensus       261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            889999999999999998754211   1112212366778889999999999999988765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.24  E-value=1.9e-09  Score=91.09  Aligned_cols=200  Identities=11%  Similarity=-0.021  Sum_probs=156.6

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDA  184 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~  184 (423)
                      .|+..+......+.+.|++++|...|++..+...+++...+..+..++...|++++|++.|++..+.   .| +...|..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~   81 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIG   81 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHH
Confidence            5678899999999999999999999999998764468888888999999999999999999999872   34 4568888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNV-------QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS---IPILEK  254 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~  254 (423)
                      +...+...|++++|++.+++..+.... +.       ..|..+...+.+.|++++|++.|++..+.  .|+   ...+..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence            999999999999999999999987433 44       55788888999999999999999999875  465   456666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                      +...+...     +..+++++...+ ..+...|....  ....+.+++|...+++..+.  .|+...
T Consensus       159 l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~  215 (228)
T 4i17_A          159 LGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE  215 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence            76666544     444556665543 23444554443  33456689999999999884  465543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.21  E-value=1.6e-07  Score=91.50  Aligned_cols=146  Identities=12%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             HHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC---hhHHHHHH
Q 014502           56 KTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN---VPFAMHVF  131 (423)
Q Consensus        56 ~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~  131 (423)
                      ...++.-....+ -|..+|..+|.. -+.+....+..+    ++++....+.....|..-+..-.+.++   ++.+..+|
T Consensus        52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~v----yEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYET----FDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            334444433333 467777777777 455677777777    556666666666777777777777777   77777777


Q ss_pred             HHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHHhcCCC-CCC-HHhHHHHHHHHHh---------
Q 014502          132 TSMEAQG-IKPDSAVFNSLICACLCSGDV--------VTALSLFEIMVSSEEY-KPN-SKTYDAFISGFSS---------  191 (423)
Q Consensus       132 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~-~~~~~~li~~~~~---------  191 (423)
                      ++..... .+|++..|...+.-..+.++.        +...++|+.....-|. .|+ ...|...+.....         
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            7777653 136777777766655544432        2334666665543455 443 3455555544321         


Q ss_pred             cCCHHHHHHHHHHHH
Q 014502          192 LGNVDAMNKWYAANI  206 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~  206 (423)
                      .++++.+.++|++.+
T Consensus       207 q~~~~~~R~iy~raL  221 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHH
Confidence            223445555555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.16  E-value=4.1e-07  Score=88.71  Aligned_cols=373  Identities=8%  Similarity=0.012  Sum_probs=225.9

Q ss_pred             CCCccccHHHHHHHhcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCC---HHHHHHHHHHHHHHHhhCCC--C
Q 014502           34 STSVSSSNPLISRLLQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSS---PKKAQLVLEWRLDKMLKGNE--S  106 (423)
Q Consensus        34 ~~~~~~~~~ll~~l~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~---~~~a~~~~~~~~~~m~~~~~--~  106 (423)
                      .-+...|..++..+-+.+ ...+..+++.+... ++.+...|...+.. .+.++   .+.+..+    |++-.....  |
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l----feRal~~~~~~~  137 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV----LARCLSKELGNN  137 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH----HHHHTCSSSCCC
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH----HHHHHHhcCCCC
Confidence            345567777777766655 44567888888654 34456778888887 77777   8899888    556655553  7


Q ss_pred             CHhHHHHHHHHHhcCCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCCHHHHHHHH
Q 014502          107 CLDEYACLIALSGKVQNV--------PFAMHVFTSMEA-QGI-KPD-SAVFNSLICACLC---------SGDVVTALSLF  166 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~---------~g~~~~A~~~~  166 (423)
                      ++..|..-+....+.++.        +.+.++|+.... .|. .|+ ...|...+.....         .++++.+..+|
T Consensus       138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy  217 (679)
T 4e6h_A          138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY  217 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence            888888877766555443        344577777554 465 554 5688888875442         33466777788


Q ss_pred             HHHHhcCCCCCCHHhHH---HHHHHHH----------hcCCHHHHHH---------------------------------
Q 014502          167 EIMVSSEEYKPNSKTYD---AFISGFS----------SLGNVDAMNK---------------------------------  200 (423)
Q Consensus       167 ~~m~~~~~~~p~~~~~~---~li~~~~----------~~~~~~~a~~---------------------------------  200 (423)
                      +.... .....-..+|.   .+.....          ...+++.|..                                 
T Consensus       218 ~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~  296 (679)
T 4e6h_A          218 KTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE  296 (679)
T ss_dssp             HHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred             HHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence            77764 11111112221   1111100          0001112222                                 


Q ss_pred             ----------------------------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 014502          201 ----------------------------------WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVD-RFYEEMMSLGI  245 (423)
Q Consensus       201 ----------------------------------~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~  245 (423)
                                                        +|++....- .-+...|-..+.-+.+.|+.++|. ++|++.... +
T Consensus       297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~  374 (679)
T 4e6h_A          297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-I  374 (679)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C
T ss_pred             hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C
Confidence                                              233332221 113333444444455667777786 888877653 2


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------ccC------------HHhHHHHHHHHHhcCCHHHHH
Q 014502          246 IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW---------KIN------------ENMAQKLVKCYCELGRVDELE  304 (423)
Q Consensus       246 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---------~~~------------~~~~~~li~~~~~~g~~~~a~  304 (423)
                      +.+...|...+...-+.|+++.|.++|+.+.+...         .|+            ..+|...+....+.|+.+.|.
T Consensus       375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR  454 (679)
T 4e6h_A          375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR  454 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence            34555566777777788888888888888876310         131            236777777777788888899


Q ss_pred             HHHHHHHhC-CCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHH
Q 014502          305 EQLETLTKC-NQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDH  382 (423)
Q Consensus       305 ~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  382 (423)
                      .+|....+. +. +....  |...+..-.+. ++.+.|..+|+...+.  .|.++..|...+......|+.+.++.+++.
T Consensus       455 ~vf~~A~~~~~~-~~~~l--yi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfer  529 (679)
T 4e6h_A          455 KIFGKCRRLKKL-VTPDI--YLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFES  529 (679)
T ss_dssp             HHHHHHHHTGGG-SCTHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC-CChHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999888775 21 11222  33333223333 4588899998888874  355677777778777777887655544444


Q ss_pred             HhCCCcc---cHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          383 IKGSYKL---RRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       383 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      .....++   ....|...+..-.+.|+.+.+.++.+++.+
T Consensus       530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4333331   346688888888888999999888888864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=4.9e-09  Score=92.30  Aligned_cols=162  Identities=7%  Similarity=-0.048  Sum_probs=76.8

Q ss_pred             HHHhcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHH
Q 014502          116 ALSGKVQNVPFAMHVFTSMEAQ----GIKPD-SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFI  186 (423)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li  186 (423)
                      ..|...|++++|...|++..+.    |-+++ ..+|+.+..+|...|++++|+..|++..+...-..+    ..+++.+.
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455566666666666655432    21111 345666666666666666666666655431000001    23445555


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHH
Q 014502          187 SGFSSL-GNVDAMNKWYAANIAAGFSV-N----VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI------PILEK  254 (423)
Q Consensus       187 ~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~  254 (423)
                      ..|... |++++|+..|++..+..... +    ..+++.+...+.+.|++++|+..|++..+.......      ..|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            555553 55555555555544321000 0    233445555555555555555555555443211111      13344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      +..++...|++++|...+++..+
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444455555555555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=9.1e-09  Score=78.39  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=8.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHH
Q 014502          149 LICACLCSGDVVTALSLFEIM  169 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m  169 (423)
                      +...+...|++++|..+++++
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~   27 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKA   27 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHH
Confidence            333333334444444433333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=1.8e-08  Score=87.57  Aligned_cols=188  Identities=12%  Similarity=0.055  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          162 ALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       162 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      |+..|++... .+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5666666654 22 34445555666677777777777777777655543 125566666677777777777777777777


Q ss_pred             HHCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          241 MSLGIIP-----SIPILEKVLEGL--CARR--KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       241 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      .+.  .|     +..+...+..++  ...|  ++.+|..+|+++.+.  .|+......++.++.+.|++++|++.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            653  34     244555555442  2223  677777777776553  2443333334446677777777777776554


Q ss_pred             hCC-----C---CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH
Q 014502          312 KCN-----Q---SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV  360 (423)
Q Consensus       312 ~~~-----~---~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  360 (423)
                      +..     .   .|+.... .-.+|......|+  +|.+++.++.+  ..|++|-..
T Consensus       239 ~~~p~~~~k~~~~p~~~~~-LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i~  290 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTF-LANQITLALMQGL--DTEDLTNQLVK--LDHEHAFIK  290 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHH-HHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHHH
T ss_pred             HhcccccccccCCCCCHHH-HHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHHH
Confidence            420     0   1333322 3223333333454  66777777766  335545443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.09  E-value=1.2e-08  Score=88.12  Aligned_cols=187  Identities=9%  Similarity=-0.032  Sum_probs=119.8

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CH
Q 014502          141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS-V-NV  214 (423)
Q Consensus       141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~  214 (423)
                      .+...+-.....+.+.|++++|+..|+++.+.   .|+    ...+..+..++.+.|++++|+..|++..+.... | ..
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            35667777777788888888888888888763   233    456677778888888888888888888775321 1 24


Q ss_pred             HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHH
Q 014502          215 QTYESLIHGSLK--------ARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINEN  285 (423)
Q Consensus       215 ~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~  285 (423)
                      ..+..+..++.+        .|++++|+..|++..+..  |+. .......              .+..+...    -..
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~  149 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LAR  149 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHH
Confidence            556666777777        788888888888776643  321 1111110              01110000    011


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS----------DRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  350 (423)
                      .+..+...|.+.|++++|...|+++.+...........+..+..+|...          |++++|...|++..+.
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            2455677788888888888888888774432222222366677777755          7788888888888773

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.08  E-value=8.6e-08  Score=83.31  Aligned_cols=244  Identities=11%  Similarity=0.002  Sum_probs=165.0

Q ss_pred             HHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCH
Q 014502          116 ALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNV  195 (423)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~  195 (423)
                      +-..-.|++..++.-.   .+.........-.-+.++|...|++...          ..-.|....+..+...+ ..+  
T Consensus        21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~la~~~-~~~--   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLYVQFL-DTK--   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred             HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHHHHHh-ccc--
Confidence            3444568887777633   2221121233444455788888887642          11234544555444433 322  


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRKLDRVKSFLKF  274 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~  274 (423)
                        |+..|++....+ .++..++..+..++...|++++|++++.+....+.. -+...+...+..+.+.|+.+.|.+.+++
T Consensus        85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              778888877665 456666678889999999999999999988766532 3466788899999999999999999999


Q ss_pred             HHhCCCcc-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          275 LLGGGWKI-----NENMAQKLVKCY--CELG--RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       275 ~~~~g~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      |.+.  .|     +..+...+..++  ...|  ++++|..+|+++....  |+...  -..++.++...|++++|.+.++
T Consensus       162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~--~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKT--QLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHH--HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCccc--HHHHHHHHHHcCCHHHHHHHHH
Confidence            9884  56     355555666663  3334  8999999999997744  54111  2334448999999999999999


Q ss_pred             HHHhC-----CC---CCCChHhHHHHHHHHhhccccchHHHHHHHHhC
Q 014502          346 RMGKQ-----GL---SFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKG  385 (423)
Q Consensus       346 ~m~~~-----~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  385 (423)
                      .+.+.     ..   .|.++.+...+|......|+ ++.+.+.+....
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~  282 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHT
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHh
Confidence            77653     11   36779999666666666676 666666666553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=1.1e-08  Score=90.04  Aligned_cols=209  Identities=11%  Similarity=-0.021  Sum_probs=137.7

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCC-HHhHHHHHHHHHhcCCHHHH
Q 014502          123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKTYDAFISGFSSLGNVDAM  198 (423)
Q Consensus       123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a  198 (423)
                      ++++|...|++.               ...|...|++++|...|++..+.   .|-+++ ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            488888888776               34577789999999988877541   121222 45788888999999999999


Q ss_pred             HHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 014502          199 NKWYAANIAAGF---SV--NVQTYESLIHGSLKA-RDFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       199 ~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~  267 (423)
                      +..+++..+...   .+  -..+++.+...|... |++++|+..|++..+.    +-.+. ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            998887765311   11  135677788888885 8888888888877542    11111 3457777888888888888


Q ss_pred             HHHHHHHHHhCCCccCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHH--hcC
Q 014502          268 VKSFLKFLLGGGWKINE------NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL----HFFSGIIRLYA--LSD  335 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~~~li~~~~--~~g  335 (423)
                      |...+++..+.......      ..+..+..++...|++++|...+++..+.  .|+...    ..+..++..|.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            88888888775432221      14566777788888888888888887762  333211    11334455553  345


Q ss_pred             ChhHHHHHHHHHH
Q 014502          336 RLDDVEYSVGRMG  348 (423)
Q Consensus       336 ~~~~a~~~~~~m~  348 (423)
                      ++++|+..|+++.
T Consensus       255 ~~~~A~~~~~~~~  267 (292)
T 1qqe_A          255 QLSEHCKEFDNFM  267 (292)
T ss_dssp             THHHHHHHHTTSS
T ss_pred             HHHHHHHHhccCC
Confidence            5677777665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.07  E-value=1.3e-08  Score=77.42  Aligned_cols=129  Identities=12%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF  189 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  189 (423)
                      +|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            34455555555556666666665555442 124445555555555555555555555555541  122344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      ...|++++|.++++++.+... .+..++..+...+.+.|++++|.+.++++.+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555555555554431 1344455555555555555555555555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.04  E-value=2e-08  Score=86.77  Aligned_cols=190  Identities=10%  Similarity=-0.032  Sum_probs=130.6

Q ss_pred             CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HH
Q 014502          105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD---SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SK  180 (423)
Q Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~  180 (423)
                      ..+...+-.+...+.+.|++++|...|+++.+.... +   ...+..+..+|...|++++|+..|++..+...-.|. ..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            357788888999999999999999999999986321 3   678899999999999999999999999873211222 34


Q ss_pred             hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          181 TYDAFISGFSS--------LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPIL  252 (423)
Q Consensus       181 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  252 (423)
                      .+..+..++..        .|++++|+..|++..+.... +......+..              +......    ....+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence            66777888888        99999999999999987432 2222222111              1111000    01124


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCcc--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCEL----------GRVDELEEQLETLTKCN  314 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~  314 (423)
                      ..+...|...|++++|...++++.+.....  ....+..+..+|...          |++++|...++++.+..
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            455666777777777777777776642111  234556666666655          77788888888877743

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=3.2e-08  Score=82.25  Aligned_cols=122  Identities=10%  Similarity=0.027  Sum_probs=57.6

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR  228 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  228 (423)
                      +..+|.+.|++++|+..|++..+..  +-+...+..+..++...|++++|++.|++..+..+. +..+|..+...|...|
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence            5555555666666666665555421  223445555555556666666666666655554322 4455555555554433


Q ss_pred             C--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          229 D--FDSVDRFYEEMMSLGIIPSIP--ILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       229 ~--~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      +  .+.+...++...    .|+..  .+.....++...|++++|...|++.++
T Consensus       137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            2  222333333322    22221  222223333444555555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.96  E-value=5.9e-08  Score=80.65  Aligned_cols=124  Identities=11%  Similarity=0.032  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                      +..++.+.|++++|+..|++..+..+. +...|..+...|...|++++|+..|++..+.. +-+..++..+...|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            666777777777777777777766433 56667777777777777777777777776643 2335566666666554433


Q ss_pred             --HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          265 --LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       265 --~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                        .+.+...++....  ..|....+.....++...|++++|...|++..+
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence              2333444444332  122222333344455556677777777777666

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=1.6e-07  Score=78.20  Aligned_cols=175  Identities=8%  Similarity=-0.066  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC----CHHHHHHHH
Q 014502          127 AMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG----NVDAMNKWY  202 (423)
Q Consensus       127 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~  202 (423)
                      |.+.|++..+.|   ++..+..+...|...+++++|++.|++..+ .   -+...+..|-..|.. +    ++++|+++|
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            444444444443   445555555555555555555555555544 2   233444444444444 3    555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 014502          203 AANIAAGFSVNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCA----RRKLDRVKSFLK  273 (423)
Q Consensus       203 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~  273 (423)
                      ++..+.|   +...+..|...|..    .+++++|++.|++..+.|.. .+...+..+-..|..    .+++++|..+++
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            5554433   34444444444444    45555555555555444311 013444444444444    445555555555


Q ss_pred             HHHhCCCccCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 014502          274 FLLGGGWKINENMAQKLVKCYCEL-G-----RVDELEEQLETLTKCN  314 (423)
Q Consensus       274 ~~~~~g~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~  314 (423)
                      +..+.  ..+...+..|..+|... |     ++++|...|+...+.|
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55544  11222344444444432 2     4555555555555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.95  E-value=1.4e-07  Score=79.44  Aligned_cols=190  Identities=8%  Similarity=-0.009  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNV--QTYE  218 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~  218 (423)
                      +...+..+...+...|++++|+..|+++.+...-.|. ...+..+..++.+.|++++|+..|+++.+....-..  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4556666777888889999999999988863211121 246677788888999999999999988876433111  2444


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          219 SLIHGSLK------------------ARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGG  279 (423)
Q Consensus       219 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  279 (423)
                      .+..++.+                  .|++++|...|+++.+..  |+. ..+......          ..+...+    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence            44445543                  345555555555554432  221 111110000          0000000    


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 014502          280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQG  351 (423)
Q Consensus       280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  351 (423)
                          ......+...|.+.|++++|...|+++.+..........++..+..+|.+.|+.++|.+.++.+...+
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                00112345667778888888888888777442222112236677788888888888888888777643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.95  E-value=4.1e-08  Score=96.90  Aligned_cols=174  Identities=10%  Similarity=-0.066  Sum_probs=104.9

Q ss_pred             HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014502          190 SSLGNVDAMNKWYAANI--------AAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA  261 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  261 (423)
                      ...|++++|++.+++..        +.. ..+...+..+...|.+.|++++|++.|++..+.. +-+...|..+...+..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            55667777777777666        322 2245566666666777777777777776666543 2345566666666667


Q ss_pred             cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502          262 RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE  341 (423)
Q Consensus       262 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~  341 (423)
                      .|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.  .|+.... |..+...|...|++++|.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a-~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISA-AFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHH-HHHHHHHHHHcCCHHHHH
Confidence            777777777777766642 2244556666666777777777 7777766663  2443322 666666677777777777


Q ss_pred             HHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          342 YSVGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       342 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      +.|++..+  ..|.++..+..+..++...+.
T Consensus       555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred             HHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence            77766655  345556666666666655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=1.1e-08  Score=100.88  Aligned_cols=200  Identities=10%  Similarity=-0.030  Sum_probs=149.1

Q ss_pred             HhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          100 MLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSME--------AQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       100 m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +....+.|...+....   ...|++++|.+.+++..        +.. +.+...+..+..++...|++++|++.|++..+
T Consensus       386 ~p~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  461 (681)
T 2pzi_A          386 VPLVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAE  461 (681)
T ss_dssp             CBCCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CccCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence            3444444444443322   77899999999999987        332 33567888888999999999999999999886


Q ss_pred             cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014502          172 SEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPI  251 (423)
Q Consensus       172 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  251 (423)
                      .  -+-+...|..+..++...|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +-+...
T Consensus       462 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a  536 (681)
T 2pzi_A          462 R--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISA  536 (681)
T ss_dssp             H--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHH
T ss_pred             c--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHH
Confidence            2  1345678888888999999999999999998887543 67788889999999999999 99999887754 345678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGR--------VDELEEQLETL  310 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~--------~~~a~~~~~~~  310 (423)
                      |..+..++.+.|++++|.+.+++..+.  .|+ ...+..+..++...++        +++|.+.+..+
T Consensus       537 ~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          537 AFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            888899999999999999999988874  354 4566667777655444        45555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.92  E-value=4.9e-09  Score=82.24  Aligned_cols=80  Identities=15%  Similarity=0.035  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHh
Q 014502          289 KLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYF  368 (423)
Q Consensus       289 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~  368 (423)
                      .+...|.+.|++++|.+.|++..+.  .|+.... |..+...|...|++++|+..|++..+  +.|.++..+..+...|.
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINV--QERDPKA-HRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            3444444444444444444444442  2322211 44444444444444444444444444  22334444444444444


Q ss_pred             hcccc
Q 014502          369 RCAAY  373 (423)
Q Consensus       369 ~~~~~  373 (423)
                      +.|+.
T Consensus       111 ~~~~~  115 (150)
T 4ga2_A          111 KNDVT  115 (150)
T ss_dssp             HHCSS
T ss_pred             HcCCh
Confidence            44443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.91  E-value=9.6e-09  Score=80.57  Aligned_cols=145  Identities=12%  Similarity=-0.082  Sum_probs=114.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG  298 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  298 (423)
                      |...+...|++++|++.++.....  .|+ ...+..+...|.+.|++++|.+.+++.++.. +-+..+|..+..+|.+.|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            344556678999999999887643  233 3356678889999999999999999999863 346789999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYS-VGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      ++++|...|++..+.  .|+.... |..+...|.+.|+.++|.+. +++..+  +.|.++..|......+...|+
T Consensus        80 ~~~~A~~~~~~al~~--~p~~~~~-~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVEL--NPTQKDL-VLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999984  4665433 88899999999999887665 578777  567889888887777777664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.90  E-value=1.1e-07  Score=84.30  Aligned_cols=201  Identities=7%  Similarity=-0.049  Sum_probs=119.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVT  161 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  161 (423)
                      +.|++.+|.++++...+.+..    .         .+...++++.|...|++.               ...|...|++++
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~----~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~   54 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT----S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQ   54 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC----C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc----c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHH
Confidence            456777888875443332221    0         011146666666666654               345666777777


Q ss_pred             HHHHHHHHHhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhcCCHHH
Q 014502          162 ALSLFEIMVSS---EEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAG--F-SV--NVQTYESLIHGSLKARDFDS  232 (423)
Q Consensus       162 A~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~-~~--~~~~~~~li~~~~~~g~~~~  232 (423)
                      |...|.+..+.   .+-.+ -..+|+.+...|.+.|++++|+..|++..+.-  . .+  -..+++.+...|.+ |++++
T Consensus        55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~  133 (307)
T 2ifu_A           55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK  133 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence            77777665431   11001 13366677777777777777777777655421  0 11  13456666777777 88888


Q ss_pred             HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccC-HHhHHHHHHHHHhcCCHHH
Q 014502          233 VDRFYEEMMSL----GIIP-SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       233 a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~  302 (423)
                      |++.|++..+.    |-.+ ...++..+...+...|++++|...+++..+.    +..+. ...+..+..++...|++++
T Consensus       134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            88777766542    1111 1345667777777888888888888777652    11111 1255556666777788888


Q ss_pred             HHHHHHHHH
Q 014502          303 LEEQLETLT  311 (423)
Q Consensus       303 a~~~~~~~~  311 (423)
                      |...|++..
T Consensus       214 A~~~~~~al  222 (307)
T 2ifu_A          214 AQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888888776

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.90  E-value=1.9e-06  Score=75.47  Aligned_cols=216  Identities=9%  Similarity=-0.075  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR--DFDSVDRFYEEMMSLGIIPSIPILEKVLEGL----CAR---RKLD  266 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~  266 (423)
                      ++|++.++.+...+.. +..+|+.--..+...|  ++++++++++.+.... +-+..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            4566666555554322 3444555555555555  6666666666655432 11122233222222    222   5666


Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC------hh
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD--ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR------LD  338 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~------~~  338 (423)
                      +++++++.+.+.. +-+..+|+.-.-.+.+.|.++  ++.+.++++.+.+  |..... |+.-...+...|+      ++
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sA-W~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSA-WSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHhccccchhhhHH
Confidence            6677777666643 335556666555566666666  7777777776643  333222 5555445555554      67


Q ss_pred             HHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-chHHHHHH-HHhCC--CcccHHHHHHHHHHHHhcCChhHHHHHH
Q 014502          339 DVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-DRLDLFLD-HIKGS--YKLRRATYDFLVAGYRRAGLSGKLDSVI  414 (423)
Q Consensus       339 ~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~-~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~  414 (423)
                      ++++.++++..  ..|.+...|+.+...+.+.|.. +++..+.+ ....+  -..+...+..+..+|.+.|+.++|.+++
T Consensus       204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            77777777776  3456777777777777776664 33333332 22211  1335667777778888888888888888


Q ss_pred             HHHHh
Q 014502          415 NEMKF  419 (423)
Q Consensus       415 ~~m~~  419 (423)
                      +.+.+
T Consensus       282 ~~l~~  286 (306)
T 3dra_A          282 DLLKS  286 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.89  E-value=2.3e-08  Score=80.75  Aligned_cols=157  Identities=9%  Similarity=-0.027  Sum_probs=65.0

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHh
Q 014502          113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSS  191 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~  191 (423)
                      .+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|++....   .|+...+..+... +..
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence            33444445555555555555444321 113444555555555555555555555554431   1222211111101 111


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKVLEGLCARRKLDRVKS  270 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~  270 (423)
                      .+...+|.+.+++..+.... +...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            11112234444444443211 34444444444555555555555555444432111 12344444444444444444444


Q ss_pred             HHHH
Q 014502          271 FLKF  274 (423)
Q Consensus       271 ~~~~  274 (423)
                      .|++
T Consensus       166 ~y~~  169 (176)
T 2r5s_A          166 KYRR  169 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=5.5e-07  Score=79.12  Aligned_cols=163  Identities=7%  Similarity=-0.037  Sum_probs=97.6

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSK----TYDAFISGFSSLGNVDAMNKWYAANIAAGFS-VN----VQTYES  219 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~  219 (423)
                      .+..+...|++++|..++++..+.....|+..    .+..+...+...+++++|++.|++..+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667778888888888888776322223321    2334556666667788888888777763221 12    235777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccC-HHhHH
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMS----L-GIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKIN-ENMAQ  288 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~  288 (423)
                      +...|...|++++|+..|++..+    . +..+.. .++..+...|.+.|++++|...+++..+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77777777888888777777653    1 111221 25666666677777777777776665432    11112 34566


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHH
Q 014502          289 KLVKCYCELGR-VDELEEQLETLT  311 (423)
Q Consensus       289 ~li~~~~~~g~-~~~a~~~~~~~~  311 (423)
                      .+..+|.+.|+ +++|.+.+++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            66666666663 466666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=4.2e-06  Score=73.28  Aligned_cols=231  Identities=8%  Similarity=-0.027  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH----Hhc---CCH
Q 014502          125 PFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF----SSL---GNV  195 (423)
Q Consensus       125 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~---~~~  195 (423)
                      ++|+++++.+...... +..+|+.--.++...|  +++++++.++.+....  +-+..+|+.--..+    ...   +++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            4555555555554211 3344555555555555  5666666666555421  22223333322222    223   456


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD--SVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK------LDR  267 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~~  267 (423)
                      ++++++++.+.+.... +-.+|+--.-.+.+.|.++  ++++.++++.+.. .-|...|+.-...+...+.      +++
T Consensus       127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            6666666666655433 5555555555555555555  6666666666544 2344455544444444444      666


Q ss_pred             HHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC-CCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          268 VKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE-LEEQLETLTKCN-QSPEVLLHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      +++.++++.... +-|...|+-+-..+.+.|+... +..+.+++.+.+ ..|... .++..+...|.+.|+.++|.++++
T Consensus       205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHH
Confidence            677776666653 3466666666666666666333 444555544322 112111 126666777777777777777777


Q ss_pred             HHHhCCCCCCChHhHHHH
Q 014502          346 RMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~l  363 (423)
                      .+.+. ..|.....|+..
T Consensus       283 ~l~~~-~Dpir~~yW~~~  299 (306)
T 3dra_A          283 LLKSK-YNPIRSNFWDYQ  299 (306)
T ss_dssp             HHHHT-TCGGGHHHHHHH
T ss_pred             HHHhc-cChHHHHHHHHH
Confidence            77642 233335555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.87  E-value=7e-08  Score=93.38  Aligned_cols=154  Identities=9%  Similarity=-0.028  Sum_probs=111.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502          156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR  235 (423)
Q Consensus       156 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  235 (423)
                      .|++++|++.|++..+.  -+.+...|..+...+.+.|++++|.+.+++..+.... +...|..+...|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            47888999999888762  2335678888888999999999999999998877533 67888888899999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 014502          236 FYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL---GRVDELEEQLETLTK  312 (423)
Q Consensus       236 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~  312 (423)
                      .|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...   |++++|.+.+++..+
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            999887754 3456788888889999999999999999988753 34567788888888888   999999999999888


Q ss_pred             CC
Q 014502          313 CN  314 (423)
Q Consensus       313 ~~  314 (423)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            55

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.87  E-value=9.7e-08  Score=83.68  Aligned_cols=164  Identities=7%  Similarity=-0.083  Sum_probs=94.1

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++....   .|+........
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~  191 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence            44556666666666777777777777666542 124556666666667777777777777666541   34433222222


Q ss_pred             -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCC
Q 014502          187 -SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PSIPILEKVLEGLCARRK  264 (423)
Q Consensus       187 -~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~  264 (423)
                       ..+...++.++|.+.+++....... +...+..+...+...|++++|++.|++..+.... .+...+..+...+...|+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence             2244555556666666666655422 5566666666666666666666666666554311 113455666666666666


Q ss_pred             HHHHHHHHHHH
Q 014502          265 LDRVKSFLKFL  275 (423)
Q Consensus       265 ~~~a~~~~~~~  275 (423)
                      .++|...+++.
T Consensus       271 ~~~a~~~~r~a  281 (287)
T 3qou_A          271 GDALASXYRRQ  281 (287)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCcHHHHHHHH
Confidence            66666555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.86  E-value=4.9e-08  Score=78.76  Aligned_cols=154  Identities=8%  Similarity=0.028  Sum_probs=120.4

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICA-CLCSGDV  159 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~  159 (423)
                      ...|++++|...    +++..+..+.+...+..+...+.+.|++++|...|++.....  |+...+...... +...++.
T Consensus        17 ~~~g~~~~A~~~----~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           17 LQQGEHAQALNV----IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHTTCHHHHHHH----HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred             HHcCCHHHHHHH----HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence            789999999999    566666666788999999999999999999999999987653  355444333222 2222334


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV-NVQTYESLIHGSLKARDFDSVDRFYE  238 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~  238 (423)
                      .+|+..+++..+..  +-+...+..+...+...|++++|...|++..+....+ +...+..+...+...|+.++|...|+
T Consensus        91 ~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A           91 SPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             CHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             chHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            45788898887621  3357788889999999999999999999999875443 35688899999999999999999998


Q ss_pred             HHHH
Q 014502          239 EMMS  242 (423)
Q Consensus       239 ~m~~  242 (423)
                      +...
T Consensus       169 ~al~  172 (176)
T 2r5s_A          169 RQLY  172 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=3.7e-07  Score=76.01  Aligned_cols=165  Identities=13%  Similarity=-0.060  Sum_probs=129.7

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHHhcCCCCCCHHh
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG----DVVTALSLFEIMVSSEEYKPNSKT  181 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~~  181 (423)
                      .+..++..+...|...+++++|.+.|++..+.|   ++..+..+...|.. +    ++++|++.|++..+ .   -+...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence            467788888888888899999999999988875   67788888888887 6    89999999999877 3   46677


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          182 YDAFISGFSS----LGNVDAMNKWYAANIAAGFS-VNVQTYESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPIL  252 (423)
Q Consensus       182 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~  252 (423)
                      +..|-..|..    .+++++|+++|++..+.|.. .+...+..|-..|..    .+++++|++.|++..+.+  .+...+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~  165 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE  165 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence            7778888877    78999999999998877532 126778888888888    788999999999988762  334456


Q ss_pred             HHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 014502          253 EKVLEGLCAR-R-----KLDRVKSFLKFLLGGGW  280 (423)
Q Consensus       253 ~~li~~~~~~-g-----~~~~a~~~~~~~~~~g~  280 (423)
                      ..+-..|... |     ++++|..+++...+.|.
T Consensus       166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            6666666543 3     88999999999888774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.86  E-value=1.2e-07  Score=83.10  Aligned_cols=160  Identities=9%  Similarity=-0.071  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEK-VLEGLC  260 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~  260 (423)
                      +..+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|...+++....  .|+...... ....+.
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence            333444444444455555444444443322 3344444444445555555555544444332  223221111 111233


Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHhcCChhH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV-LLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~~~li~~~~~~g~~~~  339 (423)
                      ..++.+.|...+++..+.. +.+...+..+...|...|++++|...++++.+..  |+. ....+..+...|...|+.++
T Consensus       197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHcCCCCc
Confidence            3444444455555544432 2234445555555555555555555555555432  221 01114555555555555555


Q ss_pred             HHHHHHHH
Q 014502          340 VEYSVGRM  347 (423)
Q Consensus       340 a~~~~~~m  347 (423)
                      |...+++.
T Consensus       274 a~~~~r~a  281 (287)
T 3qou_A          274 LASXYRRQ  281 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.85  E-value=7.7e-08  Score=93.09  Aligned_cols=154  Identities=9%  Similarity=-0.011  Sum_probs=105.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 014502           83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA  162 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  162 (423)
                      .|++++|.+.    +++..+..+.+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|
T Consensus         2 ~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A   76 (568)
T 2vsy_A            2 TADGPRELLQ----LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEA   76 (568)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CccHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            3667778877    455555555677888888888888888888888888887763 22567888888888888888888


Q ss_pred             HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 014502          163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA---RDFDSVDRFYEE  239 (423)
Q Consensus       163 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~  239 (423)
                      .+.|++..+.  .+.+...+..+..++.+.|++++|.+.|++..+.... +...+..+...+...   |++++|.+.+++
T Consensus        77 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           77 AVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            8888888762  1335667788888888888888888888888776533 567778888888888   888888888888


Q ss_pred             HHHCC
Q 014502          240 MMSLG  244 (423)
Q Consensus       240 m~~~~  244 (423)
                      ..+.+
T Consensus       154 al~~~  158 (568)
T 2vsy_A          154 AVAQG  158 (568)
T ss_dssp             HHHHT
T ss_pred             HHhcC
Confidence            77654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.84  E-value=5.2e-07  Score=75.89  Aligned_cols=184  Identities=9%  Similarity=0.027  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH----Hh
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII-PS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NM  286 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~  286 (423)
                      +...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...++++.+..  |+.    ..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            3455666677788889999999999888764311 21 3567777888888899999999998888753  322    13


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhH------
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDV------  360 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~------  360 (423)
                      +..+..++.+.|..     .++            .  |..+...+...|++++|...|+++.+.  .|+++..+      
T Consensus        81 ~~~~g~~~~~~~~~-----~~~------------~--~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l  139 (225)
T 2yhc_A           81 MYMRGLTNMALDDS-----ALQ------------G--FFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL  139 (225)
T ss_dssp             HHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-----hhh------------h--hhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH
Confidence            44444555442100     000            0  111112222334444444444444431  12222222      


Q ss_pred             -----------HHHHHHHhhccccc-hHHHHHHHHhCCCccc----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 014502          361 -----------EMVICSYFRCAAYD-RLDLFLDHIKGSYKLR----RATYDFLVAGYRRAGLSGKLDSVINEMKFAE  421 (423)
Q Consensus       361 -----------~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  421 (423)
                                 ..+...|.+.|+.+ +...+.+.+..  .|+    ...+..+..++.+.|++++|.+.++.+...+
T Consensus       140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                       23455677777774 56666666653  222    3568888899999999999999998876654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=1.4e-06  Score=76.46  Aligned_cols=167  Identities=6%  Similarity=-0.081  Sum_probs=123.2

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHh
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGI-KPDS----AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKT  181 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~  181 (423)
                      +...+..+...|++++|..++++..+... .|+.    ..+..+...+...|++++|+..|++..+...-.++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            34446778889999999999999887432 2221    13445677777788999999999998862212233    236


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMS----LGIIPS-IP  250 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~  250 (423)
                      |+.+...|...|++++|+..|++..+.     +..+. ..+|..+...|.+.|++++|.+.+++..+    .+..+. ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            888999999999999999999988741     21222 34788889999999999999999987754    333333 56


Q ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 014502          251 ILEKVLEGLCARRK-LDRVKSFLKFLLG  277 (423)
Q Consensus       251 ~~~~li~~~~~~g~-~~~a~~~~~~~~~  277 (423)
                      +|..+...+.+.|+ +++|.+.+++...
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            78888889999994 6999998888754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.76  E-value=2.8e-05  Score=73.40  Aligned_cols=356  Identities=8%  Similarity=-0.056  Sum_probs=210.5

Q ss_pred             cHHHHHHHhcCCchhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCC-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHH
Q 014502           40 SNPLISRLLQVPVSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIAL  117 (423)
Q Consensus        40 ~~~ll~~l~~~~~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~-~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~  117 (423)
                      |...+..+-.....++..+|+....  ..|++..|...+.. .+.+. .+....+|+..+..+ ....++...|...+..
T Consensus        18 yer~l~~~P~~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v-g~d~~s~~iW~~Yi~f   94 (493)
T 2uy1_A           18 MEHARRLYMSKDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF-ENYWDSYGLYKEYIEE   94 (493)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS-TTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHH
Confidence            3344433333335566788887765  34788899999988 44442 344555543333221 1134577888888887


Q ss_pred             Hhc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHHHhcCCCCCCHH
Q 014502          118 SGK----VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC-------------SGDVVTALSLFEIMVSSEEYKPNSK  180 (423)
Q Consensus       118 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~~~~~p~~~  180 (423)
                      +..    .++++.+.++|++.......--...|......-..             .+.+..|..+++++.... -..+..
T Consensus        95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~-~~~s~~  173 (493)
T 2uy1_A           95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI-RGWSVK  173 (493)
T ss_dssp             TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSHH
T ss_pred             HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH-hhccHH
Confidence            653    46788999999999874322112233333221111             123334455555444310 001334


Q ss_pred             hHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          181 TYDAFISGFSSLG--N-----VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE  253 (423)
Q Consensus       181 ~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  253 (423)
                      .|...+..-...+  -     .+.+..+|++...... -+...|...+.-+.+.|+.++|.++|++....   |+...+.
T Consensus       174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~  249 (493)
T 2uy1_A          174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS  249 (493)
T ss_dssp             HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred             HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence            5655555433221  1     3456788999887643 36788888888889999999999999999877   4433221


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC---------C---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502          254 KVLEGLCARRKLDRVKSFLKFLLGG---------G---WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       254 ~li~~~~~~g~~~~a~~~~~~~~~~---------g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                      .   .|....+.++.   ++.+.+.         +   ......+|...+..+.+.++.+.|..+|+.. ... ..+...
T Consensus       250 ~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v  321 (493)
T 2uy1_A          250 L---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHV  321 (493)
T ss_dssp             H---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHH
T ss_pred             H---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHH
Confidence            1   22222222222   2222211         0   0111245667777777788899999999999 321 122222


Q ss_pred             HHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHH
Q 014502          322 HFFSGIIRLYAL-SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAG  400 (423)
Q Consensus       322 ~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  400 (423)
                        |......-.. .++.+.|..+|+...+..  |.++..+...+....+.|+.+.+..+++...    .....|...+..
T Consensus       322 --~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~f  393 (493)
T 2uy1_A          322 --FIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEY  393 (493)
T ss_dssp             --HHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence              4322222222 336999999999998753  4567777777777777888765555544442    256778888888


Q ss_pred             HHhcCChhHHHHHHHHHHh
Q 014502          401 YRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       401 ~~~~g~~~~a~~~~~~m~~  419 (423)
                      -...|+.+.+.++++++.+
T Consensus       394 E~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          394 EFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHSCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            8888999999998888763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.75  E-value=2.7e-06  Score=74.63  Aligned_cols=168  Identities=7%  Similarity=-0.039  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 014502          144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGF---SVN--V  214 (423)
Q Consensus       144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~  214 (423)
                      ..+...+..+...|++++|.+.+++..+.....++.    ..+..+...+...|++++|++.+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            344555666777788888887777766521111111    1233344555666777777777777664311   111  3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CccC-
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMS---L-GIIP--SIPILEKVLEGLCARRKLDRVKSFLKFLLGGG----WKIN-  283 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~-  283 (423)
                      .+|+.+...|...|++++|...|++..+   . +..+  ...++..+...|...|++++|...+++..+..    .... 
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4666777777777777777777776652   1 1111  11456666666677777777777776655421    1111 


Q ss_pred             HHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014502          284 ENMAQKLVKCYCELGRVDEL-EEQLETLT  311 (423)
Q Consensus       284 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~  311 (423)
                      ..+|..+..+|.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            34566666666667777666 55555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.74  E-value=9.1e-07  Score=73.42  Aligned_cols=125  Identities=12%  Similarity=0.007  Sum_probs=63.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          148 SLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA  227 (423)
Q Consensus       148 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  227 (423)
                      .+...+...|++++|+..|++..     .|+...|..+...+.+.|++++|++.|++..+... .+...|..+...|.+.
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence            34444455555555555555442     23445555555555555555555555555554432 2444555555555555


Q ss_pred             CCHHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          228 RDFDSVDRFYEEMMSLGI--------------IPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG  278 (423)
Q Consensus       228 g~~~~a~~~~~~m~~~~~--------------~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  278 (423)
                      |++++|.+.|++..+...              .|+ ...+..+...+...|++++|...+++..+.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            555555555555544321              111 134555555555566666666666655553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.73  E-value=1.6e-06  Score=71.84  Aligned_cols=129  Identities=9%  Similarity=-0.098  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      .+..+...+...|++++|.+.|++..    .|+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34456677778888888888888763    5677888888888888888888888888887654 345677888888888


Q ss_pred             hcCCHHHHHHHHHHHHhCCCc--------------c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          261 ARRKLDRVKSFLKFLLGGGWK--------------I-NENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      ..|++++|.+.+++..+..-.              | ....+..+..+|.+.|++++|...++...+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            888888888888888774311              1 12567777788888888888888888887743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.69  E-value=1e-06  Score=77.99  Aligned_cols=200  Identities=9%  Similarity=-0.028  Sum_probs=139.4

Q ss_pred             cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccC
Q 014502           83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLICACLCSG  157 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g  157 (423)
                      .+++++|...|    .+              ....|...|++++|...|.+..+.    |-.+ -..+|+.+..+|...|
T Consensus        29 ~~~~~~A~~~~----~~--------------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g   90 (307)
T 2ifu_A           29 KPDYDSAASEY----AK--------------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ   90 (307)
T ss_dssp             SCCHHHHHHHH----HH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHH----HH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence            47788888884    32              245677889999999998887653    1111 1347888899999999


Q ss_pred             CHHHHHHHHHHHHhc---CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcC
Q 014502          158 DVVTALSLFEIMVSS---EEYKP-NSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFS---V--NVQTYESLIHGSLKAR  228 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g  228 (423)
                      ++++|+..|++..+.   .|-.. -..+++.+...|.. |++++|++.|++..+....   +  ...+++.+...|.+.|
T Consensus        91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  169 (307)
T 2ifu_A           91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ  169 (307)
T ss_dssp             CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence            999999999876541   11111 13577888888888 9999999999987753111   1  1467888899999999


Q ss_pred             CHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC------HHhHHHHHHHHHhc
Q 014502          229 DFDSVDRFYEEMMSL----GIIPS-IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN------ENMAQKLVKCYCEL  297 (423)
Q Consensus       229 ~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~  297 (423)
                      ++++|++.|++..+.    +..+. ...+..+...+...|++++|...+++.. .  .|+      ......++.++ ..
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~  245 (307)
T 2ifu_A          170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DE  245 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HT
T ss_pred             CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-Hh
Confidence            999999999988652    22222 2256666777788899999999999988 4  232      12344455544 46


Q ss_pred             CCHHHHHH
Q 014502          298 GRVDELEE  305 (423)
Q Consensus       298 g~~~~a~~  305 (423)
                      |+.+.+.+
T Consensus       246 ~d~~~~~~  253 (307)
T 2ifu_A          246 QDEEQLLR  253 (307)
T ss_dssp             TCHHHHHH
T ss_pred             cCHHHHHH
Confidence            66655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.67  E-value=1.8e-05  Score=70.15  Aligned_cols=113  Identities=5%  Similarity=-0.067  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc-
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR-------LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY-  373 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~-  373 (423)
                      ++.+.++++.+.+  |..... |+.....+.+.++       ++++++.+++...  ..|.+...|+.+-..+.+.|.. 
T Consensus       185 eELe~~~k~I~~d--p~N~SA-W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~  259 (349)
T 3q7a_A          185 SELDWCNEMLRVD--GRNNSA-WGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPL  259 (349)
T ss_dssp             HHHHHHHHHHHHC--TTCHHH-HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhC--CCCHHH-HHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCc
Confidence            5666666666533  332222 5555555555554       4666666666665  3455667776665555554443 


Q ss_pred             -------------------chHH-HHHHHHhCC-----CcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          374 -------------------DRLD-LFLDHIKGS-----YKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       374 -------------------~~~~-~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                                         ..+. ...+....+     ..++......+++.|...|+.++|.++++.+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence                               1111 111111111     134567788888888888888888888888753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=4.5e-06  Score=73.20  Aligned_cols=167  Identities=6%  Similarity=-0.092  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CCC--HH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEY--KPN--SK  180 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~--~~  180 (423)
                      .+...+..+...|++++|.+.+++..+.....+     ...+..+...+...|++++|+..+++..+...-  .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344455666777777777777776665422211     122344556667777788887777776641111  111  34


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-H
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIA---A-GFSV--NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPS-I  249 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~  249 (423)
                      +|+.+...|...|++++|...|++..+   . +-.+  ...+|+.+...|.+.|++++|++.+++..+.    +.... .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            677777777778888888877777652   2 1111  1246777777788888888888877766432    21111 4


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014502          250 PILEKVLEGLCARRKLDRV-KSFLKFLL  276 (423)
Q Consensus       250 ~~~~~li~~~~~~g~~~~a-~~~~~~~~  276 (423)
                      .+|..+...|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5677777777788888877 66666654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=8.4e-07  Score=72.90  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +..+...+...|++++|...+++..+.   ...+.....++..+...+...|++++|.+.+++..+
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            444455555555555555555554321   111111122244555556666666666665555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.63  E-value=1.8e-06  Score=68.25  Aligned_cols=128  Identities=13%  Similarity=0.016  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 014502          109 DEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG  188 (423)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  188 (423)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.  .+.+...+..+..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            345555555666666666666666655542 224555666666666666666666666665542  12334455555566


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 014502          189 FSSLGNVDAMNKWYAANIAAGFSVNVQTYES--LIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       189 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m  240 (423)
                      +...|++++|.+.|++..+.... +...+..  ....+.+.|++++|++.+...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66666666666666665554322 3333322  222244555666665555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.62  E-value=1.2e-06  Score=66.05  Aligned_cols=106  Identities=7%  Similarity=-0.006  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      +......|.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|...+++..+.  .|+.... |..+..+|
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~   91 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKG-YIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHH-HHHHHHHH
Confidence            4444445555555555555555554432 223445555555555555555555555555552  2332221 55555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          332 ALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      ...|++++|.+.|++..+  +.|.++..+..+
T Consensus        92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l  121 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGV  121 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence            555555555555555555  334444444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.61  E-value=2.6e-06  Score=67.25  Aligned_cols=90  Identities=12%  Similarity=0.020  Sum_probs=35.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                      +...+...|++++|...|++..+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus        19 ~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~   96 (166)
T 1a17_A           19 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   96 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence            333344444444444444444333211 33334444444444444444444444433321 1223333333334444444


Q ss_pred             HHHHHHHHHHHH
Q 014502          265 LDRVKSFLKFLL  276 (423)
Q Consensus       265 ~~~a~~~~~~~~  276 (423)
                      +++|...+++..
T Consensus        97 ~~~A~~~~~~a~  108 (166)
T 1a17_A           97 FRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=2.5e-06  Score=63.54  Aligned_cols=94  Identities=16%  Similarity=0.273  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      .|..+...+...|++++|.+.|+++.+.  .+.+..++..+...+...|++++|..+++++.+... .+..++..+...|
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence            3333444444444444444444444331  112233333344444444444444444444433321 1333334444444


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 014502          225 LKARDFDSVDRFYEEMM  241 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~  241 (423)
                      .+.|++++|.+.|+++.
T Consensus        88 ~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHH
Confidence            44444444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=3.2e-06  Score=62.92  Aligned_cols=96  Identities=13%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL  259 (423)
Q Consensus       180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  259 (423)
                      ..+..+...+...|++++|.++++++.+... .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            3455555555666666666666665555432 244555555555555666666666555554432 22344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 014502          260 CARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       260 ~~~g~~~~a~~~~~~~~~  277 (423)
                      ...|++++|...++++.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            555555555555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.59  E-value=2.1e-07  Score=81.28  Aligned_cols=194  Identities=7%  Similarity=-0.041  Sum_probs=91.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      +...+..+...+...|++++|+..|++..+..  +.+...|..+..++.+.|++++|++.+++..+.... +...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            34455555556666666666666666655421  224455555666666666666666666665554322 455566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSI-PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      .+|...|++++|...|++..+.+  |+. ..+...+....+   ..... -+........+.+......+...  ..|++
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~  151 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAER  151 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence            66666666666666666554321  100 000001111110   01111 11112222233333333333221  24666


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-DRLDDVEYSVGRMGK  349 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~  349 (423)
                      ++|.+.++...+.  .|+.... ...+-..+.+. +.+++|.++|.+..+
T Consensus       152 ~~A~~~~~~al~~--~p~~~~~-~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          152 ERELEECQRNHEG--HEDDGHI-RAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHTTTSGGGTT--TSCHHHH-THHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhhhcc--ccchhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777766666553  3443321 23333334433 556677777766654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.56  E-value=8.7e-07  Score=72.79  Aligned_cols=156  Identities=11%  Similarity=-0.050  Sum_probs=87.0

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCC
Q 014502          155 CSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARD  229 (423)
Q Consensus       155 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~  229 (423)
                      ..|++++|.++++....  .......++..+...+...|++++|...+++....    +.. ....++..+...|...|+
T Consensus         4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            45666666664444332  11123445555666666666666666666655541    111 123455666666777777


Q ss_pred             HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcC
Q 014502          230 FDSVDRFYEEMMSL----GIIP--SIPILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELG  298 (423)
Q Consensus       230 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g  298 (423)
                      +++|.+.+++..+.    +-.|  ....+..+...+...|++++|...+++..+.    +... -..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777776665432    1111  1234566666677777777777777766532    1111 1224566777788888


Q ss_pred             CHHHHHHHHHHHHh
Q 014502          299 RVDELEEQLETLTK  312 (423)
Q Consensus       299 ~~~~a~~~~~~~~~  312 (423)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.56  E-value=6.4e-05  Score=66.63  Aligned_cols=172  Identities=9%  Similarity=0.044  Sum_probs=115.6

Q ss_pred             cCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-CH
Q 014502           83 SSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQ-NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCS-G-DV  159 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~  159 (423)
                      .+..++|++.    ++++...++.+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++... + ++
T Consensus        67 ~e~se~AL~l----t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           67 EEKSERALEL----TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             TCCSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCCHHHHHH----HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence            3344678888    67777777777888888777777777 588999999998887543 677888877777766 6 78


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVD--------AMNKWYAANIAAGFSVNVQTYESLIHGSLKARD--  229 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--  229 (423)
                      ++++++++++.+.  -+.|..+|+.-.-.+.+.+.++        ++++.++++.+..+. |...|+.....+.+.+.  
T Consensus       142 ~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          142 VSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             HHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence            8888888888762  2445566655444444444444        778888888777644 77777777666666665  


Q ss_pred             -----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          230 -----FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR  263 (423)
Q Consensus       230 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  263 (423)
                           ++++++.+++..... +-|...|+-+-..+.+.|
T Consensus       219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence                 566777666666543 334555554444444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.55  E-value=0.00016  Score=68.11  Aligned_cols=324  Identities=9%  Similarity=-0.055  Sum_probs=191.6

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC-hhHHHHHHHHHHHC-CCC-CCHHHHHH
Q 014502           72 FSWDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN-VPFAMHVFTSMEAQ-GIK-PDSAVFNS  148 (423)
Q Consensus        72 ~~~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-g~~-p~~~~~~~  148 (423)
                      ..|...+..+-.++++.+..+|    ++-.. ..|+...|...+....+.++ .+....+|+..... |.. .+...|..
T Consensus        16 ~vyer~l~~~P~~~~e~~~~if----eral~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~   90 (493)
T 2uy1_A           16 AIMEHARRLYMSKDYRSLESLF----GRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE   90 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH----HHHST-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHH----HHHhc-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence            3444444444448899999995    44444 34799999888888777663 45677788877653 543 36788988


Q ss_pred             HHHHHHc----cCCHHHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCC
Q 014502          149 LICACLC----SGDVVTALSLFEIMVSSEEYKPN--SKTYDAFISGFSS-------------LGNVDAMNKWYAANIAAG  209 (423)
Q Consensus       149 li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~-------------~~~~~~a~~~~~~m~~~~  209 (423)
                      .+..+..    .++.+.+.++|++... .  ++.  ...|......-..             .+.+..|..+++++...-
T Consensus        91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~  167 (493)
T 2uy1_A           91 YIEEEGKIEDEQTRIEKIRNGYMRALQ-T--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI  167 (493)
T ss_dssp             HHHHTSSCSSHHHHHHHHHHHHHHHHT-S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHh-C--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8876543    4678889999999986 2  222  1223222221111             112233444444443210


Q ss_pred             CCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc
Q 014502          210 FSVNVQTYESLIHGSLKAR--D-----FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI  282 (423)
Q Consensus       210 ~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~  282 (423)
                      ...+...|...+.--...+  -     .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..++++....  +.
T Consensus       168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~  244 (493)
T 2uy1_A          168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD  244 (493)
T ss_dssp             HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred             hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence            0113445655555432221  1     345678899887743 455778888888888999999999999999987  33


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 014502          283 NENMAQKLVKCYCELGRVDELEEQLETLTKCN----------QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  352 (423)
                      +...+.    .|+...+.++.   ++.+.+.-          ..+.....+|...+..+.+.+..+.|..+|++. ..  
T Consensus       245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--  314 (493)
T 2uy1_A          245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--  314 (493)
T ss_dssp             SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--
T ss_pred             cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--
Confidence            333332    23332222222   22222210          012222334777788777888999999999998 32  


Q ss_pred             CCCChHhHHHHHHHHhhcc-ccc-hHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          353 SFKSAEDVEMVICSYFRCA-AYD-RLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEM  417 (423)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  417 (423)
                      .+.+...|...+..-...+ +.+ +..++...+.. ++-++..+...++...+.|+.+.|..+|+..
T Consensus       315 ~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          315 EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            1123555543332222233 465 45566555553 3334556777888888999999999988874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.54  E-value=3.7e-06  Score=63.36  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=34.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      +......|.+.|++++|++.|++..+.  -+.+...|..+..++.+.|++++|++.|++..+.... +...|..+..+|.
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            333333444444444444444443331  0122333333334444444444444444443333211 2333333333444


Q ss_pred             hcCCHHHHHHHHHHH
Q 014502          226 KARDFDSVDRFYEEM  240 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m  240 (423)
                      ..|++++|++.|++.
T Consensus        93 ~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           93 AMREWSKAQRAYEDA  107 (126)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            444444444444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.53  E-value=3.4e-06  Score=72.29  Aligned_cols=126  Identities=7%  Similarity=-0.131  Sum_probs=55.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcC
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN--ENMAQKLVKCYCELG  298 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g  298 (423)
                      ...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..++...... .|.  ...+..+..++...|
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG  185 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA  185 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence            334444555555555554444322  322233333334445555555555554332211 010  123444455555555


Q ss_pred             CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ++++|.+.|++.......|............++.+.|+.++|...|+++..
T Consensus       186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555555432221332221133344445555555555555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=2.9e-06  Score=64.12  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIM  169 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m  169 (423)
                      .|..+...+...|++++|...|++.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~a   42 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEA   42 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333333333444444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.53  E-value=4e-06  Score=62.96  Aligned_cols=24  Identities=4%  Similarity=-0.004  Sum_probs=9.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIM  169 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m  169 (423)
                      +..+...+...|++++|...|++.
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~   38 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKA   38 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHH
Confidence            333333333334444444443333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.53  E-value=3.8e-06  Score=63.15  Aligned_cols=119  Identities=18%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.  .+.+...+..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence            34455555566666666666666666655542 224555555556666666666666666655541  122344555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD  229 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  229 (423)
                      ..+...|++++|.+.|++..+.... +...+..+...+.+.|+
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            5555566666666666555554321 44444445455544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=7.4e-07  Score=77.75  Aligned_cols=195  Identities=8%  Similarity=-0.049  Sum_probs=128.2

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.  -+.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            45677888888999999999999999988763 227788899999999999999999999998762  234567888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .++...|++++|.+.|++..+.... +...+...+....+.   .++. -+..........+......+ ..+ ..|+.+
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~  152 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERE  152 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence            9999999999999999887764211 111111111111111   1111 12223333334444443333 222 368888


Q ss_pred             HHHHHHHHHHhCCCccCHH-hHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 014502          267 RVKSFLKFLLGGGWKINEN-MAQKLVKCYCEL-GRVDELEEQLETLTKC  313 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~-g~~~~a~~~~~~~~~~  313 (423)
                      +|.+.+++..+.  .|+.. ....+-..+.+. +.+++|.++|.++.+.
T Consensus       153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            998888887764  45443 334444445554 6688899999887653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.52  E-value=3.3e-06  Score=63.83  Aligned_cols=119  Identities=10%  Similarity=-0.011  Sum_probs=85.2

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      .+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.  .+.+...+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l   90 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK   90 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence            356777888888888888888888888887653 226677888888888888888888888887762  13356677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKAR  228 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  228 (423)
                      ..++.+.|++++|.+.|++..+.... +...+..+...+.+.|
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence            78888888888888888887765322 3455555555555444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.49  E-value=3.4e-06  Score=65.74  Aligned_cols=95  Identities=12%  Similarity=0.073  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      .+..+...+.+.|++++|+..|++.....  +.+...|..+..+|...|++++|+..|++..+..+. +...|..+..+|
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            45555555555555555555555555421  223445555555555555555555555555554322 444555555555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 014502          225 LKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~  242 (423)
                      .+.|++++|.+.|++..+
T Consensus       115 ~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.49  E-value=1.1e-06  Score=68.64  Aligned_cols=102  Identities=9%  Similarity=-0.062  Sum_probs=86.0

Q ss_pred             CCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHH
Q 014502          105 ESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDA  184 (423)
Q Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  184 (423)
                      +.+...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|+..|++..+..  +-+...|..
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~  109 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFH  109 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHH
Confidence            3467788888899999999999999999998864 2367889999999999999999999999998732  335678888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAG  209 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~  209 (423)
                      +..+|.+.|++++|.+.|++..+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999988864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.48  E-value=1.2e-06  Score=70.49  Aligned_cols=118  Identities=11%  Similarity=0.011  Sum_probs=50.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEG-LCARRKL--DRV  268 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~a  268 (423)
                      .|++++|...+++..+... .+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            3444444444444443321 133444444444444455555555444444322 1223334444444 3344444  455


Q ss_pred             HHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          269 KSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       269 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      ...+++..+.. +.+...+..+...|...|++++|...++++.+
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            55554444432 12234444444455555555555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.47  E-value=2.2e-06  Score=68.86  Aligned_cols=119  Identities=11%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH-HHhcCCH--H
Q 014502          120 KVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISG-FSSLGNV--D  196 (423)
Q Consensus       120 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~--~  196 (423)
                      ..|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..  +.+...+..+..+ +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence            4455555555555544432 1244455555555555555555555555554311  1233344444444 4444554  5


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          197 AMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       197 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      +|.+.+++..+.... +...+..+...|...|++++|...|++..+
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            555555555444321 344444444455555555555555554444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.45  E-value=4.9e-06  Score=74.57  Aligned_cols=124  Identities=9%  Similarity=-0.117  Sum_probs=68.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD--------------SAVFNSLICACLCSGDVVTALSLFEIMVSS  172 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  172 (423)
                      +...+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445566666666666666666666666665422111              345555556666666666666666655542


Q ss_pred             CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014502          173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSV  233 (423)
Q Consensus       173 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  233 (423)
                        -+.+...|..+..+|...|++++|+..|++..+.... +...+..+...+.+.|++++|
T Consensus       226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence              1224445555555566666666666666655554322 444555555555555555555

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=4.4e-06  Score=74.86  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      +...|..+...|.+.|++++|+..|++..+.   .|+...+           ..+.+.++-        ......|..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla  203 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSF-----------SNEEAQKAQ--------ALRLASHLNLA  203 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCC-----------CSHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccC-----------ChHHHHHHH--------HHHHHHHHHHH
Confidence            3456666777777777777777777776652   2322000           000000000        00023444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      .+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555444432 2234444445555555555555555555554432 123344444555555555555


Q ss_pred             HH
Q 014502          302 EL  303 (423)
Q Consensus       302 ~a  303 (423)
                      +|
T Consensus       282 ~a  283 (336)
T 1p5q_A          282 AR  283 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.42  E-value=0.00023  Score=62.79  Aligned_cols=138  Identities=11%  Similarity=0.034  Sum_probs=81.0

Q ss_pred             hcCCHH-HHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502           82 QSSSPK-KAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN----------VPFAMHVFTSMEAQGIKPDSAVFNSLI  150 (423)
Q Consensus        82 ~~~~~~-~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li  150 (423)
                      +.|.+. +|+..    .+.+...++.+..+|+.--..+...+.          +++++.+++.+.....+ +..+|+.-.
T Consensus        41 ~~~e~s~eaL~~----t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~  115 (331)
T 3dss_A           41 QAGELDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC  115 (331)
T ss_dssp             HTTCCSHHHHHH----HHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HcCCCCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            445443 66776    566666666666666654444433322          56677777776665322 666777666


Q ss_pred             HHHHccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014502          151 CACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN-VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA  227 (423)
Q Consensus       151 ~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  227 (423)
                      ..+...|  .+++++.+++.+.+..  +-|...|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence            6666666  3677777777776522  3455556555555555666 46777777777766543 666666555444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=2.1e-05  Score=72.92  Aligned_cols=197  Identities=10%  Similarity=-0.079  Sum_probs=96.7

Q ss_pred             HHHhcCCChhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCH
Q 014502          116 ALSGKVQNVPFAMHVFTSMEAQGIKPDS----------------AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNS  179 (423)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  179 (423)
                      ..+.+.|++++|.+.|..+.+.......                ..+..+...|...|++++|.+.+.+.....+..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            4455666777777777666654322110                124556666666666666666666554421111111


Q ss_pred             H----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--C
Q 014502          180 K----TYDAFISGFSSLGNVDAMNKWYAANIAA----GFSVN-VQTYESLIHGSLKARDFDSVDRFYEEMMSL--GI--I  246 (423)
Q Consensus       180 ~----~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~  246 (423)
                      .    +.+.+-..+...|+.++|.+++......    +..+. ..++..+...|...|++++|..++++....  +.  .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence            1    1222223333445666666666554431    21211 334555566666666666666666555331  11  1


Q ss_pred             CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          247 PS-IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       247 p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +. ..++..++..|...|++++|..++++....  .+..+    ...+..+...+...|++++|...|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11 234555556666666666666666555432  11111    12344444455555666666655555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.41  E-value=1.9e-06  Score=67.10  Aligned_cols=94  Identities=9%  Similarity=-0.051  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      +..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++....+  |+.... |..+..+|
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~-~~~lg~~~   99 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRF-PFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHH-HHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchH-HHHHHHHH
Confidence            4444444555555555555555554432 2244445555555555555555555555555422  322211 44455555


Q ss_pred             HhcCChhHHHHHHHHHHh
Q 014502          332 ALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~  349 (423)
                      ...|++++|...|++..+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.40  E-value=1.1e-05  Score=69.23  Aligned_cols=125  Identities=7%  Similarity=-0.102  Sum_probs=53.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh
Q 014502          149 LICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN--VQTYESLIHGSLK  226 (423)
Q Consensus       149 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~  226 (423)
                      ....+...|++++|.++|+.+.. .  .|+....-.+...+.+.+++++|+..|+...... .|.  ...+..+-.++.+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            34444555555555555555543 1  2322233333344555555555555554332211 110  1234444445555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          227 ARDFDSVDRFYEEMMSLGIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       227 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .|++++|+..|++.......|.  .........++.+.|+.++|..+|+++..
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555554442221132  11233333344445555555555555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.38  E-value=1.3e-05  Score=62.36  Aligned_cols=108  Identities=11%  Similarity=-0.010  Sum_probs=66.7

Q ss_pred             HHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC
Q 014502           98 DKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP  177 (423)
Q Consensus        98 ~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p  177 (423)
                      ++.....+.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++.....  +.
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~   87 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX   87 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC
Confidence            33333333455566666666677777777777777666543 2255666666667777777777777777666521  23


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          178 NSKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       178 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      +...+..+..++...|++++|.+.|++..+.
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455666666677777777777777666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.36  E-value=1.7e-05  Score=59.46  Aligned_cols=92  Identities=10%  Similarity=0.068  Sum_probs=36.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL  225 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  225 (423)
                      |......+.+.|++++|+..|++..+.  .+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            333444444444444444444444331  1122333444444444444444444444444433211 2333444444444


Q ss_pred             hcCCHHHHHHHHHHH
Q 014502          226 KARDFDSVDRFYEEM  240 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m  240 (423)
                      ..|++++|.+.|++.
T Consensus        84 ~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           84 AVKEYASALETLDAA   98 (126)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHH
Confidence            444444444444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=3e-05  Score=56.83  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=9.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIM  169 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m  169 (423)
                      +..+...+...|++++|...|++.
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~   30 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEA   30 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHH
Confidence            333333334444444444444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=0.00024  Score=65.68  Aligned_cols=193  Identities=7%  Similarity=-0.129  Sum_probs=138.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCC--C---------------HhHHHHHHHHHhcCCChhHHHHHHHHHHHCC-CCCC
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNES--C---------------LDEYACLIALSGKVQNVPFAMHVFTSMEAQG-IKPD  142 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~--~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~  142 (423)
                      .+.|++.+|.+.|.    +..+....  +               ..++..+...|.+.|++++|.+.+..+...- -.++
T Consensus        15 ~~~~~y~eA~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYL----SLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHTCHHHHHHHHH----HHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHCCCHHHHHHHHH----HHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            68999999999964    44443331  1               1247889999999999999999998876531 1112


Q ss_pred             H----HHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-
Q 014502          143 S----AVFNSLICACLCSGDVVTALSLFEIMVSS---EEYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFS-  211 (423)
Q Consensus       143 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~-  211 (423)
                      .    .+.+.+-..+...|++++|..++++....   .+..+. ..++..+...+...|++++|..++++....  +.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    12333444455678999999999887541   222333 457788899999999999999999987754  211 


Q ss_pred             -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          212 -V-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPS--IPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       212 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                       + ...+|..++..|...|++++|...+++....    +..+.  ...+..+...+...|++++|...+.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             1 2457888899999999999999999887542    21222  23466666777888999999998887754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=3e-05  Score=56.87  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGF  189 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  189 (423)
                      .+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.  .+.+...+..+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            34444444445555555555555444432 113444444444444445555555444444431  112233444444444


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIA  207 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~  207 (423)
                      ...|++++|.+.+++..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            444444444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.34  E-value=9.2e-07  Score=72.63  Aligned_cols=27  Identities=4%  Similarity=-0.001  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      .+..+...+...|++++|+..|++..+
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~   66 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALD   66 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444455555555555556555555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.34  E-value=0.00054  Score=60.39  Aligned_cols=232  Identities=9%  Similarity=-0.066  Sum_probs=152.2

Q ss_pred             hcCCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          119 GKVQNVP-FAMHVFTSMEAQGIKPDSAVFNSLICACLCSGD----------VVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       119 ~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      .+.|.+. +|+++++.+...... +..+|+.--..+...+.          +++++.+++.+...  -+-+..+|+.-.-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            3556655 789999999986422 45567665444444333          67888999988863  2456677777776


Q ss_pred             HHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 014502          188 GFSSLG--NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD-FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR--  262 (423)
Q Consensus       188 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--  262 (423)
                      .+.+.+  .+++++.+++.+.+.... |-.+|+--.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.  
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence            777777  489999999999988644 88888877777777888 589999999998765 45666777665555444  


Q ss_pred             ------------CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCch
Q 014502          263 ------------RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCEL-----------GRVDELEEQLETLTKCNQSPEV  319 (423)
Q Consensus       263 ------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~  319 (423)
                                  +.++++++.+....... +-|...|+-+-..+.+.           +.++++.+.++++.+  ..|+.
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~  271 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN  271 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence                        34677888888887753 44666776554444444           346777788888777  44654


Q ss_pred             HHHHHHHHHHH-----HHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          320 LLHFFSGIIRL-----YALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       320 ~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      .   |+.+-.+     ....|..+++...+.++.+  +.|-...-|.-+
T Consensus       272 ~---w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~  315 (331)
T 3dss_A          272 K---WCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL  315 (331)
T ss_dssp             H---HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred             c---hHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence            3   3322211     1234556677777777766  434334444333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.34  E-value=1.1e-06  Score=72.06  Aligned_cols=27  Identities=11%  Similarity=0.106  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      .+..+...+.+.|++++|++.|++..+
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~   66 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALD   66 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444455555555555555555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.34  E-value=1.3e-05  Score=60.33  Aligned_cols=58  Identities=14%  Similarity=0.164  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      +..+...+.+.|++++|++.|++..+..+. +...|+.+..+|.+.|++++|++.|++.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            333444444444444444444444443211 3344444444444444444444444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.4e-05  Score=59.96  Aligned_cols=91  Identities=3%  Similarity=-0.061  Sum_probs=39.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS  334 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~  334 (423)
                      ....+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+.+  |+.... |..+..+|...
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~lg~~~~~~   85 (126)
T 3upv_A           10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRA-YIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHH-HHHHHHHHHHH
Confidence            3334444444444444444444321 1233444444444444444444444444444422  322211 44444444455


Q ss_pred             CChhHHHHHHHHHHh
Q 014502          335 DRLDDVEYSVGRMGK  349 (423)
Q Consensus       335 g~~~~a~~~~~~m~~  349 (423)
                      |++++|...|++..+
T Consensus        86 ~~~~~A~~~~~~al~  100 (126)
T 3upv_A           86 KEYASALETLDAART  100 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHH
Confidence            555555555444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.31  E-value=1.6e-05  Score=57.82  Aligned_cols=56  Identities=7%  Similarity=-0.026  Sum_probs=21.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      +...+...|++++|...+++..+.... +...|..+...+...|++++|.+.|++..
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            333333444444444444433333211 23333333333344444444444443333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3.3e-05  Score=59.44  Aligned_cols=96  Identities=14%  Similarity=0.059  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 014502          249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFF  324 (423)
Q Consensus       249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  324 (423)
                      ...+..+...+...|++++|...+++..+.  .|+    ...+..+..+|...|++++|...+++..+.  .|+.... |
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~  102 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA-L  102 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH-H
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH-H
Confidence            344444444555555555555555555543  233    344455555555555555555555555542  2322111 4


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          325 SGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       325 ~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ..+...|...|++++|...|++..+
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4555555566666666666655554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.29  E-value=7.8e-06  Score=62.99  Aligned_cols=99  Identities=14%  Similarity=0.030  Sum_probs=53.0

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++.....  +.+...+..+.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence            44445555555555666666666666555542 1244555555555566666666666665555421  22334455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 014502          187 SGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      .++...|++++|.+.|+...+.
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            5555566666666665555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=1.1e-05  Score=60.58  Aligned_cols=60  Identities=13%  Similarity=0.020  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI  206 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  206 (423)
                      .|..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|...+++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3344444444444444444444444331  12233333344444444444444444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.28  E-value=1.3e-05  Score=58.29  Aligned_cols=98  Identities=12%  Similarity=0.023  Sum_probs=46.0

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC--CHHhHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP--NSKTYDAF  185 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~l  185 (423)
                      ...+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+..  +.  +...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l   82 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAK   82 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHH
Confidence            3344444555555555555555555544432 1234444445555555555555555555544411  11  23444444


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHC
Q 014502          186 ISGFSSL-GNVDAMNKWYAANIAA  208 (423)
Q Consensus       186 i~~~~~~-~~~~~a~~~~~~m~~~  208 (423)
                      ..++.+. |++++|.+.+++....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhc
Confidence            4455555 5555555555544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=5.2e-05  Score=58.27  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          144 AVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYES  219 (423)
Q Consensus       144 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  219 (423)
                      ..+..+...+...|++++|...|++..+   ..|+    ...+..+..++...|++++|++.+++..+.... +...+..
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  104 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence            3444444444444444444444444443   1233    233444444444444444444444444433211 3334444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      +..+|...|++++|.+.|++..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444444444444444444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.26  E-value=1.2e-05  Score=60.51  Aligned_cols=59  Identities=10%  Similarity=0.016  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMV  170 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  170 (423)
                      +..+...+.+.|++++|+..|++..+.. +-+...|+.+..+|...|++++|++.+++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            4444445555555555555555544432 1134444555555555555555555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.25  E-value=1.8e-05  Score=60.95  Aligned_cols=88  Identities=13%  Similarity=-0.038  Sum_probs=35.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      ..+.+.|++++|++.|++....... +...|..+..+|.+.|++++|+..|++..... +.+...+..+..++...|+++
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~  103 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD  103 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence            3344444444444444444433211 33334444444444444444444444443322 112233333444444444444


Q ss_pred             HHHHHHHHHH
Q 014502          267 RVKSFLKFLL  276 (423)
Q Consensus       267 ~a~~~~~~~~  276 (423)
                      +|...++...
T Consensus       104 ~A~~~~~~al  113 (142)
T 2xcb_A          104 GAESGFYSAR  113 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.25  E-value=3.6e-05  Score=58.47  Aligned_cols=19  Identities=5%  Similarity=-0.129  Sum_probs=7.0

Q ss_pred             HHHHHhcCCHHHHHHHHHH
Q 014502          186 ISGFSSLGNVDAMNKWYAA  204 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~  204 (423)
                      ...+...|++++|...|++
T Consensus        16 g~~~~~~~~~~~A~~~~~~   34 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGR   34 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHH
Confidence            3333333333333333333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.24  E-value=3.3e-05  Score=61.04  Aligned_cols=95  Identities=4%  Similarity=-0.126  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLC  260 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  260 (423)
                      .+..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +-+...|..+...+.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4444444555555555555555555444322 44445555555555555555555555554432 223444555555555


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 014502          261 ARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~  277 (423)
                      ..|++++|...+++..+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            55555555555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.23  E-value=1.8e-05  Score=62.60  Aligned_cols=98  Identities=8%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502          213 NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK  292 (423)
Q Consensus       213 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~  292 (423)
                      +...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|...+++.++.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34455555666666666666666666665543 2244555555566666666666666666665542 223455555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 014502          293 CYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       293 ~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +|...|++++|...|++..+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            66666666666666665554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.23  E-value=3.9e-05  Score=58.25  Aligned_cols=97  Identities=6%  Similarity=-0.039  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      +...|..+...+...|++++|+..|++.....  +.+...|..+..++...|++++|...+++..+.... +...|..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            44555555666666666666666666555421  223445555556666666666666666665554322 455555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 014502          222 HGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .+|...|++++|...|++..
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            66666666666666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.20  E-value=2.3e-05  Score=58.68  Aligned_cols=26  Identities=4%  Similarity=0.018  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +..+..+|...|++++|...++...+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33344444444444444444444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.17  E-value=2.3e-05  Score=61.12  Aligned_cols=99  Identities=7%  Similarity=-0.106  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI-NENMAQKLVKCYCELGRVDELEEQLETLTKC---NQSPEVLLH  322 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~  322 (423)
                      ++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...+++..+.   ...+.....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            3444444444555555555555544321    1000 1234455555666666666666666655431   011112222


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          323 FFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       323 ~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+..+...|...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            356666677777777777777766554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.14  E-value=1.8e-05  Score=61.78  Aligned_cols=131  Identities=12%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HH
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIK-PD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SK  180 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~  180 (423)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++..+...-.++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555555566666666666666555432100 01    124555555555566666666655554331000011    22


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAA----GFS-VNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .+..+...+...|++++|.+.+++..+.    +.. ....++..+...+...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3444445555555555555555544322    100 01223344444444455555555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.08  E-value=4.8e-05  Score=56.65  Aligned_cols=59  Identities=2%  Similarity=-0.145  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .|..+..++...|++++|+..|++..+.... +...+..+...|.+.|++++|+..|++.
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           53 AWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333333444444444444444443333211 2333333333444444444444444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.04  E-value=6.1e-05  Score=56.11  Aligned_cols=94  Identities=12%  Similarity=-0.074  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS  190 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  190 (423)
                      +..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..  +-+...+..+..++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            3344444555555555555555555432 1144455555555555555555555555554411  123344445555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 014502          191 SLGNVDAMNKWYAANIA  207 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~  207 (423)
                      ..|++++|+..+++..+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           97 NEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.03  E-value=0.00017  Score=53.89  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=36.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC---HHhHHHHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSI---PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKIN---ENMAQKLVKCY  294 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~  294 (423)
                      ...+.+.|++++|...|++..+... .+.   ..+..+...+...|++++|...+++..+.. +.+   ...+..+..++
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence            3344444555555555554443221 111   233334444444444444444444444321 111   22333344444


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 014502          295 CELGRVDELEEQLETLTK  312 (423)
Q Consensus       295 ~~~g~~~~a~~~~~~~~~  312 (423)
                      ...|++++|...|+.+.+
T Consensus        87 ~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            444444444444444443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.00  E-value=1.3e-05  Score=59.38  Aligned_cols=85  Identities=12%  Similarity=-0.060  Sum_probs=46.9

Q ss_pred             cCCHHHHHHHHHHHHhCC--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502          262 RRKLDRVKSFLKFLLGGG--WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       262 ~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      .|++++|...+++.++.+  -+.+...+..+..+|...|++++|...|++..+..  |+.... +..+..+|...|++++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQAL-RVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHH-HHHHHHHHHHcCCHHH
Confidence            455666666666666543  12234455566666666666666666666666532  333222 5556666666666666


Q ss_pred             HHHHHHHHHh
Q 014502          340 VEYSVGRMGK  349 (423)
Q Consensus       340 a~~~~~~m~~  349 (423)
                      |...+++..+
T Consensus        80 A~~~~~~al~   89 (117)
T 3k9i_A           80 GVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666655

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.98  E-value=0.00037  Score=52.03  Aligned_cols=89  Identities=10%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPNS----KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVN---VQTYESLIH  222 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~  222 (423)
                      ...+...|++++|...|++..+.   .|+.    ..+..+..++.+.|++++|...|++..+.... +   ...+..+..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            34444455555555555554431   1221    23334444444555555555555544443211 1   333444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 014502          223 GSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~  242 (423)
                      ++.+.|++++|...|++..+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            44444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.97  E-value=3.2e-05  Score=72.72  Aligned_cols=123  Identities=13%  Similarity=0.003  Sum_probs=87.7

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      ..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.  -+.+..+|..+..+|.+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            334445667888888888888887763 225778888888888889999999888888872  23356678888888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014502          192 LGNVDAMNKWYAANIAAGFSVNVQTYESLIHG--SLKARDFDSVDRFYE  238 (423)
Q Consensus       192 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  238 (423)
                      .|++++|++.|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999998888776432 34445555544  778888888888887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.96  E-value=0.00014  Score=67.93  Aligned_cols=89  Identities=13%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC  293 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  293 (423)
                      ...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~  394 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3455555666666666666666666655533 2234555555556666666666666666655532 1233345555555


Q ss_pred             HHhcCCHHHHH
Q 014502          294 YCELGRVDELE  304 (423)
Q Consensus       294 ~~~~g~~~~a~  304 (423)
                      +.+.++.+++.
T Consensus       395 ~~~~~~~~~a~  405 (457)
T 1kt0_A          395 QKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.96  E-value=3.6e-05  Score=72.38  Aligned_cols=118  Identities=12%  Similarity=0.036  Sum_probs=60.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR  267 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  267 (423)
                      .+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            344555566666666555554322 45555556666666666666666666655543 2234555555666666666666


Q ss_pred             HHHHHHHHHhCCCccCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 014502          268 VKSFLKFLLGGGWKINENMAQKLVKC--YCELGRVDELEEQLE  308 (423)
Q Consensus       268 a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  308 (423)
                      |.+.+++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666666655532 1122233333333  555666666666666

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.92  E-value=0.00019  Score=56.34  Aligned_cols=62  Identities=21%  Similarity=0.207  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            345555555555555555555555554432 22344555555555555555555555555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.91  E-value=0.00016  Score=65.54  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAAG--------------F-SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGII  246 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  246 (423)
                      +..+...+.+.|++++|++.|++..+.-              . ..+...|..+..+|.+.|++++|++.+++..+.. +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence            4444555555555555555555554310              0 1123444555555555555555555555554432 1


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHH
Q 014502          247 PSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDE  302 (423)
Q Consensus       247 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  302 (423)
                      .+...|..+..+|...|++++|.+.+++..+.. +.+...+..+...+...++.++
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            234445555555555555555555555554431 1133344444444444444333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.91  E-value=1.8e-05  Score=58.54  Aligned_cols=84  Identities=14%  Similarity=0.074  Sum_probs=35.4

Q ss_pred             CChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 014502          122 QNVPFAMHVFTSMEAQGI--KPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMN  199 (423)
Q Consensus       122 ~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  199 (423)
                      |++++|+..|++..+.+.  +.+...+..+..+|...|++++|+..|++..+.  .+-+...+..+..++.+.|++++|+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence            444444444444444320  112234444444444555555555555444431  1122334444444445555555555


Q ss_pred             HHHHHHHH
Q 014502          200 KWYAANIA  207 (423)
Q Consensus       200 ~~~~~m~~  207 (423)
                      +.+++...
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.90  E-value=0.00021  Score=66.80  Aligned_cols=124  Identities=9%  Similarity=0.008  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS--------------IPILEKVLEGLCARRKLDRVKSFLKFLLGGG  279 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g  279 (423)
                      ...|..+...|.+.|++++|+..|++..+......              ...|..+..+|.+.|++++|...+++.++..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            33455555666666666666666666554211100              3556666667777777777777777776643


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHH
Q 014502          280 WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVE  341 (423)
Q Consensus       280 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~  341 (423)
                       +.+...|..+..+|...|++++|...|+++.+.  .|+.... +..+...+...++.+++.
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a-~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAA-RLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CH-HHHHHHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence             234556666667777777777777777776663  3433322 566666666666665554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.86  E-value=0.00017  Score=56.60  Aligned_cols=97  Identities=15%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSL-------GI----------IPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ..+......+.+.|++++|+..|++....       +-          +.+...|..+..+|.+.|++++|...+++.++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34455556666666666666666665432       00          01123444444555555555555555555554


Q ss_pred             CCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          278 GGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       278 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      .. +.+...|..+..+|...|++++|...|++..+
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            32 22344444555555555555555555555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.83  E-value=0.00028  Score=63.94  Aligned_cols=85  Identities=5%  Similarity=-0.046  Sum_probs=56.4

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      ..+|..+..+|.+.|++++|...+++..+.  .|+.... |..+..+|...|++++|.+.|++..+  +.|.++..+..+
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l  347 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKA-LYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHH-HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            456666777777777777777777777763  3443322 66677777777777777777777776  345556666666


Q ss_pred             HHHHhhcccc
Q 014502          364 ICSYFRCAAY  373 (423)
Q Consensus       364 ~~~~~~~~~~  373 (423)
                      ...+...++.
T Consensus       348 ~~~~~~~~~~  357 (370)
T 1ihg_A          348 LKVKQKIKAQ  357 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.82  E-value=0.002  Score=61.80  Aligned_cols=171  Identities=9%  Similarity=-0.147  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 014502          195 VDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARD----------FDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR-  263 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-  263 (423)
                      -++|++.++++...... +..+|+.--..+.+.|+          ++++++.++.+.+.. +-+..+|+.-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            35566666666665433 44555554444444444          677777777766543 234455665555566666 


Q ss_pred             -CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhc-------
Q 014502          264 -KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG-RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALS-------  334 (423)
Q Consensus       264 -~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-------  334 (423)
                       +++++.+.++++.+.. +-+..+|+.-...+.+.| .++++.+.++++.+.+  |..... |+.....+.+.       
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~sa-W~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSS-WHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHH-HHHHHHHHHHHSCCCCSS
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccH-HHHHHHHHHhhccccccc
Confidence             5577777777777653 235666666666666666 6777777777776643  443332 65555554442       


Q ss_pred             -------CChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcccc
Q 014502          335 -------DRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAY  373 (423)
Q Consensus       335 -------g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~  373 (423)
                             +.++++++.+++...  +.|.+...|......+.+.+..
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCc
Confidence                   456888888888887  5577889998888888776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.81  E-value=0.00033  Score=65.64  Aligned_cols=91  Identities=4%  Similarity=-0.103  Sum_probs=67.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC---CCcc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHHHHH
Q 014502          258 GLCARRKLDRVKSFLKFLLGG---GWKI----NENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLLHFF  324 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~---g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~~~~  324 (423)
                      .+...|++++|..++++.++.   -+.+    ...+++.|...|...|++++|..++++..+     .|. .|+... .+
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-~l  396 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM-AV  396 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH-HH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence            345779999999988887643   1112    245788899999999999999998888654     232 233333 38


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          325 SGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       325 ~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +.|...|...|++++|+.++++..+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999999887664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.79  E-value=0.00024  Score=66.62  Aligned_cols=127  Identities=8%  Similarity=0.022  Sum_probs=95.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-cc-CHHhHH
Q 014502          223 GSLKARDFDSVDRFYEEMMSL---GIIP---S-IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----GW-KI-NENMAQ  288 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~~---~~~p---~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~-~~-~~~~~~  288 (423)
                      .+...|++++|+.++++..+.   -+.|   + ..+++.+...|...|++++|..++++.++.     |- .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            356789999999999887542   2222   2 357889999999999999999999987642     21 12 245788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          289 KLVKCYCELGRVDELEEQLETLTK-----CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       289 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .|...|...|++++|..++++..+     .|..-.....+.+.+-.++...+.+++|+.++.++++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998764     3432222233467788888899999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.78  E-value=0.00037  Score=53.95  Aligned_cols=94  Identities=7%  Similarity=-0.075  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC--------H-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN--------S-----KTYDAFISGFSSLGNVDAMNKWYAANIAA---  208 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  208 (423)
                      .+......+.+.|++++|+..|++..+.   .|+        .     ..|..+..++.+.|++++|+..+++..+.   
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3444455556666666666666666541   222        1     14555555555555555555555555543   


Q ss_pred             --CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          209 --GFSV-NVQTY----ESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       209 --~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                        .+.| +...|    .....++...|++++|+..|++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence              0112 23344    444555555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=0.00012  Score=65.52  Aligned_cols=148  Identities=11%  Similarity=-0.024  Sum_probs=71.7

Q ss_pred             HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          108 LDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      ...+..+...+.+.|++++|...|++....  .|+...       +...|+.+++...+   .        ...|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence            344666777777888888888888876654  233221       11223333332211   1        125666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCH
Q 014502          188 GFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPS-IPILEKVLEG-LCARRKL  265 (423)
Q Consensus       188 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~  265 (423)
                      +|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++..+.  .|+ ...+..+... ....+..
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777776542 25667777777777777888777777776543  233 2333333333 2234556


Q ss_pred             HHHHHHHHHHHhC
Q 014502          266 DRVKSFLKFLLGG  278 (423)
Q Consensus       266 ~~a~~~~~~~~~~  278 (423)
                      +.+...|..+...
T Consensus       316 ~~a~~~~~~~l~~  328 (338)
T 2if4_A          316 QKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCC
Confidence            6677777777653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.74  E-value=0.0001  Score=65.90  Aligned_cols=149  Identities=9%  Similarity=-0.001  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIH  222 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  222 (423)
                      ...+..+...+.+.|++++|...|++....   .|+...       +...++.+++...+.          ...|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            445677777888889999999999887762   344332       223334444332221          237888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH-HHhcCCHH
Q 014502          223 GSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC-YCELGRVD  301 (423)
Q Consensus       223 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~  301 (423)
                      +|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754 3467889999999999999999999999998753 2234455555544 23456677


Q ss_pred             HHHHHHHHHHhC
Q 014502          302 ELEEQLETLTKC  313 (423)
Q Consensus       302 ~a~~~~~~~~~~  313 (423)
                      .+...|..+...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            888899888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.73  E-value=0.00065  Score=52.56  Aligned_cols=63  Identities=8%  Similarity=-0.051  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCchHHHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKC-----NQSPEVLLHFF----SGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .|..+..++.+.|++++|...+++..+.     .+.|+.... |    ...-.++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A-~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL-WISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH-HHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6777777778888888888877777763     115655433 6    7778888888888888888888875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.72  E-value=0.0014  Score=49.93  Aligned_cols=15  Identities=7%  Similarity=0.321  Sum_probs=6.1

Q ss_pred             CCHHHHHHHHHHHHH
Q 014502          193 GNVDAMNKWYAANIA  207 (423)
Q Consensus       193 ~~~~~a~~~~~~m~~  207 (423)
                      +++++|+++|++..+
T Consensus        75 ~d~~~A~~~~~~Aa~   89 (138)
T 1klx_A           75 KDLRKAAQYYSKACG   89 (138)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHc
Confidence            344444444444333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.65  E-value=0.003  Score=47.98  Aligned_cols=112  Identities=13%  Similarity=-0.073  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCH
Q 014502           84 SSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDV  159 (423)
Q Consensus        84 ~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~  159 (423)
                      .++++|.+.    +++..+.+.++..    |...|...+.+++|.+.|++..+.|   +...+..+...|..    .+++
T Consensus         9 ~d~~~A~~~----~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~   77 (138)
T 1klx_A            9 KDLKKAIQY----YVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDL   77 (138)
T ss_dssp             HHHHHHHHH----HHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             cCHHHHHHH----HHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccH
Confidence            356777777    5555566655544    7788888889999999999999875   78888999999988    8999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSS----LGNVDAMNKWYAANIAAGF  210 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~  210 (423)
                      ++|++.|++..+ .   -+...+..|-..|..    .++.++|.++|++..+.|.
T Consensus        78 ~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           78 RKAAQYYSKACG-L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHc-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999999988 3   467778888888888    8899999999999888763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.61  E-value=8.6e-05  Score=53.87  Aligned_cols=61  Identities=7%  Similarity=-0.021  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34444444444444444444444444332 12333444444444444444444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.57  E-value=0.0047  Score=59.23  Aligned_cols=171  Identities=9%  Similarity=-0.043  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014502           85 SPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQN----------VPFAMHVFTSMEAQGIKPDSAVFNSLICACL  154 (423)
Q Consensus        85 ~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  154 (423)
                      ..++|++.    ++++...++.+..+|+.--.++...|+          ++++.+.++.+.+...+ +..+|+.-..++.
T Consensus        44 ~~eeal~~----~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~  118 (567)
T 1dce_A           44 LDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS  118 (567)
T ss_dssp             CSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             CCHHHHHH----HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            34566777    566777777777777776666666665          78888888888876433 6778888888888


Q ss_pred             ccC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 014502          155 CSG--DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKA----  227 (423)
Q Consensus       155 ~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----  227 (423)
                      +.+  +++++++.++++.+..  +-|..+|+.-...+.+.| .++++++.++++.+..+. |..+|+.....+.+.    
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred             HcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence            888  6688888888887732  346667777666677777 788888888888776644 777777766666553    


Q ss_pred             ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014502          228 ----------RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK  264 (423)
Q Consensus       228 ----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  264 (423)
                                +.++++++.+++..... +-|...|.-.-..+.+.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence                      44677777777666543 2344555555555555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.55  E-value=0.0003  Score=51.54  Aligned_cols=74  Identities=15%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             HHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502           97 LDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +++.....+.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus         8 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444445555566667777777777777777777777766653 22455666667777777777777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.47  E-value=0.001  Score=45.90  Aligned_cols=79  Identities=14%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHH
Q 014502          285 NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVI  364 (423)
Q Consensus       285 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~  364 (423)
                      ..+..+...+...|++++|...+++..+..  |+.... +..+...|...|++++|...+++..+.  .|.++..+..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~   84 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEA-WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence            345555556666666666666666665532  322211 555666666666666666666666552  344455555554


Q ss_pred             HHHh
Q 014502          365 CSYF  368 (423)
Q Consensus       365 ~~~~  368 (423)
                      ..+.
T Consensus        85 ~~~~   88 (91)
T 1na3_A           85 NAKQ   88 (91)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00071  Score=48.82  Aligned_cols=63  Identities=10%  Similarity=0.068  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIA  207 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  207 (423)
                      ...|..+...+...|++++|++.|++..+.  .+.+...+..+..++.+.|++++|++.+++..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            344444555555555555555555554431  122334444444555555555555555555444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.40  E-value=0.0023  Score=43.99  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=10.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHH
Q 014502          146 FNSLICACLCSGDVVTALSLFEIMV  170 (423)
Q Consensus       146 ~~~li~~~~~~g~~~~A~~~~~~m~  170 (423)
                      +..+...+...|++++|+..|++..
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~   36 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKAL   36 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3333344444444444444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.39  E-value=0.0017  Score=47.28  Aligned_cols=62  Identities=10%  Similarity=-0.043  Sum_probs=29.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          179 SKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       179 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      ...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444445555555555555555555444321 34444444455555555555555554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.33  E-value=0.0006  Score=48.54  Aligned_cols=64  Identities=11%  Similarity=-0.050  Sum_probs=35.8

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555566666666666666666665554211 344555555666666666666666555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.23  E-value=0.0013  Score=46.74  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          283 NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       283 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +...+..+..+|...|++++|...|++..+.+  |+.... |..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGT-YYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455555666666666666666666665532  332221 55566666666666666666665544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.20  E-value=0.001  Score=51.39  Aligned_cols=14  Identities=14%  Similarity=0.342  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHHh
Q 014502          264 KLDRVKSFLKFLLG  277 (423)
Q Consensus       264 ~~~~a~~~~~~~~~  277 (423)
                      ++++|.+.|++.++
T Consensus       106 ~~~eA~~~~~kAl~  119 (158)
T 1zu2_A          106 NFDLATQFFQQAVD  119 (158)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            45555555555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.18  E-value=0.00078  Score=52.01  Aligned_cols=98  Identities=12%  Similarity=0.030  Sum_probs=63.5

Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014502           82 QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNV----------PFAMHVFTSMEAQGIKPDSAVFNSLIC  151 (423)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~g~~p~~~~~~~li~  151 (423)
                      +.+.+++|.+.    +++..+..+.+...|..+..++.+.+++          ++|+..|++..+.... +..+|..+..
T Consensus        14 r~~~feeA~~~----~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~   88 (158)
T 1zu2_A           14 RILLFEQIRQD----AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHhHHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence            34456777777    4555566667788888777777777664          4777777777765322 4557777777


Q ss_pred             HHHccC-----------CHHHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 014502          152 ACLCSG-----------DVVTALSLFEIMVSSEEYKPNSKTYDAFIS  187 (423)
Q Consensus       152 ~~~~~g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  187 (423)
                      +|...|           ++++|++.|++..+   +.|+...|..-+.
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~  132 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            776653           67777777777765   3566555544443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.10  E-value=0.031  Score=56.04  Aligned_cols=125  Identities=10%  Similarity=0.004  Sum_probs=68.9

Q ss_pred             hcCCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHH
Q 014502          119 GKVQNVPFAMH-VFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDA  197 (423)
Q Consensus       119 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~  197 (423)
                      ...+++++|.+ ++..+      |+......++..+.+.|..++|+++.++-..             -.......|++++
T Consensus       610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~  670 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTL  670 (814)
T ss_dssp             HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHH
Confidence            34566666655 43211      1122336666666677777777655532111             1233455677777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          198 MNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       198 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      |.++.+.+      .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++.+....
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            77765432      2566777777777777777777777776532         22333444445555554444444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.96  E-value=0.05  Score=48.27  Aligned_cols=74  Identities=15%  Similarity=-0.001  Sum_probs=44.7

Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          176 KPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILE  253 (423)
Q Consensus       176 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  253 (423)
                      +.+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++....  .|...||.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            4455566655555555566677766666666654  56555655566666667777766666665553  35555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.96  E-value=0.021  Score=50.70  Aligned_cols=74  Identities=8%  Similarity=-0.125  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHH
Q 014502          211 SVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQ  288 (423)
Q Consensus       211 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  288 (423)
                      ..+..+|..+...+...|++++|...+++....+  |+...|..+-..+...|++++|.+.+++...  +.|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence            4467777777766777788888888888887765  7777777777778888888888888888877  356666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.79  E-value=0.025  Score=56.82  Aligned_cols=154  Identities=6%  Similarity=0.010  Sum_probs=103.5

Q ss_pred             HHHccCCHHHHHH-HHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          152 ACLCSGDVVTALS-LFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDF  230 (423)
Q Consensus       152 ~~~~~g~~~~A~~-~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  230 (423)
                      .....+++++|.+ ++..+       |+......++..+.+.|..++|.++.++-.            .-.......|++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~  668 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL  668 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence            3345788999877 55222       212234778888999999999988763211            113345678999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      +.|.++.+.+      .+...|..+...+.+.|+++.|.+.|.++.+         |..+...|...|+.+...++-+..
T Consensus       669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            9999986443      5678999999999999999999999998754         334555555566666665555555


Q ss_pred             HhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 014502          311 TKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRM  347 (423)
Q Consensus       311 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  347 (423)
                      ...|.        ++.....|.+.|++++|++++.++
T Consensus       734 ~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          734 ETTGK--------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHTTC--------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHcCc--------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            54332        444455566666777666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.67  E-value=0.011  Score=54.42  Aligned_cols=88  Identities=11%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             cCCHHHHHHHHHHHHHHHhhCCC---CC-HhHHHHHHHHHhcCCChhHHHHHHHHHHHC-----CC-CCC-HHHHHHHHH
Q 014502           83 SSSPKKAQLVLEWRLDKMLKGNE---SC-LDEYACLIALSGKVQNVPFAMHVFTSMEAQ-----GI-KPD-SAVFNSLIC  151 (423)
Q Consensus        83 ~~~~~~a~~~~~~~~~~m~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~li~  151 (423)
                      .|++++|..+++..++...+...   |+ ..+++.|..+|...|++++|+.++++..+.     |. .|+ ..+++.+..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45667777776554443322211   22 355677777777777777777777665431     21 122 235666666


Q ss_pred             HHHccCCHHHHHHHHHHHH
Q 014502          152 ACLCSGDVVTALSLFEIMV  170 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~  170 (423)
                      .|...|++++|+.++++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            6666666666666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.66  E-value=0.024  Score=52.16  Aligned_cols=94  Identities=11%  Similarity=-0.008  Sum_probs=69.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC---CccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHH
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGG---WKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLL  321 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~  321 (423)
                      .+..+.+.|++++|..++++.++..   +.|+    ..+++.+...|...|++++|..+++++.+     .|. .|+...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3455667889999999998887541   1222    34788888899999999999998888764     232 343333


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          322 HFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       322 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                       .++.|...|...|++++|+.++++..+
T Consensus       373 -~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 -QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             388889999999999999998887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.63  E-value=0.011  Score=54.41  Aligned_cols=88  Identities=9%  Similarity=-0.017  Sum_probs=64.9

Q ss_pred             hcCCHHHHHHHHHHHHhC---CCccC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCchHHHHHHHH
Q 014502          261 ARRKLDRVKSFLKFLLGG---GWKIN----ENMAQKLVKCYCELGRVDELEEQLETLTK-----CNQ-SPEVLLHFFSGI  327 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~~~~~~~~l  327 (423)
                      ..|++++|..++++.++.   -+.|+    ..+++.|...|...|++++|..++++..+     .|. .|+..+ .++.|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS-MWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH-HHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHH
Confidence            357888898888887642   12222    35788889999999999999999888764     232 344333 38889


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 014502          328 IRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       328 i~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      ...|...|++++|+.++++..+
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHH
Confidence            9999999999999999888764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.13  Score=40.32  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=61.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      ....+.|+++.|.++.+++      -+...|..|.+...+.|+++-|.+.|.....         |..+.-.|...|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            3445667777777766554      2566777777777777777777777765432         333444455566666


Q ss_pred             HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          267 RVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       267 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      ...++-+.....|-      ++.....+...|+++++.++|.+.
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            66655555554441      333444455667777777776443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.45  E-value=0.027  Score=51.84  Aligned_cols=93  Identities=10%  Similarity=0.006  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CccC-HH
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSL---GIIPS----IPILEKVLEGLCARRKLDRVKSFLKFLLGG-----G-WKIN-EN  285 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g-~~~~-~~  285 (423)
                      .+..+.+.|++++|+.++++..+.   -+.|+    ..+++.+...|...|++++|..++++.++.     | ..|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355677889999999999988753   12232    356888999999999999999999987642     2 1222 44


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +++.|...|...|++++|..++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            788899999999999999999988754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.27  Score=38.51  Aligned_cols=100  Identities=11%  Similarity=0.105  Sum_probs=55.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHH
Q 014502          224 SLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDEL  303 (423)
Q Consensus       224 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a  303 (423)
                      ..+.|+++.|.++.+++      -+...|..+.+.....|+++-|.+.|....+         +..+.-.|.-.|+.+..
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34566666666665544      2455666666666666666666666665443         33344445555666555


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 014502          304 EEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGR  346 (423)
Q Consensus       304 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~  346 (423)
                      .++-+.....|-        ++.....+...|+++++.+++.+
T Consensus        80 ~kla~iA~~~g~--------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           80 SKMQNIAQTRED--------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCcc--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            544444443331        44445555556666666666644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.29  E-value=0.015  Score=40.66  Aligned_cols=51  Identities=10%  Similarity=0.098  Sum_probs=19.9

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQ-TYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                      .+.|++++|++.|++..+.... +.. .|..+..+|...|++++|.+.|++..
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444444444333211 223 33334444444444444444444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.18  E-value=0.25  Score=36.51  Aligned_cols=138  Identities=10%  Similarity=-0.009  Sum_probs=74.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDV  340 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a  340 (423)
                      ..|..++..++..+..+..   +..-||-+|.-....-+-+-..++++.+-+.   .|.            ..+|++...
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi------------s~C~NlKrV   80 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL------------DKCQNLKSV   80 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG------------GGCSCTHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc------------HhhhcHHHH
Confidence            4566677777776666532   3344444544444444444445555544331   111            123444444


Q ss_pred             HHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 014502          341 EYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFA  420 (423)
Q Consensus       341 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  420 (423)
                      ...+-.+   +.   +...+...+.....+|..+.++.+..-+....+|++...-.+..+|.+.|+..+|.+++.+.-++
T Consensus        81 i~C~~~~---n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           81 VECGVIN---NT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHT---TC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHh---cc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            4433332   11   14455555666666666665554444433344667777777777777777777777777777777


Q ss_pred             CC
Q 014502          421 EY  422 (423)
Q Consensus       421 g~  422 (423)
                      |+
T Consensus       155 G~  156 (172)
T 1wy6_A          155 GE  156 (172)
T ss_dssp             TC
T ss_pred             hh
Confidence            75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.17  E-value=0.036  Score=38.61  Aligned_cols=55  Identities=9%  Similarity=0.003  Sum_probs=24.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          293 CYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       293 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .+.+.|++++|...+++..+..  |+.....|..+...|...|++++|.+.|++..+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444455555555555544422  322110144444445555555555555555444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.75  Score=42.38  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC--CCccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHH
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGG--GWKIN---ENMAQKLVKCYCELGRVDELEEQLETLTK----CNQSPEVLLHF  323 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~  323 (423)
                      ..+...+...|++.+|.+++..+...  |..+.   ...+...++.|...+++..|..+++++..    ....|+.....
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            34555566666666666666666432  21111   22455556666777777777766666532    22223333333


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      |...+..+...+++.+|...|.+..+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            56666666677777777666666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.92  E-value=0.087  Score=36.52  Aligned_cols=46  Identities=7%  Similarity=0.055  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          196 DAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       196 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      ++|.+++++..+.... +......+...+.+.|++++|+..|+++.+
T Consensus        26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4444444444444322 344444444444444555555555544444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.91  E-value=0.12  Score=39.45  Aligned_cols=80  Identities=13%  Similarity=0.063  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc--CHHhHHHHHHHHHhcCCHHHHHH
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARR---KLDRVKSFLKFLLGGGWKI--NENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      ..+.+-|.+..+.|. ++..+.-.+..++++.+   +.+++..++++..+.. .|  ....+-.+.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            334444444444332 44444444444455544   3345555555555432 12  12222233344455555555555


Q ss_pred             HHHHHHh
Q 014502          306 QLETLTK  312 (423)
Q Consensus       306 ~~~~~~~  312 (423)
                      .++.+.+
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.73  E-value=0.11  Score=36.81  Aligned_cols=26  Identities=8%  Similarity=-0.033  Sum_probs=13.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      +..+..+|.+.|++++|...+++..+
T Consensus        49 ~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           49 LDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44445555555555555555555444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.72  E-value=0.41  Score=35.37  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          250 PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQ  315 (423)
Q Consensus       250 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  315 (423)
                      ..+...++.+...|+.++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-++|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            33444455555555555555555554332 344555555555566666666666666655555554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.71  E-value=0.2  Score=38.20  Aligned_cols=69  Identities=6%  Similarity=-0.022  Sum_probs=33.3

Q ss_pred             hCCCCCHhHHHHHHHHHhcCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          102 KGNESCLDEYACLIALSGKVQ---NVPFAMHVFTSMEAQGIKP--DSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +.+.++..+.-.+.-++++.+   +++++..+|++..+.. .|  +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus        26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            334445555555555555544   4445555555555542 12  123333344444555555555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.61  E-value=0.27  Score=33.95  Aligned_cols=47  Identities=6%  Similarity=0.000  Sum_probs=20.2

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          124 VPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      .++|..+|++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus        25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444444443211 233444444444444444444444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.52  E-value=0.13  Score=36.42  Aligned_cols=70  Identities=10%  Similarity=-0.050  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH
Q 014502          249 IPILEKVLEGLCARRKLDRVKSFLKFLLGGG------WKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVL  320 (423)
Q Consensus       249 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  320 (423)
                      ...+..+...+...|+++.|...++...+.-      -.+...++..+..+|.+.|+++.|...++++.+  ..|+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence            3344455555556666666666666554320      112345666677777777777777777777766  345543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.49  E-value=0.38  Score=41.01  Aligned_cols=110  Identities=7%  Similarity=0.072  Sum_probs=79.5

Q ss_pred             HHHHHHHHHH-HHcc--C------CHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 014502          143 SAVFNSLICA-CLCS--G------DVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSL-----GNVDAMNKWYAAN  205 (423)
Q Consensus       143 ~~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m  205 (423)
                      ...|..++.+ ++..  |      ....|...+++..+   +.|+   ...|..|...|.+.     |+.++|.+.|++.
T Consensus       154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA  230 (301)
T 3u64_A          154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL  230 (301)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence            3466666653 3332  3      24567777777776   3566   55788898889884     9999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 014502          206 IAAGFSVNVQTYESLIHGSLKA-RDFDSVDRFYEEMMSLGII--PSIPILEKV  255 (423)
Q Consensus       206 ~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--p~~~~~~~l  255 (423)
                      .+.+..-+..++......+++. |+.+++.+.+++.......  |+....+.+
T Consensus       231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            9875443577777888888884 9999999999999887665  665444433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.29  E-value=0.87  Score=38.79  Aligned_cols=107  Identities=9%  Similarity=-0.030  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 014502          195 VDAMNKWYAANIAAGFSVN---VQTYESLIHGSLKA-----RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCAR-RKL  265 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~  265 (423)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            35677777777765  455   56788888889884     99999999999998754212366777778888884 999


Q ss_pred             HHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          266 DRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      +++.+.+++.+.....  |+....+.+-        -++|..+++++.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~~  296 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence            9999999999987665  5544444332        355555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.01  E-value=1.6  Score=45.73  Aligned_cols=210  Identities=9%  Similarity=0.035  Sum_probs=126.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 014502          185 FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGI-------------------  245 (423)
Q Consensus       185 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------------------  245 (423)
                      ++..+.+.+..+.+.++....     +.+...--.+..+|...|++++|.+.|++... |+                   
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence            445555566666555443322     22444444566788899999999999966421 11                   


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 014502          246 ----IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINE----NMAQKLVKCYCELGRVDELEEQLETLTKCNQSP  317 (423)
Q Consensus       246 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  317 (423)
                          ..-..-|..++..|-+.+.++.+.++-....+..-+.+.    ..|..+.+.+...|++++|...+-.+......-
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~  971 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK  971 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence                111234677888888899999998888877654322222    257888999999999999999998877644332


Q ss_pred             chHHHHHHHHHHHHHhcCChhHH------------HHHHHHHHhCC-CCCCChHhHHHHHHHHhhcccc-chHHHHHHHH
Q 014502          318 EVLLHFFSGIIRLYALSDRLDDV------------EYSVGRMGKQG-LSFKSAEDVEMVICSYFRCAAY-DRLDLFLDHI  383 (423)
Q Consensus       318 ~~~~~~~~~li~~~~~~g~~~~a------------~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~  383 (423)
                      +  .  ...|+...+..|+.+.-            .+++..-.+.. .....|..|..|=.-+..+|+. .|+.++.+..
T Consensus       972 ~--c--Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B          972 S--C--LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp             H--H--HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             H--H--HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence            2  2  66677777777665543            33332221111 1111255566666666677777 4666666554


Q ss_pred             hC-C------Cc----ccHHHHHHHHHHHHhc
Q 014502          384 KG-S------YK----LRRATYDFLVAGYRRA  404 (423)
Q Consensus       384 ~~-~------~~----p~~~~~~~l~~~~~~~  404 (423)
                      .+ +      ..    .-...|..+|+++.-.
T Consensus      1048 ~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B         1048 SRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence            21 0      01    1134577777777655

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.91  E-value=3.8  Score=37.63  Aligned_cols=192  Identities=13%  Similarity=0.079  Sum_probs=101.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCC--CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH---
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNE--SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQ-GIKPDSAVFNSLICACL---  154 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~---  154 (423)
                      +..+++..|++.+--+-++.+....  ........++..|.+.|+++...+.+..+... |..  ......++..+.   
T Consensus        27 l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l  104 (445)
T 4b4t_P           27 LAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYL  104 (445)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHH
Confidence            4557778888775332222221211  35666788888888888888887777665543 322  222233333222   


Q ss_pred             -ccCCHHH--HHHHHHHHHhcCCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHH
Q 014502          155 -CSGDVVT--ALSLFEIMVSSEEYKPN--------SKTYDAFISGFSSLGNVDAMNKWYAANIAA--GFSVN---VQTYE  218 (423)
Q Consensus       155 -~~g~~~~--A~~~~~~m~~~~~~~p~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~  218 (423)
                       .....+.  -..+.+...   .+...        ......|...+...|++.+|..++.++...  |....   ...|.
T Consensus       105 ~~~~~~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l  181 (445)
T 4b4t_P          105 KSSKSLDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL  181 (445)
T ss_dssp             HHHCTTHHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence             2222221  122222221   11111        112245667777777888877777776542  22211   24555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMS----LGIIPSI--PILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      ..+..|...+++.+|..++++...    ....|+.  ..|...+..+...+++.+|...|.++..
T Consensus       182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            666777777777777777776532    2222222  2345555666667777777776666643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.63  E-value=1.9  Score=45.12  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHH
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVK  292 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~  292 (423)
                      |.-++..+-+.|.++.+.++-+...+..-.-+.    ..|..+.+++...|++++|...+-.+.....+  ......|+.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            445555555566666665555444332111111    13555566666666666666655555443322  233444554


Q ss_pred             HHHhcCC
Q 014502          293 CYCELGR  299 (423)
Q Consensus       293 ~~~~~g~  299 (423)
                      .++..|.
T Consensus       980 ~lce~~~  986 (1139)
T 4fhn_B          980 QLTKQGK  986 (1139)
T ss_dssp             HHHHHCC
T ss_pred             HHHhCCC
Confidence            4444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.35  E-value=1.3  Score=43.48  Aligned_cols=53  Identities=8%  Similarity=-0.073  Sum_probs=39.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETL  310 (423)
Q Consensus       257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  310 (423)
                      +.|...|+++.|+++-++.... .+.+..+|..|..+|...|+++.|.-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3455678888888888887775 2445668888888888888888888888776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.28  E-value=1.4  Score=32.25  Aligned_cols=23  Identities=4%  Similarity=-0.194  Sum_probs=11.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 014502          327 IIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       327 li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      |.-++.+.|++++|.+.++.+.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444455555555555555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.04  E-value=0.00018  Score=65.32  Aligned_cols=265  Identities=8%  Similarity=0.035  Sum_probs=175.7

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      ..+.+|..|..+..+.+.+.+|++.|   .+.   -|+..|..+|.+..+.|.+++-+..+.-.++ ..  .+...=+.|
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~--ke~~IDteL  122 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA--RESYVETEL  122 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TC--CSTTTTHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hh--cccccHHHH
Confidence            45677888888888888888887766   222   2777888888888888998888888776655 32  333444578


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      +-+|++.+++.+.++++       -.||..-...+.+-|...|.++.|.-+|..+..         |..|...+.+.|++
T Consensus       123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~y  186 (624)
T 3lvg_A          123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY  186 (624)
T ss_dssp             HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred             HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence            88888888876544432       246666677788888888888888777755432         33344556667777


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHH
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVG  345 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~  345 (423)
                      ..|.+.-   .+   .-+..||-.+-.+|...+.+.-|.-.--.++-   .|+.    ...++..|-..|.+++.+.+++
T Consensus       187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade----L~elv~~YE~~G~f~ELIsLlE  253 (624)
T 3lvg_A          187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE----LEELINYYQDRGYFEELITMLE  253 (624)
T ss_dssp             GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC----CSGGGSSSSTTCCCTTSTTTHH
T ss_pred             HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH----HHHHHHHHHhCCCHHHHHHHHH
Confidence            7665432   22   23567888888899999998887665544442   3443    2346777899999999999998


Q ss_pred             HHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCc-c-------cHHHHHHHHHHHHhcCChhHHH
Q 014502          346 RMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYK-L-------RRATYDFLVAGYRRAGLSGKLD  411 (423)
Q Consensus       346 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p-------~~~~~~~l~~~~~~~g~~~~a~  411 (423)
                      .-.  |....+...|+-|.-.|++-.--.-.+.+ ++--..+. |       ....|.-++-.|.+-..++.|.
T Consensus       254 agl--glErAHmGmFTELaILYsKY~PeKlmEHl-klf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          254 AAL--GLERAHMGMFTELAILYSKFKPQKMREHL-ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHT--TSTTCCHHHHHHHHHHHHSSCTTHHHHHH-TTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHh--CCCchhHHHHHHHHHHHHhcCHHHHHHHH-HHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            876  45556788889888888876422212221 11111111 1       2344666677777666666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.88  E-value=0.81  Score=33.47  Aligned_cols=90  Identities=17%  Similarity=0.079  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHHHH
Q 014502          228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDR---VKSFLKFLLGGGWK-INENMAQKLVKCYCELGRVDEL  303 (423)
Q Consensus       228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~a  303 (423)
                      .....+.+-|.+....| .|+..+--.+..++.+..+...   ++.+++++.+.+.+ -.....-.|.-++.+.|++++|
T Consensus        15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            33445555555554444 3666665566667777766555   77777777776421 1222333455677888888888


Q ss_pred             HHHHHHHHhCCCCCchH
Q 014502          304 EEQLETLTKCNQSPEVL  320 (423)
Q Consensus       304 ~~~~~~~~~~~~~p~~~  320 (423)
                      .+.++.+.+  +.|+..
T Consensus        94 ~~~~~~lL~--~eP~n~  108 (126)
T 1nzn_A           94 LKYVRGLLQ--TEPQNN  108 (126)
T ss_dssp             HHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHH--hCCCCH
Confidence            888888887  446543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.83  E-value=2  Score=38.78  Aligned_cols=58  Identities=9%  Similarity=0.044  Sum_probs=31.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          147 NSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANI  206 (423)
Q Consensus       147 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  206 (423)
                      ..++..+...|++++|+..+..+...  -+-+...|..+|.++.+.|+..+|++.|++..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445555556666665555555442  13345555556666666666666665555543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.79  E-value=1  Score=34.04  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=60.3

Q ss_pred             CCHhHHHHHHHHHhcCCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHHH------HccCCHHHHHHHHHHHHhc
Q 014502          106 SCLDEYACLIALSGKVQNV------PFAMHVFTSMEAQGIKPDSA-VFNSLICAC------LCSGDVVTALSLFEIMVSS  172 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~~------~~~g~~~~A~~~~~~m~~~  172 (423)
                      .|..+|-..+...-+.|++      ++..++|++.... ++|+.. .|...|...      ...+++++|.++|+.+...
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3566666666666666776      6666777766653 444421 111111111      1236777777777777652


Q ss_pred             CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014502          173 EEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSV  212 (423)
Q Consensus       173 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  212 (423)
                       .-.- ...|-..-..-.+.|+++.|.+++......+..|
T Consensus        90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence             1122 5555555566667777777777777777766553

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.13  E-value=0.85  Score=31.60  Aligned_cols=47  Identities=9%  Similarity=0.174  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-+..
T Consensus        27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.91  E-value=2.1  Score=32.29  Aligned_cols=52  Identities=8%  Similarity=0.013  Sum_probs=25.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          228 RDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW  280 (423)
Q Consensus       228 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~  280 (423)
                      +++++|.++|+.+.+..-.- ...|......=.+.|+...|.+++......+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            45555555555554421111 33344444444455666666666665555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.90  E-value=12  Score=37.83  Aligned_cols=259  Identities=10%  Similarity=0.039  Sum_probs=128.1

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPNS--KTYDAFISGFSSLGNVDAMNKWYAANIAAGF-------SVNVQTYESLIH  222 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~li~  222 (423)
                      +....|+.++++.++..... .+-..+.  ..-..+.-+....|..+++..++.......-       .+....-.++--
T Consensus       383 GlIh~g~~~~gl~~L~~yL~-~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLP-GSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTST-TSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            34456777777666665542 1101122  2223333445566666667777766554321       011222223333


Q ss_pred             HHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHH--Hhc
Q 014502          223 GSLKARD-FDSVDRFYEEMMSLGIIPSIPILEK--VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCY--CEL  297 (423)
Q Consensus       223 ~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~  297 (423)
                      +++-.|. -+++.+.+..+....- +.......  +...+.-.|+.+....++..+.+..   +..+...+..++  ...
T Consensus       462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence            3333332 2455565555554321 11111222  2223445677777777777776532   333333343343  367


Q ss_pred             CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHH
Q 014502          298 GRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLD  377 (423)
Q Consensus       298 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  377 (423)
                      |+.+.+..+++.+... ..|......-.++.-+|+..|+.....+++..+.+...  ++......+.-++...|+.+...
T Consensus       538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~--d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN--DDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc--HHHHHHHHHHHHhhccCCHHHHH
Confidence            8888888888777652 22332211112344567777887777778888776421  11222233344444456655443


Q ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 014502          378 LFLDHIKGSYKLRRATYDFLVAGYRRAGLS-GKLDSVINEMK  418 (423)
Q Consensus       378 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~  418 (423)
                      .+.+.+.....|...--..+.-+....|+. .++..++..+.
T Consensus       615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            333433333345544444555555555554 46777777664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.84  E-value=0.92  Score=40.93  Aligned_cols=67  Identities=16%  Similarity=0.076  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 014502          183 DAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS-----LGIIPSIP  250 (423)
Q Consensus       183 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~  250 (423)
                      ..++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+..     .|+.|...
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            344555556666666666666555543 22555666666666666666666666655432     35555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.31  E-value=2.6  Score=29.22  Aligned_cols=69  Identities=9%  Similarity=0.057  Sum_probs=52.7

Q ss_pred             HHHhcC-CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502          258 GLCARR-KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR  329 (423)
Q Consensus       258 ~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~  329 (423)
                      .|.+.. +.-++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+.-.. ..+  |..+++
T Consensus        18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~i--Y~~~lq   87 (109)
T 1v54_E           18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEI--YPYVIQ   87 (109)
T ss_dssp             HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTH--HHHHHH
T ss_pred             HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhh--HHHHHH
Confidence            333444 556778888888888899999999999999999999999999999988654322 333  666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.81  E-value=1.5  Score=43.14  Aligned_cols=128  Identities=8%  Similarity=0.128  Sum_probs=80.8

Q ss_pred             HHHHHHHHhcCCC-hhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccC-CHHHHHHHHHHHHhc-----CCCCCCH-H
Q 014502          111 YACLIALSGKVQN-VPFAMHVFTSMEAQGIKPDSAV--FNSLICACLCSG-DVVTALSLFEIMVSS-----EEYKPNS-K  180 (423)
Q Consensus       111 ~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~-----~~~~p~~-~  180 (423)
                      ...++..+...++ ++.|..+|+++.+.  .|...+  ...+|..+...+ +--+|.+++.+..+.     ...++.. .
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            4556666666666 58899999999886  343332  223333333332 233455555554320     0112211 1


Q ss_pred             ----------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          181 ----------TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       181 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                                ..+.=...|...|+++.|+++-++....-+ -+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                      111113456678999999999999887632 257899999999999999999999988773

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.38  E-value=1.3e-05  Score=72.55  Aligned_cols=223  Identities=13%  Similarity=0.155  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          142 DSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI  221 (423)
Q Consensus       142 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  221 (423)
                      .+..|..+..+....+++.+|++-|-  +.     -|...|..+|....+.|.+++-++++...++..-  +...=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSC--CC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHH--hC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence            34566666666666666666655442  11     2444566666666666666666666655544422  233334666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHH
Q 014502          222 HGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVD  301 (423)
Q Consensus       222 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  301 (423)
                      -+|++.++..+..+++.       .|+..-...+.+-|...|.++.|.-+|..+..         |..|..++.+.|++.
T Consensus       124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq  187 (624)
T 3lvg_A          124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ  187 (624)
T ss_dssp             HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred             HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence            66666666554433321       35555555566666666666665555443322         233444455666666


Q ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccch-HHHHH
Q 014502          302 ELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDR-LDLFL  380 (423)
Q Consensus       302 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~  380 (423)
                      .|.+.-++.      .+..+  |..+..+|...+.+.-|.-.--.+.-      .++....++..|...|.++. +.++.
T Consensus       188 ~AVdaArKA------ns~kt--WKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlE  253 (624)
T 3lvg_A          188 AAVDGARKA------NSTRT--WKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLE  253 (624)
T ss_dssp             SSTTTTTTC------CSSCS--HHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHH
T ss_pred             HHHHHHHhc------CChhH--HHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            655433222      22223  77777788888877766555444432      14444567777788887754 44444


Q ss_pred             HHHhCCCcccHHHHHHHHHHHHhc
Q 014502          381 DHIKGSYKLRRATYDFLVAGYRRA  404 (423)
Q Consensus       381 ~~~~~~~~p~~~~~~~l~~~~~~~  404 (423)
                      .-+. .-....-.|+-|...|++-
T Consensus       254 aglg-lErAHmGmFTELaILYsKY  276 (624)
T 3lvg_A          254 AALG-LERAHMGMFTELAILYSKF  276 (624)
T ss_dssp             HHTT-STTCCHHHHHHHHHHHHSS
T ss_pred             HHhC-CCchhHHHHHHHHHHHHhc
Confidence            3331 1234566777777777764

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=89.22  E-value=1.9  Score=31.68  Aligned_cols=60  Identities=7%  Similarity=0.124  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHH
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLV  291 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li  291 (423)
                      .+..+-++.+...++.|++......+.+|-+.+|+..|.++++-+..+ +.+...+|..++
T Consensus        70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l  129 (152)
T 2y69_E           70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence            344455555555566666666666666666666666666666655543 223333454443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.54  E-value=3.4  Score=37.79  Aligned_cols=99  Identities=8%  Similarity=-0.113  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCchHHHHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGGGWK--INENMAQKLVKCYCELGRVDELEEQLETLTK---CNQSPEVLLHFFS  325 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~~  325 (423)
                      +...+...|.+.|+++.|.+.+.++......  .-...+-.++..+...+++..+...++++..   .+..|+.......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5566777778888888888888887764222  2244666677777778888888877777654   3333333332212


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh
Q 014502          326 GIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       326 ~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .-...+...+++.+|...|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            222233456677777777766554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.39  E-value=23  Score=35.77  Aligned_cols=252  Identities=9%  Similarity=0.032  Sum_probs=127.7

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhC---CCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKG---NESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGI-------KPDSAVFNSLI  150 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li  150 (423)
                      ...++.++++..    ++.....   +.+....-..+.-+....|..+++..++.......-       .+....-.++.
T Consensus       385 Ih~g~~~~gl~~----L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG  460 (963)
T 4ady_A          385 IHKGNLLEGKKV----MAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG  460 (963)
T ss_dssp             HTSSCTTTHHHH----HTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHH----HHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence            466777777777    3333321   112223333444444555555567776665544210       01111222333


Q ss_pred             HHHHccCC-HHHHHHHHHHHHhcCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHH
Q 014502          151 CACLCSGD-VVTALSLFEIMVSSEEYKPNSKTYD--AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLI--HGSL  225 (423)
Q Consensus       151 ~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li--~~~~  225 (423)
                      -+++-.|. -+++.+.+..+.....  +......  +|...+...|+-+....++..+.+..   +......+.  -++.
T Consensus       461 LGla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll  535 (963)
T 4ady_A          461 IGLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI  535 (963)
T ss_dssp             HHHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence            33333343 2355566665554111  1111122  22333456677777777777666542   222233333  3444


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH--HHhcCCH
Q 014502          226 KARDFDSVDRFYEEMMSLGIIPSIPILE---KVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC--YCELGRV  300 (423)
Q Consensus       226 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~  300 (423)
                      -.|+.+.+..+.+.+.... .|.. -|.   ++.-+|+..|+.....+++..+....   +..+-...+.+  +...|+.
T Consensus       536 ~~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          536 NYGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             TTTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSC
T ss_pred             hCCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCH
Confidence            6788888888888877632 2222 233   23345667788877777888887642   22233333333  3346776


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL-DDVEYSVGRMGK  349 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~  349 (423)
                      +.+.++++.+.+.+ .|....  -..+.-+....|.. .++.+++..+..
T Consensus       611 e~v~rlv~~L~~~~-d~~VR~--gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          611 TTVPRIVQLLSKSH-NAHVRC--GTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             SSHHHHTTTGGGCS-CHHHHH--HHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcC-CHHHHH--HHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            77777776665533 344433  23344444445554 567778888764

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.30  E-value=6.1  Score=29.07  Aligned_cols=63  Identities=10%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 014502          264 KLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIR  329 (423)
Q Consensus       264 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~  329 (423)
                      |.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-++.+.-.. ..+  |..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~i--Y~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEI--YPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTH--HHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhh--HHHHHH
Confidence            455677777888888899999999999999999999999999999988754322 333  666654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=87.32  E-value=2  Score=36.21  Aligned_cols=22  Identities=27%  Similarity=0.181  Sum_probs=10.9

Q ss_pred             HhcCChhHHHHHHHHHHhCCCC
Q 014502          332 ALSDRLDDVEYSVGRMGKQGLS  353 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~~~~~  353 (423)
                      +..|+.....++.+.+.+.|..
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~  211 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGAD  211 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCC
T ss_pred             HHccccchHHHHHHHHHHcCCC
Confidence            3344444445555555555544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=85.06  E-value=28  Score=33.43  Aligned_cols=77  Identities=8%  Similarity=0.002  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHh
Q 014502          112 ACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSS  191 (423)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  191 (423)
                      +.-+..+.+.+++.....++..     .+.+...-.....+....|+..+|......+-....  .....++.++..+.+
T Consensus        76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~~~~  148 (618)
T 1qsa_A           76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK--SQPNACDKLFSVWRA  148 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS--CCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHH
Confidence            3445555566666655554432     133555555566666666776666666666654222  223356666666666


Q ss_pred             cCCH
Q 014502          192 LGNV  195 (423)
Q Consensus       192 ~~~~  195 (423)
                      .|.+
T Consensus       149 ~g~l  152 (618)
T 1qsa_A          149 SGKQ  152 (618)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            5554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.17  E-value=7.4  Score=26.89  Aligned_cols=18  Identities=17%  Similarity=0.095  Sum_probs=7.6

Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 014502          191 SLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~  208 (423)
                      +.|..+++...+.++...
T Consensus        81 rlGl~s~le~rL~~la~s   98 (116)
T 2p58_C           81 RLGLGSALESRLNRLARS   98 (116)
T ss_dssp             HHTCHHHHHHHHHHHTTC
T ss_pred             hcccHHHHHHHHHHHHhC
Confidence            334444444444444333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=83.04  E-value=5.3  Score=30.68  Aligned_cols=69  Identities=6%  Similarity=-0.041  Sum_probs=37.4

Q ss_pred             ccCCcChhhHHHH--HHH-HhcCCHHHHHHHHHHHHHHHhhCCCCC-------HhHHHHHHHHHhcCCChhHHHHHHHHH
Q 014502           65 FAFNSSQFSWDAL--ITS-LQSSSPKKAQLVLEWRLDKMLKGNESC-------LDEYACLIALSGKVQNVPFAMHVFTSM  134 (423)
Q Consensus        65 ~g~~p~~~~~~~l--i~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m  134 (423)
                      .|..|....|+.+  +.. +..+.++.|.-+...+. .+.+. .||       ..++..+.+++...|++.+|...|++.
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLl-Sl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLL-TLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4555655544433  223 57777887777754322 22211 222       235677788888999999999999886


Q ss_pred             H
Q 014502          135 E  135 (423)
Q Consensus       135 ~  135 (423)
                      .
T Consensus        90 L   90 (167)
T 3ffl_A           90 L   90 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=82.84  E-value=3.9  Score=34.37  Aligned_cols=48  Identities=17%  Similarity=0.147  Sum_probs=22.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCHHHHHHHHH
Q 014502          261 ARRKLDRVKSFLKFLLGGGWKINENM--AQKLVKCYCELGRVDELEEQLE  308 (423)
Q Consensus       261 ~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~  308 (423)
                      ..+......++.+.+.+.|..++...  -.+.+...++.|+.+-+..+++
T Consensus       191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            34444444555555666655443221  1122334445566654444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.20  E-value=7  Score=26.96  Aligned_cols=50  Identities=18%  Similarity=0.048  Sum_probs=23.1

Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014502          153 CLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAG  209 (423)
Q Consensus       153 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  209 (423)
                      +...|++++|..+.+.+.     .||...|-+|-  -.+.|..+++...+.++...|
T Consensus        49 LmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg   98 (115)
T 2uwj_G           49 LANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS   98 (115)
T ss_dssp             HHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred             HHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence            344555555555444332     35555443332  234455555555554554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.59  E-value=29  Score=31.08  Aligned_cols=168  Identities=7%  Similarity=-0.055  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC---HHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHH-
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN---SKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTY-  217 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~-  217 (423)
                      ......+...|.+.|+.++..+++...+.-.+..|-   ......++..+.... ..+.-.++..+..+..-. +-.+| 
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl   97 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            456677888899999999999998887653222232   234567777777643 344444444444332101 11233 


Q ss_pred             -----HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHH
Q 014502          218 -----ESLIHGSLKARDFDSVDRFYEEMMSL--GIIPS---IPILEKVLEGLCARRKLDRVKSFLKFLLGG--GWKINEN  285 (423)
Q Consensus       218 -----~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~  285 (423)
                           ..++..|...|++.+|.+++.++.+.  .....   ...|..-+..|...+++.++...+......  .+.+++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence                 25778888889999988888887652  21111   234556667778888888888888777543  2324443


Q ss_pred             hHHHH----HHHHH-hcCCHHHHHHHHHHHH
Q 014502          286 MAQKL----VKCYC-ELGRVDELEEQLETLT  311 (423)
Q Consensus       286 ~~~~l----i~~~~-~~g~~~~a~~~~~~~~  311 (423)
                      +...+    ...+. ..+++..|...|-+..
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            33221    22334 6788888877776654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.33  E-value=14  Score=33.75  Aligned_cols=119  Identities=11%  Similarity=-0.030  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502          195 VDAMNKWYAANIAAG-FSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSL--GIIPSIPILEKVLEGLCARRKLDRVKS  270 (423)
Q Consensus       195 ~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~  270 (423)
                      +++-.+......+.. ... -..+...+...|.+.|++++|.+.|.++...  +..--...+-.++..+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            344444444444432 222 2236778999999999999999999999864  333345678888999999999999999


Q ss_pred             HHHHHHh---CCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 014502          271 FLKFLLG---GGWKINENM--AQKLVKCYCELGRVDELEEQLETLTKC  313 (423)
Q Consensus       271 ~~~~~~~---~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~  313 (423)
                      .+.++..   .+-.|+...  ...-...+...+++..|...|-+....
T Consensus       190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            9998754   232333221  111122234578899998888776654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.08  E-value=11  Score=26.00  Aligned_cols=78  Identities=12%  Similarity=-0.044  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK  273 (423)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  273 (423)
                      ..++|..+-+.+...+.  ...+--+-+..+...|+|++|..+.+.+.    .||...|..+..  .+.|..+++...+.
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   93 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN   93 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            34555555555554432  11111112234555566666665544332    455555544432  24555555555555


Q ss_pred             HHHhCC
Q 014502          274 FLLGGG  279 (423)
Q Consensus       274 ~~~~~g  279 (423)
                      ++..+|
T Consensus        94 ~la~sg   99 (116)
T 2p58_C           94 RLARSQ   99 (116)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            555544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=80.51  E-value=11  Score=26.08  Aligned_cols=78  Identities=10%  Similarity=-0.115  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014502          194 NVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLK  273 (423)
Q Consensus       194 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  273 (423)
                      ..++|..+-+.+...+.  ...+--+-+..+...|+|++|..+.+.+.    .||...|..+..  .+.|..+++...+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            34555555555554432  11111122234555666666665543332    455555554432  35555555555555


Q ss_pred             HHHhCC
Q 014502          274 FLLGGG  279 (423)
Q Consensus       274 ~~~~~g  279 (423)
                      ++..+|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.1
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.93
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.57
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.32
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.19
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.15
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.13
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.12
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.01
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.96
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.85
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.81
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.8
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.66
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.45
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.27
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.23
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.97
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.68
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.53
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.53
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.51
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.71
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.32
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.51
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	83.7

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-19  Score=160.96  Aligned_cols=216  Identities=11%  Similarity=0.041  Sum_probs=112.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          180 KTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGL  259 (423)
Q Consensus       180 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  259 (423)
                      ..+..+...+...|++++|...+++..+.... +...|..+...+...|++++|...+++....+ ..+...+..+...+
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  247 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY  247 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence            34444445555555555565555555544322 34455555555555566666665555554433 23344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502          260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       260 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      .+.|++++|...+++..+.. +.+..++..+...+...|++++|.+.++......  |+.... +..+...+...|++++
T Consensus       248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADS-LNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHTTTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--Cccchh-hhHHHHHHHHCCCHHH
Confidence            55566666666665555532 2234455555555555666666665555554422  222211 4555555555566666


Q ss_pred             HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCcc-cHHHHHHHHHHHHhcC
Q 014502          340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKL-RRATYDFLVAGYRRAG  405 (423)
Q Consensus       340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  405 (423)
                      |++.|++..+  +.|+++.++..+...|.+.|+.+ +...+.+.++.  .| +...|..+..+|.+.|
T Consensus       324 A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         324 AVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            6666655554  33445555555555555555553 34444444432  23 2445555555555544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-17  Score=148.56  Aligned_cols=310  Identities=11%  Similarity=0.020  Sum_probs=249.7

Q ss_pred             hcCC-chhHHHHHHHhhhccCCcChhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChh
Q 014502           48 LQVP-VSQIKTTLDSVDIFAFNSSQFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVP  125 (423)
Q Consensus        48 ~~~~-~~~~~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~  125 (423)
                      -+.| ...+.+.++++.+..+ -+...+..+... ...|++++|...    +++..+..+.+..+|..+..+|.+.|+++
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~----~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHF----STLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            3444 3455777777755432 235556555555 688999999999    45566666667889999999999999999


Q ss_pred             HHHHHHHHHHHCCCC-----------------------------------------------------------------
Q 014502          126 FAMHVFTSMEAQGIK-----------------------------------------------------------------  140 (423)
Q Consensus       126 ~a~~~~~~m~~~g~~-----------------------------------------------------------------  140 (423)
                      +|...+....+....                                                                 
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            999988877653211                                                                 


Q ss_pred             --CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014502          141 --PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYE  218 (423)
Q Consensus       141 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  218 (423)
                        -+...+..+...+...|++++|...+++..+..  +-+...|..+...+...|++++|...+++....+. .+...+.
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~  241 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHG  241 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHH
Confidence              123456666777888999999999999987622  33566888899999999999999999999988764 3677888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 014502          219 SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELG  298 (423)
Q Consensus       219 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  298 (423)
                      .+...+.+.|++++|++.|++..+.. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCC
Confidence            89999999999999999999998764 345678999999999999999999999998876 3567788899999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccc
Q 014502          299 RVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAA  372 (423)
Q Consensus       299 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~  372 (423)
                      ++++|...+++..+  ..|+.... |..+...|...|++++|.+.|++..+  +.|+++..|..+...|.+.||
T Consensus       320 ~~~~A~~~~~~al~--~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALE--VFPEFAAA-HSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTT--SCTTCHHH-HHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHH--hCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999987  44665433 88899999999999999999999987  668889999999999988775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-12  Score=115.52  Aligned_cols=230  Identities=9%  Similarity=-0.050  Sum_probs=150.7

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhc
Q 014502          113 CLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSL  192 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  192 (423)
                      .....+.+.|++++|...|++..+... -+..+|..+..++...|++++|...|++..+..  +-+...+..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccc
Confidence            456677889999999999999988642 257788999999999999999999999887621  33566788888889999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 014502          193 GNVDAMNKWYAANIAAGFSVN--------------VQTYESLIHGSLKARDFDSVDRFYEEMMSLG-IIPSIPILEKVLE  257 (423)
Q Consensus       193 ~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~  257 (423)
                      |++++|.+.+++.........              .......+..+...+.+++|.+.|++..+.. -.++...+..+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            999999999998887532110              0001111223334455666666666554422 1234555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCCh
Q 014502          258 GLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRL  337 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~  337 (423)
                      .+...|++++|...+++..... +-+..+|..+..+|.+.|++++|.+.+++..+.  .|+.... |..+...|.+.|++
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a-~~~lg~~~~~~g~~  256 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRS-RYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHH-HHHHHHHHHHCCCH
Confidence            6666677777777776666542 224556666666666777777777777666653  3443322 55666666677777


Q ss_pred             hHHHHHHHHHHh
Q 014502          338 DDVEYSVGRMGK  349 (423)
Q Consensus       338 ~~a~~~~~~m~~  349 (423)
                      ++|++.|++..+
T Consensus       257 ~~A~~~~~~al~  268 (323)
T d1fcha_         257 REAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777776666654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-12  Score=114.55  Aligned_cols=229  Identities=10%  Similarity=0.047  Sum_probs=184.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502           74 WDALITSLQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICAC  153 (423)
Q Consensus        74 ~~~li~~~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  153 (423)
                      |+.-+..++.|++++|...    |++..+..+.+..+|..+..++...|++++|...|++..+... -+...|..+..+|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~----~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~   97 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLL----FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSF   97 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHH----HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccc
Confidence            4443444799999999999    6777777877899999999999999999999999999987642 2677899999999


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCCCHHh----------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHH
Q 014502          154 LCSGDVVTALSLFEIMVSSEEYKPNSKT----------------YDAFISGFSSLGNVDAMNKWYAANIAAGF-SVNVQT  216 (423)
Q Consensus       154 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~----------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~  216 (423)
                      ...|++++|.+.+++....   .|+...                ....+..+...+.+++|.+.+.+..+... .++...
T Consensus        98 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~  174 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  174 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHT---STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             cccccccccccchhhHHHh---ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence            9999999999999998762   232111                11122334455667888889888776532 345678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE  296 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  296 (423)
                      +..+...+...|++++|+..|++..... +-+...|..+...+...|++++|.+.+++..+.. +-+..++..+..+|.+
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence            8888999999999999999999987754 3357788899999999999999999999998853 3357788899999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q 014502          297 LGRVDELEEQLETLTK  312 (423)
Q Consensus       297 ~g~~~~a~~~~~~~~~  312 (423)
                      .|++++|.+.|++..+
T Consensus       253 ~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         253 LGAHREAVEHFLEALN  268 (323)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999876

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.4e-10  Score=96.70  Aligned_cols=189  Identities=11%  Similarity=0.017  Sum_probs=146.5

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014502          158 DVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFY  237 (423)
Q Consensus       158 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  237 (423)
                      ..++|..+|++..+ ...+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus        79 ~~~~a~~i~~ral~-~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          79 FSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45788889988876 33444566777888888899999999999999887654434567888999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 014502          238 EEMMSLGIIPSIPILEKVLEG-LCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN-Q  315 (423)
Q Consensus       238 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~  315 (423)
                      ++..+.+. .+...|...... +...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++..+.. .
T Consensus       158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99887653 233344333332 34568899999999999886 45567889999999999999999999999987754 3


Q ss_pred             CCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          316 SPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       316 ~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  349 (423)
                      .|.....+|...+..-...|+.+.+.++++++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4544444488888888899999999999998876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2e-09  Score=93.61  Aligned_cols=217  Identities=11%  Similarity=0.006  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          143 SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLG-NVDAMNKWYAANIAAGFSVNVQTYESL  220 (423)
Q Consensus       143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l  220 (423)
                      ...|+.+...+.+.+.+++|+++++++.+.   .| +...|+....++...| ++++|++.++...+.... +..+|+.+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~  118 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHH
Confidence            446777777778888888888888888872   34 4456777777777765 478888888888777544 77888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC-
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR-  299 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-  299 (423)
                      ...+.+.|++++|++.++++.+.. +-+...|..+...+...|++++|.+.++++++.. +-+...|+.+...+.+.+. 
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence            888888888888888888887754 3457778888888888888888888888888753 2356677766666666555 


Q ss_pred             -----HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh
Q 014502          300 -----VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR  369 (423)
Q Consensus       300 -----~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~  369 (423)
                           +++|...+.+..+.  .|+.... |+.+...+.. ...+++.+.++...+....+.++..+..++..|..
T Consensus       197 ~~~~~~~~ai~~~~~al~~--~P~~~~~-~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKL--VPHNESA-WNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHH--STTCHHH-HHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHh--CCCchHH-HHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence                 46777777777773  3544332 5555544443 44567777777776544333445555556655544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.9e-09  Score=92.60  Aligned_cols=195  Identities=9%  Similarity=0.045  Sum_probs=91.9

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSG-DVVTALSLFEIMVSSEEYKPNSKTYDAFISGF  189 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  189 (423)
                      |+.+...+.+.+.+++|+++++++.+.... +...|+....++...| ++++|+..++...+.  -+-+..+|..+...+
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence            344444444455555555555555543211 3334444444444443 245555555554431  122344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 014502          190 SSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK-----  264 (423)
Q Consensus       190 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----  264 (423)
                      .+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.++++.+.+ +-+...|+.....+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence            5555555555555555544322 45555555555555555555555555554432 2233344443333333332     


Q ss_pred             -HHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          265 -LDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       265 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                       +++|.+.+....+.. +.+...|..+...+.. ...+++...++...+
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence             445566666555542 2244555544443332 334555566655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.8e-08  Score=87.30  Aligned_cols=263  Identities=11%  Similarity=0.012  Sum_probs=130.8

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCC-----HhHHHHHHHHHhcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESC-----LDEYACLIALSGKVQNVPFAMHVFTSMEAQGI-KPD----SAVFNSLI  150 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li  150 (423)
                      +..|++++|.+.++..    ....+.+     ..++..+...+...|++++|...|++..+... .++    ...+..+.
T Consensus        23 ~~~g~~~~A~~~~~~a----L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          23 INDGNPDEAERLAKLA----LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHTTCHHHHHHHHHHH----HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH----HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            4666777777774332    2222211     23455566666666777777776666544210 011    22344455


Q ss_pred             HHHHccCCHHHHHHHHHHHHhc---CCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 014502          151 CACLCSGDVVTALSLFEIMVSS---EEYKPN---SKTYDAFISGFSSLGNVDAMNKWYAANIAAG----FSVNVQTYESL  220 (423)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~m~~~---~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~l  220 (423)
                      ..+...|++..+...+.+....   .+....   ...+..+...+...|+++.+...+.......    ......++...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5666666666666666654321   111111   1233444555666666666666666555431    11123344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc---CHHhHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSL--GIIPSI----PILEKVLEGLCARRKLDRVKSFLKFLLGGGWKI---NENMAQKLV  291 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li  291 (423)
                      ...+...+++..+...+.+....  ......    ..+......+...|+++.|...++.........   ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45555666666666665554321  111111    123344444555666666666666554432111   122344455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 014502          292 KCYCELGRVDELEEQLETLTK----CNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMG  348 (423)
Q Consensus       292 ~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  348 (423)
                      ..+...|++++|...++....    .+..|+.. .++..+...|...|++++|.+.+++..
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLN-RNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566666666666666665542    22223222 125555566666666666666665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=6.2e-09  Score=90.26  Aligned_cols=213  Identities=7%  Similarity=-0.015  Sum_probs=161.6

Q ss_pred             HHHHhhCCCCCHhHHHHHHHHHhc--------------CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 014502           97 LDKMLKGNESCLDEYACLIALSGK--------------VQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTA  162 (423)
Q Consensus        97 ~~~m~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  162 (423)
                      |++.....+.++..|..-+..+-+              .+..++|..+|++..+...+.+...|...+......|+++.|
T Consensus        39 yerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a  118 (308)
T d2onda1          39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV  118 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHH
Confidence            444444444566666555544322              234578899999988765555777899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 014502          163 LSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHG-SLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       163 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~  241 (423)
                      ..+|+++.+ ........+|...+..+.+.|+++.|.++|+...+.+.. +...|...... +...|+.+.|..+|+.+.
T Consensus       119 ~~i~~~~l~-~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l  196 (308)
T d2onda1         119 HSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGL  196 (308)
T ss_dssp             HHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            999999986 222222457889999999999999999999999887543 44444444333 345689999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          242 SLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGG-WKIN--ENMAQKLVKCYCELGRVDELEEQLETLTK  312 (423)
Q Consensus       242 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~  312 (423)
                      +.. +.+...|...++.+...|+++.|..+|++..... ..|+  ...|...+..-...|+.+.+..+++.+.+
T Consensus       197 ~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         197 KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             Hhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            753 4557889999999999999999999999988763 3333  45788888888889999999999998766

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=4e-08  Score=86.26  Aligned_cols=275  Identities=12%  Similarity=0.007  Sum_probs=170.2

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC----HHh
Q 014502          110 EYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD----SAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN----SKT  181 (423)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~  181 (423)
                      ........+...|++++|.+++++..+.....+    ...++.+..+|...|++++|+..|++..+...-.++    ...
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344445666788888888888888877532211    235666777888888888888888877542111122    234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH
Q 014502          182 YDAFISGFSSLGNVDAMNKWYAANIAA----GFSVN---VQTYESLIHGSLKARDFDSVDRFYEEMMSL----GIIPSIP  250 (423)
Q Consensus       182 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~  250 (423)
                      +..+...+...|++..+...+.+....    +....   ...+..+...+...|+++.+...++.....    +......
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            555667777888888888888765532    11111   234555667777888888888888777542    2222344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHH
Q 014502          251 ILEKVLEGLCARRKLDRVKSFLKFLLGG----GWKI--NENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE-VLLHF  323 (423)
Q Consensus       251 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~  323 (423)
                      .+......+...++...+...+.+....    +..+  ....+..+...+...|+.++|...++...+.....+ .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5556666677778888887777765432    1111  122445566677778888888888877665432222 22222


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHh
Q 014502          324 FSGIIRLYALSDRLDDVEYSVGRMGK----QGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIK  384 (423)
Q Consensus       324 ~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~  384 (423)
                      +..+...+...|++++|...+++...    .+..|.....+..+...|...|+.+ +.+.+.+.+.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55677778888888888888877653    2333333455566667777777774 4555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=6.2e-10  Score=97.99  Aligned_cols=276  Identities=10%  Similarity=-0.018  Sum_probs=184.3

Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHH---hc-------CCChhHHHHHHHHHHHCCCCCCH
Q 014502           75 DALITSLQSSS-PKKAQLVLEWRLDKMLKGNESCLDEYACLIALS---GK-------VQNVPFAMHVFTSMEAQGIKPDS  143 (423)
Q Consensus        75 ~~li~~~~~~~-~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~---~~-------~~~~~~a~~~~~~m~~~g~~p~~  143 (423)
                      ..++.....+. .++|+++    +++....++.+...|+..-..+   ..       .|++++|+.+++...+.. +-+.
T Consensus        33 ~~~~~~~~~~~~~~~al~~----~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~  107 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLEL----TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSY  107 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHhcccccHHHHHH----HHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcH
Confidence            33443334443 4788888    4556566655666665433332   22       344778888888887764 2367


Q ss_pred             HHHHHHHHHHHccC--CHHHHHHHHHHHHhcCCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          144 AVFNSLICACLCSG--DVVTALSLFEIMVSSEEYKPNSKTYDA-FISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL  220 (423)
Q Consensus       144 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  220 (423)
                      ..|..+..++...+  +.++|...+++..+.  -+++...+.. ....+...+..++|+..++...+..+. +...|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l  184 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR  184 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence            77887777777665  478899999888762  1344555543 446677788899999999888877644 78888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRV  300 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  300 (423)
                      ...+.+.|++++|...++...+.  .|+   .......+...+..+++...+....... +++...+..+...+...|+.
T Consensus       185 ~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         185 SCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence            88888988888776555433321  111   1223334455666777777777776653 33445566667777778888


Q ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhh
Q 014502          301 DELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFR  369 (423)
Q Consensus       301 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~  369 (423)
                      ++|...+.+..+.  .|+.... |..+...|...|+.++|.+.+++..+  +.|.++..|..+...+.-
T Consensus       259 ~~a~~~~~~~~~~--~p~~~~~-~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         259 LESCKELQELEPE--NKWCLLT-IILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHCTT--CHHHHHH-HHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CchHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHhH
Confidence            8888888888763  3544332 77788888899999999999998887  556666777766555553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.4e-08  Score=85.42  Aligned_cols=95  Identities=7%  Similarity=-0.099  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014502          145 VFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGS  224 (423)
Q Consensus       145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  224 (423)
                      +|..+..+|.+.|++++|++.|++..+..  +-+..+|..+..++.+.|++++|++.|++..+.... +..++..+...|
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence            34444445555555555555555554411  123344555555555555555555555555544322 334444455555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 014502          225 LKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       225 ~~~g~~~~a~~~~~~m~~  242 (423)
                      ...|++++|.+.|+...+
T Consensus       116 ~~~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHh
Confidence            555555555555555444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.8e-08  Score=84.70  Aligned_cols=202  Identities=12%  Similarity=-0.064  Sum_probs=133.9

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      ...+|..+...|.+.|++++|.+.|++..+... -++.+|+.+..+|.+.|++++|++.|++..+..  +-+..++..+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg  112 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHH
Confidence            345788888999999999999999999988642 367899999999999999999999999998732  23456788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLD  266 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  266 (423)
                      .++...|++++|.+.|+...+.... +......+..++.+.+..+.+..+..........+  ..++ ++..+.......
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~  188 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQ  188 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHH
Confidence            9999999999999999998887532 45554445555666666666666666555533222  2222 222222211111


Q ss_pred             ----HHHHHHHHHHhCCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 014502          267 ----RVKSFLKFLLGGGWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEV  319 (423)
Q Consensus       267 ----~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  319 (423)
                          .+...+.....  ..|+ ..+|..+...|...|++++|.+.|++....  .|+.
T Consensus       189 ~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~  242 (259)
T d1xnfa_         189 TLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  242 (259)
T ss_dssp             HHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             HHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence                11111111111  1111 235556777788888888888888887764  3544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.2e-08  Score=89.44  Aligned_cols=274  Identities=9%  Similarity=-0.058  Sum_probs=182.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH---HccC-------CHHHHHHHHHHHHhcCCCCCCH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICAC---LCSG-------DVVTALSLFEIMVSSEEYKPNS  179 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~---~~~g-------~~~~A~~~~~~m~~~~~~~p~~  179 (423)
                      ...++....+....++|.+++++..+.  .|+ ...|+..-..+   ...+       ++++|+.+++...+.  -+-+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcH
Confidence            444444444445568999999999876  344 44565544433   3332       367888888888762  23456


Q ss_pred             HhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014502          180 KTYDAFISGFSSLG--NVDAMNKWYAANIAAGFSVNVQTYE-SLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVL  256 (423)
Q Consensus       180 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  256 (423)
                      ..|..+..++...+  ++++|...+.+..+.... +...+. .....+...+.+++|++.++...+.. +-+...|..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~  185 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            66777766666655  478999999988876533 555554 44467777899999999998887765 34577788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC
Q 014502          257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR  336 (423)
Q Consensus       257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~  336 (423)
                      ..+...|++++|...+....+.  .|+   .......+...+..+++...+.......  |+.... +..+...+...|+
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~--~~~~~~-~~~l~~~~~~~~~  257 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR--AEPLFR-CELSVEKSTVLQS  257 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC--CCCSSS-CCCCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC--cchhhH-HHHHHHHHHHHhh
Confidence            8888889888877665544432  122   1223344566777788888887776643  322211 5566777788889


Q ss_pred             hhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccc-hHHHHHHHHhCCCccc-HHHHHHHHHHHH
Q 014502          337 LDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYD-RLDLFLDHIKGSYKLR-RATYDFLVAGYR  402 (423)
Q Consensus       337 ~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~~~~l~~~~~  402 (423)
                      .++|...+.+..+  ..|.+...+..+...+...|+.+ +.+.+...++.  .|+ ..-|..+...+.
T Consensus       258 ~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            9999999888876  34556777788889999999885 67777776653  454 344555554444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.6e-06  Score=68.87  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD  231 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  231 (423)
                      .+...|++++|++.|+++.     +|+..+|..+..+|...|++++|++.|++..+.... +...|..+..+|.+.|+++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence            3455667777776666542     355566666667777777777777777776665533 5666666666777777777


Q ss_pred             HHHHHHHHHHH
Q 014502          232 SVDRFYEEMMS  242 (423)
Q Consensus       232 ~a~~~~~~m~~  242 (423)
                      +|++.|++...
T Consensus        88 ~A~~~~~kAl~   98 (192)
T d1hh8a_          88 LAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.5e-06  Score=74.10  Aligned_cols=199  Identities=9%  Similarity=0.014  Sum_probs=107.7

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCC-CCCHHhHH
Q 014502          113 CLIALSGKVQNVPFAMHVFTSMEAQ----GIKP-DSAVFNSLICACLCSGDVVTALSLFEIMVSS---EEY-KPNSKTYD  183 (423)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~~~~  183 (423)
                      .....|...|++++|.+.|.+..+.    +-++ -..+|+.+..+|.+.|++++|.+.+++..+.   .+. .....++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3456777888888888888777542    1111 1346777778888888888888777765431   110 01123445


Q ss_pred             HHHHHHH-hcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-HH
Q 014502          184 AFISGFS-SLGNVDAMNKWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-----SI-PI  251 (423)
Q Consensus       184 ~li~~~~-~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~~  251 (423)
                      .+...|. ..|++++|++.+++..+.    +-.+ -..+|..+...+.+.|++++|++.|++........     .. ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            5555553 357777777777765432    1111 13345666677777777777777777765532111     11 12


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-cC---HHhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 014502          252 LEKVLEGLCARRKLDRVKSFLKFLLGGGWK-IN---ENMAQKLVKCYCE--LGRVDELEEQLETLT  311 (423)
Q Consensus       252 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~---~~~~~~li~~~~~--~g~~~~a~~~~~~~~  311 (423)
                      +...+..+...|+++.|...+++..+.... ++   ......++.++..  .+.+++|...|+.+.
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            233334455667777777777666554211 11   1233444444443  233555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.2e-06  Score=67.03  Aligned_cols=124  Identities=10%  Similarity=-0.077  Sum_probs=84.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ...+...|++++|++.|.++.    +|+..+|..+...|.+.|++++|++.|++..+.+ +-+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            345567788888888877542    5667777778888888888888888888877654 34466777777788888888


Q ss_pred             HHHHHHHHHHHhCCC--------------ccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          266 DRVKSFLKFLLGGGW--------------KIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~--------------~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      ++|.+.|++......              .++ ..++..+..++.+.|++++|.+.++...+..
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            888888877754210              001 2334455566677777777777777666644

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.1e-06  Score=61.96  Aligned_cols=101  Identities=10%  Similarity=0.014  Sum_probs=53.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCC
Q 014502          257 EGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDR  336 (423)
Q Consensus       257 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~  336 (423)
                      ..+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...++...+.+  |+.... |..+..++...|+
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-~~~~g~~~~~~~~   86 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKG-YSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH-HHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhH-HHHHHHHHHHccC
Confidence            34455555555555555555532 2344455555555666666666666666555532  333222 5555556666666


Q ss_pred             hhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          337 LDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       337 ~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      +++|+..|++..+  ..|+++..+..+
T Consensus        87 ~~~A~~~~~~a~~--~~p~~~~~~~~l  111 (117)
T d1elwa_          87 FEEAKRTYEEGLK--HEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            6666666666554  334444444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=2.3e-05  Score=66.48  Aligned_cols=164  Identities=9%  Similarity=-0.073  Sum_probs=85.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHH
Q 014502          187 SGFSSLGNVDAMNKWYAANIAA----GFSV-NVQTYESLIHGSLKARDFDSVDRFYEEMMS----LGII-PSIPILEKVL  256 (423)
Q Consensus       187 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~-p~~~~~~~li  256 (423)
                      ..|...+++++|.+.|.+..+.    +-.+ -..+|+.+..+|.+.|++++|.+.+++..+    .|.. ....++..+.
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence            3455556666666666554432    1111 124556666666666666666666665432    1110 0122344444


Q ss_pred             HHHH-hcCCHHHHHHHHHHHHhC----CCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHH
Q 014502          257 EGLC-ARRKLDRVKSFLKFLLGG----GWKIN-ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPE----VLLHFFSG  326 (423)
Q Consensus       257 ~~~~-~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~~~  326 (423)
                      ..|. ..|++++|.+.+++..+.    +.++. ..++..+...|...|++++|...++++........    .....+..
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence            4443 346777777776665431    11111 23456666777777777777777777665322111    00011334


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC
Q 014502          327 IIRLYALSDRLDDVEYSVGRMGKQ  350 (423)
Q Consensus       327 li~~~~~~g~~~~a~~~~~~m~~~  350 (423)
                      .+..+...|+++.|...+++..+.
T Consensus       205 ~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         205 KGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            444556667777777777776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.1e-05  Score=58.06  Aligned_cols=12  Identities=33%  Similarity=0.656  Sum_probs=4.3

Q ss_pred             CCHHHHHHHHHH
Q 014502          193 GNVDAMNKWYAA  204 (423)
Q Consensus       193 ~~~~~a~~~~~~  204 (423)
                      |++++|+..|++
T Consensus        17 g~~~eAi~~~~~   28 (117)
T d1elwa_          17 GNIDDALQCYSE   28 (117)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            333333333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.4e-05  Score=61.11  Aligned_cols=91  Identities=12%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      .+.|.+.|++++|+..|++..+.... +...|..+...|...|++++|++.|++..+.. +-+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            34455555566666665555555422 45555555555555566666666555555433 22344555555555555666


Q ss_pred             HHHHHHHHHHHhC
Q 014502          266 DRVKSFLKFLLGG  278 (423)
Q Consensus       266 ~~a~~~~~~~~~~  278 (423)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            6665555555553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.3e-05  Score=61.16  Aligned_cols=91  Identities=14%  Similarity=0.048  Sum_probs=52.9

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCC
Q 014502          115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGN  194 (423)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~  194 (423)
                      ...|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|++..+..  +-+..+|..+..++...|+
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCC
Confidence            445556666666666666666543 2245566666666666666666666666665421  2234556666666666666


Q ss_pred             HHHHHHHHHHHHHC
Q 014502          195 VDAMNKWYAANIAA  208 (423)
Q Consensus       195 ~~~a~~~~~~m~~~  208 (423)
                      +++|.+.+++....
T Consensus        94 ~~eA~~~~~~a~~~  107 (159)
T d1a17a_          94 FRAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            66666666666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=6.4e-06  Score=65.59  Aligned_cols=97  Identities=10%  Similarity=-0.053  Sum_probs=43.4

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 014502          177 PNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIP-SIPILEKV  255 (423)
Q Consensus       177 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l  255 (423)
                      |+...+......+.+.|++++|+..|.+..+..+. +...|+.+..+|.+.|++++|+..|++..+.  .| +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            33334444444444444444444444444443321 3444444444444444444444444444332  22 23344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 014502          256 LEGLCARRKLDRVKSFLKFLL  276 (423)
Q Consensus       256 i~~~~~~g~~~~a~~~~~~~~  276 (423)
                      ..+|...|++++|...|++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            444444444444444444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.3e-06  Score=65.64  Aligned_cols=99  Identities=8%  Similarity=-0.006  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014502          141 PDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESL  220 (423)
Q Consensus       141 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  220 (423)
                      |+...+......|.+.|++++|+..|++..+..  +.+...|..+..+|.+.|++++|+..|++..+.... +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence            455556666667777777777777777665521  334556666777777777777777777776654322 46667777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 014502          221 IHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       221 i~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      ..+|.+.|++++|+..|++..+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777777766543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=7.5e-06  Score=59.25  Aligned_cols=92  Identities=14%  Similarity=0.099  Sum_probs=39.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCccCH-HhHHHHHHHHH
Q 014502          220 LIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRK---LDRVKSFLKFLLGGGWKINE-NMAQKLVKCYC  295 (423)
Q Consensus       220 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~  295 (423)
                      +++.+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|..+++++......|+. .++..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4444444455555555555444433 2333444444444443322   22344444444443222221 13334444444


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 014502          296 ELGRVDELEEQLETLTK  312 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~  312 (423)
                      +.|++++|.+.|+++.+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            44555555554444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.15  E-value=0.0013  Score=54.23  Aligned_cols=225  Identities=12%  Similarity=-0.021  Sum_probs=124.9

Q ss_pred             CHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhH
Q 014502          107 CLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTY  182 (423)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~  182 (423)
                      |+..+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+..... .+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-cc---ccchh
Confidence            44556666666667777777777777777765   55555556666654    4567777777777665 22   33333


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014502          183 DAFISGFSS----LGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSL----KARDFDSVDRFYEEMMSLGIIPSIPILEK  254 (423)
Q Consensus       183 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  254 (423)
                      ..+...+..    ..+.+.|...++...+.|..   .....+...+.    .......+...+......   .+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence            333333322    45567777777776665532   22222222222    234455566666555442   34455555


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 014502          255 VLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCNQSPEVLLHFFSG  326 (423)
Q Consensus       255 li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~  326 (423)
                      +...+..    ..+...+..+++...+.|   +......+...|..    ..++++|...|+...+.|. |  ..  +..
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-~--~a--~~~  219 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-G--GG--CFN  219 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-H--HH--HHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccC-H--HH--HHH
Confidence            5555553    345566666666666654   34444445444544    4567777777777766552 1  11  334


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHhCCC
Q 014502          327 IIRLYAL----SDRLDDVEYSVGRMGKQGL  352 (423)
Q Consensus       327 li~~~~~----~g~~~~a~~~~~~m~~~~~  352 (423)
                      |...|.+    ..+.++|.+.|++..+.|.
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            4444443    2356677777777766553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.7e-05  Score=57.37  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=39.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Q 014502          255 VLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHFFSGIIRLY  331 (423)
Q Consensus       255 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~  331 (423)
                      +++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|..+++++...+..|+.. .+|..+..+|
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~-~~~~~Lg~~y   82 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR-DYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH-HHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHH
Confidence            3444444445555555555444432 2233444444444443322   223444444444422222111 1133444444


Q ss_pred             HhcCChhHHHHHHHHHHh
Q 014502          332 ALSDRLDDVEYSVGRMGK  349 (423)
Q Consensus       332 ~~~g~~~~a~~~~~~m~~  349 (423)
                      .+.|++++|++.|++..+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            455555555555555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.12  E-value=1.7e-05  Score=56.51  Aligned_cols=85  Identities=7%  Similarity=-0.027  Sum_probs=35.6

Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014502          152 ACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFD  231 (423)
Q Consensus       152 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  231 (423)
                      .+.+.|++++|+..|++..+..  +-+...|..+..++.+.|++++|+..|++..+.... +..+|..+...|...|+++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHH
Confidence            3344444444444444444311  112334444444444444444444444444443221 3444444444444444444


Q ss_pred             HHHHHHHH
Q 014502          232 SVDRFYEE  239 (423)
Q Consensus       232 ~a~~~~~~  239 (423)
                      +|++.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.7e-05  Score=57.11  Aligned_cols=130  Identities=9%  Similarity=-0.052  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGI-IPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC  293 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  293 (423)
                      ..+....+.+.+.|++++|+..|++...... .+.               ..+.-......+       -..+|+.+..+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~---------------~~~~~~~~~~~~-------~~~~~~nla~~   71 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---------------FSNEEAQKAQAL-------RLASHLNLAMC   71 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---------------CCSHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc---------------cchHHHhhhchh-------HHHHHHHHHHH
Confidence            3444555677778888888888877654210 000               000000011111       12356667888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhcc
Q 014502          294 YCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCA  371 (423)
Q Consensus       294 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~  371 (423)
                      |.+.|++++|...++..++.  .|+.... |..+..+|...|++++|...|++..+  +.|+++.....+.....+.+
T Consensus        72 y~k~~~~~~A~~~~~~al~~--~p~~~~a-~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          72 HLKLQAFSAAIESCNKALEL--DSNNEKG-LSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHH
T ss_pred             HHhhhhcccccchhhhhhhc--cccchhh-hHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999998884  4655443 78888899999999999999999988  55777777766655554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.01  E-value=2.8e-05  Score=55.27  Aligned_cols=89  Identities=12%  Similarity=-0.080  Sum_probs=50.0

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcC
Q 014502          114 LIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLG  193 (423)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~  193 (423)
                      +...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|+..|++..+.  -+.+...|..+...|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence            344455566666666666665554211 4556666666666666666666666665541  1223455555666666666


Q ss_pred             CHHHHHHHHHHH
Q 014502          194 NVDAMNKWYAAN  205 (423)
Q Consensus       194 ~~~~a~~~~~~m  205 (423)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666666554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=0.0029  Score=53.76  Aligned_cols=272  Identities=8%  Similarity=0.032  Sum_probs=167.0

Q ss_pred             CCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHH
Q 014502          106 SCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAF  185 (423)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  185 (423)
                      ||..--..+.+.|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+++.+.       -+..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHH
Confidence            566666778888889999999999997654         3677888889999999998887654       256688888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKL  265 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  265 (423)
                      ...+.+......+     .+.......+......++..|-..|.+++...+++...... .++...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence            8888888776543     22233334455666788899999999999999998775432 567778888999888764 3


Q ss_pred             HHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCchHHHHHHHHHHHHHhcCCh
Q 014502          266 DRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN--------QSPEVLLHFFSGIIRLYALSDRL  337 (423)
Q Consensus       266 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~~~li~~~~~~g~~  337 (423)
                      ++..+.++..   +...|   ...++..|-+.+.++++.-++..+....        ..++.+.  ....+..+.+.+++
T Consensus       149 ~kl~e~l~~~---s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~--~~~f~e~~~k~~N~  220 (336)
T d1b89a_         149 QKMREHLELF---WSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK--EGQFKDIITKVANV  220 (336)
T ss_dssp             HHHHHHHHHH---STTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC--HHHHHHHHHHCSST
T ss_pred             HHHHHHHHhc---cccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhh--HHHHHHHHHccCCh
Confidence            4444433322   11222   3346778888999999988888765411        1122222  34456667777777


Q ss_pred             hHHHHHHHHHHhCCCCCCChHhHHHHHHHHh-------------hccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhc
Q 014502          338 DDVEYSVGRMGKQGLSFKSAEDVEMVICSYF-------------RCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRA  404 (423)
Q Consensus       338 ~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  404 (423)
                      +...++..-..+.     +|...+.++....             +.++..-+.-|.+.....  -+....+.+...|...
T Consensus       221 e~~~~~i~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~  293 (336)
T d1b89a_         221 ELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITE  293 (336)
T ss_dssp             HHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCc
Confidence            7776666655542     1555554444433             333333333333443321  1356788999999999


Q ss_pred             CChhHHHHHHH
Q 014502          405 GLSGKLDSVIN  415 (423)
Q Consensus       405 g~~~~a~~~~~  415 (423)
                      ++++.-.+..+
T Consensus       294 ~d~~~l~~~i~  304 (336)
T d1b89a_         294 EDYQALRTSID  304 (336)
T ss_dssp             TCHHHHHHHHH
T ss_pred             chhHHHHHHHH
Confidence            99776555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.0002  Score=54.96  Aligned_cols=60  Identities=15%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          217 YESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       217 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      |+.+..+|.+.|++++|+..++...... +.+...|..+..+|...|++++|...|++..+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444455555555555554444432 22344444444555555555555555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1e-05  Score=74.40  Aligned_cols=95  Identities=11%  Similarity=-0.154  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHH
Q 014502          214 VQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKC  293 (423)
Q Consensus       214 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  293 (423)
                      ...+..+...+.+.|+.++|...++......  | ..++..+...+...|++++|...|++..+.. +.+...|+.+...
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            3344444445555555555555444332210  0 1234444444444555555555555544431 1223445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 014502          294 YCELGRVDELEEQLETLTK  312 (423)
Q Consensus       294 ~~~~g~~~~a~~~~~~~~~  312 (423)
                      +...|+..+|...|.+...
T Consensus       196 ~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHHh
Confidence            5555555555555554444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00011  Score=53.46  Aligned_cols=93  Identities=11%  Similarity=0.101  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHH
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLG--IIPS----IPILEKVLE  257 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~li~  257 (423)
                      .+...+.+.|++++|++.|.+..+.+.. +..+|..+..+|.+.|++++|++.++++.+..  ....    ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555554322 45555555555555555555555555544311  0000    123444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 014502          258 GLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       258 ~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .+...+++++|.+.++....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            45555555555555555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.85  E-value=0.00038  Score=52.26  Aligned_cols=123  Identities=10%  Similarity=0.013  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHH
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLG----IIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKL  290 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l  290 (423)
                      ..+..-.+.+.+.|++++|+..|.+....-    ..++.....                 ....       ....+|..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~~~~Nl   73 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN-------IEISCNLNL   73 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh-------HHHHHHhhH
Confidence            344555667777888888888887766421    011111000                 0000       112356667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHH
Q 014502          291 VKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICS  366 (423)
Q Consensus       291 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~  366 (423)
                      ..+|.+.|++++|.+.++.+.+.  .|+..-. |..+..+|...|++++|...|++..+  +.|.++.....+-.+
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~--~p~~~ka-~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKI--DKNNVKA-LYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHH
T ss_pred             HHHHHHhcccchhhhhhhccccc--cchhhhh-hHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            77888888888888888888774  3544332 77888888888888888888888877  456666665554433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=0.00038  Score=53.77  Aligned_cols=59  Identities=12%  Similarity=-0.043  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014502          181 TYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEM  240 (423)
Q Consensus       181 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  240 (423)
                      .+..+...+.+.|++++|+..++++...... +...|..++.+|.+.|+.++|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445555555566666666666655555422 5555566666666666666666655554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.0073  Score=51.22  Aligned_cols=261  Identities=10%  Similarity=0.112  Sum_probs=147.1

Q ss_pred             HHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 014502           77 LITSL-QSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLC  155 (423)
Q Consensus        77 li~~~-~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  155 (423)
                      +..-| +.|.++.|..+    +..+        .-|..++..+.+.++++.|.+++.+..      +..+|..+...+.+
T Consensus        20 i~~~c~~~~lye~A~~l----Y~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~   81 (336)
T d1b89a_          20 VGDRCYDEKMYDAAKLL----YNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD   81 (336)
T ss_dssp             ---------CTTTHHHH----HHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHH----HHhC--------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence            33335 77888888888    4432        237778888888888888888776442      67788888888887


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014502          156 SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDR  235 (423)
Q Consensus       156 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  235 (423)
                      ......|.     +.. .....+......++..|-..|.+++...+++...... ..+...++-++..|++.+ .++..+
T Consensus        82 ~~e~~la~-----i~~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          82 GKEFRLAQ-----MCG-LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             TTCHHHHH-----HTT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             CcHHHHHH-----HHH-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHH
Confidence            77665542     222 2233455566778888888888888888888765432 446677888888888764 344444


Q ss_pred             HHHHHHHCCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 014502          236 FYEEMMSLGIIPSIP----------ILEKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEE  305 (423)
Q Consensus       236 ~~~~m~~~~~~p~~~----------~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~  305 (423)
                      .++....   .-|..          .|.-++-.|.+.|+++.|..+.   .+  ..++..-...++..+.+..+.+...+
T Consensus       154 ~l~~~s~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~  225 (336)
T d1b89a_         154 HLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYR  225 (336)
T ss_dssp             HHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred             HHHhccc---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHH
Confidence            4433211   12211          1233344444445554443322   22  12333334445666777777776666


Q ss_pred             HHHHHHhCCCCCchHHHH---------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchH
Q 014502          306 QLETLTKCNQSPEVLLHF---------FSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRL  376 (423)
Q Consensus       306 ~~~~~~~~~~~p~~~~~~---------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  376 (423)
                      +.....+.  .|+....+         ..-++..+.+.+++.-....++...+.|    +....+++...|...++.+..
T Consensus       226 ~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~~l  299 (336)
T d1b89a_         226 AIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQAL  299 (336)
T ss_dssp             HHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhHHH
Confidence            66655542  24332100         1233444455555555555555544433    255667777777777776544


Q ss_pred             H
Q 014502          377 D  377 (423)
Q Consensus       377 ~  377 (423)
                      +
T Consensus       300 ~  300 (336)
T d1b89a_         300 R  300 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.80  E-value=0.00057  Score=51.25  Aligned_cols=61  Identities=13%  Similarity=0.003  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      +|+.+..+|.+.|++++|++.++...+.. +.+..+|..+..++...|++++|...|+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555666666666666666555443 33455555566666666666666666666555

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.77  E-value=0.00031  Score=53.74  Aligned_cols=81  Identities=7%  Similarity=0.007  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHHHH
Q 014502          286 MAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC  365 (423)
Q Consensus       286 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~  365 (423)
                      +|..+..+|.+.|++++|...++...+.  .|+.... |..+..+|...|++++|...|++..+  +.|+++.....+-.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a-~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKG-LYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            4666777888899999999999988874  4555443 77778889999999999999999887  55777777666655


Q ss_pred             HHhhcc
Q 014502          366 SYFRCA  371 (423)
Q Consensus       366 ~~~~~~  371 (423)
                      ...+.+
T Consensus       141 ~~~~~~  146 (168)
T d1kt1a1         141 CQKKAK  146 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.00031  Score=53.79  Aligned_cols=80  Identities=4%  Similarity=-0.061  Sum_probs=60.2

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          284 ENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       284 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      ...+..+..+|.+.|++++|...++.+.+  ..|+.... |..+..+|...|++++|.+.|++..+  +.|+++.....+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a-~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l  151 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKA-LYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhH-HHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            44566677888888999999999988887  44655433 77888888899999999999988887  456667766666


Q ss_pred             HHHHh
Q 014502          364 ICSYF  368 (423)
Q Consensus       364 ~~~~~  368 (423)
                      ..+..
T Consensus       152 ~~~~~  156 (169)
T d1ihga1         152 LKVKQ  156 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00018  Score=52.26  Aligned_cols=97  Identities=11%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCC-----HHhHHHH
Q 014502          111 YACLIALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPN-----SKTYDAF  185 (423)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~l  185 (423)
                      +..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|++.++++.+...-.+.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            33455556666666666666666666532 24556666666666666666666666665431100011     1244455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 014502          186 ISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       186 i~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      ...+...+++++|++.|+.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            55556666666666666655443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.75  E-value=0.0013  Score=50.10  Aligned_cols=58  Identities=10%  Similarity=0.104  Sum_probs=26.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          184 AFISGFSSLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       184 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      .+..+|.+.|++++|+..++...+... .+..+|..+..++...|++++|...|++..+
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444444332 1344444444444444444444444444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.70  E-value=0.0087  Score=48.95  Aligned_cols=223  Identities=10%  Similarity=-0.037  Sum_probs=154.3

Q ss_pred             hhhHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhc----CCChhHHHHHHHHHHHCCCCCCHHH
Q 014502           71 QFSWDALITS-LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGK----VQNVPFAMHVFTSMEAQGIKPDSAV  145 (423)
Q Consensus        71 ~~~~~~li~~-~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~  145 (423)
                      +..+..|=.. ...+++.+|.+.|    ++..+.+  |..++..|...|..    ..++..|...+......+   ++..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~----~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a   72 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYF----EKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG   72 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH----HHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccch
Confidence            3344444333 7889999999995    5544444  56667677777765    678999999999988875   4555


Q ss_pred             HHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014502          146 FNSLICACLC----SGDVVTALSLFEIMVSSEEYKPNSKTYDAFISGFS----SLGNVDAMNKWYAANIAAGFSVNVQTY  217 (423)
Q Consensus       146 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~  217 (423)
                      ...+...+..    ..+.+.|...++.... .|.   ......+...+.    .......+...+......   .+...+
T Consensus        73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~-~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~  145 (265)
T d1ouva_          73 CHLLGNLYYSGQGVSQNTNKALQYYSKACD-LKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGC  145 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhh-hhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchh
Confidence            5555555443    5678899999998877 432   222333333333    245567788888777664   366777


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHhHHH
Q 014502          218 ESLIHGSLK----ARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCA----RRKLDRVKSFLKFLLGGGWKINENMAQK  289 (423)
Q Consensus       218 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~  289 (423)
                      ..+...|..    ..+...+...++...+.|   +......+-..|..    ..++++|..+|++..+.|   +...+..
T Consensus       146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~  219 (265)
T d1ouva_         146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN  219 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence            778887775    467778888888887755   44555555555544    578999999999999987   4556666


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 014502          290 LVKCYCE----LGRVDELEEQLETLTKCNQ  315 (423)
Q Consensus       290 li~~~~~----~g~~~~a~~~~~~~~~~~~  315 (423)
                      |..+|.+    ..+.++|.+.|++..+.|.
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            7777765    3478899999999888764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=0.00061  Score=52.04  Aligned_cols=61  Identities=15%  Similarity=0.077  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 014502          216 TYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG  277 (423)
Q Consensus       216 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  277 (423)
                      .|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            44444555555555555555555555433 23344555555555555555555555555555

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=0.00074  Score=52.05  Aligned_cols=71  Identities=6%  Similarity=-0.030  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccCHHh
Q 014502          215 QTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLG-----GGWKINENM  286 (423)
Q Consensus       215 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~  286 (423)
                      ..+..+...+.+.|++++|+..++++.+.. +-+...|..++.+|...|+.++|.+.|+++.+     .|+.|...+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            445566666777777777777777666544 34566677777777777777777777666532     366666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.2e-05  Score=70.17  Aligned_cols=168  Identities=7%  Similarity=-0.081  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHH
Q 014502          124 VPFAMHVFTSMEAQGIKPDSAVFNSLICAC--LCSGDVVTALSLFEIMVSSEEYKP-NSKTYDAFISGFSSLGNVDAMNK  200 (423)
Q Consensus       124 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~  200 (423)
                      +..+.+.++...+....++..-.......+  ...+.++.|+..+....   ++.| +...+..+...+.+.|+.++|..
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~  141 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK  141 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence            445666676666544334433322222222  22344555555444433   2333 45567778888889999999998


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 014502          201 WYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLLGGGW  280 (423)
Q Consensus       201 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~  280 (423)
                      .+.......   ...++..+.+.+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+.+... 
T Consensus       142 ~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-  216 (497)
T d1ya0a1         142 PQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-  216 (497)
T ss_dssp             -CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-
T ss_pred             HHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence            887766432   23567788899999999999999999988754 3345789999999999999999999999999875 


Q ss_pred             ccCHHhHHHHHHHHHhcCC
Q 014502          281 KINENMAQKLVKCYCELGR  299 (423)
Q Consensus       281 ~~~~~~~~~li~~~~~~g~  299 (423)
                      +|...++..|...+.+..+
T Consensus       217 ~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         217 FPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             BCCHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            5678888888887766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.45  E-value=0.00015  Score=60.06  Aligned_cols=51  Identities=18%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014502          191 SLGNVDAMNKWYAANIAAGFSVNVQTYESLIHGSLKARDFDSVDRFYEEMMS  242 (423)
Q Consensus       191 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  242 (423)
                      +.|++++|++.+++..+..+. |...+..+...|+..|++++|.+.|+...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345555555555555554422 455555555555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.42  E-value=0.00011  Score=60.90  Aligned_cols=121  Identities=7%  Similarity=-0.139  Sum_probs=66.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCCCCHhHHHHHHHHHhcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCH
Q 014502           81 LQSSSPKKAQLVLEWRLDKMLKGNESCLDEYACLIALSGKVQNVPFAMHVFTSMEAQGIKPD-SAVFNSLICACLCSGDV  159 (423)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~m~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  159 (423)
                      ++.|++++|+..    +++..+..+.|...+..+...++..|++++|.+.|+...+.  .|+ ...+..+...+...+..
T Consensus         7 L~~G~l~eAl~~----l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           7 LSEGQLQQALEL----LIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             TTTTCHHHHHHH----HHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcccc
Confidence            566777777777    45566666667777777777777777777777777777665  333 33343333333322222


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          160 VTALSLFEIMVSSEEYKPNSKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       160 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      +++..-...-.. .+-+++...+......+...|+.++|.+.++++.+.
T Consensus        81 ~~a~~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          81 KDFAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            222211111110 111122223333445566667777777777766654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.39  E-value=0.00057  Score=50.70  Aligned_cols=114  Identities=11%  Similarity=-0.004  Sum_probs=67.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHh----------cCChhHHHHHHHHHHhCCCCCCChHhHHHHHH
Q 014502          296 ELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYAL----------SDRLDDVEYSVGRMGKQGLSFKSAEDVEMVIC  365 (423)
Q Consensus       296 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l~~  365 (423)
                      +.+.+++|...|+...+.  .|+.... +..+-.+|..          .+.+++|+..|++..+  +.|+++.+|..+..
T Consensus         9 r~~~fe~A~~~~e~al~~--~P~~~~~-~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKS--NPLDADN-LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhh--CCcchHH-HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence            344456666666666552  3444332 3344434432          2344677888888777  55777888888887


Q ss_pred             HHhhcccc------------chHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 014502          366 SYFRCAAY------------DRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKFAEY  422 (423)
Q Consensus       366 ~~~~~~~~------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~  422 (423)
                      +|...|..            ++.+.|.+.+.  +.|+...|..-+..+      .+|.+++.+..++|+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            77766542            23445555444  357766665544444      467788888777775

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=0.00097  Score=49.39  Aligned_cols=15  Identities=7%  Similarity=-0.443  Sum_probs=6.8

Q ss_pred             CCHHHHHHHHHHHHh
Q 014502          157 GDVVTALSLFEIMVS  171 (423)
Q Consensus       157 g~~~~A~~~~~~m~~  171 (423)
                      +.+++|+..|+...+
T Consensus        11 ~~fe~A~~~~e~al~   25 (145)
T d1zu2a1          11 LLFEQIRQDAENTYK   25 (145)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHh
Confidence            344444444444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.23  E-value=0.0039  Score=46.58  Aligned_cols=92  Identities=8%  Similarity=-0.026  Sum_probs=46.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCCC----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 014502          150 ICACLCSGDVVTALSLFEIMVSSEEYKPN----------SKTYDAFISGFSSLGNVDAMNKWYAANIAA-----GFSVN-  213 (423)
Q Consensus       150 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~-  213 (423)
                      ...+...|++++|+..|++..+...-.|+          ...|+.+..+|.+.|++++|.+.+++..+.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33444556666666666665541111111          234555666666666666666666554431     11111 


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          214 ----VQTYESLIHGSLKARDFDSVDRFYEEMM  241 (423)
Q Consensus       214 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~  241 (423)
                          ...|+.+..+|.+.|++++|++.|++..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                1134445555666666666666555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0061  Score=41.03  Aligned_cols=72  Identities=10%  Similarity=-0.037  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCChHhHHHH
Q 014502          289 KLVKCYCELGRVDELEEQLETLTKCN-----QSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSAEDVEMV  363 (423)
Q Consensus       289 ~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  363 (423)
                      .+...+.+.|++++|...|++..+..     ..++. ..+++.+..+|.+.|++++|++.+++..+  +.|+++.+++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~-~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~Nl   86 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK-VSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccH-HHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence            45566666667776666666654321     11111 12266667777777777777777777766  446666655544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.92  E-value=0.014  Score=43.40  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          287 AQKLVKCYCELGRVDELEEQLETLT  311 (423)
Q Consensus       287 ~~~li~~~~~~g~~~~a~~~~~~~~  311 (423)
                      +..+..+|...|++++|...|++..
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566666666666555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0076  Score=40.53  Aligned_cols=62  Identities=10%  Similarity=-0.051  Sum_probs=27.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014502          147 NSLICACLCSGDVVTALSLFEIMVSSE----EYKPN-SKTYDAFISGFSSLGNVDAMNKWYAANIAA  208 (423)
Q Consensus       147 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  208 (423)
                      -.+...+.+.|++++|...|++..+..    ...++ ..+++.|..++.+.|++++|+..+++..+.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            344444445555555555554443210    00111 234444555555555555555555555444

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.53  E-value=0.063  Score=37.20  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 014502          253 EKVLEGLCARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCN  314 (423)
Q Consensus       253 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  314 (423)
                      ...++.+...|+-++..++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+.-++|
T Consensus        90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            333444444444444444444444432 3344444444444445555444444444444444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.71  E-value=0.2  Score=35.49  Aligned_cols=16  Identities=6%  Similarity=-0.108  Sum_probs=7.6

Q ss_pred             CHHHHHHHHHHHHhCC
Q 014502          264 KLDRVKSFLKFLLGGG  279 (423)
Q Consensus       264 ~~~~a~~~~~~~~~~g  279 (423)
                      +.++|.++++...+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4444444444444444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.24  Score=35.09  Aligned_cols=49  Identities=8%  Similarity=0.066  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 014502          263 RKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCE----LGRVDELEEQLETLTKCN  314 (423)
Q Consensus       263 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~  314 (423)
                      .+.++|.++|++..+.|   ++.....|...|..    ..+.++|.++|+...+.|
T Consensus        73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            34555555555555544   22223333333333    234555555555554443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.51  E-value=0.21  Score=34.49  Aligned_cols=140  Identities=10%  Similarity=-0.016  Sum_probs=82.5

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhH
Q 014502          260 CARRKLDRVKSFLKFLLGGGWKINENMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDD  339 (423)
Q Consensus       260 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~  339 (423)
                      ...|..++..+++.+.....   +..-||.+|.-....-+-+-..++++.+-+.   .|.            ..+++...
T Consensus        13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl------------s~C~Nlk~   74 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL------------DKCQNLKS   74 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG------------GGCSCTHH
T ss_pred             HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc------------hhhhcHHH
Confidence            44577777777777776642   4444555555555555555556666655431   111            12333333


Q ss_pred             HHHHHHHHHhCCCCCCChHhHHHHHHHHhhccccchHHHHHHHHhCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 014502          340 VEYSVGRMGKQGLSFKSAEDVEMVICSYFRCAAYDRLDLFLDHIKGSYKLRRATYDFLVAGYRRAGLSGKLDSVINEMKF  419 (423)
Q Consensus       340 a~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  419 (423)
                      ....+-.+   +.   ....++..+....++|..++++.+..-+.+.-+|++...-.+..+|.+.|...++.+++.+.-+
T Consensus        75 vv~C~~~~---n~---~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN---NT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT---TC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---cc---hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33333221   11   1445556666677777777666555544445577778888888888888888888888888888


Q ss_pred             cCCC
Q 014502          420 AEYM  423 (423)
Q Consensus       420 ~g~~  423 (423)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            8763

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.38  E-value=0.56  Score=30.60  Aligned_cols=46  Identities=9%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014502          231 DSVDRFYEEMMSLGIIPSIPILEKVLEGLCARRKLDRVKSFLKFLL  276 (423)
Q Consensus       231 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~  276 (423)
                      .++.+-++.+...++.|++....+.+.+|.+.+++..|.++++-..
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3444444444444555555555555555555555555555555444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.71  E-value=2.1  Score=29.38  Aligned_cols=72  Identities=4%  Similarity=-0.231  Sum_probs=37.0

Q ss_pred             cCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCh
Q 014502          282 INENMAQKLVKCYCELGR---VDELEEQLETLTKCNQSPEVLLHFFSGIIRLYALSDRLDDVEYSVGRMGKQGLSFKSA  357 (423)
Q Consensus       282 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  357 (423)
                      +...+--...-++.+...   .+++..+|+++.+.+  |......+-.|.-+|.+.|++++|.+.++.+.+  +.|.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence            333333334444444333   445666666666532  432221234455566677777777777777666  444433

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.32  E-value=1.8  Score=28.11  Aligned_cols=62  Identities=15%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH
Q 014502          123 NVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVSSEEYKPNSKTYDAFI  186 (423)
Q Consensus       123 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  186 (423)
                      +.-++.+-++.+-...+.|++.+..+.+++|-+.+++..|.++|+-.+..  +.++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence            44455666666666667777777777777777777777777777766642  233344555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=9  Score=32.89  Aligned_cols=52  Identities=6%  Similarity=-0.130  Sum_probs=24.6

Q ss_pred             HHHHhcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 014502          115 IALSGKVQNVPFAMHVFTSMEAQGIKPDSAVFNSLICACLCSGDVVTALSLFEIMVS  171 (423)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  171 (423)
                      +..+.+.++++.....+.     ..+++...-.....+....|+.++|...+...-.
T Consensus        79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~  130 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL  130 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            444455555544333221     1123444444555555556666666555555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.70  E-value=4.9  Score=27.45  Aligned_cols=72  Identities=13%  Similarity=0.008  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCccCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 014502          247 PSIPILEKVLEGLCAR---RKLDRVKSFLKFLLGGGWKINE-NMAQKLVKCYCELGRVDELEEQLETLTKCNQSPEVLL  321 (423)
Q Consensus       247 p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  321 (423)
                      |...|--...-++.+.   .+.++++.+++++.+.+ +.+. ..+--|.-+|.+.|++++|.+.++.+.+  +.|+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q  108 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ  108 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence            4444433334444443   34567778888777643 2232 3444566677888888888888888877  4465543