Citrus Sinensis ID: 014516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MSTRENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHSEP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHccccHHHccEccccHHHHHHHHccccccccccccccccEEEEcccccEEHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mstrensyTEAEALNLLAQLERIldldplidevgfihpsqfATLKEEigdslssedrdhestsfwirdhklgistqILIPVYKAAKHAFISALRqyktpgnfsgksqddTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLsyspkseqawSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKsrnwsglhvadnscFHYRRRLMLRNLegfcytqdnnssgyfvETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVscqskpkasvdididslMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKqipeyqgidiqekLRAGVGDVTRMlkrscpdrsslWDYLVGYHSEP
Flexible Loop (DISEMBL)
mstrensyTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHEStsfwirdhklgISTQILIPVYKAAKHAFISALRqyktpgnfsGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELkksrnwsglhvadnscfhYRRRLMLRNLEGFCytqdnnssgyFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTrmlkrscpdrsslwdylvgyhsep
Low Complexity Region (SEG)
MSTRENSYTeaealnllaqleRILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHSEP
Disordered region (IsUnstruct)
************ALNLLAQLERILDLDPLIDEVGFIHPSQFATL******************SFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGY****
Disordered Region (DISOPRED)
**************NLLAQLERILDLDPLIDEVGFIHPSQFATLKEEI*********DHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPG*********TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG*************VETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYH***
Disordered Region (DISEMBL)
*********EAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEE**************TSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHSEP
Disordered Region (DISPRO)
********TEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTRENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHSEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q7Z6K3	402	Protein prenyltransferase	yes	no	0.456	0.480	0.329	1e-25
A3KPW7	426	Protein prenyltransferase	yes	no	0.541	0.537	0.307	5e-24
Q0IHB3	432	Protein prenyltransferase	N/A	no	0.434	0.425	0.303	9e-23
A1L3L1	431	Protein prenyltransferase	N/A	no	0.579	0.568	0.281	5e-22
O93829	371	Geranylgeranyl transferas	N/A	no	0.257	0.293	0.262	0.0002
P29702	375	Protein farnesyltransfera	no	no	0.271	0.306	0.264	0.0006
P49354	379	Protein farnesyltransfera	no	no	0.271	0.303	0.264	0.0008

>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 119/237 (50%), Gaps = 44/237 (18%)

Query: 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI 180
            LLLL+ DF TAWN RK ++ +  L PI   +LHL  L L+  PKS + W HRRWV+  +
Sbjct: 93  TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQL 150

Query: 181 SR-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
            +           N  T+     Q +I+ E E+  + A R   NY AW+HR W++  + +
Sbjct: 151 IQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAK 210

Query: 225 EQV---LDELKKSRNWSGLHVADNSCFHYRRRLM------------------LRNLEGFC 263
             V   LDEL  +++W+ +HV+D+S FHYR+ L+                  LR+     
Sbjct: 211 LDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALV 270

Query: 264 YTQDNNSSGYFVETY----QIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHM 316
             +D  ++    E       + +EE++++  LI  Y G E LW HRR +  YL  H+
Sbjct: 271 PPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI-FYLQHHL 326

Homo sapiens (taxid: 9606)

>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Danio rerio GN=ptar1 PE=2 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 124/276 (44%), Gaps = 47/276 (17%)

Query: 119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN 178
           +  LLLL+ DF TAWN RK ++    L P    +L+L  L LS  PKS + W HRRWV+ 
Sbjct: 91  TSTLLLLNPDFTTAWNVRKELLQCGVLNP--EKDLYLGKLALSKHPKSPETWIHRRWVLQ 148

Query: 179 MISRNCST-----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221
            + + CS                  LQ  ++ E  +  + A R   NY AW+HR W++  
Sbjct: 149 RLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQN 208

Query: 222 MTRE--QVL-DELKKSRNWSGLHVADNSCFHYRRRLM-------------------LRNL 259
           M +   +VL DEL  +R W  +HV+D+S FHYR+ L+                     N 
Sbjct: 209 MAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLKALAKELSPAAEKDVHTSQQPNG 268

Query: 260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATH 319
           E      D+N     +   +++ EE+     LI+ Y G E LW HRR +     +    H
Sbjct: 269 ENTATASDDNHHKDVMP--RLFHEEIQLCTDLIESYPGHETLWCHRRHVFYLWHQWRREH 326

Query: 320 LLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
           +     QS      D+    L+  ELC  +S S  +
Sbjct: 327 MQGAGSQSPALTHTDV----LLSKELCDNNSISQAM 358

Danio rerio (taxid: 7955)

>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein 1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 43/227 (18%)

Query: 121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN-- 178
            LLLL+ DF TAWN RK ++ +  L P+   +L L  L L+  PKS + W HRRW +   
Sbjct: 93  TLLLLNPDFTTAWNVRKELIQSGTLNPV--KDLQLGKLALTKFPKSPETWIHRRWALQRL 150

Query: 179 --------------MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
                         +       +Q I+E E  +  + A R   NY +W+HR W+V  +  
Sbjct: 151 VQELVVAAVVDKDAICPETSERIQAIVEEEMHVCCEAAGRYPSNYNSWSHRIWVVQHLGN 210

Query: 225 EQ---VLDELKKSRNWSGLHVADNSCFHYRRRL--------------------MLRNLEG 261
            +   ++DEL  +++W  +HV+D+S FHYR+ L                    ++ N E 
Sbjct: 211 LKATLLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLSKTLKDFDNVGAITDLIANEEN 270

Query: 262 FCYTQDN--NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR 306
            C  +D   N +    +   + +EE+D N  L+  + G E LW HRR
Sbjct: 271 LCLPRDGEANWNQICFDLPYLLEEEMDLNRELVDSFPGHETLWCHRR 317

Xenopus laevis (taxid: 8355)

>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein 1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 82/327 (25%)

Query: 27  DPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGIST---QILIPVYK 83
           +P IDE+G I P   AT               +  +   + ++KLG+ +   + L+P   
Sbjct: 25  NPNIDEIGLI-PCPEAT---------------YNRSPIVLVENKLGVESWCIKFLLPYV- 67

Query: 84  AAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK 143
              H  +   RQ K   N     +D+ + +     +  LLLL+ DF TAWN RK ++ + 
Sbjct: 68  ---HNKLLLYRQKKLWLN-----RDELIDV-----TCTLLLLNPDFTTAWNVRKELIQSG 114

Query: 144 RLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR------------NCST----L 187
            L P+   +L L  L L+  PKS + W HRRWV+  + +             C      +
Sbjct: 115 TLNPV--KDLQLGKLALTKFPKSPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERI 172

Query: 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV---LDELKKSRNWSGLHVAD 244
           Q I++ E  +  + A R   NY +W+HR W++  +    V   +DEL  +++W  +HV+D
Sbjct: 173 QTIVQEEMHVCYEAAGRYPSNYNSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSD 232

Query: 245 NSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV--------------ETYQIW--------- 281
           +S FHY R+ +L++L   C T  ++ +   V              E   IW         
Sbjct: 233 HSGFHY-RQFLLKSL--LCKTLKDSDNVTAVPDLIANEKNPCLPREGEAIWNQICFDLPY 289

Query: 282 --KEELDWNESLIKQYVGREALWLHRR 306
             +EE+  N  L+  Y G E LW HRR
Sbjct: 290 LLEEEMKLNRELLDSYPGHETLWCHRR 316

Xenopus laevis (taxid: 8355)

>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKR----------LLPILMDELHLSALVLSYS 163
           E +I +  LL+++ +F T WN R+ I+ N               IL  +L+   + L   
Sbjct: 48  EALIKTNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKF 107

Query: 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
           PK    W+HRRW++  + +    + W  + E  +V K+ +  + N+  W++R ++V  M 
Sbjct: 108 PKCYWIWNHRRWLLFELVK-LGKVNW--KYEFGVVSKLLDLDQRNFHGWHYRRFVVKNME 164

Query: 224 RE 225
            E
Sbjct: 165 LE 166

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 21/136 (15%)

Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E++  + ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 128 TVWHFRRVLL--KSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 179

Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
             +E E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 180 --QELEFIADILTQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 231

Query: 247 CFHYRRRLMLRNLEGF 262
            ++ +R  ++ N  G+
Sbjct: 232 VWN-QRYFVISNTTGY 246

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 21/136 (15%)

Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E++    ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183

Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
             +E E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 235

Query: 247 CFHYRRRLMLRNLEGF 262
            ++ +R  ++ N  G+
Sbjct: 236 VWN-QRYFVISNTTGY 250

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
255561945	431	protein farnesyltransferase alpha subuni	0.971	0.953	0.603	1e-135
302143621	480	unnamed protein product [Vitis vinifera]	0.981	0.864	0.587	1e-132
225453064	425	PREDICTED: uncharacterized protein LOC10	0.962	0.957	0.591	1e-132
224125714	434	predicted protein [Populus trichocarpa]	0.962	0.937	0.593	1e-131
356503264	433	PREDICTED: protein prenyltransferase alp	0.959	0.937	0.533	1e-115
356523032	438	PREDICTED: uncharacterized protein LOC10	0.964	0.931	0.536	1e-114
449477812	425	PREDICTED: uncharacterized protein LOC10	0.947	0.943	0.516	1e-109
449470340	425	PREDICTED: uncharacterized protein LOC10	0.947	0.943	0.514	1e-108
52354113	420	hypothetical protein AT1G10095 [Arabidop	0.964	0.971	0.52	1e-108
79587734	420	protein prenylyltransferase [Arabidopsis	0.964	0.971	0.52	1e-108

>gi|255561945|ref|XP_002521981.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis] gi|223538785|gb|EEF40385.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/434 (60%), Positives = 319/434 (73%), Gaps = 23/434 (5%)

Query: 1   MSTRENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDS---LSSE-D 56
           MS  E+       + LL Q E ILD DPLIDEVGFIHPSQF  L  E+      LSS+ D
Sbjct: 1   MSENESVGNGKGGIGLLNQFELILDSDPLIDEVGFIHPSQFTALSSELQAKDAILSSKID 60

Query: 57  R----DHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLA 112
           +    DHESTSFW RDHKLGIS  +++P+Y AAK AF++A++ +K   N S   +DD+  
Sbjct: 61  KVNVLDHESTSFWNRDHKLGISMHVILPLYTAAKDAFMNAIKGFKRVENLS--LEDDSCG 118

Query: 113 I-----EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE 167
                 EVM HSKALLLLSCDF TAWNSRKLI+S K+ +P+ ++EL LSALVLSYSPKSE
Sbjct: 119 FSSLESEVMKHSKALLLLSCDFGTAWNSRKLILSKKQYMPMFIEELLLSALVLSYSPKSE 178

Query: 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227
           Q+W HRRWVI MIS  CSTLQ I+ +ESELVEKIAERSKMNYRAWNHRCWLV +MTREQV
Sbjct: 179 QSWCHRRWVIKMISGKCSTLQEILGKESELVEKIAERSKMNYRAWNHRCWLVGYMTREQV 238

Query: 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDW 287
           L ELKKSR W+GLHVAD+SCFHYR RLMLR LE FC  QD+ SS + VE  Q+W+EEL W
Sbjct: 239 LLELKKSRYWAGLHVADSSCFHYRMRLMLRILEQFCCKQDDESSDHDVEICQMWQEELQW 298

Query: 288 NESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCL 347
           NE LI+ YVGREALWL+RRFLS+  I+H  + ++     S+ K+ V  +I+  +DHELCL
Sbjct: 299 NEELIELYVGREALWLYRRFLSLCWIRHFISDIIH---HSEHKSRVVANINEFLDHELCL 355

Query: 348 VHSCSTTIADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRS 405
           V+S S TI D ++E  +AQA+HSA Y+LWL KQIPE QGI++++KL A  G+   ML  +
Sbjct: 356 VNSWS-TIPDDDYEDFQAQAVHSATYILWLMKQIPESQGIELKKKLNA--GNWKTMLNVA 412

Query: 406 CPDRSSLWDYLVGY 419
           C +RSSLWD L  Y
Sbjct: 413 CAERSSLWDSLATY 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143621|emb|CBI22374.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/432 (58%), Positives = 317/432 (73%), Gaps = 17/432 (3%)

Query: 2   STRENSYTEAE-ALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDR--- 57
           +T E   TE E  ++LL QLE IL+ DPLIDEVGFIHPSQF  L EE G  L S +    
Sbjct: 50  ATVEQKMTEEEKGVDLLNQLEHILESDPLIDEVGFIHPSQFFILNEEAGGVLPSSNHHLL 109

Query: 58  --DHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS---GKSQDDTLA 112
             +   +SFW RDHKLGIS  IL+P+Y+AAK+AF++A+ QYK  GN S    KS D+ ++
Sbjct: 110 QSEDGISSFWNRDHKLGISIDILLPLYRAAKNAFMAAIAQYKAHGNPSVKEEKSGDENIS 169

Query: 113 I----EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ 168
                EVM HS+ALLLLS DF TAWNSRKL++S K+ L + MDE  LSALVLSYSPKSEQ
Sbjct: 170 CHLESEVMKHSRALLLLSSDFGTAWNSRKLVLSKKQDLSMFMDEFLLSALVLSYSPKSEQ 229

Query: 169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVL 228
           AWSHRRWVI MI+ N + LQ ++ +ESELVEKIAE+SKMNYRAWNHRCWLV +MT EQVL
Sbjct: 230 AWSHRRWVIKMIAGNYTYLQEVLGKESELVEKIAEKSKMNYRAWNHRCWLVFYMTGEQVL 289

Query: 229 DELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN-SSGYFVETYQIWKEELDW 287
            EL KSR+W+GLHVADN CFHYRRRLMLR LE  CY QD N SSGY +E Y++WKEELDW
Sbjct: 290 HELDKSRSWAGLHVADNCCFHYRRRLMLRILECSCYKQDPNASSGYNIEIYRVWKEELDW 349

Query: 288 NESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCL 347
           N+ LI++Y+GRE LWLHRRFLS+  IKH AT    +SC S+ K   + DI + +D+E+  
Sbjct: 350 NKMLIERYIGREGLWLHRRFLSLCWIKHFATDGGDLSCHSELKTDANHDISNFLDNEIQY 409

Query: 348 VHSCSTTIADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRS 405
           VHSC    +D +FE  E QA+ SA Y+LWLTKQ+ E +GI++Q+K     G++  +LK+ 
Sbjct: 410 VHSCLAIPSD-DFEDVETQAVFSATYILWLTKQMYECEGIELQQKQLIRGGELKILLKKH 468

Query: 406 CPDRSSLWDYLV 417
            P++S LWD ++
Sbjct: 469 RPEKSFLWDSII 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453064|ref|XP_002268977.1| PREDICTED: uncharacterized protein LOC100255283 [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/423 (59%), Positives = 313/423 (73%), Gaps = 16/423 (3%)

Query: 10  EAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDR-----DHESTSF 64
           E + ++LL QLE IL+ DPLIDEVGFIHPSQF  L EE G  L S +      +   +SF
Sbjct: 4   EEKGVDLLNQLEHILESDPLIDEVGFIHPSQFFILNEEAGGVLPSSNHHLLQSEDGISSF 63

Query: 65  WIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS---GKSQDDTLAI----EVMI 117
           W RDHKLGIS  IL+P+Y+AAK+AF++A+ QYK  GN S    KS D+ ++     EVM 
Sbjct: 64  WNRDHKLGISIDILLPLYRAAKNAFMAAIAQYKAHGNPSVKEEKSGDENISCHLESEVMK 123

Query: 118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI 177
           HS+ALLLLS DF TAWNSRKL++S K+ L + MDE  LSALVLSYSPKSEQAWSHRRWVI
Sbjct: 124 HSRALLLLSSDFGTAWNSRKLVLSKKQDLSMFMDEFLLSALVLSYSPKSEQAWSHRRWVI 183

Query: 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW 237
            MI+ N + LQ ++ +ESELVEKIAE+SKMNYRAWNHRCWLV +MT EQVL EL KSR+W
Sbjct: 184 KMIAGNYTYLQEVLGKESELVEKIAEKSKMNYRAWNHRCWLVFYMTGEQVLHELDKSRSW 243

Query: 238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQD-NNSSGYFVETYQIWKEELDWNESLIKQYV 296
           +GLHVADN CFHYRRRLMLR LE  CY QD N SSGY +E Y++WKEELDWN+ LI++Y+
Sbjct: 244 AGLHVADNCCFHYRRRLMLRILECSCYKQDPNASSGYNIEIYRVWKEELDWNKMLIERYI 303

Query: 297 GREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIA 356
           GRE LWLHRRFLS+  IKH AT    +SC S+ K   + DI + +D+E+  VHSC    +
Sbjct: 304 GREGLWLHRRFLSLCWIKHFATDGGDLSCHSELKTDANHDISNFLDNEIQYVHSCLAIPS 363

Query: 357 DANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWD 414
           D +FE  E QA+ SA Y+LWLTKQ+ E +GI++Q+K     G++  +LK+  P++S LWD
Sbjct: 364 D-DFEDVETQAVFSATYILWLTKQMYECEGIELQQKQLIRGGELKILLKKHRPEKSFLWD 422

Query: 415 YLV 417
            ++
Sbjct: 423 SII 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125714|ref|XP_002319657.1| predicted protein [Populus trichocarpa] gi|222858033|gb|EEE95580.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/423 (59%), Positives = 306/423 (72%), Gaps = 16/423 (3%)

Query: 4   RENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTS 63
           +E+   +  +L+LL + E IL+ DPLIDEVGFIHPSQF TL +E   SL     +HE  +
Sbjct: 3   KESMILKGNSLSLLNEFELILESDPLIDEVGFIHPSQFVTLNKEASSSL-----EHEDAN 57

Query: 64  FWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDD-TLAIEVMIHSKAL 122
           FW RDHKL IST +L+P+YKA K  F+ A+ QYK   N S  S D+  L  EVM HSKAL
Sbjct: 58  FWSRDHKLAISTDVLLPLYKAVKDVFMHAISQYKRHENLSDASWDEGNLESEVMKHSKAL 117

Query: 123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR 182
           LLLSCDF TAWN RKLIVS K+ + I +DEL LSALVLSYSPKSE+AW HRRWVI M++ 
Sbjct: 118 LLLSCDFGTAWNFRKLIVSKKQHMLIFLDELFLSALVLSYSPKSEKAWCHRRWVIKMVAG 177

Query: 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV 242
            CST+Q I+ +ESELVEKIAERSKMNYRAWNHRCWLVS+MT EQVL ELKKSRNW+GLHV
Sbjct: 178 KCSTMQDIVGKESELVEKIAERSKMNYRAWNHRCWLVSYMTTEQVLHELKKSRNWAGLHV 237

Query: 243 ADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALW 302
           ADNSCFHYR RLMLR  E  C+  ++ +S    E Y+IW+EELDWNE+LIK YVGREALW
Sbjct: 238 ADNSCFHYRTRLMLRIREDHCHKLEDGTSDGNDEIYRIWQEELDWNEALIKCYVGREALW 297

Query: 303 LHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFE- 361
           LHRRFLS+  I+H  T+L   S     K+ ++ DI   MD+EL L +SCS TI D  FE 
Sbjct: 298 LHRRFLSLSWIRHFTTNLGDTSNYRVCKSRINADIGIFMDNELHLANSCS-TIPDNEFED 356

Query: 362 -EAQAIHSAAYMLWLT-----KQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDY 415
            +AQA++SA Y+LWLT     +QI + QGI++QEK    +G +  +L  +CP+RS L D 
Sbjct: 357 FQAQALYSATYILWLTTLFFHQQISDSQGIELQEK--PNLGSLKTVLNMACPERSFLSDI 414

Query: 416 LVG 418
             G
Sbjct: 415 STG 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503264|ref|XP_003520431.1| PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1-like [Glycine max]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/439 (53%), Positives = 297/439 (67%), Gaps = 33/439 (7%)

Query: 5   ENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEI---------------- 48
           E S++  EA++LL Q E IL+ D LIDE+GFIHPSQFA LKEE                 
Sbjct: 3   EESHSNVEAMDLLRQFEDILEFDALIDELGFIHPSQFALLKEESYISSNLSDEAIHQSAD 62

Query: 49  GDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGK--- 105
           G  +S E    ++  FW RDHKLGIST +L+P+Y+AAKH F++ L+QY+   N S K   
Sbjct: 63  GVVISEESSKQDNLYFWNRDHKLGISTHVLLPLYRAAKHVFMTTLKQYRMCDNQSDKVGI 122

Query: 106 ------SQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALV 159
                 S  D L   ++ HSK+LLLLSCDF TAWN RKLIVS K+L  + +DEL LS LV
Sbjct: 123 CLPASSSSCDHLESMLLRHSKSLLLLSCDFLTAWNCRKLIVSKKKL-SMFVDELLLSELV 181

Query: 160 LSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
           LSYSPKSEQAW+HRRWVI  IS NCS    I+ +ESELVEKIAERSKMNYRAWNHRCWL+
Sbjct: 182 LSYSPKSEQAWNHRRWVIKSISANCSNFNEILGKESELVEKIAERSKMNYRAWNHRCWLI 241

Query: 220 SFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQ 279
           S+MT EQVL ELKKSR+W+ LHVADN CFHYRRRL+L+ +E     ++  S G+  +  Q
Sbjct: 242 SYMTIEQVLYELKKSRSWAALHVADNCCFHYRRRLLLKFMENQNSVEETVSYGHNADIVQ 301

Query: 280 IWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDS 339
             K+ELDWNE+LIK+YVGREALWLHRRFLSM+++          S  SK   S+  D  +
Sbjct: 302 ALKDELDWNETLIKRYVGREALWLHRRFLSMWILDSGDA-----SYHSKEAISMHHDFGT 356

Query: 340 LMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVT 399
            + +ELCL+HSCST + D    +AQA +SA Y+LWL  QI +     + EK++    D+ 
Sbjct: 357 FLQNELCLLHSCSTFVDDFVDVQAQAAYSACYILWLKVQIAKPLESKLLEKIKD--VDLK 414

Query: 400 RMLKRSCPDRSSLWDYLVG 418
            +L +SCP+RSSL++Y + 
Sbjct: 415 TLLDKSCPERSSLFNYFMN 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523032|ref|XP_003530146.1| PREDICTED: uncharacterized protein LOC100807426 [Glycine max]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/442 (53%), Positives = 304/442 (68%), Gaps = 34/442 (7%)

Query: 5   ENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEE--IGDSLSSE------D 56
           E S+++ EA++LL QLE IL+ D LIDE+GFIHPSQF+ LKEE  I  +LS E      D
Sbjct: 3   EESHSKVEAMDLLRQLEDILESDALIDELGFIHPSQFSLLKEESDISSNLSDEAIHQSAD 62

Query: 57  R--------DHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGK--- 105
           R          ++  FW RDHKLGIST +L+P+Y+AAKHAF++  +QY+   N S K   
Sbjct: 63  RVVISEESSKQDNLYFWNRDHKLGISTHVLLPLYRAAKHAFMTTFKQYRMCDNQSDKDGM 122

Query: 106 -----SQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVL 160
                S  D L   +M HSK+LLLLSCDF TAWN RKLIVS K+ L + +DEL LS LVL
Sbjct: 123 CLPAFSSCDHLESILMRHSKSLLLLSCDFMTAWNCRKLIVSKKKKLSMFVDELLLSELVL 182

Query: 161 SYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220
           SYSPKSEQAW+HRRWVI  IS NCS  + I+ +ESELVEKIAE SKMNYRAWNHRCWL+S
Sbjct: 183 SYSPKSEQAWNHRRWVIKSISANCSNFKEILGKESELVEKIAESSKMNYRAWNHRCWLIS 242

Query: 221 FMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQI 280
           +MT +QVL ELKKSR+W+ LHVADN CFHYRRRL+L+ +E     ++  S G+  +  Q 
Sbjct: 243 YMTNKQVLYELKKSRSWAALHVADNCCFHYRRRLLLKFMENQNSVEETISCGHNADIVQA 302

Query: 281 WKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSL 340
            K+ELDWNE+LIK+YVGREALWLHRRFLSM  I +        S  SK   S+  D  + 
Sbjct: 303 LKDELDWNEALIKRYVGREALWLHRRFLSMCWINNFLLDSGDASYHSKEAISMHHDFGTF 362

Query: 341 MDHELCLVHSCSTTIADANF--EEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDV 398
           + +ELCL+H  S+T  D +F   +AQA++SA+Y+LWL  Q+P+     ++ KL   + DV
Sbjct: 363 LRNELCLLH--SSTFVDDDFVDVQAQAVYSASYILWLKVQVPK----SLENKLLQKIKDV 416

Query: 399 TR--MLKRSCPDRSSLWDYLVG 418
               +L +SCP+RSSL++Y + 
Sbjct: 417 DLKILLDKSCPERSSLFNYFMN 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477812|ref|XP_004155130.1| PREDICTED: uncharacterized protein LOC101225667 [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/428 (51%), Positives = 302/428 (70%), Gaps = 27/428 (6%)

Query: 5   ENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDS--LSSEDRDHEST 62
           EN+  +A+A +LL+Q E+IL  DPLIDE+GF+HPSQF  L EE+G S   SSE   +E++
Sbjct: 3   ENTDVQAKATDLLSQFEQILQSDPLIDEIGFVHPSQFVKLNEELGSSKSASSEITGNENS 62

Query: 63  SFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN-----FSGKSQ---DDTLAI- 113
            FW++ HKLGISTQIL P+Y AA++ F++A R+Y++  N      +G S     ++L I 
Sbjct: 63  EFWLQHHKLGISTQILHPLYIAARNTFMAATRKYRSACNQDDQTMAGNSLCGLSNSLNIV 122

Query: 114 --EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS 171
             +VM HS+ALLLLSCDF TAWNSRK I+S K+ L + +DEL LS LVLS+ PKSEQAWS
Sbjct: 123 ESDVMKHSRALLLLSCDFGTAWNSRKFILSKKQNLSLYLDELLLSRLVLSFFPKSEQAWS 182

Query: 172 HRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL 231
           HRRWVI ++     +++ I+++ESELVE+IAE SKMNYRAWNHR WLVS+M+REQ L EL
Sbjct: 183 HRRWVIKLLVEKGYSVEEILKKESELVERIAEMSKMNYRAWNHRRWLVSYMSREQALYEL 242

Query: 232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESL 291
            ++R W+ LHVADN CFHYRRRLML+ L      + N  SG  +  YQ+WKEELDW+E L
Sbjct: 243 NETRKWAALHVADNCCFHYRRRLMLKILAESSCAEIN--SGLTLGIYQVWKEELDWDEML 300

Query: 292 IKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSC 351
           IK+Y+GREALW+HRRFLS+  ++H AT+    +     +  + +DI   +++EL LV+SC
Sbjct: 301 IKRYIGREALWIHRRFLSVCWMRHFATNNKIFN----QEGGIKLDIPFFIENELNLVNSC 356

Query: 352 STTIADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDR 409
           S  +++ +FE  +AQA  S AY+LWL K  P    + + +KLR    ++  +LK+ CP+R
Sbjct: 357 S-FLSNEDFEDFQAQATCSGAYLLWLIKNCP---NLKVDDKLR--TYNLNTLLKKVCPER 410

Query: 410 SSLWDYLV 417
             LWD L+
Sbjct: 411 YPLWDSLI 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470340|ref|XP_004152875.1| PREDICTED: uncharacterized protein LOC101220717 [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/428 (51%), Positives = 300/428 (70%), Gaps = 27/428 (6%)

Query: 5   ENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDS--LSSEDRDHEST 62
           EN+  +A+A +LL+Q E+IL  DPLIDE+GF+HPSQF  L EE+G S   SSE   +E++
Sbjct: 3   ENTDVQAKATDLLSQFEQILQSDPLIDEIGFVHPSQFVKLNEELGSSKSASSEITGNENS 62

Query: 63  SFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN-----FSGKSQ---DDTLAI- 113
            FW++ HKLGISTQIL P+Y AA++ F++A R+Y++  N      +G S     ++L I 
Sbjct: 63  EFWLQHHKLGISTQILHPLYIAARNTFMAATRKYRSSCNQDDQTMAGNSLCGLSNSLNIV 122

Query: 114 --EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS 171
             +VM HS+ALLLLSCDF TAWNSRK I+S K+ L + +DEL LS LVLS+ PKSEQAWS
Sbjct: 123 ESDVMKHSRALLLLSCDFGTAWNSRKFILSKKQNLSLYLDELLLSKLVLSFFPKSEQAWS 182

Query: 172 HRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL 231
           HRRWVI ++     +++ I+++ESELVE+IAE SKMNYRAWNHR WLVS+M+REQ L EL
Sbjct: 183 HRRWVIKLLVEKGYSVEEILKKESELVERIAEMSKMNYRAWNHRRWLVSYMSREQALYEL 242

Query: 232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESL 291
            ++R W+ LHVADN CFHYRRRLML+ L      + N  SG  +  YQ+WKEELDW+E L
Sbjct: 243 NETRKWAALHVADNCCFHYRRRLMLKILAESSCAEIN--SGLTLGIYQVWKEELDWDEML 300

Query: 292 IKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSC 351
           IK+Y+GREALW+HRRFLS+  ++H AT     +     +  + +DI   +++EL LV+SC
Sbjct: 301 IKRYIGREALWIHRRFLSVCWMRHFATDNKIFN----QEGGIKLDIPFFIENELNLVNSC 356

Query: 352 STTIADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDR 409
           S  +++ +FE  + QA  S AY+LWL K  P    + + +KLR    ++  +LK+ CP+R
Sbjct: 357 S-FLSNEDFEDFQTQATCSGAYLLWLIKNCP---NLKVDDKLR--TYNLNTLLKKVCPER 410

Query: 410 SSLWDYLV 417
             LWD L+
Sbjct: 411 YPLWDSLI 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52354113|gb|AAU44377.1| hypothetical protein AT1G10095 [Arabidopsis thaliana]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/425 (52%), Positives = 288/425 (67%), Gaps = 17/425 (4%)

Query: 4   RENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTS 63
           ++   +E +  +LL Q E +L+ DPLIDEVGFIHPSQF  L +E G S   +  +  S+ 
Sbjct: 2   KQGPSSEDDCFSLLKQFEHVLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSK 61

Query: 64  FWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAI-------EVM 116
           FW +DHKLGIST IL+ + K AKH F+ AL++YK+ GN   +SQ   ++        +VM
Sbjct: 62  FWNQDHKLGISTDILVQLCKDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVM 121

Query: 117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWV 176
            HS+++LLLS DF TAWN+RKLI+S K  L    +EL LS L+LS SPKSE  WSHRRW+
Sbjct: 122 KHSQSVLLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWI 181

Query: 177 INMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236
           I MIS++ STLQ II +ESELVE I ERSKMNYRAW+HRCWLVS+MT EQV+ EL KS+ 
Sbjct: 182 IKMISQSFSTLQEIITKESELVESIGERSKMNYRAWHHRCWLVSYMTIEQVIQELNKSKR 241

Query: 237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGY-FVETYQIWKEELDWNESLIKQY 295
           W+GLHVAD+SCFHYRRRLML+ LE   Y +   SS Y   E  +IWKEELDWNE L+++Y
Sbjct: 242 WAGLHVADSSCFHYRRRLMLKILESL-YVK--GSSAYDKTEARKIWKEELDWNEELVERY 298

Query: 296 VGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
           VGREALWLHRRFLS+  I + A +    S ++     ++ +I   +D+E+ L+ S S T+
Sbjct: 299 VGREALWLHRRFLSLNWIMYFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTV 357

Query: 356 ADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLW 413
            D  FE  +AQA+H+A Y LWLTK IP    + ++EKL  G   V  +L     +R SL 
Sbjct: 358 PDTKFEDFQAQALHAAVYTLWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLL 414

Query: 414 DYLVG 418
            +LV 
Sbjct: 415 HHLVN 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79587734|ref|NP_849630.3| protein prenylyltransferase [Arabidopsis thaliana] gi|3540189|gb|AAC34339.1| Hypothetical protein [Arabidopsis thaliana] gi|332190420|gb|AEE28541.1| protein prenylyltransferase [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/425 (52%), Positives = 287/425 (67%), Gaps = 17/425 (4%)

Query: 4   RENSYTEAEALNLLAQLERILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTS 63
           ++   +E +  +LL Q E +L+ DPLIDEVGFIHPSQF  L +E G S   +  +  S+ 
Sbjct: 2   KQGPSSEDDCFSLLKQFEHVLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSK 61

Query: 64  FWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAI-------EVM 116
           FW +DHKLGIST IL+ + K AKH F+ AL++YK+ GN   +SQ   ++        +VM
Sbjct: 62  FWNQDHKLGISTDILVQLCKDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVM 121

Query: 117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWV 176
            HS+++LLLS DF TAWN+RKLI+S K  L    +EL LS L+LS SPKSE  WSHRRW+
Sbjct: 122 KHSQSVLLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWI 181

Query: 177 INMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236
           I MIS++ STLQ II +ESELVE I ERSKMNYRAW HRCWLVS+MT EQV+ EL KS+ 
Sbjct: 182 IKMISQSFSTLQEIITKESELVESIGERSKMNYRAWYHRCWLVSYMTIEQVIQELNKSKR 241

Query: 237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGY-FVETYQIWKEELDWNESLIKQY 295
           W+GLHVAD+SCFHYRRRLML+ LE   Y +   SS Y   E  +IWKEELDWNE L+++Y
Sbjct: 242 WAGLHVADSSCFHYRRRLMLKILESL-YVK--GSSAYDKTEARKIWKEELDWNEELVERY 298

Query: 296 VGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
           VGREALWLHRRFLS+  I + A +    S ++     ++ +I   +D+E+ L+ S S T+
Sbjct: 299 VGREALWLHRRFLSLNWIMYFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTV 357

Query: 356 ADANFE--EAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLW 413
            D  FE  +AQA+H+A Y LWLTK IP    + ++EKL  G   V  +L     +R SL 
Sbjct: 358 PDTKFEDFQAQALHAAVYTLWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLL 414

Query: 414 DYLVG 418
            +LV 
Sbjct: 415 HHLVN 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:1005716686	420	AT1G10095 [Arabidopsis thalian	0.917	0.923	0.533	1.6e-102
DICTYBASE|DDB_G0287077	406	DDB_G0287077 "protein prenyltr	0.836	0.871	0.263	1.4e-30
UNIPROTKB|F1P1Q8	208	PTAR1 "Uncharacterized protein	0.437	0.889	0.333	3e-21
FB|FBgn0027296	398	l(1)G0144 "lethal (1) G0144" [	0.456	0.484	0.320	7.1e-20
RGD|708369	425	Ptar1 "protein prenyltransfera	0.226	0.225	0.385	6.2e-16
UNIPROTKB|Q7Z6K3	402	PTAR1 "Protein prenyltransfera	0.245	0.258	0.368	8e-16
UNIPROTKB|F1PEG1	402	PTAR1 "Uncharacterized protein	0.390	0.410	0.323	1.5e-15
UNIPROTKB|F1SJD0	430	PTAR1 "Uncharacterized protein	0.390	0.383	0.318	3.3e-15
UNIPROTKB|J9P4Q0	429	PTAR1 "Uncharacterized protein	0.390	0.384	0.323	4.3e-15
ZFIN|ZDB-GENE-060526-17	426	ptar1 "protein prenyltransfera	0.323	0.321	0.329	1.3e-14

TAIR|locus:1005716686 AT1G10095 [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 216/405 (53%), Positives = 277/405 (68%)

Query:    23 ILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVY 82
             +L+ DPLIDEVGFIHPSQF  L +E G S   +  +  S+ FW +DHKLGIST IL+ + 
Sbjct:    21 VLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSKFWNQDHKLGISTDILVQLC 80

Query:    83 KAAKHAFISALRQYKTPGNFSGKSQDDTLAI-------EVMIHSKALLLLSCDFATAWNS 135
             K AKH F+ AL++YK+ GN   +SQ   ++        +VM HS+++LLLS DF TAWN+
Sbjct:    81 KDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVMKHSQSVLLLSSDFGTAWNA 140

Query:   136 RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERES 195
             RKLI+S K  L    +EL LS L+LS SPKSE  WSHRRW+I MIS++ STLQ II +ES
Sbjct:   141 RKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIKMISQSFSTLQEIITKES 200

Query:   196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM 255
             ELVE I ERSKMNYRAW HRCWLVS+MT EQV+ EL KS+ W+GLHVAD+SCFHYRRRLM
Sbjct:   201 ELVESIGERSKMNYRAWYHRCWLVSYMTIEQVIQELNKSKRWAGLHVADSSCFHYRRRLM 260

Query:   256 LRNLEGFCYTQDNNSSGYF-VETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIK 314
             L+ LE   Y +   SS Y   E  +IWKEELDWNE L+++YVGREALWLHRRFLS+  I 
Sbjct:   261 LKILESL-YVK--GSSAYDKTEARKIWKEELDWNEELVERYVGREALWLHRRFLSLNWIM 317

Query:   315 HMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEE--AQAIHSAAYM 372
             + A +    S ++     ++ +I   +D+E+ L+ S S T+ D  FE+  AQA+H+A Y 
Sbjct:   318 YFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTVPDTKFEDFQAQALHAAVYT 376

Query:   373 LWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLV 417
             LWLTK IP    + ++EKL  G   V  +L     +R SL  +LV
Sbjct:   377 LWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLLHHLV 418

GO:0005634 "nucleus" evidence=ISM

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

DICTYBASE|DDB_G0287077 DDB_G0287077 "protein prenyltransferase alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 101/384 (26%), Positives = 194/384 (50%)

Query:    47 EIGDSLSSEDRDH-ESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGK 105
             EIG  +SS+D D  E+  F + ++KLGIS Q +I +Y  A   F      ++   N   +
Sbjct:    30 EIGFVMSSKDYDGLENKPFVLVENKLGISFQWMIKLYSYALTYFTELKSAFEKKMNDLPE 89

Query:   106 SQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK 165
                  L  E++  ++ +LL++ +  TA N RK +++ K +     DE+ L  L+ +  PK
Sbjct:    90 RHQQLLVNELLQATRNVLLINAENLTALNLRKELINLKYIKH--KDEISLLNLIFTKHPK 147

Query:   166 SEQAWSHRRWVI-NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
             S + W+HR+WVI +   +    L +  E E  + +++AE    NY +W HR W++  ++ 
Sbjct:   148 SGEGWAHRKWVITDYFKKTGDYLDY--EIELAVCKRVAEIYPKNYYSWTHRWWILQHLSV 205

Query:   225 EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ--DNNSS-------GYFV 275
             + +L +L+   +W   +++D  C ++ R L+L +L   CY    DNN++          +
Sbjct:   206 DIILKDLETMEDWVKRNISDY-CGYHHRYLILTHLFNKCYNSNDDNNNNESKSEENSNEM 264

Query:   276 ETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDI 335
             + +++W++E ++   +I  Y G E+ W ++R L+++ ++      +A     +   S  +
Sbjct:   265 KIHKLWEDEFNFIHKIINLYPGHESSWSYKRVLTLFWLQ------IAQPIVFQRNISTTV 318

Query:   336 DIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLT----KQIPEYQGIDIQEKL 391
              I SL   E   V S    I D+++ E Q   +  Y+L +     K   ++  IDI +++
Sbjct:   319 PITSLQQ-ESQFVDSILEDI-DSSYYEQQKSFAQRYLLSIYELKFKDSADFS-IDI-DQV 374

Query:   392 RAGVGDVTRMLKRSCPDRSSLWDY 415
             +     +   LK S P++  +W+Y
Sbjct:   375 KNNYSIIINDLKISFPNQLKVWEY 398

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|F1P1Q8 PTAR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 68/204 (33%), Positives = 109/204 (53%)

Query:    68 DHKLGIST---QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLL 124
             ++KLG+ +   + L+P      H  +   RQ K   N    +Q  T  I+++  +  LLL
Sbjct:    18 ENKLGVESWCVKFLLPYV----HNKLLLYRQRKQWLNKD--AQGCTEIIKLIDTTCTLLL 71

Query:   125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC 184
             L+ DF TAWN RK ++ +  L P+   +LHL  L L+  PKS + W HR ++   +S   
Sbjct:    72 LNPDFTTAWNVRKELILSGTLSPL--KDLHLGKLALTKFPKSPETWIHRFYLFFFLSHRD 129

Query:   185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD 244
                    E E ++  + A R   NY AW+HR W++  + +  +LDEL  ++ W  +HV+D
Sbjct:   130 ------YEEEMDVCSEAAGRYPSNYNAWSHRIWVLQNVGKI-LLDELSSTKYWVSMHVSD 182

Query:   245 NSCFHYRRRLMLRNLEGFCYTQDN 268
             +S FHYR+  +L++L G     DN
Sbjct:   183 HSGFHYRQ-FLLKSLIGRTVNDDN 205

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

FB|FBgn0027296 l(1)G0144 "lethal (1) G0144" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 7.1e-20, P = 7.1e-20
 Identities = 67/209 (32%), Positives = 107/209 (51%)

Query:    68 DHKLGISTQILIPVYKAAKHAFISALRQYKTPG--NFSGKSQDDTLAIEVMIHSKALLLL 125
             +H LG+ +     VY  A    IS  RQ           + Q D+LA  + +     LL+
Sbjct:    50 EHNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLNV----ALLI 105

Query:   126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS 185
             + D  T W+ R+ +V   RL   +  EL  SALVLS  PKS +A+++RRW+ +   ++  
Sbjct:   106 NPDVTTFWHIRRQLVQKNRLS--INKELQFSALVLSIKPKSNEAFAYRRWLYSF--QSAD 161

Query:   186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD-ELKKSRNWSGLHVAD 244
              + W    E  + E+ A+R   NY AW+HR W++       +L  EL ++  +   H++D
Sbjct:   162 AIDW--PNEIGICERAADRCASNYHAWSHRQWILQ--NGPCLLQSELLRTEKFMRKHISD 217

Query:   245 NSCFHYRRRLMLRNLE-GFCYTQDNNSSG 272
              SC+HYR+ L+ R  E  F   +D+ +SG
Sbjct:   218 YSCYHYRQVLLSRAYELSFALPKDSGASG 246

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0018342 "protein prenylation" evidence=IEA

RGD|708369 Ptar1 "protein prenyltransferase alpha subunit repeat containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
 Identities = 44/114 (38%), Positives = 61/114 (53%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181
             LLLL+ DF TAWN RK ++ +  L P+   +LHL  L L+  PKS + W HRRWV+  +S
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLSPV--KDLHLGKLALTKFPKSPETWIHRRWVLQQLS 151

Query:   182 RNCST----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
             +  S                  Q II+ E E+  + A R   NY AW+HR W++
Sbjct:   152 QETSLPSSVAKGSLGVVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVL 205

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

UNIPROTKB|Q7Z6K3 PTAR1 "Protein prenyltransferase alpha subunit repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
 Identities = 45/122 (36%), Positives = 65/122 (53%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS 181
             LLLL+ DF TAWN RK ++ +  L PI   +LHL  L L+  PKS + W HRRWV+  + 
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQLI 151

Query:   182 R-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225
             +           N  T+     Q +I+ E E+  + A R   NY AW+HR W++  + + 
Sbjct:   152 QETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKL 211

Query:   226 QV 227
              V
Sbjct:   212 DV 213

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

UNIPROTKB|F1PEG1 PTAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 65/201 (32%), Positives = 97/201 (48%)

Query:    46 EEIGDSLSSEDRDHESTSFWIRDHKLGIST---QILIPVYKAAKHAFISALRQYKTPGNF 102
             +EIG     E R + S    + ++KLG+ +   + L+P      H   + L  Y+T   +
Sbjct:    30 DEIGLIPCPEARYNRSPIVLV-ENKLGVESWCVKFLLPYV----H---NKLLLYRTRKQW 81

Query:   103 SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY 162
               K   D L I+V      LLLL+ DF TAWN RK ++ +  L PI   +L+L  L L+ 
Sbjct:    82 LNK---DEL-IDVTC---TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLYLGKLALTK 132

Query:   163 SPKSEQAWSHRRWVIN-----------MISRNCSTL-----QWIIERESELVEKIAERSK 206
              PKS + W HRRWV+            M+  N  T+     Q +I  E E+  + A R  
Sbjct:   133 FPKSPETWIHRRWVLQQLIQETSLPSFMMKGNLGTIPAERTQRLIREELEVCGEAAGRYP 192

Query:   207 MNYRAWNHRCWLVSFMTREQV 227
              NY AW+HR W++  + +  V
Sbjct:   193 SNYNAWSHRIWVLQHLAKLDV 213

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|F1SJD0 PTAR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 64/201 (31%), Positives = 95/201 (47%)

Query:    46 EEIGDSLSSEDRDHESTSFWIRDHKLGIST---QILIPVYKAAKHAFISALRQYKTPGNF 102
             +EIG     E R + S    + ++KLG+ +   + L+P      H   + L  Y+T   +
Sbjct:    30 DEIGLIPCPEARYNRSPIVLV-ENKLGVESWCVKFLLPYV----H---NKLLLYRTRKQW 81

Query:   103 SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY 162
               K   D L I+V      LLLL+ DF TAWN RK ++ +  L PI   +LHL  L L+ 
Sbjct:    82 LNK---DEL-IDVTC---TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTK 132

Query:   163 SPKSEQAWSHRRWVINMISRNCST----------------LQWIIERESELVEKIAERSK 206
              PKS + W HRRWV+  + +  S                  Q +I  E E+  + A R  
Sbjct:   133 FPKSPETWIHRRWVLRQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGRYP 192

Query:   207 MNYRAWNHRCWLVSFMTREQV 227
              NY AW+HR W++  + +  V
Sbjct:   193 SNYNAWSHRIWVLQHLAKLDV 213

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|J9P4Q0 PTAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 65/201 (32%), Positives = 97/201 (48%)

Query:    46 EEIGDSLSSEDRDHESTSFWIRDHKLGIST---QILIPVYKAAKHAFISALRQYKTPGNF 102
             +EIG     E R + S    + ++KLG+ +   + L+P      H   + L  Y+T   +
Sbjct:    30 DEIGLIPCPEARYNRSPIVLV-ENKLGVESWCVKFLLPYV----H---NKLLLYRTRKQW 81

Query:   103 SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY 162
               K   D L I+V      LLLL+ DF TAWN RK ++ +  L PI   +L+L  L L+ 
Sbjct:    82 LNK---DEL-IDVTC---TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLYLGKLALTK 132

Query:   163 SPKSEQAWSHRRWVIN-----------MISRNCSTL-----QWIIERESELVEKIAERSK 206
              PKS + W HRRWV+            M+  N  T+     Q +I  E E+  + A R  
Sbjct:   133 FPKSPETWIHRRWVLQQLIQETSLPSFMMKGNLGTIPAERTQRLIREELEVCGEAAGRYP 192

Query:   207 MNYRAWNHRCWLVSFMTREQV 227
              NY AW+HR W++  + +  V
Sbjct:   193 SNYNAWSHRIWVLQHLAKLDV 213

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-060526-17 ptar1 "protein prenyltransferase alpha subunit repeat containing 1" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 51/155 (32%), Positives = 75/155 (48%)

Query:   119 SKALLLLSCDFATAWNSRKLIVSNKRLLP---ILMDELHLSALVLSYSPKSEQAWSHRRW 175
             +  LLLL+ DF TAWN RK ++    L P   + + +L LS    S      + W  +R 
Sbjct:    91 TSTLLLLNPDFTTAWNVRKELLQCGVLNPEKDLYLGKLALSKHPKSPETWIHRRWVLQRL 150

Query:   176 VINMIS------------RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
                               R C  LQ  ++ E  +  + A R   NY AW+HR W++  M 
Sbjct:   151 QKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQNMA 210

Query:   224 RE--QVL-DELKKSRNWSGLHVADNSCFHYRRRLM 255
             +   +VL DEL  +R W  +HV+D+S FHYR+ L+
Sbjct:   211 KGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLL 245

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.58	LOW CONFIDENCE prediction!
4th Layer	2.5.1.59	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002239001 SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (413 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
COG5536	328	COG5536, BET4, Protein prenyltransferase, alpha su	5e-08
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	2e-07
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	1e-05
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	4e-05

>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 19/168 (11%)

Query: 129 FATAWNSRKLIVSNKRLL-----PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN 183
           F T WN R  I+ + +++      +L +EL      L  +PK+ Q W HR+W++      
Sbjct: 65  FYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWML----EL 120

Query: 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243
                W   RE  + +K+ +    NY  W++R W++  +       +LK    ++   + 
Sbjct: 121 FPKPSW--GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIE 178

Query: 244 ----DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDW 287
               +NS +H+R   + R         D  S  Y  +  +   +++  
Sbjct: 179 TDIYNNSAWHHRYIWIERRFN----RGDVISQKYLEKELEYIFDKIFT 222

Length = 328

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 12/91 (13%)

Query: 131 TAWNSRKLIVS--NKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ 188
           T W+ R+L +   +  L      EL  +  V   +PK+ Q W HRRW+   +  + +   
Sbjct: 72  TVWHFRRLCLEALDADLEE----ELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA--- 124

Query: 189 WIIERESELVEKIAERSKMNYRAWNHRCWLV 219
               +E E   KI      NY AW+HR W++
Sbjct: 125 ---NKELEFTRKILSLDAKNYHAWSHRQWVL 152

Length = 320

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192
           W+ R+  ++ K        EL  +  +LS   K+  AWSHR+WV+  +        W  E
Sbjct: 109 WHHRRW-LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG------W--E 159

Query: 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN 236
            E E   ++ E    N  AWN R + V  +TR  +L  L+  R+
Sbjct: 160 DELEYCHQLLEEDVRNNSAWNQR-YFV--ITRSPLLGGLEAMRD 200

Length = 320

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 53/178 (29%)

Query: 153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
           L L+A V+  +P +   W  RR  +         L   +E E +  E +AE +  NY+ W
Sbjct: 57  LDLTADVIRLNPGNYTVWHFRRLCL-------EALDADLEEELDFAEDVAEDNPKNYQIW 109

Query: 213 NHRCWLVSFM-----------TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG 261
           +HR WL   +           TR+ +  + K    WS             R+ +LR L G
Sbjct: 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS------------HRQWVLRTLGG 157

Query: 262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATH 319
                              W++EL++   L+++ V   + W  R     ++I      
Sbjct: 158 -------------------WEDELEYCHQLLEEDVRNNSAWNQR----YFVITRSPLL 192

Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
PLN02789	320	farnesyltranstransferase	100.0
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	100.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	100.0
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	100.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	100.0
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	100.0
PLN02789	320	farnesyltranstransferase	99.97
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.0
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.85
PRK15359	144	type III secretion system chaperone protein SscB;	98.79
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.76
PRK15359	144	type III secretion system chaperone protein SscB;	98.5
PRK12370	553	invasion protein regulator; Provisional	98.49
PRK12370	553	invasion protein regulator; Provisional	98.45
PRK11189	296	lipoprotein NlpI; Provisional	98.4
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.36
PRK11189	296	lipoprotein NlpI; Provisional	98.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.18
KOG1126	638	consensus DNA-binding cell division cycle control	98.17
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.15
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.07
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.07
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.07
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.05
KOG1126	638	consensus DNA-binding cell division cycle control	97.87
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.83
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.79
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.73
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.73
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.62
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.61
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.55
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.42
KOG0553	304	consensus TPR repeat-containing protein [General f	97.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.37
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.35
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.26
KOG2076	895	consensus RNA polymerase III transcription factor	97.24
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.18
KOG0553	304	consensus TPR repeat-containing protein [General f	97.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.06
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.01
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.99
PRK14574	822	hmsH outer membrane protein; Provisional	96.85
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.74
PRK14574	822	hmsH outer membrane protein; Provisional	96.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.53
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	95.97
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.96
KOG1125	579	consensus TPR repeat-containing protein [General f	95.94
PRK11906	458	transcriptional regulator; Provisional	95.74
KOG2076	895	consensus RNA polymerase III transcription factor	95.73
PRK11906	458	transcriptional regulator; Provisional	95.72
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.69
PF13371	73	TPR_9: Tetratricopeptide repeat	95.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.65
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.65
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.56
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.53
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.21
PF13371	73	TPR_9: Tetratricopeptide repeat	95.14
KOG1125	579	consensus TPR repeat-containing protein [General f	95.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	94.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.72
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	94.71
KOG0495	913	consensus HAT repeat protein [RNA processing and m	94.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.52
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.28
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.15
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.1
KOG4234	271	consensus TPR repeat-containing protein [General f	94.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.03
PRK10803	263	tol-pal system protein YbgF; Provisional	94.01
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	93.98
PRK14720	906	transcript cleavage factor/unknown domain fusion p	93.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	93.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	93.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	93.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.41
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	92.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.49
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	91.41
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.95
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	90.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	90.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	90.7
KOG4234	271	consensus TPR repeat-containing protein [General f	90.11
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	90.1
PF13431	34	TPR_17: Tetratricopeptide repeat	89.49
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	89.26
KOG1128	777	consensus Uncharacterized conserved protein, conta	89.01
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	88.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	87.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.79
PRK10803	263	tol-pal system protein YbgF; Provisional	87.6
PF13431	34	TPR_17: Tetratricopeptide repeat	87.6
PRK15331	165	chaperone protein SicA; Provisional	87.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	87.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	86.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	86.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	86.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	85.55
PF13428	44	TPR_14: Tetratricopeptide repeat	84.32
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	83.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	81.12
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	80.31

>PLN02789 farnesyltranstransferase

Probab=100.00  E-value=8e-48  Score=382.77  Aligned_cols=301  Identities=21%  Similarity=0.252  Sum_probs=238.1

Q ss_pred             hccCCCCCcccccCCcccccchhhhcccCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014516           24 LDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS  103 (423)
Q Consensus        24 l~~dp~idEv~~i~~s~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~  103 (423)
                      +..+|.|++|.+||.        ..+                    .=+|....+.+.|..|...|++.++         
T Consensus         6 ~~~~~~~~d~~p~~~--------~~~--------------------~~~~~~i~y~~~~~~a~~~~ra~l~---------   48 (320)
T PLN02789          6 LSQRPEWADVTPIPQ--------DDG--------------------PNPVVPIAYTPEFREAMDYFRAVYA---------   48 (320)
T ss_pred             cccCCCcCCccccCC--------CCC--------------------CCcccceeeCHHHHHHHHHHHHHHH---------
Confidence            467899999999882        111                    0145556667999999999999887         


Q ss_pred             CCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc
Q 014516          104 GKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN  183 (423)
Q Consensus       104 ~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~  183 (423)
                          ..+.++++|.+|+++|.+||+|||||++|+.+|..++  ..+++||.+++.++..|||+|++|+||+|++.+++..
T Consensus        49 ----~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         49 ----SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             ----cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence                4577899999999999999999999999999999885  4689999999999999999999999999999988642


Q ss_pred             cChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC  263 (423)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~  263 (423)
                            ...+|+.+++++++.||||||||+||+|++.+++.  +++||++++++|+.||+|+|||+||.+++.++...  
T Consensus       123 ------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l--  192 (320)
T PLN02789        123 ------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL--  192 (320)
T ss_pred             ------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--
Confidence                  25789999999999999999999999999999976  89999999999999999999999999999876211  


Q ss_pred             ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHH
Q 014516          264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDH  343 (423)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~  343 (423)
                             .+    ...+.++|++|+.++|..+|+|+|+|+|+++++.....       ++..        ..+..+|.. 
T Consensus       193 -------~~----~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-------~l~~--------~~~~~~~~~-  245 (320)
T PLN02789        193 -------GG----LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-------ALVS--------DPEVSSVCL-  245 (320)
T ss_pred             -------cc----ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-------cccc--------chhHHHHHH-
Confidence                   00    01256789999999999999999999999999853100       0000        001223322 


Q ss_pred             HHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhh---h---------hhcchhhHHHHhhhcCcCccc
Q 014516          344 ELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQE---K---------LRAGVGDVTRMLKRSCPDRSS  411 (423)
Q Consensus       344 El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~---~---------~~~~~~~~~~~l~~~~p~r~~  411 (423)
                            +++.+.|          .+.+++.||+|.+.++.. +.++   .         ....+.+|.++|.++||||+|
T Consensus       246 ------~~~~~~~----------~s~~al~~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~  308 (320)
T PLN02789        246 ------EVLSKDS----------NHVFALSDLLDLLCEGLQ-PTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN  308 (320)
T ss_pred             ------HhhcccC----------CcHHHHHHHHHHHHhhhc-cchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence                  2222233          357889999999986521 1110   0         112689999999999999999


Q ss_pred             hhhhhhccCC
Q 014516          412 LWDYLVGYHS  421 (423)
Q Consensus       412 ~w~~~~~~~~  421 (423)
                      ||+||++.+.
T Consensus       309 yw~~~~~~~~  318 (320)
T PLN02789        309 YWAWRKSKLP  318 (320)
T ss_pred             HHHHHHHhhc
Confidence            9999998874

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-47  Score=359.07  Aligned_cols=280  Identities=19%  Similarity=0.247  Sum_probs=216.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHH
Q 014516           75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELH  154 (423)
Q Consensus        75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~  154 (423)
                      +.++..-|+.+...|++.+.             .++.|+++|++|+.+|.+||.|||+|+||+.+|.+++  .++.+||+
T Consensus        35 ~I~Yte~fr~~m~YfRAI~~-------------~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~   99 (318)
T KOG0530|consen   35 KIAYTEDFRDVMDYFRAIIA-------------KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELE   99 (318)
T ss_pred             EeeechhHHHHHHHHHHHHh-------------ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHH
Confidence            44567789999999988776             4688999999999999999999999999999999996  78999999


Q ss_pred             HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      +++.++.-|||||++|+|||++++.++..       -.+||+||..++..|.||||||+||.|+++.++.  ++.||.++
T Consensus       100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~-------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~  170 (318)
T KOG0530|consen  100 YLDEIIEDNPKNYQVWHHRRVIVELLGDP-------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYA  170 (318)
T ss_pred             HHHHHHHhCccchhHHHHHHHHHHHhcCc-------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHH
Confidence            99999999999999999999999998852       1399999999999999999999999999999976  99999999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 014516          235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIK  314 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~  314 (423)
                      ..+|+.|.+|+|||+||.|++....+.              .....++.|+.|+.++|...|.|+|+|.|.++++..   
T Consensus       171 ~~Lle~Di~NNSAWN~Ryfvi~~~~~~--------------~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~---  233 (318)
T KOG0530|consen  171 DELLEEDIRNNSAWNQRYFVITNTKGV--------------ISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL---  233 (318)
T ss_pred             HHHHHHhhhccchhheeeEEEEeccCC--------------ccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh---
Confidence            999999999999999999998764211              113578999999999999999999999999999853   


Q ss_pred             HHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHH-HHhhhhccccchhhhhhhhc
Q 014516          315 HMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYML-WLTKQIPEYQGIDIQEKLRA  393 (423)
Q Consensus       315 ~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~-Wl~~~~~~~~~~~~~~~~~~  393 (423)
                           +.+.+.        ..+...|+..       ....-|..+=+ .=+.+..+|.. =|.-+.    +  .++ +..
T Consensus       234 -----d~gl~s--------~s~vv~f~~~-------l~~~~~~~sP~-lla~l~d~~~e~~l~~~~----~--~~~-~a~  285 (318)
T KOG0530|consen  234 -----DSGLSS--------DSKVVSFVEN-------LYLQLPKRSPF-LLAFLLDLYAEDALAYKS----S--AEE-LAR  285 (318)
T ss_pred             -----ccCCcC--------CchHHHHHHH-------HhhccCCCChh-HHHHHHHHHHHHHhhccc----c--chH-HHH
Confidence                 111221        1224444432       11101111000 01122223311 111111    1  122 333


Q ss_pred             chhhHHHHhh-hcCcCccchhhhhhccCCCC
Q 014516          394 GVGDVTRMLK-RSCPDRSSLWDYLVGYHSEP  423 (423)
Q Consensus       394 ~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~~  423 (423)
                      .|+++-+.|. ++||+|+|||.|++++++.+
T Consensus       286 ~a~~ly~~La~~~DpiR~nyW~~~~s~ls~~  316 (318)
T KOG0530|consen  286 KAVKLYEDLAIKVDPIRKNYWRHKQSQLSTA  316 (318)
T ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHhhcccc
Confidence            5788888895 99999999999999888653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-39  Score=319.48  Aligned_cols=209  Identities=23%  Similarity=0.325  Sum_probs=180.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC---------Cc
Q 014516           76 QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR---------LL  146 (423)
Q Consensus        76 ~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~---------~~  146 (423)
                      ......|+.+.++|.++..             .++++.+++.+|..+|..||++||+||||+.++....         ..
T Consensus        22 ~~k~~~~~~~~s~i~~~r~-------------~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~   88 (421)
T KOG0529|consen   22 AFKAGQLRSLFSIIQKKRE-------------AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQ   88 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------------ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHH
Confidence            3456678888888877654             5689999999999999999999999999999987643         12


Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh-
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE-  225 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~-  225 (423)
                      ..+.+||.++..+|..|||+|.+||||+|+|++...+      .|..||.+|+++++.||||||||+|||||+.+...+ 
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~  162 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSR  162 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccc
Confidence            3688999999999999999999999999999987653      389999999999999999999999999999987542 


Q ss_pred             -hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          226 -QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       226 -~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                       ...+|+++|+++|..|+|||||||||..+|..+....       .+|. .-....+..|++++.++|.++|+|+|+|+|
T Consensus       163 ~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-------~~g~-~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  163 NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-------ADGN-FMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-------ccCc-cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence             4789999999999999999999999999999886531       1121 112467899999999999999999999999


Q ss_pred             HHHHHHH
Q 014516          305 RRFLSMY  311 (423)
Q Consensus       305 rr~Ll~~  311 (423)
                      +++|+.+
T Consensus       235 ~rWLl~~  241 (421)
T KOG0529|consen  235 HRWLLGR  241 (421)
T ss_pred             hHHhhcc
Confidence            9999876

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-39  Score=302.30  Aligned_cols=269  Identities=17%  Similarity=0.236  Sum_probs=199.8

Q ss_pred             CccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-----CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh
Q 014516          108 DDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-----LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR  182 (423)
Q Consensus       108 ~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-----~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~  182 (423)
                      ..+++.++|+.|..++..||++||+||||+.++.+..     ....+..||.|++.++.-|||+|++||||+|+|+....
T Consensus        44 kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~  123 (328)
T COG5536          44 KKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK  123 (328)
T ss_pred             hhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC
Confidence            4689999999999999999999999999999998821     13458899999999999999999999999999998755


Q ss_pred             ccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC----hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT----REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~----~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      +      -|..|+.++.++++.||||||+|+||+|++.+..    ......|++++...|..|+.|+||||||..++.++
T Consensus       124 ~------~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~  197 (328)
T COG5536         124 P------SWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR  197 (328)
T ss_pred             c------ccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence            3      2899999999999999999999999999995532    24588999999999999999999999998888877


Q ss_pred             hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH-HHHHHhhhhhhcccCCCCCCcchhhH
Q 014516          259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY-LIKHMATHLLAVSCQSKPKASVDIDI  337 (423)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~-l~~~~~~~~~~~s~~~~~~~~~~~~~  337 (423)
                      ...+     ..      -....+++||+++.++|..+|.|+|+|.|.|+++.. .....                +..+.
T Consensus       198 ~~~~-----~v------isqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~----------------~~~e~  250 (328)
T COG5536         198 FNRG-----DV------ISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV----------------MIGEK  250 (328)
T ss_pred             Hhhc-----cc------chHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH----------------HHHHH
Confidence            5431     00      011258999999999999999999999999999865 11111                11223


Q ss_pred             HHHHHHHHHHHH--hhhccCccchhhhHHH--HHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHhhhcCcCccchh
Q 014516          338 DSLMDHELCLVH--SCSTTIADANFEEAQA--IHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLW  413 (423)
Q Consensus       338 ~~~l~~El~lv~--~~~~~dp~D~~~~~q~--~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w  413 (423)
                      ...|..++.+++  ++-...|+| +.--.+  ..-.+++.|..+-  .+  .+.++    .  .+..++-++||.|+|+|
T Consensus       251 v~~L~k~~~iin~~el~l~~ken-~~~l~~~l~lE~l~~~~~~~~--te--~d~e~----~--alv~~~i~~DP~Rr~~y  319 (328)
T COG5536         251 VEDLGKYIVIINGKELDLGPKEN-LPCLHSLLELEFLCHAEKALL--TE--RDIEQ----K--ALVELAIKVDPARRNLY  319 (328)
T ss_pred             HHHHHhhheeccccccccCCccc-cHHHHHHHHHHHHHHHhhcCc--ch--hHHHH----H--HHHHHHHhcChHHHHHH
Confidence            455666666655  555555666 111011  1111222332221  12  11122    1  13445579999999999


Q ss_pred             hhhhccC
Q 014516          414 DYLVGYH  420 (423)
Q Consensus       414 ~~~~~~~  420 (423)
                      ..+.+.+
T Consensus       320 ~~l~~r~  326 (328)
T COG5536         320 STLHERF  326 (328)
T ss_pred             HHHHhhc
Confidence            9887643

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-36  Score=295.59  Aligned_cols=192  Identities=24%  Similarity=0.332  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc--c--ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516          150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRN--C--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (423)
Q Consensus       150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~--~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (423)
                      .+.+.++..+|.+||..|++|||||-++......  .  ...+.++.+||.+++.+++.+||.|.+|+||+|++++-+.+
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            5669999999999999999999999999876542  1  12455789999999999999999999999999999998888


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                      .|..||+.|+++++.|++||||||||+||+......                .....+|++|++++|..+|+|+|+||||
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~----------------~~~~~~El~ftt~~I~~nfSNYsaWhyR  189 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS----------------RNLEKEELEFTTKLINDNFSNYSAWHYR  189 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc----------------cccchhHHHHHHHHHhccchhhhHHHHH
Confidence            899999999999999999999999999999986321                1146789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516          306 RFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ  378 (423)
Q Consensus       306 r~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~  378 (423)
                      ..++..+...-. ++          ..+   ....|..|+++|++|+||||+|     ||  +|+|++||+++
T Consensus       190 s~lL~~l~~~~~-~g----------~~~---~~~~l~sEle~v~saiFTdp~D-----qS--~WfY~rWLl~~  241 (421)
T KOG0529|consen  190 SLLLSTLHPKEA-DG----------NFM---PKELLQSELEMVHSAIFTDPED-----QS--CWFYHRWLLGR  241 (421)
T ss_pred             HHHHHHhccccc-cC----------ccC---CHHHHHHHHHHHHHHHhcCccc-----cc--eeeehHHhhcc
Confidence            999876432211 00          001   2577999999999999999999     65  99999999988

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-33  Score=264.62  Aligned_cols=193  Identities=17%  Similarity=0.310  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (423)
                      -...+|++|+.++..||..|++||||+-++.+......+...++.+||.+|+.+++-+||||+.|+||+|++...+.+.|
T Consensus        47 ys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~  126 (328)
T COG5536          47 YSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSW  126 (328)
T ss_pred             cCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCccc
Confidence            35789999999999999999999999999998433323345679999999999999999999999999999999988889


Q ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516          228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF  307 (423)
Q Consensus       228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~  307 (423)
                      ..|+..++++++.|++||||||||++++..+...  .            -.+.+..|++|++++|++||.|.|||+||-.
T Consensus       127 ~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~--~------------N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~  192 (328)
T COG5536         127 GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL--F------------NFSDLKHELEYTTSLIETDIYNNSAWHHRYI  192 (328)
T ss_pred             chhHHHHHHHhcccccccceeeeEeeeeecchhh--c------------cchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence            9999999999999999999999999999774321  1            1236889999999999999999999999977


Q ss_pred             HHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516          308 LSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ  378 (423)
Q Consensus       308 Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~  378 (423)
                      ++..+.+.     ++.          .  .+.++.+||+++.++++|||+|     |+  +|.|++|+.+.
T Consensus       193 ~~~~~~~~-----~~v----------i--sqk~l~~eL~~i~~~if~~p~~-----~S--~w~y~r~~~~~  239 (328)
T COG5536         193 WIERRFNR-----GDV----------I--SQKYLEKELEYIFDKIFTDPDN-----QS--VWGYLRGVSSE  239 (328)
T ss_pred             HHHHHHhh-----ccc----------c--hHHHHHHHHHHHHhhhhcCccc-----cc--hhhHHHHHhcc
Confidence            77664431     111          1  2348999999999999999999     55  99999999976

>PLN02789 farnesyltranstransferase

Probab=99.97  E-value=6.8e-31  Score=261.46  Aligned_cols=203  Identities=20%  Similarity=0.330  Sum_probs=178.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516          121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (423)
Q Consensus       121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (423)
                      +.|...|++..||.+.+.++...+   ..+++|.+++.+|..||++|++|+||++++..++.       .+++||.++++
T Consensus        28 ~~i~y~~~~~~a~~~~ra~l~~~e---~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------~l~eeL~~~~~   97 (320)
T PLN02789         28 VPIAYTPEFREAMDYFRAVYASDE---RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------DLEEELDFAED   97 (320)
T ss_pred             cceeeCHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------hHHHHHHHHHH
Confidence            346778999999999999998875   67999999999999999999999999999998853       27899999999


Q ss_pred             HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHH
Q 014516          201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQI  280 (423)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (423)
                      +++.+||||++|+||+|++..++.....+|+++++++++.||+|+|||+||++++.++.                    .
T Consensus        98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~--------------------~  157 (320)
T PLN02789         98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG--------------------G  157 (320)
T ss_pred             HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh--------------------h
Confidence            99999999999999999999987645678999999999999999999999999999862                    3


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchh
Q 014516          281 WKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANF  360 (423)
Q Consensus       281 ~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~  360 (423)
                      +++|+++++++|+.+|+|.|+|+||.+++..+.. .    ++              ....+++|++++..++.++|++  
T Consensus       158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l----~~--------------~~~~~e~el~y~~~aI~~~P~N--  216 (320)
T PLN02789        158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-L----GG--------------LEAMRDSELKYTIDAILANPRN--  216 (320)
T ss_pred             HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-c----cc--------------ccccHHHHHHHHHHHHHhCCCC--
Confidence            8899999999999999999999999998764211 0    00              1235778999999999999999  


Q ss_pred             hhHHHHHHHHHHHHHhhhh
Q 014516          361 EEAQAIHSAAYMLWLTKQI  379 (423)
Q Consensus       361 ~~~q~~~~~~y~~Wl~~~~  379 (423)
                           .++|.|+.|+....
T Consensus       217 -----~SaW~Yl~~ll~~~  230 (320)
T PLN02789        217 -----ESPWRYLRGLFKDD  230 (320)
T ss_pred             -----cCHHHHHHHHHhcC
Confidence                 45999999999763

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-28  Score=231.04  Aligned_cols=176  Identities=17%  Similarity=0.297  Sum_probs=155.6

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (423)
                      .-.++|++|+.++..||-+||+|+|||-||.++..       .+.+||+.+..+++.+||||..|+||+|++..++.+..
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            45899999999999999999999999999999876       38999999999999999999999999999999885323


Q ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516          228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF  307 (423)
Q Consensus       228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~  307 (423)
                       +||+++..+|..|..|||||.||+|++..+.                    .++.||.|+..+|+.+-.|.|||+||-+
T Consensus       131 -rELef~~~~l~~DaKNYHaWshRqW~~r~F~--------------------~~~~EL~y~~~Lle~Di~NNSAWN~Ryf  189 (318)
T KOG0530|consen  131 -RELEFTKLMLDDDAKNYHAWSHRQWVLRFFK--------------------DYEDELAYADELLEEDIRNNSAWNQRYF  189 (318)
T ss_pred             -chHHHHHHHHhccccchhhhHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHhhhccchhheeeE
Confidence             9999999999999999999999999998751                    4899999999999999999999999998


Q ss_pred             HHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhh
Q 014516          308 LSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQ  378 (423)
Q Consensus       308 Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~  378 (423)
                      ++...       . ++          .  .+..|+.|+.+..+.+.+.|+.     +  ++|.|+.=+.+.
T Consensus       190 vi~~~-------~-~~----------~--~~~~le~El~yt~~~I~~vP~N-----e--SaWnYL~G~l~~  233 (318)
T KOG0530|consen  190 VITNT-------K-GV----------I--SKAELERELNYTKDKILLVPNN-----E--SAWNYLKGLLEL  233 (318)
T ss_pred             EEEec-------c-CC----------c--cHHHHHHHHHHHHHHHHhCCCC-----c--cHHHHHHHHHHh
Confidence            87431       1 11          1  2367899999999999999999     4  599999877765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.00  E-value=1.1e-07  Score=103.23  Aligned_cols=161  Identities=8%  Similarity=0.019  Sum_probs=116.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..+|.++|++..+|..+..++...+   .+++.+..+..++..+|+++.+|.+|..+...++.        
T Consensus       346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------  414 (615)
T TIGR00990       346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELG---DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--------  414 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            3567777777777778877777777777776664   67777777777777788877788777777666554        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+..+.++++.+|.|..+|...+.+...++.  +++.+..+.+.+..+|.+..+|.++..++....           
T Consensus       415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-----------  481 (615)
T TIGR00990       415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQN-----------  481 (615)
T ss_pred             HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-----------
Confidence            5677777777888888777777777777766654  677777777777777777777777776665531           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                               .+++.+++..+++..+|.+...|..
T Consensus       482 ---------~~~~A~~~~~~Al~l~p~~~~~~~~  506 (615)
T TIGR00990       482 ---------KFDEAIEKFDTAIELEKETKPMYMN  506 (615)
T ss_pred             ---------CHHHHHHHHHHHHhcCCcccccccc
Confidence                     2567777777778777776555543

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.89  E-value=1.6e-09  Score=70.54  Aligned_cols=30  Identities=40%  Similarity=0.738  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (423)
                      +||++|..++..+|+||+||+||+||++++
T Consensus         1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            588999999999999999999999998765

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.85  E-value=2e-07  Score=101.10  Aligned_cols=168  Identities=13%  Similarity=-0.030  Sum_probs=147.9

Q ss_pred             chHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516          111 LAIEVMIHSKALLLL---SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~---nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~  187 (423)
                      ..+++++.+..++..   +|+...+|+.++.+....+   .+++++..+..++..+|.+..+|..+.+++..++.     
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g---~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~-----  380 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG---KHLEALADLSKSIELDPRVTQSYIKRASMNLELGD-----  380 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-----
Confidence            456788889999876   4888999999999988775   78999999999999999999999999999887765     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                         +++.+..+.++++.+|.+..+|.+++.+....+.  +++.+..+++.+..+|.|..+|..+..++.++.        
T Consensus       381 ---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g--------  447 (615)
T TIGR00990       381 ---PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG--------  447 (615)
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC--------
Confidence               6889999999999999999999999999887765  889999999999999999999998888776642        


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY  311 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (423)
                                  .+++.+....+++..+|.+..+|.++..++..
T Consensus       448 ------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       448 ------------SIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                        26788999999999999999999998776643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.79  E-value=2.5e-07  Score=81.92  Aligned_cols=126  Identities=10%  Similarity=-0.108  Sum_probs=112.8

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516          117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE  196 (423)
Q Consensus       117 ~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~  196 (423)
                      .+.+.++.++|++   +..+...+...+   .+.+++..+..++..+|.++.+|..+.-++..++.        +++.+.
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~   79 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEG---DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------YTTAIN   79 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHH
Confidence            3568889999997   445777777765   78999999999999999999999999999998876        789999


Q ss_pred             HHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ++.++++.+|.+..+|.+++.++..++.  ..+.+..+.+.+..+|.|.-.|..|..+...+
T Consensus        80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         80 FYGHALMLDASHPEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999998876  78999999999999999999999998876653

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.76  E-value=1.1e-08  Score=66.61  Aligned_cols=30  Identities=37%  Similarity=0.796  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhCCCchhHhHHHHHHHHHh
Q 014516          151 DELHLSALVLSYSPKSEQAWSHRRWVINMI  180 (423)
Q Consensus       151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l  180 (423)
                      +||.++..+|..+||+|++|+||+|+++++
T Consensus         1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            599999999999999999999999999876

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.50  E-value=4.1e-06  Score=74.07  Aligned_cols=124  Identities=8%  Similarity=-0.113  Sum_probs=107.7

Q ss_pred             HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHH
Q 014516          154 HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK  233 (423)
Q Consensus       154 ~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~  233 (423)
                      .+++.++..+|.+   |.++.+++.+.+.        +.+.+..+..++..+|.++.+|..++-++...+.  +.+.+..
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~   80 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINF   80 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHH
Confidence            4568889999986   5577888776665        6889999999999999999999999999988765  8999999


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       234 ~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +.+.+..+|.|..+|.++..++..+.                    -+++.+.....+|..+|.|...|..+.....
T Consensus        81 y~~Al~l~p~~~~a~~~lg~~l~~~g--------------------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         81 YGHALMLDASHPEPVYQTGVCLKMMG--------------------EPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999888752                    2678899999999999999999988776543

>PRK12370 invasion protein regulator; Provisional

Probab=98.49  E-value=8.5e-06  Score=87.52  Aligned_cols=168  Identities=8%  Similarity=-0.036  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS  185 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~  185 (423)
                      .++++.++.+++.++|++..+|.....+.....      ....+.+++.....++..+|++..+|..+..++...+.   
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~---  353 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE---  353 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---
Confidence            468899999999999999999987776543221      12347899999999999999999999998887776554   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccccc
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYT  265 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~  265 (423)
                           +++.+..++++++.+|.+..+|.+.+.++...+.  +++.+..+++.+..+|.+..++.++..++... +     
T Consensus       354 -----~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-g-----  420 (553)
T PRK12370        354 -----YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYH-T-----  420 (553)
T ss_pred             -----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-c-----
Confidence                 6889999999999999999999999999988776  88999999999999999876655544433321 1     


Q ss_pred             CCCCCCCchhchHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHH
Q 014516          266 QDNNSSGYFVETYQIWKEELDWNESLIKQY-VGREALWLHRRFLS  309 (423)
Q Consensus       266 ~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~-p~neSaW~yrr~Ll  309 (423)
                                    -+++.+....+++..+ |++..++.+...++
T Consensus       421 --------------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        421 --------------GIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             --------------CHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence                          2577788888888776 66666666654443

>PRK12370 invasion protein regulator; Provisional

Probab=98.45  E-value=1.3e-05  Score=86.10  Aligned_cols=161  Identities=12%  Similarity=0.033  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++....+++.++|++..+|..+..++...+   ..++++..+..++..+|.++.+|.+...++...+.        +
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~  388 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS---EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------L  388 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            578999999999999999999999999887765   78999999999999999999999999999888765        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH-VADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d-~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      ++.+..++++++.+|.+..++.+..++.-..+.  +++.+..+.+.+..+ |.+-.++.+...++....           
T Consensus       389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G-----------  455 (553)
T PRK12370        389 EEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG-----------  455 (553)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC-----------
Confidence            889999999999999987776666666555443  688899999999886 556566777776665431           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                               -+++..+...++....|.+..++...
T Consensus       456 ---------~~~eA~~~~~~~~~~~~~~~~~~~~l  481 (553)
T PRK12370        456 ---------KHELARKLTKEISTQEITGLIAVNLL  481 (553)
T ss_pred             ---------CHHHHHHHHHHhhhccchhHHHHHHH
Confidence                     24566666777776667666666544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.40  E-value=1.1e-05  Score=79.79  Aligned_cols=166  Identities=10%  Similarity=-0.035  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ..+++..+..++.++|++..+|+.++.++...+   ++++++..++.++..+|++..+|..|..++...+.        +
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~  148 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--------Y  148 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            467888899999999999999999999988876   78999999999999999999999999988877665        6


Q ss_pred             HHHHHHHHHHHHhcCCCch--hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516          192 ERESELVEKIAERSKMNYR--AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN  269 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~  269 (423)
                      ++.+..+.++++.+|.+..  .|.+   +....  ....+.+....+.+...+.+..+|......+.++           
T Consensus       149 ~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~--~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~-----------  212 (296)
T PRK11189        149 ELAQDDLLAFYQDDPNDPYRALWLY---LAESK--LDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKI-----------  212 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH---HHHcc--CCHHHHHHHHHHHHhhCCccccHHHHHHHHccCC-----------
Confidence            8899999999999998863  2221   11111  2356777777666655444433342222111110           


Q ss_pred             CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                           .. ...+....+.....+..+|....+|+|+..+..
T Consensus       213 -----~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~  247 (296)
T PRK11189        213 -----SE-ETLMERLKAGATDNTELAERLCETYFYLAKYYL  247 (296)
T ss_pred             -----CH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence                 00 012222222233445566777789999877664

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.36  E-value=2.3e-05  Score=67.27  Aligned_cols=127  Identities=14%  Similarity=0.070  Sum_probs=111.2

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516          118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (423)
Q Consensus       118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (423)
                      .+..++..+|++..+-..+...+...+   .+++++.....++..+|.+..+|..+..++...+.        +...+..
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~   73 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQG---RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--------YEEAIDA   73 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            467889999999988877887777664   78999999999999999999999999999887765        6788889


Q ss_pred             HHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      +.++++.+|.+...|.+++++....+.  +...+....+.++.+|.+..++-++..+...
T Consensus        74 ~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        74 YALAAALDPDDPRPYFHAAECLLALGE--PESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            999999999999999999999887765  8899999999999999999988887766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.35  E-value=4.2e-05  Score=75.63  Aligned_cols=121  Identities=11%  Similarity=0.035  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHH---hCCCc-HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516          112 AIEVMIHSKALLL---LSCDF-ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       112 ~~~~L~~t~~lLl---~nPe~-~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~  187 (423)
                      .+..+.....+|.   ++|+. ..+|..|+.+....+   ...+++..+..++..+|+++.+|+.+..++...+.     
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-----  113 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-----  113 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence            4556666777775   44444 688999999988876   78899999999999999999999999999988776     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                         ++..+....++++.+|.+..+|..|+.++...+.  +++.++.+++.+..+|.|.
T Consensus       114 ---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        114 ---FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence               7889999999999999999999999999887765  8999999999999999986

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.18  E-value=0.00054  Score=62.37  Aligned_cols=162  Identities=10%  Similarity=-0.061  Sum_probs=128.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++....++..+|++..+|..+..+....+   +..+.+.....++..+|++..+|.....++...+.        
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~--------  114 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLG---ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK--------  114 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------
Confidence            3578899999999999999999999999888875   78999999999999999999999998888876654        


Q ss_pred             HHHHHHHHHHHHHhc--CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516          191 IERESELVEKIAERS--KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~--pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                      +.+.+..+.+++...  |....+|.....+....+.  +.+....+.+.+..+|.+.-+|..+..+.....         
T Consensus       115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------  183 (234)
T TIGR02521       115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLRG---------  183 (234)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC---------
Confidence            678888888888753  5556677777766655544  788899999999999998888776665555421         


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                                 -+++.+.+..+++...|.+...|...
T Consensus       184 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~  209 (234)
T TIGR02521       184 -----------QYKDARAYLERYQQTYNQTAESLWLG  209 (234)
T ss_pred             -----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                       25667777888887777776666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=5.5e-05  Score=80.20  Aligned_cols=163  Identities=16%  Similarity=0.121  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHh-------hcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHH
Q 014516           80 PVYKAAKHAFISALRQ-------YKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDE  152 (423)
Q Consensus        80 ~lY~~A~~~f~~~l~~-------y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~E  152 (423)
                      .-+..|...|.++++-       |-=++.+.   ...+..+.+..+++.+|.++|.||-||.-=+.+..+.+   .++.+
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~---~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe---k~e~A  508 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHES---IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE---KLEFA  508 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChh---hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc---hhhHH
Confidence            3577888888888762       10011111   12455688999999999999999999999998887764   68888


Q ss_pred             HHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHH
Q 014516          153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELK  232 (423)
Q Consensus       153 L~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~  232 (423)
                      .-.+.+++.+||.+-.+=.|=.-++.+++.        .++.|.+.++|+-.||+|-++=.||.-++..+++  +.++|.
T Consensus       509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~--------~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--~~eal~  578 (638)
T KOG1126|consen  509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR--------KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR--YVEALQ  578 (638)
T ss_pred             HHHHHhhhcCCccchhHHhhhhHHHHHhhh--------hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--hHHHHH
Confidence            999999999999999999999988888876        4789999999999999999999999999988766  788888


Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          233 KSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       233 ~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ..+++=..-|.+-+..+-...+..++
T Consensus       579 ~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  579 ELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            88888888899988877777666665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.15  E-value=0.00076  Score=74.13  Aligned_cols=131  Identities=15%  Similarity=-0.077  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++...|++..+|+....+....+   .+++++..+..++..+|++..+|.....+....+.        
T Consensus       446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------  514 (899)
T TIGR02917       446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN--------  514 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------
Confidence            3566777777777777777777777777776664   56777777777777777777777766665554433        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +.+.+..+.++++.+|.+..+|.....+....+.  ..+.+..+.+.+..+|.+...+.....+
T Consensus       515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~  576 (899)
T TIGR02917       515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPALALAQY  576 (899)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            4556666666666666666666666555544433  4555666666666666666555444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.07  E-value=0.00019  Score=78.82  Aligned_cols=156  Identities=9%  Similarity=-0.080  Sum_probs=122.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH----HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM----DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST  186 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~----~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~  186 (423)
                      ..++++.....++..+|++..+++....++...+   .+.    +++..+..++..+|.+..+|....+++...+.    
T Consensus       227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G---~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~----  299 (656)
T PRK15174        227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSG---RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ----  299 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----
Confidence            4577889999999999999999999998888775   334    37999999999999999999999998887765    


Q ss_pred             hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccC
Q 014516          187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ  266 (423)
Q Consensus       187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~  266 (423)
                          +++.+..+.++++.+|.+-.++.+..-++...+.  +++.++.+.+.+..+|.+..++.++..++....       
T Consensus       300 ----~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G-------  366 (656)
T PRK15174        300 ----NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAALLQAG-------  366 (656)
T ss_pred             ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC-------
Confidence                6888899999999999999999998888877765  788899999999999987654444455444321       


Q ss_pred             CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516          267 DNNSSGYFVETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                                   -.++.+....+++..+|.+.
T Consensus       367 -------------~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        367 -------------KTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             -------------CHHHHHHHHHHHHHhChhhc
Confidence                         14555666666666666653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.07  E-value=0.00014  Score=67.86  Aligned_cols=126  Identities=6%  Similarity=-0.034  Sum_probs=109.7

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHH-HHhhhccChhH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI-NMISRNCSTLQ  188 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll-~~l~~~~~~~~  188 (423)
                      ...++++.....+|..||++..+|...+++....+   ++++++..+..++..+|++..+|....-++ ...+..     
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-----  124 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-----  124 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence            44588899999999999999999999999998876   899999999999999999999999988765 343331     


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS  246 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S  246 (423)
                       ...+...++.++++.+|+|-.+++.........+.  +++.+...+++++.+|.+-+
T Consensus       125 -~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        125 -MTPQTREMIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             -CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcc
Confidence             13788899999999999999999999999877765  89999999999999888663

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.07  E-value=0.00034  Score=76.84  Aligned_cols=165  Identities=8%  Similarity=-0.103  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ++++..+..++..+|++..+|.....++...+   .+.+.+.++..++..+|.+..+|..+..+....+.        +.
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~  210 (899)
T TIGR02917       142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN---RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN--------IE  210 (899)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC--------HH
Confidence            44445555555555555555544444444432   44555555555555555555555554444433322        34


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcCh--------------------------------hhHHHHHHHHHHHHhc
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------------------------EQVLDELKKSRNWSGL  240 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------------------------~~~~~EL~~~~k~i~~  240 (423)
                      ..+....++++.+|.+..+|..+..++...+.                                ..+.+.+..+.+.+..
T Consensus       211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  290 (899)
T TIGR02917       211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS  290 (899)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            44444445555555555544444444433322                                1244444444444444


Q ss_pred             cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          241 HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       241 d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      +|.+..++.....+....                    .-+++.+.+..+++..+|.+..++..+..+
T Consensus       291 ~~~~~~~~~~~~~~~~~~--------------------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  338 (899)
T TIGR02917       291 APEYLPALLLAGASEYQL--------------------GNLEQAYQYLNQILKYAPNSHQARRLLASI  338 (899)
T ss_pred             CCCchhHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            444444443333332221                    125566777777888888877666554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.05  E-value=0.00023  Score=81.14  Aligned_cols=157  Identities=6%  Similarity=-0.151  Sum_probs=130.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.++..++..+|++..+...-...+...+   ++.+++..+..++..+|. ..+|.....++.+++.        
T Consensus       557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G---r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~--------  624 (987)
T PRK09782        557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG---QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN--------  624 (987)
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence            4477888899999999988766553222222223   789999999999999996 8999999988888776        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      .++.+..+.++++.+|.|..++....+++...+.  .++.++.+.+.+..+|.|..+|..+..++..+.           
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~--~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG-----------  691 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGD--IAQSREMLERAHKGLPDDPALIRQLAYVNQRLD-----------  691 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------
Confidence            6889999999999999999999999999988765  788999999999999999999999999887752           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREAL  301 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa  301 (423)
                               -+++.+.+..++|..+|++..+
T Consensus       692 ---------d~~eA~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        692 ---------DMAATQHYARLVIDDIDNQALI  713 (987)
T ss_pred             ---------CHHHHHHHHHHHHhcCCCCchh
Confidence                     2567788888888888877544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.87  E-value=0.00016  Score=76.70  Aligned_cols=131  Identities=15%  Similarity=0.057  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHH
Q 014516          149 LMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVL  228 (423)
Q Consensus       149 ~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~  228 (423)
                      ++.++..+..+|..+|.+|-+|+--+-+..+..+        ++.+.-...+|++.+|+|--.=+|-+-+..+++.  .+
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d  540 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KD  540 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hh
Confidence            4445555555555555555555554444443332        3444445555555555555555555555555443  56


Q ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          229 DELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       229 ~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      +.|.+++++|.+||.|-.+=.+|..++..+..                    +.++|.-.+.+-..-|.+-++.+-...+
T Consensus       541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--------------------~~eal~~LEeLk~~vP~es~v~~llgki  600 (638)
T KOG1126|consen  541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGR--------------------YVEALQELEELKELVPQESSVFALLGKI  600 (638)
T ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--------------------hHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            77888888888888888888888877776532                    3455555555555568877776655444


Q ss_pred             H
Q 014516          309 S  309 (423)
Q Consensus       309 l  309 (423)
                      .
T Consensus       601 ~  601 (638)
T KOG1126|consen  601 Y  601 (638)
T ss_pred             H
Confidence            4

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0019  Score=66.80  Aligned_cols=187  Identities=10%  Similarity=0.073  Sum_probs=113.6

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516          117 IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE  196 (423)
Q Consensus       117 ~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~  196 (423)
                      ....++|.++|.+.....+|..+.....   .-++-...++.+...||.++.+++||..+..-+..        ++..+.
T Consensus       347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------~e~A~a  415 (606)
T KOG0547|consen  347 EDFDAAIKLDPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------YEEAIA  415 (606)
T ss_pred             hhHHHHHhcCcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------HHHHHH
Confidence            3455566666666666555555544432   33445566666666666666666666655544433        455666


Q ss_pred             HHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516          197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE  276 (423)
Q Consensus       197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~  276 (423)
                      -..++..++|.|-.+.-..+.++=+...  +.+-+..++..++.=|+--.+.++-..+|.-                   
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-------------------  474 (606)
T KOG0547|consen  416 DFQKAISLDPENAYAYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTD-------------------  474 (606)
T ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-------------------
Confidence            6666666666666665555555433332  4455555556666666666666655554432                   


Q ss_pred             hHHHHHHHHHHHHHHHhhcCC------CccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHh
Q 014516          277 TYQIWKEELDWNESLIKQYVG------REALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHS  350 (423)
Q Consensus       277 ~~~~~~eEL~~~~~~I~~~p~------neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~  350 (423)
                       .+-+...++..+.+|++.|.      |-..-.+...++..|-                         +=+.+=++|+..
T Consensus       475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-------------------------~d~~~a~~Ll~K  528 (606)
T KOG0547|consen  475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-------------------------EDINQAENLLRK  528 (606)
T ss_pred             -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-------------------------hhHHHHHHHHHH
Confidence             23478888999999999999      7777777665554322                         113445678889


Q ss_pred             hhccCccchhh
Q 014516          351 CSTTIADANFE  361 (423)
Q Consensus       351 ~~~~dp~D~~~  361 (423)
                      |++.||..++-
T Consensus       529 A~e~Dpkce~A  539 (606)
T KOG0547|consen  529 AIELDPKCEQA  539 (606)
T ss_pred             HHccCchHHHH
Confidence            99999997543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.84  E-value=0.0014  Score=71.88  Aligned_cols=131  Identities=7%  Similarity=-0.155  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (423)
                      ...+++..+..++..+|.+..++.....++...+...    +.....+..+.++++.+|.+..+|....+++...+.  +
T Consensus       227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~  300 (656)
T PRK15174        227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ--N  300 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--H
Confidence            5677778888888888888888877777666655421    111246889999999999999999999988887765  7


Q ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                      ++.+..+++.+..+|.|..++.++..++.+..                    -+++.++....++..+|.+..++.+
T Consensus       301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G--------------------~~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVG--------------------QYTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHhCccchHHHHH
Confidence            88899999999999999999888877666531                    2577788888999999987643333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.83  E-value=0.00097  Score=76.17  Aligned_cols=125  Identities=9%  Similarity=-0.007  Sum_probs=113.6

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ...++++..+..++.++|+ ..+|.....++...+   ..++++..+..++..+|++..+++...+++...+.       
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-------  658 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-------  658 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------
Confidence            4568899999999999997 899999999998886   78999999999999999999999999999998765       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF  248 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW  248 (423)
                       .++.+.++.++++.+|.+..+|.++.+++..++.  .++.+..+++.+..+|.+...=
T Consensus       659 -~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~  714 (987)
T PRK09782        659 -IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALIT  714 (987)
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhh
Confidence             6889999999999999999999999999998876  7889999999999999776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.80  E-value=0.001  Score=56.97  Aligned_cols=126  Identities=10%  Similarity=-0.012  Sum_probs=102.6

Q ss_pred             HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      .+..++..+|++..+=.-+...+...+.        +.+.+....+++..+|.+-.+|...+.+...++.  +.+.+..+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~   74 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAY   74 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            4678899999998775555555554443        6788899999999999999999999999877654  78889999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      .+.+..+|.+...|.++..+.....                    -+++.+.+...++..+|++...+-+.+.+..
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLALG--------------------EPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            9999999999999999998776641                    2677888899999999999998888776643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.79  E-value=0.00045  Score=70.31  Aligned_cols=101  Identities=9%  Similarity=-0.071  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.++..+|.++|++..+|..|..++...+   .+.+++..+..++..+|++..+|..+..++..++.        
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--------   85 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--------   85 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--------
Confidence            4578999999999999999999999999998886   89999999999999999999999999998888776        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (423)
                      +...+..+.++++.+|.|-.+......+...+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            78999999999999999987765555554433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.79  E-value=0.002  Score=75.21  Aligned_cols=193  Identities=8%  Similarity=-0.018  Sum_probs=133.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH--hHH-----HHHHHHHhhhc
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA--WSH-----RRWVINMISRN  183 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~--W~h-----Rrwll~~l~~~  183 (423)
                      ..++++..+..+|.++|++..++.....++...+   .+++++..+..++..+|++...  |..     +-|+.......
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            3578999999999999999999999999988875   7899999999999999998643  421     22222211110


Q ss_pred             cChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC  263 (423)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~  263 (423)
                      .. ...-+.+.+..+.++++.+|.+..++.....+....+.  +++.++.+++.+..+|.|..++.....+.........
T Consensus       361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence            00 01126889999999999999999999999888877665  8899999999999999999998877665432100000


Q ss_pred             ------ccCC-C-C-------C--C-----CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          264 ------YTQD-N-N-------S--S-----GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       264 ------~~~~-~-~-------~--~-----~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                            .... . .       .  .     +.......-+++.++...+++..+|++..+++.+..++
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~  505 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL  505 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  0000 0 0       0  0     00000112456778888888888898766665544433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.73  E-value=0.001  Score=62.08  Aligned_cols=126  Identities=5%  Similarity=-0.031  Sum_probs=107.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHH-HhcChh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV-SFMTRE  225 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll-~~~~~~  225 (423)
                      ...++.+..+...|..+|++.+.|.....++...+.        +.+.+..+.++++.+|+|-.+|....-++ ...+..
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------YDNALLAYRQALQLRGENAELYAALATVLYYQAGQH  124 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence            456888999999999999999999999988887766        68999999999999999999999988765 444432


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                      ...+..+.+++.++.||.|..++...........                    -+++.+.+..+++..+|.+.+
T Consensus       125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g--------------------~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        125 MTPQTREMIDKALALDANEVTALMLLASDAFMQA--------------------DYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhhCCCCcc
Confidence            3578899999999999999999999998877641                    378889999999999888664

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.73  E-value=0.0011  Score=70.16  Aligned_cols=167  Identities=10%  Similarity=-0.041  Sum_probs=144.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ...++.+++.++|.++|.|..+-|.-+.+-...+   .++++..|..+.|..+|.+..+-+.-.-++++-++        
T Consensus       335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~---~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn--------  403 (966)
T KOG4626|consen  335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG---KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN--------  403 (966)
T ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--------
Confidence            4588999999999999999999998888777664   67999999999999999999999999999988766        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +.+.+.+...++...|..-.|.+.++-.+..+++  ....++..++.|..+|.--.|.+....+..-.            
T Consensus       404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~--v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs------------  469 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD--VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS------------  469 (966)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc------------
Confidence            7899999999999999999999999999988876  78899999999999999989988877654321            


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                       |       ...+.++-..+++.+.|+-..+.+++-..++
T Consensus       470 -G-------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  470 -G-------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             -C-------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence             1       2467788889999999999999998755443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.69  E-value=0.002  Score=68.34  Aligned_cols=186  Identities=11%  Similarity=-0.004  Sum_probs=147.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      .-+++|..+..++.+.|++..||.....++...+   +.+.+..++..+|+.||..|.+=.+-.-+++..+.        
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~---~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr--------  199 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR--------  199 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc--------
Confidence            3588999999999999999999999999998876   67889999999999999999999999988887766        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc----c---
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF----C---  263 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~----~---  263 (423)
                      +.+.-.+..++++.+|-.-=||+.-+-++..-+.  ....+...++.+.+||.--.|+-..+-|+..+....    +   
T Consensus       200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             cchhHHHHHHHHhhCCceeeeehhcchHHhhcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            6778889999999999999999998887765544  667899999999999999999999999887653210    0   


Q ss_pred             -ccCCCCC---CCch---hchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          264 -YTQDNNS---SGYF---VETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       264 -~~~~~~~---~~~~---~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                       ...++..   -|.-   ---...++-.++..+++|+..|+-.-+.++....+
T Consensus       278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL  330 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL  330 (966)
T ss_pred             HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence             0111110   0100   00013566678888899999999998888865544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.62  E-value=0.0078  Score=60.80  Aligned_cols=158  Identities=10%  Similarity=-0.111  Sum_probs=114.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH--h-HHHH--HHHHHhhhccC
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA--W-SHRR--WVINMISRNCS  185 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~--W-~hRr--wll~~l~~~~~  185 (423)
                      ..++++..+..++..+|.+..+++....+....+   .+++++.....++..+|.+...  . .+..  .++...+    
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----  194 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK---DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG----  194 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC----
Confidence            3577888999999999999999999888887765   7899999999999988876431  1 1111  1111111    


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH-HHHHHHHHHHhhhcccc
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC-FHYRRRLMLRNLEGFCY  264 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa-W~yR~~Ll~~l~~~~~~  264 (423)
                          .+.+.+..+.++++.+|.+..+|....-+....+.  +++.++.+.+++..+|.+... +.....++...      
T Consensus       195 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~------  262 (389)
T PRK11788        195 ----DLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQAL------  262 (389)
T ss_pred             ----CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc------
Confidence                26888899999999999999888887777766554  788899999999998876533 33333332221      


Q ss_pred             cCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516          265 TQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL  301 (423)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa  301 (423)
                                    .-+++.+.+..+++..+|++..+
T Consensus       263 --------------g~~~~A~~~l~~~~~~~p~~~~~  285 (389)
T PRK11788        263 --------------GDEAEGLEFLRRALEEYPGADLL  285 (389)
T ss_pred             --------------CCHHHHHHHHHHHHHhCCCchHH
Confidence                          12567788888889889977543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0017  Score=67.76  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVL  160 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL  160 (423)
                      .|..|...|.+++..+|+....+    .....++++........++|+-.+--..++......+   ++..++.-++.++
T Consensus       313 ~~~~ai~~~~kaLte~Rt~~~ls----~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g---dy~~Av~~YteAI  385 (539)
T KOG0548|consen  313 DYEGAIKYYQKALTEHRTPDLLS----KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG---DYPEAVKHYTEAI  385 (539)
T ss_pred             hHHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHH
Confidence            57777788888777776522111    1234578888999999999999887777777666654   8999999999999


Q ss_pred             HhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516          161 SYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL  240 (423)
Q Consensus       161 ~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~  240 (423)
                      .++|++..++..|.-++.+|+.        +...|.-|.++++.||.+.-+|...+-++..|..  |.+.++.+.+.++.
T Consensus       386 kr~P~Da~lYsNRAac~~kL~~--------~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--ydkAleay~eale~  455 (539)
T KOG0548|consen  386 KRDPEDARLYSNRAACYLKLGE--------YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--YDKALEAYQEALEL  455 (539)
T ss_pred             hcCCchhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence            9999999999999999999987        6788899999999999999999999999888754  89999999999999


Q ss_pred             cCCChhHHH
Q 014516          241 HVADNSCFH  249 (423)
Q Consensus       241 d~~N~SaW~  249 (423)
                      ||+|--+-.
T Consensus       456 dp~~~e~~~  464 (539)
T KOG0548|consen  456 DPSNAEAID  464 (539)
T ss_pred             CchhHHHHH
Confidence            998865443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.55  E-value=0.0051  Score=71.88  Aligned_cols=194  Identities=9%  Similarity=-0.100  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHH--HH------------HHHHHHHc
Q 014516           81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATA--WN------------SRKLIVSN  142 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~Ta--Wn------------~Rk~lL~~  142 (423)
                      -|..|...|.++++........    ...-......++++..++.++..+|++..+  |.            .+..+...
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4777788887777643211000    000001234678999999999999987532  31            11223333


Q ss_pred             cCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516          143 KRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (423)
Q Consensus       143 ~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (423)
                      .   ..+.+++..+..++..+|++..++.....++...+.        +++.+..+.++++.+|.|-.+|.....+....
T Consensus       364 ~---g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--------~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        364 A---NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--------YAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             C---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            3   378999999999999999999999988888877665        68899999999999999988886544443210


Q ss_pred             ----------------------------------------ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516          223 ----------------------------------------TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF  262 (423)
Q Consensus       223 ----------------------------------------~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~  262 (423)
                                                              ....+.+.++.+++.+..+|.|..++..+..++.+..   
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G---  509 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG---  509 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Confidence                                                    0123567788999999999998877766666655431   


Q ss_pred             cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                                       .+++.+....+++..+|.+..+++-+
T Consensus       510 -----------------~~~~A~~~l~~al~~~P~~~~~~~a~  535 (1157)
T PRK11447        510 -----------------QRSQADALMRRLAQQKPNDPEQVYAY  535 (1157)
T ss_pred             -----------------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence                             26777888888999999998887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.0017  Score=67.26  Aligned_cols=201  Identities=10%  Similarity=-0.009  Sum_probs=153.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCC----CCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH
Q 014516           75 TQILIPVYKAAKHAFISALRQYKTPGNFSGK----SQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM  150 (423)
Q Consensus        75 ~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~----~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~  150 (423)
                      ++.|..-+..|..-|.++|+...+..+.--+    -.+.+-+.+..+....+..+||++..+.++|+++..-++   .++
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~---q~e  411 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ---QYE  411 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH---HHH
Confidence            4445555667777777777643221110000    002344677888999999999999999999999887764   789


Q ss_pred             HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516          151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE  230 (423)
Q Consensus       151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E  230 (423)
                      +++.=+++..+.+|.+.-.......++-+...        +.+-+...+.+.++.|++--+.++-.-++.--  .++...
T Consensus       412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq--qqFd~A  481 (606)
T KOG0547|consen  412 EAIADFQKAISLDPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ--QQFDKA  481 (606)
T ss_pred             HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH--HhHHHH
Confidence            99999999999999998887777776665543        67788899999999999999999877766432  358899


Q ss_pred             HHHHHHHHhccCC------ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          231 LKKSRNWSGLHVA------DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       231 L~~~~k~i~~d~~------N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                      ++..++.|.+.|+      |.-..-+...++.+..                   .-+...++.+.++|+.||.-+-+---
T Consensus       482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-------------------~d~~~a~~Ll~KA~e~Dpkce~A~~t  542 (606)
T KOG0547|consen  482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-------------------EDINQAENLLRKAIELDPKCEQAYET  542 (606)
T ss_pred             HHHHHHHHhhccccccccccchhhhhhhHhhhchh-------------------hhHHHHHHHHHHHHccCchHHHHHHH
Confidence            9999999999999      8888888887777642                   23677889999999999998877655


Q ss_pred             HHH
Q 014516          305 RRF  307 (423)
Q Consensus       305 rr~  307 (423)
                      ...
T Consensus       543 laq  545 (606)
T KOG0547|consen  543 LAQ  545 (606)
T ss_pred             HHH
Confidence            443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.44  E-value=0.0032  Score=64.11  Aligned_cols=103  Identities=8%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      ..+.+++.++..+|..+|.++.+|.+|..++..++.        +.+.+..+.++++.+|.+..+|..++.++..++.  
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--   85 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------FTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--   85 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--
Confidence            478999999999999999999999999999988876        7899999999999999999999999998888765  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL  259 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~  259 (423)
                      +.+.+..+++.+.++|.|..+......+..++.
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            889999999999999999998888887766663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.42  E-value=0.023  Score=51.53  Aligned_cols=162  Identities=7%  Similarity=-0.045  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCC----CCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNFSG----KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~~~----~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.+++.........-.    --......+++++....++..+|.+..+++....++...+   .+++++..+
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~  122 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG---KYEQAMQQF  122 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Confidence            466777777776653211000000    0001234578899999999999999999999999888775   789999999


Q ss_pred             HHHHHhC--CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          157 ALVLSYS--PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       157 ~~lL~~n--PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      ..++...  |....+|.....+....+.        +......+.++++.+|.+..+|.....+....+.  +++.+..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~  192 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGD--------FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYL  192 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHH
Confidence            9999853  5566677776666655544        6788899999999999998888888777766654  78888899


Q ss_pred             HHHHhccCCChhHHHHHHHHH
Q 014516          235 RNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      .+.+...+.+...|.....+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       193 ERYQQTYNQTAESLWLGIRIA  213 (234)
T ss_pred             HHHHHhCCCCHHHHHHHHHHH
Confidence            999988777767766544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.0012  Score=64.52  Aligned_cols=104  Identities=8%  Similarity=0.003  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      .++++++...+.+|..+|+++..+..|.-++.+|+.        +...++-|++++..||+...||.--+...-.+++  
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk--  164 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK--  164 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence            479999999999999999999999999999999986        6889999999999999999999988888777766  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE  260 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~  260 (423)
                      +++.++.+.|.+++||.|-+.|......-.++.+
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            7888999999999999999999999988777644

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.39  E-value=0.02  Score=57.83  Aligned_cols=120  Identities=8%  Similarity=-0.029  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHHHhhhccChh
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----QAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~~l~~~~~~~  187 (423)
                      .++++..+..++..+|++..+|.....++...+   .+.+.+.....++...+...    .+|..-..++...+.     
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~-----  122 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG---EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL-----  122 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC---cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence            456888888888888888888888877776654   56777777777666432221    223222322222221     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                         +...+.+..++++.+|.+..++.....+....+.  +++.++...+++..+|.+
T Consensus       123 ---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~  174 (389)
T PRK11788        123 ---LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD--WQKAIDVAERLEKLGGDS  174 (389)
T ss_pred             ---HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhcCCc
Confidence               4556666666666666666666555555444332  555666666666665554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.37  E-value=0.0029  Score=69.70  Aligned_cols=125  Identities=8%  Similarity=-0.120  Sum_probs=109.1

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      -..++++.+...++.+.|+|..|+..+..+|...+   .+++++.....+|...|+++++-+++.-++.+++.       
T Consensus       100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-------  169 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-------  169 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-------
Confidence            35689999999999999999999999999999885   79999999999999999999999999999999987       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC  247 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa  247 (423)
                       +++.+++.++++..+|.+-.+|.-+.-++..++.  .++....+.+.+..-..-.-.
T Consensus       170 -~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        170 -SEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             -hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhCcchHH
Confidence             6899999999999999999999999999988875  556666666666554433333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.35  E-value=0.061  Score=50.58  Aligned_cols=144  Identities=10%  Similarity=-0.052  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh---HhHHHHHHHHHhhhccC
Q 014516          112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ---AWSHRRWVINMISRNCS  185 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~---~W~hRrwll~~l~~~~~  185 (423)
                      .++++.....++..+|++.   .+|.....++...+   .+++++..+..++..+|+++.   +|..+..+.........
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG---DYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            4678999999999999876   57888888888875   799999999999999999887   58777777765421100


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchhchHH---HHHHHhc------------ChhhHHHHHHHHHHHHhccCCC---hhH
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRAWNHR---CWLVSFM------------TREQVLDELKKSRNWSGLHVAD---NSC  247 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR---~wll~~~------------~~~~~~~EL~~~~k~i~~d~~N---~Sa  247 (423)
                      .........+..+.+++..+|.+-.+|.-.   .++....            ....+.+.+....+.+...|.+   ..+
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a  205 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA  205 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence            001236788999999999999997776222   2221111            1124778899999999987754   367


Q ss_pred             HHHHHHHHHHh
Q 014516          248 FHYRRRLMLRN  258 (423)
Q Consensus       248 W~yR~~Ll~~l  258 (423)
                      |..+..+..++
T Consensus       206 ~~~l~~~~~~l  216 (235)
T TIGR03302       206 LARLVEAYLKL  216 (235)
T ss_pred             HHHHHHHHHHc
Confidence            77777666654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.35  E-value=0.025  Score=62.50  Aligned_cols=134  Identities=8%  Similarity=-0.131  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ..++|.-......--|.+..+-..=.++..+.+   .+++.+.+...++...|++..++.++.-+|.+...        +
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------~  136 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------I  136 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------H
Confidence            455555555556667777777777778888876   78999999999999999999999999999999876        7


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ++.+..+++++..+|.|..+=+++.-++..++.  +++.++.+++.+..||.+-.+|--+..++..+
T Consensus       137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999887  89999999999999999999999999999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.26  E-value=0.027  Score=56.39  Aligned_cols=134  Identities=14%  Similarity=0.045  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      .++|..+-+++..||++|.|..-|.-+..+++   .-.-.|.=++.+|...|+++.+=..|.-++.+.+.        ++
T Consensus        55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--------le  123 (504)
T KOG0624|consen   55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--------LE  123 (504)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhhccc--------HH
Confidence            56888899999999999999999999988887   44677888899999999999999999999988776        55


Q ss_pred             HHHHHHHHHHHhcCCCchh-------------chHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          193 RESELVEKIAERSKMNYRA-------------WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~A-------------W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ....-....++.+|.|-..             |.-|..+.+..+..+....+++++..++.-|=|-|-..+|.-.+-.
T Consensus       124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence            5666667777777755432             3444444444433456677788888888877777777777665443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.24  E-value=0.012  Score=64.89  Aligned_cols=118  Identities=11%  Similarity=0.050  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++......++..+|.++.+|.+=+.+-+..|   +.++.+.+--.+...||+++..|.+=.-+..+++.        +
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG---d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--------i  223 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG---DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--------I  223 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--------H
Confidence            488999999999999999999999999999987   88999999999999999999999987777776654        7


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      ..+.-+..++++.+|.|+.--.-|.-+.++++.  ...++.-..+++..+|
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHHHHHhhCC
Confidence            899999999999999997655557777777765  5666777777777766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.23  E-value=0.0087  Score=58.20  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          112 AIEVMIHSKALLLLS--CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       112 ~~~~L~~t~~lLl~n--Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      .+++.+..+.+....  |.+..+|..+..+....|   ...+++.++..+|..+|++..++..-.|++...+.       
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-------  195 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-------  195 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-------
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------
Confidence            455556666655544  678999999999999886   78999999999999999999999998888765544       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                       ..+...++....+..|.|-..|..-.++...++.  .++.+.++.+.+..+|.|.....+...++...
T Consensus       196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLEKALKLNPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred             -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--cccccccccccccccccccccccccccccccc
Confidence             3444567777777778999999999999988876  78999999999999999999988888877764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.18  E-value=0.003  Score=47.73  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh-hccChhHHhHHHHHHHHHHHHHhcC
Q 014516          128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS-RNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~-~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      ++..+|+.++.++...+   ++++++..++.++..+|+++.+|..|.-+...++ .        +.+.+..++++++.+|
T Consensus         1 e~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~--------~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQG---DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD--------YEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHcCc
Confidence            35678999999888875   7999999999999999999999999999988876 4        6888999999999988

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0028  Score=62.02  Aligned_cols=104  Identities=14%  Similarity=0.012  Sum_probs=93.0

Q ss_pred             ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      .....+++..++.+|.++|.+....-.|.....+++   .+..+++-+..+|.++|.+..+|.--..+...+++      
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk------  164 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK------  164 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc------
Confidence            455799999999999999999999999999999987   68999999999999999999999888877776665      


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (423)
                        +...++...++|++||.|-..|++-.|.-..+.
T Consensus       165 --~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  165 --YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             --HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence              678888899999999999999999888876664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.10  E-value=0.034  Score=62.30  Aligned_cols=165  Identities=8%  Similarity=-0.068  Sum_probs=123.3

Q ss_pred             chHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhH---------------
Q 014516          111 LAIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS---------------  171 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~---------------  171 (423)
                      ..++++..+..++..+|.+.    .+.......+...   ..+++++..+..++..+|+...++.               
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            35778888888888887763    2222222233333   3688889999999988887654442               


Q ss_pred             HHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516          172 HRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYR  251 (423)
Q Consensus       172 hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR  251 (423)
                      .+..++...+        .+.+.+.++.+++..+|.|..+|..+.-+....+.  ..+.++.+++.+..+|.|...+..+
T Consensus       364 ~~a~~l~~~g--------~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        364 LLSQVAKYSN--------DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             HHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHHHH
Confidence            1222222221        26888999999999999999999999999877765  7889999999999999999999888


Q ss_pred             HHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          252 RRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       252 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ..+..+..                    -+++....+.+++..+|+|..+=.+.|-.
T Consensus       434 a~~al~~~--------------------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        434 AWTALDLQ--------------------EWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHhC--------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88665531                    27788889999999999999888777654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.06  E-value=0.018  Score=55.94  Aligned_cols=133  Identities=14%  Similarity=0.049  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHh--CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516          148 ILMDELHLSALVLSY--SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~--nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (423)
                      ..++...++..+...  .|.++.+|.++..+..+.+.        ..+.+.++.++++.+|.|-.++..-.|++-..+. 
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-  195 (280)
T PF13429_consen  125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGD-  195 (280)
T ss_dssp             -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-
Confidence            567777777776553  37899999999999988776        6889999999999999999999999999866554 


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                       ..+..+.+..+....|+|...|.....+...+.                    ..++.+.+..+++..+|.|.....+.
T Consensus       196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg--------------------~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLG--------------------RYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---------------------HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc--------------------cccccccccccccccccccccccccc
Confidence             455567777777777899999998888887752                    26789999999999999999888876


Q ss_pred             HHHHH
Q 014516          306 RFLSM  310 (423)
Q Consensus       306 r~Ll~  310 (423)
                      ..++.
T Consensus       255 a~~l~  259 (280)
T PF13429_consen  255 ADALE  259 (280)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            66553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.01  E-value=0.024  Score=63.51  Aligned_cols=130  Identities=10%  Similarity=-0.005  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++++....++..+|....++.....++...+   .+.+++.++..+|..+|.+..+|.-..-++...+.        .
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--------~   99 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK---QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--------Y   99 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            355556666666666666666666666665554   55666666666666666666666543333333222        4


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      .+.+..+.++++.+|.+.. |.-...++...+.  ..+.+..+++++..+|.|..++.....++
T Consensus       100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5666666666666666666 6555555555443  55666666666666666666665554444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.99  E-value=0.11  Score=48.90  Aligned_cols=169  Identities=7%  Similarity=-0.064  Sum_probs=112.2

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (423)
                      +....++..+...+...+   .+.+++..+..++..+|.++   .+|.+..-++...+.        +...+..+.++++
T Consensus        30 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l~   98 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSG---DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFIR   98 (235)
T ss_pred             cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence            344556666666665554   68999999999999999987   466777666666544        7899999999999


Q ss_pred             hcCCCch---hchHHHHHHHhcC------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCch
Q 014516          204 RSKMNYR---AWNHRCWLVSFMT------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYF  274 (423)
Q Consensus       204 ~~pkNY~---AW~hR~wll~~~~------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~  274 (423)
                      .+|++..   +|..++.+.....      .......+..+.+.+..+|.+-.+|.-...+... .....  ......+..
T Consensus        99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-~~~~~--~~~~~~a~~  175 (235)
T TIGR03302        99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-RNRLA--GKELYVARF  175 (235)
T ss_pred             HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-HHHHH--HHHHHHHHH
Confidence            9999988   6888888776541      1246788999999999999998887544322111 00000  000000000


Q ss_pred             hchHHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 014516          275 VETYQIWKEELDWNESLIKQYVGRE---ALWLHRRFLS  309 (423)
Q Consensus       275 ~~~~~~~~eEL~~~~~~I~~~p~ne---SaW~yrr~Ll  309 (423)
                      .....-+.+.+.....++..+|++.   .+|..+..+.
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~  213 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY  213 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence            0011236778899999999988753   5677655544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.85  E-value=0.064  Score=60.40  Aligned_cols=160  Identities=6%  Similarity=-0.143  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHH-HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH--HHHHhhhccChhHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWN-SRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW--VINMISRNCSTLQW  189 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn-~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw--ll~~l~~~~~~~~~  189 (423)
                      ..+++...++|..+|++..+.+ +-.... ..   ....+++..+++++  .|.+......+..  +....+.       
T Consensus        51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~---G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gd-------  117 (822)
T PRK14574         51 APVLDYLQEESKAGPLQSGQVDDWLQIAG-WA---GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKR-------  117 (822)
T ss_pred             HHHHHHHHHHHhhCccchhhHHHHHHHHH-Hc---CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCC-------
Confidence            4788888888888888853333 111111 12   24567777777777  3333333333322  2222222       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN  269 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~  269 (423)
                       +.+.++++.++++.+|.|-.++..-  .+........++.++.+.++...+|.+... -.+.++.....          
T Consensus       118 -yd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~----------  183 (822)
T PRK14574        118 -WDQALALWQSSLKKDPTNPDLISGM--IMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD----------  183 (822)
T ss_pred             -HHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc----------
Confidence             5677778888888888887777533  222222234667777777777777775443 33333332210          


Q ss_pred             CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                -..++++..++++..+|+|..+..-+-.++
T Consensus       184 ----------~~~~AL~~~ekll~~~P~n~e~~~~~~~~l  213 (822)
T PRK14574        184 ----------RNYDALQASSEAVRLAPTSEEVLKNHLEIL  213 (822)
T ss_pred             ----------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                      122377777777777777777765544433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.76  E-value=0.01  Score=44.82  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       166 ~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      +..+|..+.-++...+.        +.+.+..+.++++.+|.+..+|..++-+...++. .+.+.++.+++.+++||
T Consensus         2 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGD--------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHcCc
Confidence            56788888888877665        7899999999999999999999999999988862 37899999999999987

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.74  E-value=0.042  Score=41.32  Aligned_cols=97  Identities=13%  Similarity=0.022  Sum_probs=64.3

Q ss_pred             HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516          133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       133 Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      |..+..+....+   .+.+.+..+..++...|++..+|..+..++.....        +...+..+..++...|.+..+|
T Consensus         3 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~   71 (100)
T cd00189           3 LLNLGNLYYKLG---DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------YEEALEDYEKALELDPDNAKAY   71 (100)
T ss_pred             HHHHHHHHHHHh---cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCcchhHH
Confidence            444444444443   56777888888888888887777777777766544        5677777888888888877777


Q ss_pred             hHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          213 NHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      .....+....+.  +......+.+.+..+|
T Consensus        72 ~~~~~~~~~~~~--~~~a~~~~~~~~~~~~   99 (100)
T cd00189          72 YNLGLAYYKLGK--YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHh--HHHHHHHHHHHHccCC
Confidence            666655544433  5555666666666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.57  E-value=0.47  Score=53.57  Aligned_cols=160  Identities=13%  Similarity=-0.019  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCC-----CCCCCccchHHHHHHHHHHHHhCCCcHHHHHHH--HHHHHccCCcCCHHHHHH
Q 014516           82 YKAAKHAFISALRQYKTPGNFS-----GKSQDDTLAIEVMIHSKALLLLSCDFATAWNSR--KLIVSNKRLLPILMDELH  154 (423)
Q Consensus        82 Y~~A~~~f~~~l~~y~~~~~~~-----~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~R--k~lL~~~~~~~~~~~EL~  154 (423)
                      |..|...|.++++........+     .-. .....++++...++++  +|++....-.+  ..+....+   .+.+++.
T Consensus        50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g---dyd~Aie  123 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK---RWDQALA  123 (822)
T ss_pred             HHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC---CHHHHHH
Confidence            4577777777776443321110     000 1133578888888888  66666665555  44555554   7899999


Q ss_pred             HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      ++..++..+|+++.++..-  ++.....      .-..+.+..+.++...+|.|... --+..+......  ..++++..
T Consensus       124 ly~kaL~~dP~n~~~l~gL--a~~y~~~------~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~--~~~AL~~~  192 (822)
T PRK14574        124 LWQSSLKKDPTNPDLISGM--IMTQADA------GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR--NYDALQAS  192 (822)
T ss_pred             HHHHHHhhCCCCHHHHHHH--HHHHhhc------CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--HHHHHHHH
Confidence            9999999999999999633  2222211      12678999999999999997776 666666654333  44599999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHh
Q 014516          235 RNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ++++..+|.|.....-+...+.++
T Consensus       193 ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        193 SEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc
Confidence            999999999999987777777664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.34  Score=50.39  Aligned_cols=135  Identities=13%  Similarity=0.013  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      ...+.+..++..+|+.||+...+|.--+-=.-.+.+        -..+++...+|++.+|+.|.||.--+.....|.-  
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--  413 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--  413 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence            457888999999999999999999754433333332        3678899999999999999999987777766643  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                      -.-.|-+..+.+..-|.|---|.-.+-...++.                    ..++++.+.+.+|...--+-++-.+..
T Consensus       414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~--------------------~~~eAiKCykrai~~~dte~~~l~~La  473 (559)
T KOG1155|consen  414 HFYALYYFQKALELKPNDSRLWVALGECYEKLN--------------------RLEEAIKCYKRAILLGDTEGSALVRLA  473 (559)
T ss_pred             hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHhccccchHHHHHHH
Confidence            567899999999999999999988887776652                    367889999999987777778888877


Q ss_pred             HHHHH
Q 014516          307 FLSMY  311 (423)
Q Consensus       307 ~Ll~~  311 (423)
                      .|...
T Consensus       474 kLye~  478 (559)
T KOG1155|consen  474 KLYEE  478 (559)
T ss_pred             HHHHH
Confidence            77665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.22  E-value=0.069  Score=40.06  Aligned_cols=85  Identities=18%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|..+..++...+   ..++.+..+..++..+|++..+|.....+....+.        +
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   84 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK--------Y   84 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh--------H
Confidence            467888899999999999999999999888764   68899999999999999999888888777766554        5


Q ss_pred             HHHHHHHHHHHHhcCC
Q 014516          192 ERESELVEKIAERSKM  207 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pk  207 (423)
                      ......+..+++.+|.
T Consensus        85 ~~a~~~~~~~~~~~~~  100 (100)
T cd00189          85 EEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHccCCC
Confidence            6677778888877763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.20  E-value=0.36  Score=48.08  Aligned_cols=50  Identities=12%  Similarity=0.146  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      +.+....+.++++.+|.+-+++....-++...+.  +++.+.++.+++...+
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~~l~~~~  179 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccC
Confidence            3444555555555555554444444444433322  4444555555555443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.19  E-value=0.46  Score=47.31  Aligned_cols=133  Identities=10%  Similarity=-0.065  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          116 MIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       116 L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ......+...+|.+   ......|..+....+   +..+.+.++..++..+|++..+|.. ......++.....    ..
T Consensus        26 ~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~----~~   97 (355)
T cd05804          26 AAKAAAAAQALAARATERERAHVEALSAWIAG---DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM----RD   97 (355)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC----ch
Confidence            44455555555544   556666666666554   7899999999999999999999886 4444333322111    12


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .....+......+|...++.....+++...+.  +.+.+..+.+.+..+|.|..+++....++...
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          98 HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--YDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            22233333556777777787777888877665  78889999999999999999999998887664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.07  E-value=0.086  Score=47.52  Aligned_cols=115  Identities=8%  Similarity=-0.039  Sum_probs=83.1

Q ss_pred             HHHHHhCCCcHHH--HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHH
Q 014516          120 KALLLLSCDFATA--WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERE  194 (423)
Q Consensus       120 ~~lLl~nPe~~Ta--Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~E  194 (423)
                      ..++.++++...+  +..++.+....+   ++++++..+..++..+|+..   .+|.....++..++.        ++..
T Consensus        23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A   91 (172)
T PRK02603         23 LKILPINKKAKEAFVYYRDGMSAQADG---EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKA   91 (172)
T ss_pred             HHHcccccHhhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHH
Confidence            4444445544444  455666666554   78999999999998877653   567777777766655        6888


Q ss_pred             HHHHHHHHHhcCCCchhchHHHHHHHhcChh------------hHHHHHHHHHHHHhccCCCh
Q 014516          195 SELVEKIAERSKMNYRAWNHRCWLVSFMTRE------------QVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------------~~~~EL~~~~k~i~~d~~N~  245 (423)
                      +..+.+++..+|.+..++...+++....+..            .+...++...+.+..+|.|+
T Consensus        92 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         92 LEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            8999999999999999999998888766531            24556777777777777773

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.038  Score=57.93  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+.++..++++|..||++.++...|..+...++   .+...|.-+...+..+|.+...|....-++..+..        
T Consensus       373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--------  441 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--------  441 (539)
T ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--------
Confidence            3577888888899999999999999999999986   78899999999999999999999999988888766        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhc
Q 014516          191 IERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      +.+.++.+..+++.||.|--+=
T Consensus       442 ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  442 YDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHHHhcCchhHHHH
Confidence            7899999999999999875443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.00  E-value=0.13  Score=42.25  Aligned_cols=87  Identities=13%  Similarity=0.008  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccC
Q 014516          112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCS  185 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~  185 (423)
                      .+++++.+..++..+|++   .+++..+..++...+   .+.+++..+..++..+|.+   ..+|....+++.++..   
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---   91 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD---   91 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC---
Confidence            478999999999999987   578888999888875   7899999999999999886   5678888888877655   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          186 TLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                           +...+..+..+++.+|.+-
T Consensus        92 -----~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        92 -----KEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             -----hHHHHHHHHHHHHHCcCCh
Confidence                 6788899999999999864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.22  Score=48.17  Aligned_cols=137  Identities=11%  Similarity=-0.050  Sum_probs=104.3

Q ss_pred             ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516          109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-SNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL-~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~  187 (423)
                      ....+++++.++.+|.-||-|..+-- ||..+ .+.|   .-.+.++-+...|..+|....+|..-..+....+.     
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~K-RKlAilka~G---K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~-----  169 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIRK-RKLAILKAQG---KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD-----  169 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHHH-HHHHHHHHcC---CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH-----
Confidence            45678999999999999998876655 66544 4444   33488999999999999999999999888876654     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                         +..+.-|.+.++-..|-|+-...--.=++-.+ +.+..+....+..+.++.++.|+.+|.-....-..
T Consensus       170 ---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  170 ---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             ---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence               78888899999999999876543322222222 23456777899999999999999999776544433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.96  E-value=0.034  Score=41.42  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      ++++++..+..++..+|+++.+|.....++...+.        +.+.+....++++.+|.|
T Consensus        12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--------YDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777777776654        566667777777777765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.94  E-value=0.33  Score=51.57  Aligned_cols=97  Identities=11%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+++.+.||..+|.||..|+--+-.+.+-.  ...+.++.+.+++++-|.-.-+|.....-.-.+            
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl------------  511 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQLQPGYVRVRYNLGISCMNL------------  511 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh------------
Confidence            566667777777777777777766555554432  256677777777777777766666665443332            


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCC----------CccHHHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVG----------REALWLHRRFLS  309 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~----------neSaW~yrr~Ll  309 (423)
                              ..+++.+.+.-.+|.+.+.          ++.+|-++|..+
T Consensus       512 --------G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al  552 (579)
T KOG1125|consen  512 --------GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL  552 (579)
T ss_pred             --------hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence                    3578888888888877665          345999999444

>PRK11906 transcriptional regulator; Provisional

Probab=95.74  E-value=0.37  Score=50.31  Aligned_cols=155  Identities=7%  Similarity=-0.052  Sum_probs=118.4

Q ss_pred             HhCCCcH---HHH----HHHHHHHHccCCcCCHHHHHHHHHHHH---HhCCCchhHhHHHHHHHHHhhhc-cChhHHhHH
Q 014516          124 LLSCDFA---TAW----NSRKLIVSNKRLLPILMDELHLSALVL---SYSPKSEQAWSHRRWVINMISRN-CSTLQWIIE  192 (423)
Q Consensus       124 l~nPe~~---TaW----n~Rk~lL~~~~~~~~~~~EL~~~~~lL---~~nPK~y~~W~hRrwll~~l~~~-~~~~~~~~~  192 (423)
                      ..-|++.   .+|    ..|++-....+.......++.++..++   ..+|.+..++..+.|+--..... ..+......
T Consensus       242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~  321 (458)
T PRK11906        242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ  321 (458)
T ss_pred             cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            3447888   888    345543322222356788999999999   89999999999999987665221 122344567


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCC
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSG  272 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~  272 (423)
                      +.+.+..++++.||.|-.|=...+.++-..+.  ....+...++.+.++|+.-.+|.|+.++..-..             
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~--~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G-------------  386 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQ--AKVSHILFEQAKIHSTDIASLYYYRALVHFHNE-------------  386 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-------------
Confidence            88899999999999999988887777766554  778899999999999999999999999876531             


Q ss_pred             chhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          273 YFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       273 ~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                             -.++.++.+.++++.+|..-.
T Consensus       387 -------~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        387 -------KIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             -------CHHHHHHHHHHHhccCchhhH
Confidence                   257788999999999997543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.73  E-value=0.23  Score=55.07  Aligned_cols=101  Identities=12%  Similarity=0.059  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhH
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (423)
                      +++++..++..++..+|+++.+|..-.-|.++.+.        .++-+.+-..|+-.+|+++--|.+-.=+..+++.  +
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--i  223 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--I  223 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--H
Confidence            78999999999999999999999999999998876        6888899999999999999999887666666544  8


Q ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       228 ~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ..+.-+..++|+.+|.|.-----|..|..++
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            8999999999999999965444455566554

>PRK11906 transcriptional regulator; Provisional

Probab=95.72  E-value=0.21  Score=52.11  Aligned_cols=129  Identities=9%  Similarity=-0.074  Sum_probs=101.9

Q ss_pred             ccchHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHcc-----C-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH
Q 014516          109 DTLAIEVMIHSKALL---LLSCDFATAWNSRKLIVSNK-----R-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM  179 (423)
Q Consensus       109 ~~~~~~~L~~t~~lL---l~nPe~~TaWn~Rk~lL~~~-----~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~  179 (423)
                      .+....++.+...++   .++|++..++-.+..+-...     . ......+.+++...++..+|.++.+=.....++..
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            345678889999999   99999998777766654332     1 13456778999999999999999886666655554


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC  247 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa  247 (423)
                      ...        +...+...++++..+|..-.+|.+++|+....+.  .++.++.+++.++++|.---+
T Consensus       351 ~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        351 SGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCchhhHH
Confidence            433        5778889999999999999999999999887665  788999999999999965444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.69  E-value=0.25  Score=44.40  Aligned_cols=99  Identities=12%  Similarity=-0.029  Sum_probs=84.7

Q ss_pred             ceEeecccccch-----hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHH
Q 014516           63 SFWIRDHKLGIS-----TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRK  137 (423)
Q Consensus        63 p~~~~~~~Lgi~-----~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk  137 (423)
                      .|+..|.+|++-     ...+-.+|..|...+..                  ...+++...+..+..++|.+...|..-+
T Consensus        15 ~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~------------------G~l~~A~~~f~~L~~~Dp~~~~y~~gLG   76 (157)
T PRK15363         15 RFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEV------------------KEFAGAARLFQLLTIYDAWSFDYWFRLG   76 (157)
T ss_pred             HHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            477788887654     55667799999654322                  3358899999999999999999999999


Q ss_pred             HHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh
Q 014516          138 LIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR  182 (423)
Q Consensus       138 ~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~  182 (423)
                      .+.+..+   .+.+++.....++..+|++|..-.|-..++..+++
T Consensus        77 ~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         77 ECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            9999986   89999999999999999999999999999998876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.68  E-value=0.048  Score=41.45  Aligned_cols=58  Identities=19%  Similarity=0.069  Sum_probs=52.6

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHh
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAW  170 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W  170 (423)
                      ...+++++..+.++.++|++..+|..|+.++...+   .+.+++..++.++..+|+..++=
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHHH
Confidence            44688999999999999999999999999999986   89999999999999999877653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.75  Score=47.95  Aligned_cols=134  Identities=13%  Similarity=0.059  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+.++.....+|.+||....||-.-+-=...+   +.-..++.....++..||..|-+|.--+.....+.-        .
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--------h  414 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--------H  414 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--------h
Confidence            47788999999999999999998766433333   355788999999999999999999987776665543        4


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .-.|-+..++++.-|..-..|.--+-+...++.  .++++...++.+...-.|-+|..+...+-.++
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            678899999999999888888877777777765  78899999999998888889988888877775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.65  E-value=0.039  Score=41.10  Aligned_cols=53  Identities=17%  Similarity=0.112  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE  167 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y  167 (423)
                      .++++..++.++..+|++..+|...+.++...+   .+.+++..+..++..+|.++
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence            588999999999999999999999999999876   89999999999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.56  E-value=0.12  Score=46.62  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--
Q 014516          111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS--  185 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~--  185 (423)
                      ..++++..+..++.++|+.   ..+|.....+....+   .+++.+..+..++..+|++...+.....++..++....  
T Consensus        50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG---EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence            3578899999999887764   468888888888875   78999999999999999999999999988877654211  


Q ss_pred             ----hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          186 ----TLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       186 ----~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                          .....+...+++..+++..+|.||
T Consensus       127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        127 GDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                122346788899999999999985

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.53  E-value=0.2  Score=54.74  Aligned_cols=122  Identities=11%  Similarity=0.021  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++.-+...+=.+.|....+|+.|++++...+   ...++...+..+|..+|....+=.--.-++...+...      +
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~---~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~------l  736 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG---QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR------L  736 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH---hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc------h
Confidence            456666777777788888888888888777654   6788899999999999999888887777777777432      3


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      ...-.+...+++.||.|--||.+-+-++...+.  ....-+.+...+.++++|
T Consensus       737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHHHHHHhhccCC
Confidence            344457888899999999999998888888775  566677777777666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.48  E-value=0.17  Score=54.41  Aligned_cols=100  Identities=13%  Similarity=0.007  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ...|+....+|.-.|+|..---.++..|..++   ..+++...+...++.+++|+-.|+--+-+...-        .-+.
T Consensus        24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--------K~Y~   92 (700)
T KOG1156|consen   24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--------KKYD   92 (700)
T ss_pred             HhHHHHHHHHHHhCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhh--------hhHH
Confidence            56788999999999999999999999998886   678999999999999999999998666544332        2378


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (423)
                      +.+.+...|+..+|.|-..|.--..+-.+|.
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999988777776664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.44  E-value=0.35  Score=46.12  Aligned_cols=124  Identities=8%  Similarity=-0.119  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ...+.+..+++|..+|.+|-+|..|..+.+..+   ..+.+-+...++|+.+|++-.+-|.=+|.|-..+.        +
T Consensus        51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--------~  119 (250)
T COG3063          51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--------P  119 (250)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--------h
Confidence            466778899999999999999999999999987   56777888899999999999999988888776654        5


Q ss_pred             HHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516          192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF  248 (423)
Q Consensus       192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW  248 (423)
                      ++.+...++++.  .+|--+-.|..-+||--+++.  ....-++.++.+..||.+-.+-
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHHHHHHhCcCCChHH
Confidence            677777777776  356666789999999877665  5667788999999999887763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.39  E-value=0.47  Score=38.73  Aligned_cols=99  Identities=9%  Similarity=-0.055  Sum_probs=75.1

Q ss_pred             HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC---
Q 014516          135 SRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---  208 (423)
Q Consensus       135 ~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---  208 (423)
                      .....+...   ..+.+++..+..++..+|++   .+++.....++...+.        +...+..+..++..+|.+   
T Consensus         7 ~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         7 DAALLVLKA---GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcc
Confidence            334444444   37899999999999999987   4566666666665554        688999999999999986   


Q ss_pred             chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516          209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS  246 (423)
Q Consensus       209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S  246 (423)
                      -.+|...++++..++.  ..+.+..+.+.+..+|.+--
T Consensus        76 ~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        76 PDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             cHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCChh
Confidence            3467777778776654  77888999999999988753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.39  E-value=0.9  Score=48.70  Aligned_cols=154  Identities=8%  Similarity=-0.096  Sum_probs=100.8

Q ss_pred             HhCCCcHHHHHH--HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516          124 LLSCDFATAWNS--RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (423)
Q Consensus       124 l~nPe~~TaWn~--Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (423)
                      ..-|.+.+||..  |++-............++.+++.++..+|.+..+|..+.++..............+........++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345777788874  554333322234578999999999999999999999887765433222211111233444445555


Q ss_pred             HHh--cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHH
Q 014516          202 AER--SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQ  279 (423)
Q Consensus       202 l~~--~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  279 (423)
                      +..  +|..-  ..|...-+..+....+++.....++.+.++|+ .-+|.++..+.....                    
T Consensus       411 ~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G--------------------  467 (517)
T PRK10153        411 VALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKG--------------------  467 (517)
T ss_pred             hhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcC--------------------
Confidence            553  55443  34444433333334688999999999999994 567777776655421                    


Q ss_pred             HHHHHHHHHHHHHhhcCCCcc
Q 014516          280 IWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       280 ~~~eEL~~~~~~I~~~p~neS  300 (423)
                      ..++.++...++++++|+++.
T Consensus       468 ~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        468 DNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCCch
Confidence            267889999999999999985

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.21  E-value=0.086  Score=54.84  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH---hHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA---WSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~---W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (423)
                      .+|+++.+|+.++..+...+   ++++++..++.+|..+|.+..+   |+.+..++.+++.        .++.++.+.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lG---ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--------~dEAla~LrrA  138 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKG---RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--------GKKAADCLRTA  138 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence            69999999999999999886   8999999999999999999865   9999999999876        68899999999


Q ss_pred             HHhcCCCc
Q 014516          202 AERSKMNY  209 (423)
Q Consensus       202 l~~~pkNY  209 (423)
                      ++.++..|
T Consensus       139 Lelsn~~f  146 (453)
T PLN03098        139 LRDYNLKF  146 (453)
T ss_pred             HHhcchhH
Confidence            99844334

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.14  E-value=0.13  Score=39.08  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                      .++++.+..++.++..+|.++.+|..+..++...+.        +...+..++++++..|.+-
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGR--------YEEALEDLERALELSPDDP   63 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCcH
Confidence            478999999999999999999999999999998876        7899999999999999653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.07  E-value=0.21  Score=52.90  Aligned_cols=104  Identities=11%  Similarity=0.037  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++++|++.+|..+|.+|+.||--+-.|-+..   ...+++.-...+|...|.+.-+|+.-.-.--.++.        +
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--------y  514 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--------Y  514 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--------H
Confidence            588999999999999999999999999998874   67999999999999999999999887765555554        7


Q ss_pred             HHHHHHHHHHHHhcCCCc----------hhchHHHHHHHhcChhh
Q 014516          192 ERESELVEKIAERSKMNY----------RAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY----------~AW~hR~wll~~~~~~~  226 (423)
                      .+.....-.+|...++++          .+|..-+-++..|...+
T Consensus       515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            888888888888888833          37888777776666543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=94.97  E-value=1.7  Score=43.93  Aligned_cols=166  Identities=12%  Similarity=0.034  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------------hHhHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------------QAWSHRRWVIN  178 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------------~~W~hRrwll~  178 (423)
                      +..+|.-.+.+|.+-|+++.|=.-|+-++...+   .++++..=++.+|..+|.+-             +-|+-|..+.+
T Consensus        88 sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G---ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s  164 (504)
T KOG0624|consen   88 SKAALQDLSRVLELKPDFMAARIQRGVVLLKQG---ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS  164 (504)
T ss_pred             CccchhhHHHHHhcCccHHHHHHHhchhhhhcc---cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence            455777788999999999999999999998876   68888888999999999543             33444444443


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      -....      .....++++..+++..|=.-....+|.=++-.-+.  ....+..+...-++-..|..+..--..|+-.+
T Consensus       165 ~~~~G------D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  165 ASGSG------DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--PKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HhcCC------chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            33221      26788999999999999776666677655544332  45566666666666666666655455555443


Q ss_pred             hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      .                    -.+.-|.-+...+..||+|-+..-+...|
T Consensus       237 g--------------------d~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  237 G--------------------DAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             h--------------------hHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            1                    13445566677788889988887665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.78  E-value=1.5  Score=46.01  Aligned_cols=119  Identities=8%  Similarity=-0.086  Sum_probs=102.0

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      |.-..+|.-+...-...+   .+++++..++.++...|+|+..|..+..++....+        ..+.++...+++..+|
T Consensus       303 ~~~~aa~YG~A~~~~~~~---~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l~P  371 (484)
T COG4783         303 RGGLAAQYGRALQTYLAG---QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------AKEAIERLKKALALDP  371 (484)
T ss_pred             ccchHHHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCC
Confidence            677778877765544443   67899999999999999999999999999887766        5789999999999999


Q ss_pred             CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .++..|--..-.+-..+.  ..+.+...+..+..+|.|--+|.|.......+
T Consensus       372 ~~~~l~~~~a~all~~g~--~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~  421 (484)
T COG4783         372 NSPLLQLNLAQALLKGGK--PQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL  421 (484)
T ss_pred             CccHHHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence            999999888888877766  45889999999999999999999998877765

>TIGR00540 hemY_coli hemY protein

Probab=94.72  E-value=2  Score=44.30  Aligned_cols=174  Identities=7%  Similarity=-0.202  Sum_probs=114.0

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC---CCch-----hHhHHHH-------
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS---PKSE-----QAWSHRR-------  174 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n---PK~y-----~~W~hRr-------  174 (423)
                      ...+.++...+.++..+|++..+...-..+....+   ++++.+..+..+++..   |..+     .+|...-       
T Consensus       167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~---d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG---AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34678889999999999999999888888777764   6777777777777653   3333     2232211       


Q ss_pred             --HHHHHhhhccC-----h------------hHHhHHHHHHHHHHHHHhcCCCchhc--hHHHHHHHhcChhhHHHHHHH
Q 014516          175 --WVINMISRNCS-----T------------LQWIIERESELVEKIAERSKMNYRAW--NHRCWLVSFMTREQVLDELKK  233 (423)
Q Consensus       175 --wll~~l~~~~~-----~------------~~~~~~~EL~~~~~~l~~~pkNY~AW--~hR~wll~~~~~~~~~~EL~~  233 (423)
                        -.+.......+     +            .....+..+..+.++++.+|.+....  ..+...  .+.......-++.
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l~~~~~~~~~~~  321 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RLKPEDNEKLEKL  321 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hcCCCChHHHHHH
Confidence              01111111000     0            01225788899999999999986543  222222  2222345667899


Q ss_pred             HHHHHhccCCCh--hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH--HHHhhcCCCccHHHHHHHHH
Q 014516          234 SRNWSGLHVADN--SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE--SLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       234 ~~k~i~~d~~N~--SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~--~~I~~~p~neSaW~yrr~Ll  309 (423)
                      +++|++.+|.|.  .......++..+..                    .+.+..++.+  .++..+|+++... +...++
T Consensus       322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~--------------------~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll  380 (409)
T TIGR00540       322 IEKQAKNVDDKPKCCINRALGQLLMKHG--------------------EFIEAADAFKNVAACKEQLDANDLA-MAADAF  380 (409)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHH
Confidence            999999999999  76777777776531                    3778888888  5778899998866 434443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=94.71  E-value=1.1  Score=49.19  Aligned_cols=138  Identities=7%  Similarity=-0.009  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (423)
                      ..|-.+..+....+   .-.++.-++..+-...|-+..+|+-|+-++...+.        +.+..+....++..||....
T Consensus       651 ~lwllaa~~~~~~~---~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------~~EA~~af~~Al~ldP~hv~  719 (799)
T KOG4162|consen  651 KLWLLAADLFLLSG---NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------LEEAKEAFLVALALDPDHVP  719 (799)
T ss_pred             HHHHHHHHHHHhcC---CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------hHHHHHHHHHHHhcCCCCcH
Confidence            35555555544443   34667777888888899999999999877766554        78899999999999999888


Q ss_pred             hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHH
Q 014516          211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNES  290 (423)
Q Consensus       211 AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~  290 (423)
                      +=+--+=++...+.+....--.....+++.||.|..+|.|.+.++.+...                    .++..++.+.
T Consensus       720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--------------------~~~Aaecf~a  779 (799)
T KOG4162|consen  720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--------------------SKQAAECFQA  779 (799)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------------------hHHHHHHHHH
Confidence            77776666666665444444457788999999999999999999987521                    4567778888


Q ss_pred             HHhhcCCCc
Q 014516          291 LIKQYVGRE  299 (423)
Q Consensus       291 ~I~~~p~ne  299 (423)
                      ++...+++.
T Consensus       780 a~qLe~S~P  788 (799)
T KOG4162|consen  780 ALQLEESNP  788 (799)
T ss_pred             HHhhccCCC
Confidence            888777664

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=94.65  E-value=3.5  Score=44.90  Aligned_cols=169  Identities=12%  Similarity=0.055  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------------------------------CcCCHHHHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------------------------------LLPILMDELHLSALV  159 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------------------------------~~~~~~~EL~~~~~l  159 (423)
                      -.++++++.+.+|..-|++.-.|-..+++....+                               ....+.++-..++..
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            4588999999999999999999999999987753                               011344555566666


Q ss_pred             HHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh---------------
Q 014516          160 LSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR---------------  224 (423)
Q Consensus       160 L~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~---------------  224 (423)
                      ..+|||+.-+|--.--+=.+.+.        .+..-.++.++|+.-|+|--.|.-..|+..+-.+               
T Consensus       746 rlkNPk~~~lwle~Ir~ElR~gn--------~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp  817 (913)
T KOG0495|consen  746 RLKNPKNALLWLESIRMELRAGN--------KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP  817 (913)
T ss_pred             HhcCCCcchhHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence            66777777777533222222222        3444468899999999999999999998654321               


Q ss_pred             -------------hhHHHHHHHHHHHHhccCCChhHHH--HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH
Q 014516          225 -------------EQVLDELKKSRNWSGLHVADNSCFH--YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE  289 (423)
Q Consensus       225 -------------~~~~~EL~~~~k~i~~d~~N~SaW~--yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~  289 (423)
                                   ..++...+.+.+.++.||+|-.+|.  |+..+...-.                      ++--+..+
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e----------------------ed~kev~~  875 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE----------------------EDQKEVLK  875 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH----------------------HHHHHHHH
Confidence                         1245567777788888887766554  4444333210                      11122345


Q ss_pred             HHHhhcCCCccHHHHHHHHH
Q 014516          290 SLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       290 ~~I~~~p~neSaW~yrr~Ll  309 (423)
                      +.....|.|--.|.--+.-+
T Consensus       876 ~c~~~EP~hG~~W~avSK~i  895 (913)
T KOG0495|consen  876 KCETAEPTHGELWQAVSKDI  895 (913)
T ss_pred             HHhccCCCCCcHHHHHhhhH
Confidence            55666798888887755444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.52  E-value=0.82  Score=40.82  Aligned_cols=105  Identities=8%  Similarity=-0.031  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      ..+|+....+....+   .+++++..+..++...|+++   .+|.....+....+.        .++.+.++.+++..+|
T Consensus        35 a~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         35 AFTYYRDGMSAQSEG---EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc
Confidence            455666666666554   67888888888887776643   366666666666554        5778888888888888


Q ss_pred             CCchhchHHHHHHHhcChh------------hHHHHHHHHHHHHhccCCCh
Q 014516          207 MNYRAWNHRCWLVSFMTRE------------QVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~------------~~~~EL~~~~k~i~~d~~N~  245 (423)
                      .+-.+|.....+....+..            .+.+.+....+.+..+|.++
T Consensus       104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8888888887777644320            12344555555666666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.39  E-value=0.5  Score=42.21  Aligned_cols=96  Identities=14%  Similarity=0.043  Sum_probs=76.0

Q ss_pred             chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc----
Q 014516          111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN----  183 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~----  183 (423)
                      ..++++..+..++.+.|++   .++|...+.+....+   ..++++..+..++..+|.....|.....+...+...    
T Consensus        50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~  126 (168)
T CHL00033         50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG---EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ  126 (168)
T ss_pred             CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence            4578999999999888774   458888888888875   789999999999999999999999999888855421    


Q ss_pred             cC--hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          184 CS--TLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       184 ~~--~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                      +.  .....+.+.+.+..+++..+|.++
T Consensus       127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        127 GDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            11  112346677888899999999876

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.28  E-value=7.2  Score=44.18  Aligned_cols=213  Identities=11%  Similarity=-0.022  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCC--C--CC-CCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNFS--G--KS-QDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHL  155 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~~--~--~~-~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~  155 (423)
                      -|+.|...|..++..-......+  .  -+ ....+.+.++.+...+|.+||.+..+--.-..+-....+...+...+.+
T Consensus       179 dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l  258 (1018)
T KOG2002|consen  179 DYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL  258 (1018)
T ss_pred             cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            47777777777665322221111  0  00 0233567899999999999998888777666655554444568889999


Q ss_pred             HHHHHHhCCCchhHhHHHHHHHHH-------------hhhcc-C-h--------------hHHhHHHHHHHHHHHHHhcC
Q 014516          156 SALVLSYSPKSEQAWSHRRWVINM-------------ISRNC-S-T--------------LQWIIERESELVEKIAERSK  206 (423)
Q Consensus       156 ~~~lL~~nPK~y~~W~hRrwll~~-------------l~~~~-~-~--------------~~~~~~~EL~~~~~~l~~~p  206 (423)
                      +..+.+.||+||.+-+|-.--+-.             ..... . .              ....++........++..+|
T Consensus       259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            999999999999998875421110             00000 0 0              12336788889999999999


Q ss_pred             CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHH
Q 014516          207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELD  286 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~  286 (423)
                      .| +...|-+..--++...+++......++.+...|+|+-...-.+.|.....                ......+...+
T Consensus       339 d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~----------------~~~~~~d~a~~  401 (1018)
T KOG2002|consen  339 DN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA----------------KKQEKRDKASN  401 (1018)
T ss_pred             CC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh----------------hhhHHHHHHHH
Confidence            88 33333332222222334667778889999999999988766665544321                01124566777


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHH
Q 014516          287 WNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       287 ~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +..+.....|.|.-+|.-+..|+.
T Consensus       402 ~l~K~~~~~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  402 VLGKVLEQTPVDSEAWLELAQLLE  425 (1018)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHH
Confidence            788888888999999988887664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.15  E-value=0.47  Score=51.10  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      ..+..-|.+...+|+++|+....-.-.+-.|-.++.        -++...+|...+..|++++-||+-=+.+.+.-  ..
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~   90 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KK   90 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------hHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hh
Confidence            468899999999999999999999999888888776        47888999999999999999998766665442  35


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL  259 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~  259 (423)
                      +.+.+.....++..++.|-+-|.-...|-.+|.
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999999998877774

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.10  E-value=1.4  Score=39.62  Aligned_cols=105  Identities=10%  Similarity=-0.091  Sum_probs=80.2

Q ss_pred             HhC-CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516          124 LLS-CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA  202 (423)
Q Consensus       124 l~n-Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l  202 (423)
                      .+. ++....-.-..-.+...+   +++++..++..+...+|.++.-|..-.-+.+.++.        +.+.+.+..+++
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G---~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--------~~~AI~aY~~A~   96 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVK---EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--------WGEAIYAYGRAA   96 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHH
Confidence            444 444444444455555554   79999999999999999999999999999988876        899999999999


Q ss_pred             HhcCCCchhchHHHHHHHhcChh-hHHHHHHHHHHHHh
Q 014516          203 ERSKMNYRAWNHRCWLVSFMTRE-QVLDELKKSRNWSG  239 (423)
Q Consensus       203 ~~~pkNY~AW~hR~wll~~~~~~-~~~~EL~~~~k~i~  239 (423)
                      ..+|.++.+-.|.+-+.-.++.. .-.+-+..+-.|+.
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998777651 12233444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.04  E-value=0.47  Score=44.50  Aligned_cols=91  Identities=13%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCchh-----HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh
Q 014516          147 PILMDELHLSALVLSYSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF  221 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~  221 (423)
                      .+++++..-+..+|...|..++     ++..|.-++-++..        ++..+.-|.++++++|.+-.|---|..+..+
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------WESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------HHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            3688889999999999888876     23333333333333        8899999999999999999999999999999


Q ss_pred             cChhhHHHHHHHHHHHHhccCCChhH
Q 014516          222 MTREQVLDELKKSRNWSGLHVADNSC  247 (423)
Q Consensus       222 ~~~~~~~~EL~~~~k~i~~d~~N~Sa  247 (423)
                      +..  +++.|+.+++.++.||++.-|
T Consensus       181 ~ek--~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  181 MEK--YEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             hhh--HHHHHHHHHHHHHhCcchHHH
Confidence            855  889999999999999998743

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.03  E-value=0.23  Score=36.99  Aligned_cols=59  Identities=12%  Similarity=-0.106  Sum_probs=52.3

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH  172 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h  172 (423)
                      ..+++++.+..++..+|++..++.....++...+   .++++...+..++..+|+++.+|.-
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3578999999999999999999999999999886   7999999999999999998776653

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.01  E-value=1.4  Score=43.11  Aligned_cols=89  Identities=12%  Similarity=0.002  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC---chhHhHHHHHHHHHhhhccC
Q 014516          112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK---SEQAWSHRRWVINMISRNCS  185 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK---~y~~W~hRrwll~~l~~~~~  185 (423)
                      .++++..+..++...|+.   ..++.+.+.+....+   ++++++..+..++..+|+   .+.+|.....+...++.   
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g---~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~---  232 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG---KKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD---  232 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC---
Confidence            478999999999999998   478888999888775   789999999999987776   46777777777766544   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                           .......+.++++.+|.+-.|
T Consensus       233 -----~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        233 -----TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             -----HHHHHHHHHHHHHHCcCCHHH
Confidence                 688889999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=93.98  E-value=10  Score=43.08  Aligned_cols=203  Identities=9%  Similarity=-0.068  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhc--cC-hhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRN--CS-TLQ  188 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~--~~-~~~  188 (423)
                      ..++..+...+|.+|..+.+||.+=+.+-.........++-.....+-...+|+.|.+=.-=-..++.+.+.  .+ .-.
T Consensus       546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k  625 (1018)
T KOG2002|consen  546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK  625 (1018)
T ss_pred             cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence            466777888888888888888888775443332011111112222222223355555443222333333321  12 223


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc------
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF------  262 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~------  262 (423)
                      ....+++++..++|+.||||-||=+=-+-|+..-+.  +...++-+.+..+.-..+..+|-....++.-....+      
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999998888888766543  334444433333333344445544444433221100      


Q ss_pred             --cccC---CCCCC-----CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q 014516          263 --CYTQ---DNNSS-----GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHM  316 (423)
Q Consensus       263 --~~~~---~~~~~-----~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~  316 (423)
                        |...   .+.+.     +..-.....+.+..++...++...|+|.++=+++..++..+....
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence              0000   00000     000001234778889999999999999999988888776654433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=93.97  E-value=0.88  Score=51.59  Aligned_cols=131  Identities=7%  Similarity=-0.204  Sum_probs=98.2

Q ss_pred             HHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh----h------HHhH
Q 014516          122 LLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST----L------QWII  191 (423)
Q Consensus       122 lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~----~------~~~~  191 (423)
                      +...+|.+..+|-.=-......   ..+++.+..++..+..+|+...+|.+-+.+..+.......    +      ..-+
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~   99 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW   99 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence            3456777887776554444333   4789999999999999999999999999976655443210    0      0012


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                       .-.+.+..++..++.|-+|-...+-+..+++.  ..+.++..++.++.||.|..+-++..+.+...
T Consensus       100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence             33455555566678787898889999988876  78889999999999999999999999887753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.63  E-value=2.1  Score=40.93  Aligned_cols=126  Identities=8%  Similarity=-0.081  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      .+...+..-++++|..+|++|-+|.-|..+.++++.        .+..-+-..+++..+|+|=.+=+.=+|.+...+.  
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--  118 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--  118 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--
Confidence            368889999999999999999999999999999876        3556678899999999998888887777766554  


Q ss_pred             HHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHH
Q 014516          227 VLDELKKSRNWSGL--HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALW  302 (423)
Q Consensus       227 ~~~EL~~~~k~i~~--d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW  302 (423)
                      +++.+..+++.+..  -+.=.-.|-....+-.+..                    -.+..-++.++.++.+|++..+-
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g--------------------q~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAG--------------------QFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC--------------------CchhHHHHHHHHHHhCcCCChHH
Confidence            67788888887752  1222234444444433321                    13455677888999999988753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=7.8  Score=37.74  Aligned_cols=164  Identities=6%  Similarity=-0.069  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ..-+-.++..+-.--|..+-+=-....++++.+   ..+++++..+.+|..+|-+..+.- |+-.+.+-...       -
T Consensus        68 ~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~---~~~~A~e~y~~lL~ddpt~~v~~K-RKlAilka~GK-------~  136 (289)
T KOG3060|consen   68 DDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG---NYKEAIEYYESLLEDDPTDTVIRK-RKLAILKAQGK-------N  136 (289)
T ss_pred             hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh---chhhHHHHHHHHhccCcchhHHHH-HHHHHHHHcCC-------c
Confidence            456777888877777999999999999999886   789999999999999998776655 55555443221       1


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      .+.+.-+..-++..+..--||.+-.=+.-.++  +++...-..+.++-..|-|+-.+.-..-++.-+.+           
T Consensus       137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-----------  203 (289)
T KOG3060|consen  137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-----------  203 (289)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-----------
Confidence            36777888889999999999988766654443  47888888899999999887665444444443311           


Q ss_pred             CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          272 GYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                            .+.+.-...|..+++..+|.|.-+|+-.
T Consensus       204 ------~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  204 ------AENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             ------HHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence                  1245566788899999999888888753

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=93.44  E-value=3.3  Score=43.46  Aligned_cols=102  Identities=8%  Similarity=-0.019  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++..+..++..-|+|...|-.+..++...+   ...++++....++...|.++.+|.-....+.+.++        .
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--------~  390 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--------P  390 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--------h
Confidence            477889999999999999999999999998875   78999999999999999999999999998888876        4


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (423)
                      .+.+..+...+..+|.+-..|.+=.-.....+.
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            688899999999999999999997666666553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.41  E-value=2.3  Score=45.68  Aligned_cols=126  Identities=7%  Similarity=-0.060  Sum_probs=86.9

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc---CC--cCCHHHHHHHHHHHHHh--CCCchhHhHHHHHHHHHhhh
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK---RL--LPILMDELHLSALVLSY--SPKSEQAWSHRRWVINMISR  182 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~---~~--~~~~~~EL~~~~~lL~~--nPK~y~~W~hRrwll~~l~~  182 (423)
                      .....++.+.+.++.++|++..||-.+..+-...   ..  ...+.........++..  .|-.+.  .|....+..+..
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~--~~~ala~~~~~~  433 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR--IYEILAVQALVK  433 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH--HHHHHHHHHHhc
Confidence            3356888999999999999999888765533211   10  01123334444444443  444443  344444444333


Q ss_pred             ccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516          183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS  246 (423)
Q Consensus       183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S  246 (423)
                      .      -+++.....+++++.+| +.-+|...+.+....+.  .++.++.+.+.+.++|.+..
T Consensus       434 g------~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        434 G------KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             C------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence            1      27889999999999999 67888889988887776  78899999999999999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.32  E-value=0.31  Score=50.84  Aligned_cols=70  Identities=9%  Similarity=-0.071  Sum_probs=63.1

Q ss_pred             hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc---hhchHHHHHHHhcChhhHHHHHHHHHHHH
Q 014516          162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY---RAWNHRCWLVSFMTREQVLDELKKSRNWS  238 (423)
Q Consensus       162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY---~AW~hR~wll~~~~~~~~~~EL~~~~k~i  238 (423)
                      .+|+++.+|+.+...+.+++.        +++.+..++++++.+|.+.   .+|+++..++..++.  .++.++.+.+.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGr--------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrAL  139 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGR--------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTAL  139 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence            689999999999999988876        7999999999999999998   469999999999876  788899999999


Q ss_pred             hcc
Q 014516          239 GLH  241 (423)
Q Consensus       239 ~~d  241 (423)
                      +..
T Consensus       140 els  142 (453)
T PLN03098        140 RDY  142 (453)
T ss_pred             Hhc
Confidence            874

>TIGR00540 hemY_coli hemY protein

Probab=92.74  E-value=5.3  Score=41.20  Aligned_cols=129  Identities=8%  Similarity=-0.191  Sum_probs=93.0

Q ss_pred             HHHHHHHhCC----CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHH
Q 014516          118 HSKALLLLSC----DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIER  193 (423)
Q Consensus       118 ~t~~lLl~nP----e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~  193 (423)
                      ....+....|    +...++-.-...+...+   ..++++..+...+.++|++......   ++........   +....
T Consensus       247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g---~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~---~~~~~  317 (409)
T TIGR00540       247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCD---DHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKP---EDNEK  317 (409)
T ss_pred             HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCC---CChHH
Confidence            4445566677    46777777777776665   7899999999999999998765311   2222211110   11356


Q ss_pred             HHHHHHHHHHhcCCCc--hhchHHHHHHHhcChhhHHHHHHHHH--HHHhccCCChhHHHHHHHHHHHh
Q 014516          194 ESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLDELKKSR--NWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       194 EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~--k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      -+..++++++.+|.|.  ..-..-+|+.-+.+.  |.+..++.+  ..+..+|++..+. +...++.++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~  383 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDANDLA-MAADAFDQA  383 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHc
Confidence            6889999999999999  777778999877655  899999999  6888999887765 666676664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.71  E-value=1.4  Score=45.32  Aligned_cols=162  Identities=12%  Similarity=0.049  Sum_probs=118.1

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh---ccCh
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR---NCST  186 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~---~~~~  186 (423)
                      ...+++...|-.+|.+++.+..+-..|+.++-...   ............|+..|..+..=.-++-+ .++..   .+.+
T Consensus       183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~---~~~ka~~hf~qal~ldpdh~~sk~~~~~~-k~le~~k~~gN~  258 (486)
T KOG0550|consen  183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND---NADKAINHFQQALRLDPDHQKSKSASMMP-KKLEVKKERGND  258 (486)
T ss_pred             ccchhHHHHHHHHHhcccchhHHHHhccccccccc---chHHHHHHHhhhhccChhhhhHHhHhhhH-HHHHHHHhhhhh
Confidence            35688999999999999999999999999998764   67888888999999888877654433321 11110   0000


Q ss_pred             --hHHhHHHHHHHHHHHHHhcCCCc----hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516          187 --LQWIIERESELVEKIAERSKMNY----RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE  260 (423)
Q Consensus       187 --~~~~~~~EL~~~~~~l~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~  260 (423)
                        ...-+...-++...+|..||.|-    +....|.-+..++++  ..+.+..|+..+++|++-.-|.+-|...-.-+  
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~l--  334 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLAL--  334 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH--
Confidence              01235677789999999999864    456667777777766  78899999999999999888877666543322  


Q ss_pred             cccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          261 GFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                                        .-|++.+++.++++...-+
T Consensus       335 ------------------e~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  335 ------------------EKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ------------------HHHHHHHHHHHHHHhhccc
Confidence                              3588888888888865433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.49  E-value=14  Score=38.10  Aligned_cols=161  Identities=9%  Similarity=-0.029  Sum_probs=97.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhH-HHHHHH----HHh-hhcc
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWS-HRRWVI----NMI-SRNC  184 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~-hRrwll----~~l-~~~~  184 (423)
                      ..+.+++..+.++..+|+|..+......+....+   +.++.+.++..+.+..+.+..... .++...    ... ...+
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g---dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~  244 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG---AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG  244 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3466777777778888888777777776666554   667777777777766655444333 111221    100 0000


Q ss_pred             ----------------Ch------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHH-HHHhcChhhHHHHHHHHH
Q 014516          185 ----------------ST------------LQWIIERESELVEKIAERSKMNYRAWNHRCW-LVSFMTREQVLDELKKSR  235 (423)
Q Consensus       185 ----------------~~------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~w-ll~~~~~~~~~~EL~~~~  235 (423)
                                      .+            .....+.....+.++++..|      +.+-. +...+......+.++.++
T Consensus       245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------~~~l~~l~~~l~~~~~~~al~~~e  318 (398)
T PRK10747        245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------DERLVLLIPRLKTNNPEQLEKVLR  318 (398)
T ss_pred             HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CHHHHHHHhhccCCChHHHHHHHH
Confidence                            00            00113455566666666333      23322 222232345677899999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          236 NWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       236 k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                      +|++.||.|.........+..+.                    ..|.+..++...++...|++..
T Consensus       319 ~~lk~~P~~~~l~l~lgrl~~~~--------------------~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        319 QQIKQHGDTPLLWSTLGQLLMKH--------------------GEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCCHHH
Confidence            99999999988766666665542                    2478888999999999999765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=91.41  E-value=3.7  Score=46.61  Aligned_cols=133  Identities=10%  Similarity=-0.001  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ...++.+.-.+|.++|....+|-+-+.+.....   +..++..++.++...+|-.+++|.+---..-...        -|
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~---Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~w  542 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD---DMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TW  542 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cH
Confidence            567888888999999999999999998887653   6788999999999999999999988765544332        27


Q ss_pred             HHHHHHHHHHHHhcCCCc--hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          192 ERESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      +..+.+|.++.+..|.--  ..|.||+-.  .+........+......+..||.|+-+|.-.+.....
T Consensus       543 e~a~~I~l~~~qka~a~~~k~nW~~rG~y--yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~  608 (1238)
T KOG1127|consen  543 EEAFEICLRAAQKAPAFACKENWVQRGPY--YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE  608 (1238)
T ss_pred             HHHHHHHHHHhhhchHHHHHhhhhhcccc--ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence            788888999999998765  455554432  2333346677888899999999999999988776654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.95  E-value=3.1  Score=38.33  Aligned_cols=105  Identities=6%  Similarity=-0.009  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT--------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF  262 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~  262 (423)
                      ++...+-.+.....||.+..+++.-+-.+..+.        ..++++.+...+..|.+||..+.|....+-.+..+-...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            567777888889999999999988777765542        146788899999999999999998888877766542210


Q ss_pred             cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                               ....+....++...+|..++...+|+|+.-+.-
T Consensus        87 ---------~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   87 ---------PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             ---------CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                     012345678999999999999999999975443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=90.92  E-value=0.74  Score=34.19  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      .+.+++..+..++..+|++..++.....++.+.+.        +++...++.+++..+|.|-.+|
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCHHHHH
Confidence            68999999999999999999999998888887766        7899999999999999874443

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=90.90  E-value=7.9  Score=44.17  Aligned_cols=174  Identities=9%  Similarity=-0.039  Sum_probs=102.9

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------------------hHh
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------------------QAW  170 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------------------~~W  170 (423)
                      ...+++++..+..+..+|+...+|.+-+.+..+.+   .+.+....  .++...++..                   .+-
T Consensus        45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRR---PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc---chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence            44688999999999999999999999999666553   22332222  4444333332                   444


Q ss_pred             HHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH--------------------
Q 014516          171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE--------------------  230 (423)
Q Consensus       171 ~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E--------------------  230 (423)
                      .....++.+++.        ..+..+..+++++.||.|..|=++=...+...   ++++.                    
T Consensus       120 ~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~---dL~KA~~m~~KAV~~~i~~kq~~~~  188 (906)
T PRK14720        120 RTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEE---DKEKAITYLKKAIYRFIKKKQYVGI  188 (906)
T ss_pred             HHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhhcchHH
Confidence            444444444443        57888999999999999999999887777654   23444                    


Q ss_pred             HHHHHHHHhccCCChhHHH-HHHHHHHHhhhcccccC-CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516          231 LKKSRNWSGLHVADNSCFH-YRRRLMLRNLEGFCYTQ-DNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL  301 (423)
Q Consensus       231 L~~~~k~i~~d~~N~SaW~-yR~~Ll~~l~~~~~~~~-~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa  301 (423)
                      ++.-.+.|..+|.|+.-+- ..+.++..+...+.... -+-.  ........|++-+.+.+.+++.+|.|.=+
T Consensus       189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~--~~y~~~~~~~~~i~iLK~iL~~~~~n~~a  259 (906)
T PRK14720        189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY--EPYKALEDWDEVIYILKKILEHDNKNNKA  259 (906)
T ss_pred             HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH--HHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence            4444455555555554322 22222222110000000 0000  00011234667788889999999997765

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=90.70  E-value=1.3  Score=34.74  Aligned_cols=78  Identities=12%  Similarity=0.018  Sum_probs=62.4

Q ss_pred             chHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          111 LAIEVMIHSKALLLLSCD--FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe--~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      ..++++..+++++..+|.  +..+|.....++...+   .+.+++.+++. +..+|++..+.....-++..++.      
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~------   73 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK------   73 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-------
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC------
Confidence            357888999999999994  6778888999998876   79999999999 88899887777777777777766      


Q ss_pred             HhHHHHHHHHHH
Q 014516          189 WIIERESELVEK  200 (423)
Q Consensus       189 ~~~~~EL~~~~~  200 (423)
                        +++.+...++
T Consensus        74 --y~eAi~~l~~   83 (84)
T PF12895_consen   74 --YEEAIKALEK   83 (84)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --HHHHHHHHhc
Confidence              6677776654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.11  E-value=2.6  Score=39.65  Aligned_cols=91  Identities=15%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             cchHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc
Q 014516          110 TLAIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC  184 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~  184 (423)
                      ....++...+..+|.++|...|     ....|.-++..+   ...+.++.-+++++..+|-+-.+--.|..+..++..  
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl---~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek--  183 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL---RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK--  183 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh---hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh--
Confidence            4568899999999999999987     223344444444   367889999999999999988888888888888754  


Q ss_pred             ChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          185 STLQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                            +++.++-+.++++.+|++-.|
T Consensus       184 ------~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  184 ------YEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             ------HHHHHHHHHHHHHhCcchHHH
Confidence                  789999999999999998633

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=90.10  E-value=29  Score=39.90  Aligned_cols=134  Identities=14%  Similarity=0.068  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      -.+++|+.+.++|..||++|.||-+-+..+-+++  .+++++-+-.-.+....|++--+|.+-.-+.++.....     .
T Consensus        17 ~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~--q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl-----~   89 (1238)
T KOG1127|consen   17 EYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG--QDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDIL-----D   89 (1238)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc--CCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhh-----h
Confidence            3589999999999999999999999999999987  56899999999999999999999998777766522110     0


Q ss_pred             HHHHHHHH---------------HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          191 IERESELV---------------EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       191 ~~~EL~~~---------------~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      +.+-..++               +...+.+|+.|+...--- ++   .. .+-+-+..-.+..+.|++-+-+|.-...+.
T Consensus        90 ld~~~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hl-l~---a~-eigei~~trq~~se~N~~k~~a~~rl~Qi~  164 (1238)
T KOG1127|consen   90 LDRAAKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHL-LV---AK-EIGEIAVTRQDASEKNPKKFWAFCRLGQIQ  164 (1238)
T ss_pred             hhHhHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHH-Hh---hH-HHHHHHhchHhhhhhCHHHHHhhCchHHHH
Confidence            22222333               334444555554442211 11   11 111222233366667777777777666665


Q ss_pred             H
Q 014516          256 L  256 (423)
Q Consensus       256 ~  256 (423)
                      .
T Consensus       165 l  165 (1238)
T KOG1127|consen  165 L  165 (1238)
T ss_pred             h
Confidence            4

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.49  E-value=0.44  Score=31.29  Aligned_cols=26  Identities=23%  Similarity=0.161  Sum_probs=20.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHccC
Q 014516          119 SKALLLLSCDFATAWNSRKLIVSNKR  144 (423)
Q Consensus       119 t~~lLl~nPe~~TaWn~Rk~lL~~~~  144 (423)
                      ++++|.+||++..+|+..+.++...+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g   27 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG   27 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence            46778888888888888888887765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=89.26  E-value=3.3  Score=38.19  Aligned_cols=96  Identities=10%  Similarity=-0.024  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-
Q 014516          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-  185 (423)
Q Consensus       114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-  185 (423)
                      .+.+.++.....||.+..+++.=+-.|..+.       ....+++++.-++.+|+++|+...+-..=.-.+..+....+ 
T Consensus         9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d   88 (186)
T PF06552_consen    9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD   88 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence            3455667778999999999998888777652       12347788888999999999986665555555544443222 


Q ss_pred             --hhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          186 --TLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       186 --~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                        .....++....+..++.+.+|.|-
T Consensus        89 ~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   89 TAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence              234567778888888888888764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=89.01  E-value=10  Score=41.79  Aligned_cols=114  Identities=9%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      +|.....|-.++.++...   ..++.+.++.+..-.+        .+|-|-...+.+      ..+++.....+..++.+
T Consensus       453 k~~d~~lyc~LGDv~~d~---s~yEkawElsn~~sar--------A~r~~~~~~~~~------~~fs~~~~hle~sl~~n  515 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDP---SLYEKAWELSNYISAR--------AQRSLALLILSN------KDFSEADKHLERSLEIN  515 (777)
T ss_pred             CCCcchhHHHhhhhccCh---HHHHHHHHHhhhhhHH--------HHHhhccccccc------hhHHHHHHHHHHHhhcC
Confidence            677777777777777554   2455566655544333        333332222211      12566677777777888


Q ss_pred             CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      |--...|.-++.+-=++.+  ++...+++......+|.|+-+|+......-++
T Consensus       516 plq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  516 PLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             ccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence            8777888777776655543  66677777777778888888887776655554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.75  E-value=38  Score=36.49  Aligned_cols=212  Identities=10%  Similarity=0.004  Sum_probs=126.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      .-.+.++.|+.++.++|=|.++.-.+=-++-.++   .-.+=+.+.-.+...+|+++-.|.-=+--.-.+++        
T Consensus       259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~---~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k--------  327 (611)
T KOG1173|consen  259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELG---KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK--------  327 (611)
T ss_pred             hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------
Confidence            4467788999999999999998888777777665   33455666667778888888888765554444443        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh--------------------------------hhHHHHHHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------------------------EQVLDELKKSRNWS  238 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------------------------~~~~~EL~~~~k~i  238 (423)
                      ..++-.+..|+...||..-.||-.=+-.+...+.                                ...+-.=.+.....
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~  407 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL  407 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3566667777777777777777554444322210                                01222335566666


Q ss_pred             hccCCChhHHHHHHHHHHHhhhcc---------------cccCCC--CC----CCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          239 GLHVADNSCFHYRRRLMLRNLEGF---------------CYTQDN--NS----SGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       239 ~~d~~N~SaW~yR~~Ll~~l~~~~---------------~~~~~~--~~----~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                      ...|+|-=.-|+.+.|......-.               ..+..+  .+    -|........+++.+.+.+++|.+.|.
T Consensus       408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            677777666655554433211000               000000  00    011112345678889999999999998


Q ss_pred             CccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccch
Q 014516          298 REALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADAN  359 (423)
Q Consensus       298 neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~  359 (423)
                      |-+.-.-..++... ++.                         ++.=++..+.++..+|++.
T Consensus       488 ~~~~~asig~iy~l-lgn-------------------------ld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  488 DASTHASIGYIYHL-LGN-------------------------LDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             chhHHHHHHHHHHH-hcC-------------------------hHHHHHHHHHHHhcCCccH
Confidence            87766554444321 111                         2334556677888888873

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=87.93  E-value=2.9  Score=32.68  Aligned_cols=79  Identities=10%  Similarity=0.022  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHHHHhCCC--chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516          147 PILMDELHLSALVLSYSPK--SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK--~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (423)
                      ..+++++.+++.++...|.  +..+|.....++.+.+.        +.+.+.++.+ .+.+|+|..+....+-++-.++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            3678889999999998885  46677777888777765        6788888888 88888886666666666666654


Q ss_pred             hhHHHHHHHHHH
Q 014516          225 EQVLDELKKSRN  236 (423)
Q Consensus       225 ~~~~~EL~~~~k  236 (423)
                        +++.++..++
T Consensus        74 --y~eAi~~l~~   83 (84)
T PF12895_consen   74 --YEEAIKALEK   83 (84)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --HHHHHHHHhc
Confidence              6666665544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.79  E-value=1.1  Score=28.54  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=28.4

Q ss_pred             hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      .+|..+..+...++.        +...+..+.++++.+|.|
T Consensus         2 ~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGD--------YEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCC--------chHHHHHHHHHHHHCcCC
Confidence            578999998888776        789999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=87.60  E-value=14  Score=36.07  Aligned_cols=90  Identities=6%  Similarity=-0.144  Sum_probs=72.2

Q ss_pred             CHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC---CchhchHHHHHHHh
Q 014516          148 ILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVSF  221 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~~  221 (423)
                      .+.+.+..+..++..+|++   +.++.....+....+.        +.+.+....+++..+|.   ...||...+.+...
T Consensus       158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~  229 (263)
T PRK10803        158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD  229 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence            6899999999999999999   4677767666665544        68888999999988776   57777777777766


Q ss_pred             cChhhHHHHHHHHHHHHhccCCChhH
Q 014516          222 MTREQVLDELKKSRNWSGLHVADNSC  247 (423)
Q Consensus       222 ~~~~~~~~EL~~~~k~i~~d~~N~Sa  247 (423)
                      ++.  .......+++.++.+|....+
T Consensus       230 ~g~--~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        230 KGD--TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             cCC--HHHHHHHHHHHHHHCcCCHHH
Confidence            654  788899999999999877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.60  E-value=0.46  Score=31.21  Aligned_cols=27  Identities=22%  Similarity=0.060  Sum_probs=20.5

Q ss_pred             HHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516          198 VEKIAERSKMNYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (423)
                      +.++++.+|.|..+|+..++++...+.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~   28 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGD   28 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence            567888888888888888887776553

>PRK15331 chaperone protein SicA; Provisional

Probab=87.47  E-value=10  Score=34.50  Aligned_cols=105  Identities=10%  Similarity=0.039  Sum_probs=87.8

Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCH
Q 014516           70 KLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPIL  149 (423)
Q Consensus        70 ~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~  149 (423)
                      -.||+...+-.+|..|...|.+                  ...+++.....-+...+|-+...|.-=.-+.+..+   .+
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~------------------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k---~y   87 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQ------------------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK---QF   87 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH---HH
Confidence            3488899999999999877644                  23478889999999999999999988888888774   79


Q ss_pred             HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516          150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (423)
Q Consensus       150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (423)
                      ++++.+........+++|..-.|-..+...+++        ......+...+++
T Consensus        88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~--------~~~A~~~f~~a~~  133 (165)
T PRK15331         88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK--------AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHcccCCCCccchHHHHHHHhCC--------HHHHHHHHHHHHh
Confidence            999999999999999999999999999988876        3566666666666

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=87.23  E-value=37  Score=36.50  Aligned_cols=145  Identities=10%  Similarity=0.046  Sum_probs=87.2

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC--CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhh-----
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR--LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISR-----  182 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~--~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~-----  182 (423)
                      ...+++...+..+|..||++++-...-..++....  .....+.-+.+.+.+...+|++..+   ||..|..+..     
T Consensus        52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~rl~L~~~~g~~F~~  128 (517)
T PF12569_consen   52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP---RRLPLDFLEGDEFKE  128 (517)
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch---hHhhcccCCHHHHHH
Confidence            45678888999999999999887665555441110  0124566688888888888887544   3332221110     


Q ss_pred             -----------cc-C----hhHHhHHHH--HHHHHHHHHh-------------------cCCCchhc--hHHHHHHHhcC
Q 014516          183 -----------NC-S----TLQWIIERE--SELVEKIAER-------------------SKMNYRAW--NHRCWLVSFMT  223 (423)
Q Consensus       183 -----------~~-~----~~~~~~~~E--L~~~~~~l~~-------------------~pkNY~AW--~hR~wll~~~~  223 (423)
                                 .+ +    ++..++.+.  ..++..++..                   .|.....|  .+......+++
T Consensus       129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g  208 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG  208 (517)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence                       00 0    111111110  1122222111                   22333334  55566666665


Q ss_pred             hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516          224 REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL  259 (423)
Q Consensus       224 ~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~  259 (423)
                      .  +.+.|+++++.|+..|...-...-+.-++.+..
T Consensus       209 ~--~~~Al~~Id~aI~htPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  209 D--YEKALEYIDKAIEHTPTLVELYMTKARILKHAG  242 (517)
T ss_pred             C--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence            4  889999999999999999999999999888863

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=86.83  E-value=26  Score=36.49  Aligned_cols=124  Identities=13%  Similarity=0.048  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ..++...+++++.+||...++-.-=.-+|...+   .+++-=.+...++.+.--...-|.--..   .+..     .+-+
T Consensus       248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg---~~e~~~~L~~~Lf~~~~~ta~~wfV~~~---~l~~-----~K~~  316 (564)
T KOG1174|consen  248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG---GCEQDSALMDYLFAKVKYTASHWFVHAQ---LLYD-----EKKF  316 (564)
T ss_pred             chHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc---CHhhHHHHHHHHHhhhhcchhhhhhhhh---hhhh-----hhhH
Confidence            466777888999999999998887777777765   6677777777777755322222321111   1111     1337


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF  248 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW  248 (423)
                      +..|.+++++++.+|+|-.|.--++-++.++++  .+...-.+...+.+-|.+-.++
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--~~~A~IaFR~Aq~Lap~rL~~Y  371 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRLLIALER--HTQAVIAFRTAQMLAPYRLEIY  371 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHHHHhccc--hHHHHHHHHHHHhcchhhHHHH
Confidence            899999999999999999999999999988876  4666666677777777666553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.77  E-value=3.8  Score=42.33  Aligned_cols=122  Identities=12%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHcc---C----CcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLI--VSNK---R----LLPILMDELHLSALVLSYSPKSE----QAWSHRRWVIN  178 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~l--L~~~---~----~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~  178 (423)
                      .+.++....+.|.++|+|+++-..++.+  |...   +    ....+..+-+..+..|.++|.+-    .++..|.-+..
T Consensus       219 ~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~  298 (486)
T KOG0550|consen  219 ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI  298 (486)
T ss_pred             hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence            3667788999999999999876654432  1111   0    12468889999999999999874    44556776666


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~  243 (423)
                      +++.        +.+.+.-|+.++.+||.--.|..-|.-+.--+  ..|++.++.+++.+...-+
T Consensus       299 rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~l--e~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  299 RLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLAL--EKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccc
Confidence            6665        68899999999999997766666666554434  4589999999999887655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=86.55  E-value=13  Score=38.45  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+.+++..+.+...+|+....   =-+++...+   .-.++++++...|+.+|.++.+.+--.-.+.+..+        .
T Consensus       185 ~~~ai~lle~L~~~~pev~~~---LA~v~l~~~---~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--------~  250 (395)
T PF09295_consen  185 YDEAIELLEKLRERDPEVAVL---LARVYLLMN---EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--------Y  250 (395)
T ss_pred             HHHHHHHHHHHHhcCCcHHHH---HHHHHHhcC---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--------H
Confidence            345555556655555553221   122222221   23455666666666666665555543333222222        3


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHH
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELK  232 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~  232 (423)
                      +.++.+..++.+..|.++.+|.+-.-+.-.++.  ++.+|.
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALl  289 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALL  289 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHH
Confidence            555666666666666666666664444433332  444443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.01  E-value=2.1  Score=27.02  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=28.9

Q ss_pred             hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       167 y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      +.+|.+...+....+.        +.+.+..+.++++.+|+|
T Consensus         1 a~~~~~lg~~~~~~~~--------~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGN--------YEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHCcCC
Confidence            3578899998888776        789999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.55  E-value=27  Score=34.61  Aligned_cols=127  Identities=10%  Similarity=-0.019  Sum_probs=99.5

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      +..+..+...+.-|..||++..-|-.=+++....+   ....++.-+...++..|+++.+|--=..++-.-...     .
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-----~  207 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALG---RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-----Q  207 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----c
Confidence            34567778889999999999999999999888876   789999999999999999999998766665543321     2


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS  246 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S  246 (423)
                      +-.+.-.+..+++..||.|-.+=++=.+-...-  ..+.+.+..-..+++..|-|-.
T Consensus       208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~--g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         208 MTAKARALLRQALALDPANIRALSLLAFAAFEQ--GDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCCCc
Confidence            234556789999999999998877755544333  3478888888888888877653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=84.32  E-value=3.1  Score=28.49  Aligned_cols=38  Identities=18%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516          132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH  172 (423)
Q Consensus       132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h  172 (423)
                      +|....+.....+   .++++...+..++..+|++..+|..
T Consensus         3 ~~~~la~~~~~~G---~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLG---QPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            5666677777765   7899999999999999999999864

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=83.69  E-value=33  Score=37.00  Aligned_cols=164  Identities=8%  Similarity=-0.058  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH------------------------------
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS------------------------------  161 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~------------------------------  161 (423)
                      .+++-+...++-.+||.+..||-.=+-.+...+   ..++++.....+-+                              
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~---EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG---EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK  404 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc---hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence            366667777777788888888877666554332   33444444444444                              


Q ss_pred             ----hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516          162 ----YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW  237 (423)
Q Consensus       162 ----~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~  237 (423)
                          ++|..+-+-|.-+-+.-+..... .....++..+..+...+...++=-..|+.-+.+.++++.  +++.+.+..+.
T Consensus       405 ~A~ai~P~Dplv~~Elgvvay~~~~y~-~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~--~~eAI~~~q~a  481 (611)
T KOG1173|consen  405 QALAIAPSDPLVLHELGVVAYTYEEYP-EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK--YEEAIDYYQKA  481 (611)
T ss_pred             HHHhcCCCcchhhhhhhheeehHhhhH-HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh--HHHHHHHHHHH
Confidence                44444444333332222111100 011223444444444444444333345555555555544  78899999999


Q ss_pred             HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccH
Q 014516          238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREAL  301 (423)
Q Consensus       238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSa  301 (423)
                      +.+.|.|-+...--+++-..+ +                   .++.++++.++++-++|.|..+
T Consensus       482 L~l~~k~~~~~asig~iy~ll-g-------------------nld~Aid~fhKaL~l~p~n~~~  525 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLL-G-------------------NLDKAIDHFHKALALKPDNIFI  525 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHh-c-------------------ChHHHHHHHHHHHhcCCccHHH
Confidence            999999998887777765543 1                   3678999999999999999765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.67  E-value=3.3  Score=26.29  Aligned_cols=33  Identities=12%  Similarity=0.036  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS  166 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~  166 (423)
                      .+|..++.+....+   .+++.+..+..+|+.+|++
T Consensus         2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence            57889999888875   7999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=81.12  E-value=95  Score=34.40  Aligned_cols=132  Identities=8%  Similarity=-0.051  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH-------------HH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNS-RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW-------------VI  177 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~-Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw-------------ll  177 (423)
                      .++......+++...|+---.|-. =+.--.. +   +...+..++..++..||.|-.+|-.---             ++
T Consensus       566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~a-g---dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll  641 (913)
T KOG0495|consen  566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKA-G---DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL  641 (913)
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-C---CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence            466777888999999999888874 2222223 2   6788999999999999999999965322             22


Q ss_pred             HHhhhc-cC-----------hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          178 NMISRN-CS-----------TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       178 ~~l~~~-~~-----------~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      .+.... ++           -..+..++++.+|+.+++.+|...-.|--.+.+..+++.  .+..-+.+..-++.-|.-.
T Consensus       642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~--ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN--IEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH--HHHHHHHHHhccccCCCCc
Confidence            222111 11           023456889999999999999988888888888887754  3333344444445555555


Q ss_pred             hHHH
Q 014516          246 SCFH  249 (423)
Q Consensus       246 SaW~  249 (423)
                      --|-
T Consensus       720 pLWl  723 (913)
T KOG0495|consen  720 PLWL  723 (913)
T ss_pred             hHHH
Confidence            5554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=80.31  E-value=17  Score=37.50  Aligned_cols=87  Identities=13%  Similarity=0.001  Sum_probs=64.9

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      .....++...+++|.+.|.|.-|..-|++++..++   .++.+...+.+++...|.|-.+=+--.-+-++...       
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~-------  340 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE-------  340 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-------
Confidence            34568999999999999999999999999998886   78999999999999999986654333333333322       


Q ss_pred             hHHHHHHHHHHHHHhcC
Q 014516          190 IIERESELVEKIAERSK  206 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~p  206 (423)
                      ..+.|-++..+|+..-+
T Consensus       341 ~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  341 YEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            24566677777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	423
1jcq_A	382	Crystal Structure Of Human Protein Farnesyltransfer		6e-05
2f0y_A	379	Crystal Structure Of Human Protein Farnesyltransfer		6e-05
1o1r_A	380	Structure Of Fpt Bound To Ggpp Length = 380		9e-05
1o5m_A	377	Structure Of Fpt Bound To The Inhibitor Sch66336 Le		1e-04
1qbq_A	333	Structure Of Rat Farnesyl Protein Transferase Compl		1e-04
2r2l_A	315	Structure Of Farnesyl Protein Transferase Bound To		1e-04
3pz4_A	379	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		1e-04
2bed_A	313	Structure Of Fpt Bound To Inhibitor Sch207736 Lengt		1e-04
1nl4_A	312	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-04
1n95_A	315	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		1e-04
1ft1_A	377	Crystal Structure Of Protein Farnesyltransferase At		2e-04
1ft2_A	315	Co-Crystal Structure Of Protein Farnesyltransferase		2e-04
3c72_A	334	Engineered Rabggtase In Complex With A Peptidomimet		7e-04
3pz1_A	332	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		7e-04
3dss_A	331	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		7e-04
4ehm_A	330	Rabggtase In Complex With Covalently Bound Psoromic		8e-04

>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E++    ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
             +E E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGF 262
            ++ +R  ++ N  G+
Sbjct: 236 VWN-QRYFVISNTTGY 250

>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E++    ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
             +E E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGF 262
            ++ +R  ++ N  G+
Sbjct: 236 VWN-QRYFVISNTTGY 250

>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L++I
Sbjct: 135 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 192
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
            +        I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 193 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 238
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 239 VWN-QRHFVISNTTGYS 254

>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
            +        I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 236 VWN-QRHFVISNTTGYS 251

>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L++I
Sbjct: 88  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 145
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
            +        I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 146 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 191
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 192 VWN-QRHFVISNTTGYS 207

>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L   
Sbjct: 79  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
                E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 182
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 183 VWN-QRHFVISNTTGYS 198

>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L++I
Sbjct: 134 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 191
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
            +        I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 192 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 237
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 238 VWN-QRHFVISNTTGYS 253

>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L   
Sbjct: 79  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
                E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 182
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 183 VWN-QRHFVISNTTGYS 198

>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
                E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 181
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 182 VWN-QRHFVISNTTGYS 197

>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
                E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 181
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 182 VWN-QRHFVISNTTGYS 197

>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
            +        I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 235
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 236 VWN-QRHFVISNTTGYS 251

>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E++    ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVS----FMTREQVLDELKKSRNWSGLHVADNS 246
                E +  I  +   NY AW HR W++     +    Q +D+L K        V +NS
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKE------DVRNNS 181
Query: 247 CFHYRRRLMLRNLEGFC 263
            ++ +R  ++ N  G+ 
Sbjct: 182 VWN-QRHFVISNTTGYS 197

>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic Inhibitor Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
           K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL    
Sbjct: 42  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 101
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
             L  +PKS   W HR W+++ +        W   RE EL  +  E  + N+  W++R
Sbjct: 102 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 153

>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 332

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
           K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL    
Sbjct: 40  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 99
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
             L  +PKS   W HR W+++ +        W   RE EL  +  E  + N+  W++R
Sbjct: 100 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 151

>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) Length = 331

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
           K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL    
Sbjct: 39  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 98
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
             L  +PKS   W HR W+++ +        W   RE EL  +  E  + N+  W++R
Sbjct: 99  SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 150

>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSA 157
           K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL    
Sbjct: 38  KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
             L  +PKS   W HR W+++ +        W   RE EL  +  E  + N+  W++R
Sbjct: 98  SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	5e-35
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	6e-32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	1e-29
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-26
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  138 bits (348), Expect = 5e-36
 Identities = 59/328 (17%), Positives = 115/328 (35%), Gaps = 27/328 (8%)

Query: 102 FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELH 154
              K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL 
Sbjct: 35  VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELG 94

Query: 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214
                L  +PKS   W HR W+++ +            RE EL  +  E  + N+  W++
Sbjct: 95  FLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDY 148

Query: 215 RCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYF 274
           R ++ +        +EL  + +    + ++ S +HYR  L+ +           +S    
Sbjct: 149 RRFVAAQAAVAP-AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP------QPDSGPQG 201

Query: 275 VETYQIWKEELDWNESLIKQYVGREALWLHRRFL-------SMYLIKHMATHLLAVSCQS 327
                +  +EL+  ++        ++ W + R+L        +    H++     +S   
Sbjct: 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCF 261

Query: 328 KPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDI 387
               +V   + +L+        S      D     +           L  Q+P++    I
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVI 321

Query: 388 QEKLRAGVGDVTRMLKRSCPDRSSLWDY 415
                +    V    +  C  R S  D 
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDE 349

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331

 Score =  131 bits (330), Expect = 5e-35
 Identities = 49/283 (17%), Positives = 103/283 (36%), Gaps = 25/283 (8%)

Query: 102 FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELH 154
              K Q   L   V+  +  +L  + DFAT WN R+ ++       S +    ++  EL 
Sbjct: 36  VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELG 95

Query: 155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214
                L  +PKS   W HR W+++ +            RE EL  +  E  + N+  W++
Sbjct: 96  FLESCLRVNPKSYGTWHHRCWLLSRLPEPN------WARELELCARFLEADERNFHCWDY 149

Query: 215 RCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYF 274
           R ++ +        +EL  + +    + ++ S +HYR  L+ +           +S    
Sbjct: 150 RRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP------QPDSGPQG 202

Query: 275 VETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVD 334
                +  +EL+  ++        ++ W + R+L           +   +       S  
Sbjct: 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262

Query: 335 IDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTK 377
              +   +++ CL+     TI          ++    + + + 
Sbjct: 263 ELQELEPENKWCLL-----TIILLMRALDPLLYEKETLQYFST 300

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score =  122 bits (307), Expect = 6e-32
 Identities = 37/195 (18%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173
             +  ++  +       T W  R  I+ N      L DEL     +   + K+ Q W++R
Sbjct: 51  RALHITELGINELASHYTIWIYRFNILKNLPNRN-LYDELDWCEEIALDNEKNYQIWNYR 109

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK 233
           + +I  I    +   +   RE +++E +      N+  W++R WLV          EL  
Sbjct: 110 QLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF 168

Query: 234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIK 293
                   + +NS + +R  L+               S   + T     EEL++ +  I 
Sbjct: 169 VDKVIDTDLKNNSAWSHRFFLL--------------FSKKHLATDNTIDEELNYVKDKIV 214

Query: 294 QYVGREALWLHRRFL 308
           +     + W +   +
Sbjct: 215 KCPQNPSTWNYLLGI 229

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score =  116 bits (292), Expect = 1e-29
 Identities = 48/309 (15%), Positives = 97/309 (31%), Gaps = 43/309 (13%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173
             +  ++ ++ ++    T W  R  ++++  L   L DEL L       + KS Q W HR
Sbjct: 72  RALELTEIIVRMNPAHYTVWQYRFSLLTS--LNKSLEDELRLMNEFAVQNLKSYQVWHHR 129

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM------TREQV 227
             +++ IS            E E +         NY  W +  WL S        +  Q 
Sbjct: 130 LLLLDRISPQD------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183

Query: 228 LDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDW 287
             EL        +   +NS + +R  L +                    + +  ++EL +
Sbjct: 184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE-------------TSSRSLQDELIY 230

Query: 288 NESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCL 347
               I       + W + R    +    +   L A+               S ++ ++  
Sbjct: 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAIL----------PYTASKLNPDIET 280

Query: 348 VHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCP 407
           V +    +      E   +     + +L     E   +D   K+        ++      
Sbjct: 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKV------FEKLSSEYDQ 334

Query: 408 DRSSLWDYL 416
            R+  W++ 
Sbjct: 335 MRAGYWEFR 343

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  107 bits (267), Expect = 8e-26
 Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 26/195 (13%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR 173
                ++  + L+    T W+ R++++ +  L   L +E++    ++   PK+ Q W HR
Sbjct: 115 RAFKLTRDAIELNAANYTVWHFRRVLLKS--LQKDLHEEMNYITAIIEEQPKNYQVWHHR 172

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK 233
           R ++  +            +E E +  I  +   NY AW HR W++     +   +EL+ 
Sbjct: 173 RVLVEWLRDP--------SQELEFIADILNQDAKNYHAWQHRQWVIQEF--KLWDNELQY 222

Query: 234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIK 293
                   V +NS ++ R  + + N  G+                 + + E+ +   +IK
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFV-ISNTTGYNDR-------------AVLEREVQYTLEMIK 268

Query: 294 QYVGREALWLHRRFL 308
                E+ W + + +
Sbjct: 269 LVPHNESAWNYLKGI 283

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 48/218 (22%)

Query: 122 LLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVIN--- 178
           ++         W+ R+++V     L     EL   A +L+   K+  AW HR+WVI    
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEW---LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 214

Query: 179 -----------MISRNCS------------------TLQWIIERESELVEKIAERSKMNY 209
                      ++  +                      + ++ERE +   ++ +    N 
Sbjct: 215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274

Query: 210 RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN 269
            AWN+   ++      +  + L +  +        +S  +    L+    +      DN 
Sbjct: 275 SAWNYLKGILQDRGLSKYPNLLNQLLDLQ----PSHSSPYLIAFLVDIYEDMLENQCDNK 330

Query: 270 SSGYFVETYQIWKEELDWNESLIKQY-VGREALWLHRR 306
                     I  + L+  E L K+    R+  W +  
Sbjct: 331 E--------DILNKALELCEILAKEKDTIRKEYWRYIG 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 56/355 (15%), Positives = 106/355 (29%), Gaps = 129/355 (36%)

Query: 1   MSTRENSYTEAEALNLLAQLERILDLDP--LIDEVGFIHPSQFATLKEEIGDSLSSEDRD 58
           +     + T  E  +LL    + LD  P  L  EV   +P + +     I +S+    RD
Sbjct: 291 LDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSI----IAESI----RD 339

Query: 59  HESTS-FWIR------DHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTL 111
             +T   W           +  S  +L P             R+      F      D L
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAE----------YRKM-----F------DRL 378

Query: 112 AI---EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALV--------- 159
           ++      I +  L L+       W         K  + +++++LH  +LV         
Sbjct: 379 SVFPPSAHIPTILLSLI-------WFD-----VIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 160 ------LSYSPKSEQAWS-HRRWVINMISRNCSTLQWIIE----------------RESE 196
                 L    K E  ++ HR  +++  +   +     +                 +  E
Sbjct: 427 SIPSIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 197 LVEKIAERSK--MNYR-----------AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA 243
             E++       +++R           AWN    +++       L +LK  +     ++ 
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------TLQQLKFYKP----YIC 535

Query: 244 DNSCFHYRRRL-----MLRNLEGFCYTQD----------NNSSGYFVETY-QIWK 282
           DN    Y R +      L  +E                       F E + Q+ +
Sbjct: 536 DN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	100.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.83
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.07
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.03
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.01
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.01
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.0
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.87
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.8
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.74
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.72
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.7
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.7
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.7
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.69
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.69
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.69
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.66
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.63
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.6
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.58
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.55
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.53
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.45
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.31
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.3
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.3
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.27
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.27
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.19
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.02
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.99
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.96
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.96
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.95
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.93
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.89
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.83
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.8
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.78
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.75
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.69
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.56
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.52
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.51
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.43
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.16
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.14
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.99
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.87
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.74
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.7
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.7
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.63
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.59
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.35
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.25
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.06
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.95
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.13
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.98
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.98
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	93.75
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	93.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	92.92
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.64
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	91.56
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	90.27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	90.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	89.35
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	88.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	88.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	88.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	87.35
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	86.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	84.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	81.43
1pc2_A	152	Mitochondria fission protein; unknown function; NM	80.75
1pc2_A	152	Mitochondria fission protein; unknown function; NM	80.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	80.12

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=2.4e-50  Score=398.25  Aligned_cols=281  Identities=18%  Similarity=0.195  Sum_probs=224.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHH
Q 014516           74 STQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDEL  153 (423)
Q Consensus        74 ~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL  153 (423)
                      -.......|+.+...|+..++             .+++++++|++|+++|.+||+||||||+||.+|..++ ...+++||
T Consensus        24 ~~i~y~~~y~~~~~~~~a~~~-------------~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~~~~~eeL   89 (306)
T 3dra_A           24 CQILYDEDYKQIMGLLLALMK-------------AEEYSERALHITELGINELASHYTIWIYRFNILKNLP-NRNLYDEL   89 (306)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-TSCHHHHH
T ss_pred             eeeeeCHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-cccHHHHH
Confidence            344556789999999999877             4688999999999999999999999999999999874 14899999


Q ss_pred             HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHH
Q 014516          154 HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKK  233 (423)
Q Consensus       154 ~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~  233 (423)
                      .+++.+|..|||+|++|+||+|+++++...... ...+++||.+|+++++.||||||||+||+|++.+++.....+|+++
T Consensus        90 ~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~  168 (306)
T 3dra_A           90 DWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF  168 (306)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence            999999999999999999999999655421100 0126899999999999999999999999999999976333499999


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 014516          234 SRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLI  313 (423)
Q Consensus       234 ~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~  313 (423)
                      ++++|+.||+|+||||||++++.++...              ....++++|+++++++|..+|+|+|+|+|+++++....
T Consensus       169 ~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          169 VDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcccc--------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            9999999999999999999999986321              12357999999999999999999999999999986521


Q ss_pred             HHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhc
Q 014516          314 KHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRA  393 (423)
Q Consensus       314 ~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~  393 (423)
                      +                  ..++...|..       .++..+..+       ..+.+.+.||.+.+.+. | +.     .
T Consensus       235 ~------------------~~~~~~~~~~-------~~~~~~~~~-------~~s~~al~~la~~~~~~-~-~~-----~  275 (306)
T 3dra_A          235 R------------------SITQLEEFSL-------QFVDLEKDQ-------VTSSFALETLAKIYTQQ-K-KY-----N  275 (306)
T ss_dssp             C------------------CGGGGHHHHH-------TTEEGGGTE-------ESCHHHHHHHHHHHHHT-T-CH-----H
T ss_pred             C------------------ChHHHHHHHH-------HHHhccCCC-------CCCHHHHHHHHHHHHcc-C-CH-----H
Confidence            0                  0112333432       333322111       23577889999887643 3 11     2


Q ss_pred             chhhHHHHhh-hcCcCccchhhhhhccCCC
Q 014516          394 GVGDVTRMLK-RSCPDRSSLWDYLVGYHSE  422 (423)
Q Consensus       394 ~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~  422 (423)
                      +|.++.+.|. ++||+|++||+|+++.+..
T Consensus       276 ~A~~~~~~l~~~~Dpir~~yW~~~~~~l~~  305 (306)
T 3dra_A          276 ESRTVYDLLKSKYNPIRSNFWDYQISKLTS  305 (306)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHhccChHHHHHHHHHHhhccc
Confidence            5888888886 7999999999999998863

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=3.8e-51  Score=409.60  Aligned_cols=322  Identities=16%  Similarity=0.154  Sum_probs=239.0

Q ss_pred             HhhccCCCCCcccccCCcccccchhhhcccCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCC
Q 014516           22 RILDLDPLIDEVGFIHPSQFATLKEEIGDSLSSEDRDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN  101 (423)
Q Consensus        22 ~~l~~dp~idEv~~i~~s~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~  101 (423)
                      ..++.+|.|++|.+||.       ++              +|       =+|-...+.+.|+.|...|+..++       
T Consensus        21 ~~~~~~~~w~dv~p~~~-------~~--------------~~-------~~~~~i~y~~~y~~~~~~~r~~~~-------   65 (349)
T 3q7a_A           21 IPMSQRRSWADVKPIMQ-------DD--------------GP-------NPVVPIMYSEEYKDAMDYFRAIAA-------   65 (349)
T ss_dssp             CCTTSCGGGTTCCCCCC-------CC--------------CS-------SCSSCBCCCHHHHHHHHHHHHHHH-------
T ss_pred             cCcccCcccCCCcccCC-------CC--------------CC-------CCeeeeeeCHHHHHHHHHHHHHHH-------
Confidence            34566899999988882       11              11       134445667899999999998877       


Q ss_pred             CCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516          102 FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS  181 (423)
Q Consensus       102 ~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~  181 (423)
                            .+++++++|++|+++|.+||++|||||+||.+|..++  ..+++||.+++.+|..|||+|++|+||+|++.++.
T Consensus        66 ------~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~  137 (349)
T 3q7a_A           66 ------KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS  137 (349)
T ss_dssp             ------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             ------hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence                  4578899999999999999999999999999999986  46999999999999999999999999999999983


Q ss_pred             hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh------hHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE------QVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      ..      .+.+||++|++++++||||||||+||+|++.+++..      .+.+||++++++|+.||+|+|||+||++++
T Consensus       138 ~~------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          138 PQ------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             CS------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CC------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            21      147999999999999999999999999999988642      356999999999999999999999999999


Q ss_pred             HHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchh
Q 014516          256 LRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDI  335 (423)
Q Consensus       256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~  335 (423)
                      .++...             .....++++|+++++++|.++|+|+|+|+|+|+|+.........-.....|....      
T Consensus       212 ~~l~~~-------------~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~------  272 (349)
T 3q7a_A          212 VSRPGA-------------ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS------  272 (349)
T ss_dssp             TTSTTC-------------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred             Hhcccc-------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccc------
Confidence            886421             0124578999999999999999999999999999865221100000000111100      


Q ss_pred             hHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHh-hhcCcCccchhh
Q 014516          336 DIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRML-KRSCPDRSSLWD  414 (423)
Q Consensus       336 ~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~r~~~w~  414 (423)
                      .+...+..=.+++.+.....+.+   +.+ +.+.+++.+|++.+.+. |    +  ..+|.++.+.| +++||||++||+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~s~~al~~l~d~~~~~-~----~--~~~a~~~~~~l~~~~dpir~~yw~  341 (349)
T 3q7a_A          273 KLNPDIETVEAFGFPMPSDPLPE---DTP-LPVPLALEYLADSFIEQ-N----R--VDDAAKVFEKLSSEYDQMRAGYWE  341 (349)
T ss_dssp             -------------CCCCC-CCCS---SCC-SCCHHHHHHHHHHHHHT-T----C--HHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             cccccchhHHHHHHHHHhccccc---ccC-CCcHHHHHHHHHHHHhc-C----C--HHHHHHHHHHHHhhhChHHHHHHH
Confidence            01001111111222222211100   011 45788999999998755 4    1  12688899999 599999999999


Q ss_pred             hhhccCCC
Q 014516          415 YLVGYHSE  422 (423)
Q Consensus       415 ~~~~~~~~  422 (423)
                      |+++.+.|
T Consensus       342 ~~~~~~~~  349 (349)
T 3q7a_A          342 FRRRECAE  349 (349)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHhhcC
Confidence            99998765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=6.8e-46  Score=369.59  Aligned_cols=282  Identities=19%  Similarity=0.265  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCC-------cCCHHH
Q 014516           79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRL-------LPILMD  151 (423)
Q Consensus        79 ~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~-------~~~~~~  151 (423)
                      ++.|+.++..|+..++             .+++++++|++|+.+|.+||+||||||+||.+|..++.       ...+++
T Consensus        26 i~~y~~~~~~~~~~~~-------------~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~   92 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA   92 (331)
T ss_dssp             HHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence            5689999888888766             56899999999999999999999999999999988751       012789


Q ss_pred             HHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH
Q 014516          152 ELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL  231 (423)
Q Consensus       152 EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL  231 (423)
                      ||.+++.+|..|||||++|+||+|++.++...      .+++|+.+|+++++.||||||||+||+||+..++. .+++|+
T Consensus        93 EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-~~~eel  165 (331)
T 3dss_A           93 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEEL  165 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-CHHHHH
Confidence            99999999999999999999999999988642      27899999999999999999999999999999875 368999


Q ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516          232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY  311 (423)
Q Consensus       232 ~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (423)
                      ++++++|+.||+|+|||+||++++.++......++    .+  ......+++|++++.++|.++|+|+|+|+|+|+|+..
T Consensus       166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~----~~--~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc----cc--ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999743210000    00  1123579999999999999999999999999999864


Q ss_pred             HHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHH--Hhhhhccccchhhhh
Q 014516          312 LIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLW--LTKQIPEYQGIDIQE  389 (423)
Q Consensus       312 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~W--l~~~~~~~~~~~~~~  389 (423)
                      ...     ..++          .......|++|++.+.+++..+|+.         .|.+..=  +...+ +..|  .++
T Consensus       240 ~~~-----~~~~----------~~~~~~~l~~el~~~~elle~~pd~---------~w~l~~~~~~~~~~-~~~~--~~~  292 (331)
T 3dss_A          240 GSG-----RCEL----------SVEKSTVLQSELESCKELQELEPEN---------KWCLLTIILLMRAL-DPLL--YEK  292 (331)
T ss_dssp             SSC-----GGGC----------CHHHHHHHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHH-CTTT--THH
T ss_pred             ccC-----cccc----------chHHHHHHHHHHHHHHHHHhhCccc---------chHHHHHHHHHHhh-cccc--cHH
Confidence            210     0001          1346789999999999999999976         3443221  11111 1112  111


Q ss_pred             hhhcchhhHHHHhhhcCcCccchhhhhh
Q 014516          390 KLRAGVGDVTRMLKRSCPDRSSLWDYLV  417 (423)
Q Consensus       390 ~~~~~~~~~~~~l~~~~p~r~~~w~~~~  417 (423)
                          +...++.-|.+-||.|++||....
T Consensus       293 ----~~~~~l~~l~~~Dp~r~~~y~d~~  316 (331)
T 3dss_A          293 ----ETLQYFSTLKAVDPMRAAYLDDLR  316 (331)
T ss_dssp             ----HHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCcchhhHHHHHH
Confidence                456778888899999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=100.00  E-value=6.6e-37  Score=325.64  Aligned_cols=209  Identities=21%  Similarity=0.327  Sum_probs=180.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCc-------CCH
Q 014516           77 ILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLL-------PIL  149 (423)
Q Consensus        77 ~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~-------~~~  149 (423)
                      .-++.|+.|+..|++..+             .++++++++++|+++|.+||++|||||+||.++..++..       ..+
T Consensus        23 ~k~~~y~~~~~~~~~~~~-------------~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~   89 (567)
T 1dce_A           23 QKLKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV   89 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhH
Confidence            347899999999998765             468899999999999999999999999999999988610       018


Q ss_pred             HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHH
Q 014516          150 MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD  229 (423)
Q Consensus       150 ~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~  229 (423)
                      ++||.+++.+|..+||+|++|+||+|++.++...      .+++|+++|+++++.||+|||||+||+|++..++. .+++
T Consensus        90 ~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-~~~~  162 (567)
T 1dce_A           90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAE  162 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-ChHH
Confidence            9999999999999999999999999999998742      27999999999999999999999999999999873 3799


Q ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          230 ELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       230 EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      |+++++++|+.||+|+|||+||++++.++........    .|  ......+++|++++.++|..+|+|+|+|+|+|+++
T Consensus       163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~----~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll  236 (567)
T 1dce_A          163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  236 (567)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS----CC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc----cc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999998743210000    00  01235799999999999999999999999999998


Q ss_pred             HH
Q 014516          310 MY  311 (423)
Q Consensus       310 ~~  311 (423)
                      ..
T Consensus       237 ~~  238 (567)
T 1dce_A          237 GR  238 (567)
T ss_dssp             SC
T ss_pred             hc
Confidence            64

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=6.4e-35  Score=292.10  Aligned_cols=211  Identities=16%  Similarity=0.246  Sum_probs=182.1

Q ss_pred             HHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516          123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA  202 (423)
Q Consensus       123 Ll~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l  202 (423)
                      |..+|++..+|++++.++.+..   .-+++|.+++.+|..||++|++|+||+++|..++.       .+++||.+++.++
T Consensus        47 i~y~~~y~~~~~~~r~~~~~~e---~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~L  116 (349)
T 3q7a_A           47 IMYSEEYKDAMDYFRAIAAKEE---KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-------SLEDELRLMNEFA  116 (349)
T ss_dssp             BCCCHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred             eeeCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHH
Confidence            5778899999999999999875   45789999999999999999999999999998864       2789999999999


Q ss_pred             HhcCCCchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHH
Q 014516          203 ERSKMNYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIW  281 (423)
Q Consensus       203 ~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  281 (423)
                      ..+||||.||+||+|++..+ + ..+.+||++++++++.||+|++||+||++++.++....            .....++
T Consensus       117 ~~nPKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~------------~~~~~~~  183 (349)
T 3q7a_A          117 VQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG------------RISEAQW  183 (349)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHCC-SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT------------CCCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc------------ccchhhH
Confidence            99999999999999999998 4 23689999999999999999999999999999875320            0113578


Q ss_pred             HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhh
Q 014516          282 KEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFE  361 (423)
Q Consensus       282 ~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~  361 (423)
                      .+|+++++++|+.+|+|+|+|+||++++..+.        ..           ......+++|+++++++++++|+|   
T Consensus       184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~--------~~-----------~~~~~~~~eELe~~~~aI~~~P~n---  241 (349)
T 3q7a_A          184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP--------GA-----------ETSSRSLQDELIYILKSIHLIPHN---  241 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST--------TC-----------CCCHHHHHHHHHHHHHHHHHCTTC---
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc--------cc-----------ccchHHHHHHHHHHHHHHHhCCCC---
Confidence            89999999999999999999999999985411        00           012467899999999999999999   


Q ss_pred             hHHHHHHHHHHHHHhhhhccc
Q 014516          362 EAQAIHSAAYMLWLTKQIPEY  382 (423)
Q Consensus       362 ~~q~~~~~~y~~Wl~~~~~~~  382 (423)
                        |  ++|.|++||+.+.+..
T Consensus       242 --~--SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          242 --V--SAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             --H--HHHHHHHHHHHHTTCC
T ss_pred             --H--HHHHHHHHHHHhcCCC
Confidence              4  5999999999876544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=6.7e-34  Score=283.17  Aligned_cols=194  Identities=23%  Similarity=0.340  Sum_probs=162.6

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (423)
                      .-+++|.+++.+|..||++|++|+|||++|..++...+  .....+.+||.+++.++..+||||++|+||+|++..++.+
T Consensus        45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence            34678999999999999999999999999998875311  2334589999999999999999999999999999999865


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                      .+.+|+++++++++.||+|||||+||++++..+..                   .+++|+++++++|..+|+|.|+|+||
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------------------~~~eel~~~~~~I~~~p~N~SAW~~R  185 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYR  185 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------------------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            68999999999999999999999999999998621                   26899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhh
Q 014516          306 RFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQI  379 (423)
Q Consensus       306 r~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~  379 (423)
                      ++++..+....     +.+.    .+..   ....+++|+++++++++++|+|     |  ++|.|++||+.+.
T Consensus       186 ~~ll~~l~~~~-----~~~~----~~~~---~~~~~~eEle~~~~ai~~~P~d-----~--SaW~Y~r~ll~~~  240 (331)
T 3dss_A          186 SCLLPQLHPQP-----DSGP----QGRL---PENVLLKELELVQNAFFTDPND-----Q--SAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHHSCCC---------------CC---CHHHHHHHHHHHHHHHHHSTTC-----H--HHHHHHHHHHHSS
T ss_pred             HHHHHHhhhcc-----cccc----cccc---chHHHHHHHHHHHHHHHhCCCC-----H--HHHHHHHHHHHhc
Confidence            99987632100     0000    0011   2367899999999999999999     4  5999999999775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.97  E-value=1.7e-30  Score=276.20  Aligned_cols=195  Identities=22%  Similarity=0.340  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc--ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          149 LMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       149 ~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      -+++|.+++.+|..||++|++|+|||+++..++...  ......+++|+++++++++.+||||+||+||+|++.+++...
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            466699999999999999999999999999987632  134456899999999999999999999999999999998656


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                      +++|+++++++++.||+|+|||+||++++.++..                   .+++|+++++++|+.+|+|+|+|+||+
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el~~~~~~I~~~p~n~saW~~r~  185 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRS  185 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHHCCCCccHHHHHH
Confidence            8999999999999999999999999999998621                   368999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhcc
Q 014516          307 FLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPE  381 (423)
Q Consensus       307 ~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~  381 (423)
                      +++..+...     .+..+    .+.+   ....+++|+++++.|++++|+|     |+  +|.|+.|+..+...
T Consensus       186 ~ll~~l~~~-----~~~~~----~~~~---~~~~~~eel~~~~~ai~~~P~~-----~s--aW~y~~~ll~~~~~  241 (567)
T 1dce_A          186 CLLPQLHPQ-----PDSGP----QGRL---PENVLLKELELVQNAFFTDPND-----QS--AWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHSCC-----CCSSS----CCSS---CHHHHHHHHHHHHHHHHHCSSC-----SH--HHHHHHHHHSCCCC
T ss_pred             HHHHhhccc-----ccccc----cccc---cHHHHHHHHHHHHHHHhhCCCC-----cc--HHHHHHHHHhcCCC
Confidence            998653110     00000    0011   1356899999999999999999     44  99999999977543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.97  E-value=8.9e-31  Score=258.29  Aligned_cols=200  Identities=17%  Similarity=0.228  Sum_probs=166.0

Q ss_pred             CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516          128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (423)
Q Consensus       128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (423)
                      ++..+..+-+.++....   .-++.|.+++.+|..||++|++|++|+.+|..++.      ..+++||.+++.++..+|+
T Consensus        31 ~y~~~~~~~~a~~~~~e---~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------~~~~eeL~~~~~~L~~nPk  101 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEE---YSERALHITELGINELASHYTIWIYRFNILKNLPN------RNLYDELDWCEEIALDNEK  101 (306)
T ss_dssp             HHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------SCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------ccHHHHHHHHHHHHHHCcc
Confidence            34455555566666653   45789999999999999999999999999998872      1289999999999999999


Q ss_pred             CchhchHHHHHH----HhcCh-hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHH
Q 014516          208 NYRAWNHRCWLV----SFMTR-EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWK  282 (423)
Q Consensus       208 NY~AW~hR~wll----~~~~~-~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~  282 (423)
                      ||.+|+||+|++    ..++. ..+.+|++++++++..||+|++||+||++++.++...                  -..
T Consensus       102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~------------------~~~  163 (306)
T 3dra_A          102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH------------------NDA  163 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT------------------TCH
T ss_pred             cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------------ChH
Confidence            999999999999    55421 3589999999999999999999999999999986310                  023


Q ss_pred             HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhh
Q 014516          283 EELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEE  362 (423)
Q Consensus       283 eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~  362 (423)
                      +|+++++++|+.+|+|.|+|+||++++..+.        ..            .....+++|+++++++++++|+|    
T Consensus       164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~--------~~------------~~~~~~~eEl~~~~~aI~~~p~n----  219 (306)
T 3dra_A          164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKK--------HL------------ATDNTIDEELNYVKDKIVKCPQN----  219 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG--------GG------------CCHHHHHHHHHHHHHHHHHCSSC----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc--------cc------------chhhhHHHHHHHHHHHHHhCCCC----
Confidence            8999999999999999999999999986421        00            02356899999999999999999    


Q ss_pred             HHHHHHHHHHHHHhhhhcc
Q 014516          363 AQAIHSAAYMLWLTKQIPE  381 (423)
Q Consensus       363 ~q~~~~~~y~~Wl~~~~~~  381 (423)
                         .++|.|+.|++...+.
T Consensus       220 ---~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          220 ---PSTWNYLLGIHERFDR  235 (306)
T ss_dssp             ---HHHHHHHHHHHHHTTC
T ss_pred             ---ccHHHHHHHHHHhcCC
Confidence               4599999999987654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=9.2e-27  Score=236.10  Aligned_cols=274  Identities=18%  Similarity=0.263  Sum_probs=207.4

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHH
Q 014516           71 LGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILM  150 (423)
Q Consensus        71 Lgi~~~~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~  150 (423)
                      .++....+.+-|..+...+...+.             .....++++..++.+|.+||+++++|++|+.++..++  .+++
T Consensus        85 ~~~~ai~~~p~~~~a~~~lg~~~~-------------~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~  149 (382)
T 2h6f_A           85 NPVVQIIYSDKFRDVYDYFRAVLQ-------------RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLH  149 (382)
T ss_dssp             SCSSEECCCHHHHHHHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHH
T ss_pred             CcchhhhCChhhHHHHHHHHHHHH-------------HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHH
Confidence            334444445556666554444433             1244689999999999999999999999999999986  2499


Q ss_pred             HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516          151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE  230 (423)
Q Consensus       151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E  230 (423)
                      +++.+++.+|..+|+++.+|++|++++..++.        +.+++.++.++++.+|+|+++|.+|+|++..++.  ++++
T Consensus       150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eA  219 (382)
T 2h6f_A          150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNE  219 (382)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHH
Confidence            99999999999999999999999999999876        5789999999999999999999999999999876  7899


Q ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          231 LKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       231 L~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +++++++|..||+|.++|++|+.++..+.+.              ....++..|++++.++|..+|+|.++|+|+++++.
T Consensus       220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~--------------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~  285 (382)
T 2h6f_A          220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGY--------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ  285 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS--------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc--------------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999885321              01245788899999999999999999999998874


Q ss_pred             HHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccch----h
Q 014516          311 YLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGI----D  386 (423)
Q Consensus       311 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~----~  386 (423)
                      .    .     +..           +.    .+-++.+..+ ..+|++.       .+..   .|.+.+.+. |-    +
T Consensus       286 ~----~-----g~~-----------~~----~~a~~~~~~~-~~~p~~~-------~al~---~La~~~~~~-~~~~~~~  329 (382)
T 2h6f_A          286 D----R-----GLS-----------KY----PNLLNQLLDL-QPSHSSP-------YLIA---FLVDIYEDM-LENQCDN  329 (382)
T ss_dssp             T----T-----CGG-----------GC----HHHHHHHHHH-TTTCCCH-------HHHH---HHHHHHHHH-HHTTCSS
T ss_pred             c----c-----Ccc-----------ch----HHHHHHHHHh-ccCCCCH-------HHHH---HHHHHHHHH-hcccccc
Confidence            3    0     000           01    1123344455 6678762       1222   222222111 10    0


Q ss_pred             hhhhhhcchhhHHHHh-hhcCcCccchhhhhhccC
Q 014516          387 IQEKLRAGVGDVTRML-KRSCPDRSSLWDYLVGYH  420 (423)
Q Consensus       387 ~~~~~~~~~~~~~~~l-~~~~p~r~~~w~~~~~~~  420 (423)
                      ..+.. .++.++++.+ .+.||+|++||.++.+.+
T Consensus       330 ~~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          330 KEDIL-NKALELCEILAKEKDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             hHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            01111 2678888899 699999999999998654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.83  E-value=2.4e-20  Score=188.88  Aligned_cols=200  Identities=15%  Similarity=0.309  Sum_probs=175.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516          121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (423)
Q Consensus       121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (423)
                      ++|.++|++..+|++++.++...+   .+++++..++.+|..+|+++++|++|+.++..++..       +++++.++.+
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g---~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d-------~~eAl~~~~~  157 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD-------LHEEMNYITA  157 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------HHHHHHHHHH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC-------HHHHHHHHHH
Confidence            457899999999999999998875   789999999999999999999999999999988641       6899999999


Q ss_pred             HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHH
Q 014516          201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQI  280 (423)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (423)
                      +++.+|+|+.+|+||++++..++.  +.+++..+++.|.+||.|.++|.+|++++..+.                    .
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g--------------------~  215 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------------------L  215 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------------------C
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC--------------------C
Confidence            999999999999999999998875  789999999999999999999999999998863                    2


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchh
Q 014516          281 WKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANF  360 (423)
Q Consensus       281 ~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~  360 (423)
                      +++++++++++|..+|+|.++|+++..++..+.        +.         .   ....+..|++.++.++.++|++  
T Consensus       216 ~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~--------~~---------~---~eA~~~~el~~~~~Al~l~P~~--  273 (382)
T 2h6f_A          216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT--------GY---------N---DRAVLEREVQYTLEMIKLVPHN--  273 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CS---------C---SHHHHHHHHHHHHHHHHHSTTC--
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------Cc---------c---hHHHHHHHHHHHHHHHHHCCCC--
Confidence            467999999999999999999999988864311        00         0   1245788999999999999999  


Q ss_pred             hhHHHHHHHHHHHHHhhhh
Q 014516          361 EEAQAIHSAAYMLWLTKQI  379 (423)
Q Consensus       361 ~~~q~~~~~~y~~Wl~~~~  379 (423)
                           ..+|.|+.|+....
T Consensus       274 -----~~a~~~l~~ll~~~  287 (382)
T 2h6f_A          274 -----ESAWNYLKGILQDR  287 (382)
T ss_dssp             -----HHHHHHHHHHHTTT
T ss_pred             -----HHHHHHHHHHHHcc
Confidence                 45999999988663

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.27  E-value=6.5e-10  Score=102.00  Aligned_cols=173  Identities=8%  Similarity=-0.087  Sum_probs=148.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh---h
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST---L  187 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~---~  187 (423)
                      ..++++..++.+|.++|++..+|..+..++...+   .+++++..+..++..+|++..+|..+..++.........   .
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           20 RYDAALTLFERALKENPQDPEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            3588999999999999999999999999999886   789999999999999999999999999998887110000   0


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                      ..-+.+.+..+.++++.+|.+..+|..++.++...+.  +++.+..+++.+..+ .+..+|..+..++..+.        
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g--------  165 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSMG--------  165 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHT--------
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcC--------
Confidence            0127899999999999999999999999999988766  889999999999999 88899998888877652        


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                  -+++.+....+++..+|++..+|..+..++
T Consensus       166 ------------~~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          166 ------------RLDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             ------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence                        267889999999999999999998876654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.25  E-value=4.2e-10  Score=99.06  Aligned_cols=154  Identities=6%  Similarity=-0.050  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++++.++++|.++|++..+|..+..+....+   ..++.+..+..++..+|++..+|.....+......        +
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   89 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE--------K   89 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC--------H
Confidence            488999999999999999999999999998886   78999999999999999999999999888877655        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      ...+..+.+++..+|.+..+|..++.+...++.  +++.++.+++.++.+|.|..+|..+..+..++.            
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g------------  155 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG------------  155 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC------------
Confidence            788899999999999999999999999988765  899999999999999999999999999887752            


Q ss_pred             CchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516          272 GYFVETYQIWKEELDWNESLIKQYVGR  298 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~~~p~n  298 (423)
                              -+++.+++.+++|+.+|.|
T Consensus       156 --------~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          156 --------LRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             --------CHHHHHHHHHHHHHTTHHH
T ss_pred             --------CHHHHHHHHHHHHhCCccC
Confidence                    2678999999999999975

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.11  E-value=7.6e-09  Score=90.89  Aligned_cols=151  Identities=9%  Similarity=-0.082  Sum_probs=133.6

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      ++..++|+..+.+....+   ++++++..+..+|..+|++..+|..+..++..++.        +++.+..+.+++..+|
T Consensus         2 ge~~~iy~~lG~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~~   70 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKG---DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLDT   70 (184)
T ss_dssp             --CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCc
Confidence            467899999999998876   89999999999999999999999999999988766        6889999999999999


Q ss_pred             CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHH
Q 014516          207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELD  286 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~  286 (423)
                      .+..+|...+.+......  +...+....+.+..+|.+..+|..+..+...+.                    .+++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--------------------~~~~A~~  128 (184)
T 3vtx_A           71 TSAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMG--------------------EHDKAIE  128 (184)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--------------------CchhHHH
Confidence            999999999888877654  788899999999999999999999998887652                    3788999


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHH
Q 014516          287 WNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       287 ~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +.++++..+|.+..+|+.+..++.
T Consensus       129 ~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A          129 AYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHH
Confidence            999999999999999998776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.07  E-value=1.4e-09  Score=91.84  Aligned_cols=121  Identities=7%  Similarity=0.021  Sum_probs=109.1

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516          121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (423)
Q Consensus       121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (423)
                      .+.-+||+...+|+-|+......+   .+++++..++.++..+|+++.+|..+..++..++.        +.+.+..+.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~   72 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKG---DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDT   72 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHH
Confidence            345689999999999999888875   89999999999999999999999999999998876        7899999999


Q ss_pred             HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +++.+|.+..+|..++.+...++.  +++.+..+++.++.+|.|..++.....+
T Consensus        73 al~~~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           73 CIRLDSKFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999988876  8999999999999999999988766544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.03  E-value=2.3e-08  Score=91.08  Aligned_cols=184  Identities=6%  Similarity=-0.049  Sum_probs=145.7

Q ss_pred             chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          111 LAIEVMIHSKALLLLSC-DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nP-e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ..++++..+..++.++| .+..+|..++.+....+   .+++++..+..++..+|++..+|..+..++..++.       
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------   91 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN-------   91 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC-------
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc-------
Confidence            35889999999999999 99999999999998886   79999999999999999999999999999988776       


Q ss_pred             hHHHHHHHHHHHHHhcCCCc-------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhh
Q 014516          190 IIERESELVEKIAERSKMNY-------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNLE  260 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~~  260 (423)
                       +.+.+..+.++++.+|.|.       .+|...+.+....+.  +++.++.+.+.++.+|.  +..+|..+..+......
T Consensus        92 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A           92 -NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             -HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence             7899999999999999999       558888877766654  89999999999999999  88999998887665422


Q ss_pred             cc---cccCCC-CCC---CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516          261 GF---CYTQDN-NSS---GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF  307 (423)
Q Consensus       261 ~~---~~~~~~-~~~---~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~  307 (423)
                      ..   .....+ ...   +........+++.+.+..+++..+|+|..+......
T Consensus       169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  222 (228)
T 4i17_A          169 DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            10   000000 000   000112345688899999999999999877665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.01  E-value=9.2e-09  Score=112.09  Aligned_cols=153  Identities=11%  Similarity=-0.029  Sum_probs=118.6

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      -+|+|..+++..+.++...+   .+++++..+.++|..+|++..+|+....++.+++.        +++.+..+.++++.
T Consensus         4 s~P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRI   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence            36888888888888887775   67888888888888888888888888888777765        67778888888888


Q ss_pred             cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHH
Q 014516          205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEE  284 (423)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eE  284 (423)
                      +|.+..+|...+.++..++.  +++.++.+++.++++|.+..+|..+..++..+.                    .+++.
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g--------------------~~~eA  130 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDSG--------------------NIPEA  130 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHH
Confidence            88888888888888777665  777888888888888888888888887776641                    25677


Q ss_pred             HHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          285 LDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       285 L~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +++.+++++.+|++..+|+.+..++.
T Consensus       131 i~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          131 IASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            78888888888888888877666553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.01  E-value=4.4e-08  Score=89.63  Aligned_cols=149  Identities=7%  Similarity=-0.138  Sum_probs=130.9

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      |.+..+|..++.++...+   .+++++..+..++..+|++..+|..+..++...+.        +.+.+..+.++++.+|
T Consensus         2 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALG---RYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------VNPALENGKTLVARTP   70 (217)
T ss_dssp             --CCHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC
Confidence            778889999999988876   79999999999999999999999999999988776        6899999999999999


Q ss_pred             CCchhchHHHHHHHhc-----------ChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchh
Q 014516          207 MNYRAWNHRCWLVSFM-----------TREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV  275 (423)
Q Consensus       207 kNY~AW~hR~wll~~~-----------~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~  275 (423)
                      .+..+|...+.++...           +.  +++.+..+.+.+..+|.+..+|..+..++....                
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g----------------  132 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG----------------  132 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------------
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----------------
Confidence            9999999999998776           44  788999999999999999999999998887642                


Q ss_pred             chHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          276 ETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       276 ~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                          -+++.+....+++..+ ++..+|..+..++
T Consensus       133 ----~~~~A~~~~~~al~~~-~~~~~~~~la~~~  161 (217)
T 2pl2_A          133 ----ERDKAEASLKQALALE-DTPEIRSALAELY  161 (217)
T ss_dssp             ----CHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred             ----ChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence                2678899999999999 8888888766554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.00  E-value=5.5e-08  Score=95.45  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++..+..++.++|++..+|+.+..++...+   .+++++..+..++..+|+++.+|.....++..++.        +
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~  151 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR--------L  151 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--------H
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------H
Confidence            466777777777777777777777777666654   55667777777777777777777776666665544        5


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ++.+.+..++++.+|.+..+|...+.+....+.  +.+.+..+++.+..+|.+..+|..+..+...
T Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  215 (388)
T 1w3b_A          152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLDPNFLDAYINLGNVLKE  215 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            666677777777777777777776666655543  5666777777777777777777666665544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.98  E-value=2.2e-08  Score=103.09  Aligned_cols=179  Identities=9%  Similarity=0.012  Sum_probs=150.4

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-hhH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-TLQ  188 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-~~~  188 (423)
                      .+.+++++.+..+|.++|++..+|+..+.++...+   .+++++..+..++..+|+ +.+|.....++..+..... ...
T Consensus       117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            34489999999999999999999999999998876   799999999999999999 7899888888876600000 001


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc----C--hhhHHHHHHHHHHHHhccC---CChhHHHHHHHHHHHhh
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFM----T--REQVLDELKKSRNWSGLHV---ADNSCFHYRRRLMLRNL  259 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~----~--~~~~~~EL~~~~k~i~~d~---~N~SaW~yR~~Ll~~l~  259 (423)
                      ..+++.+..+.++++.+|.+..+|...+.++..+    +  ...+++.+..+.+.+..+|   .+..+|..+..++..+.
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g  272 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE  272 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcC
Confidence            2278999999999999999999999999998765    1  1348899999999999999   99999999998887752


Q ss_pred             hcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 014516          260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYL  312 (423)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l  312 (423)
                                          -+++.+++..+++..+|++..+|..+..++..+
T Consensus       273 --------------------~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          273 --------------------SYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                                268899999999999999999999988777653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.97  E-value=3.4e-09  Score=114.37  Aligned_cols=166  Identities=4%  Similarity=-0.221  Sum_probs=149.7

Q ss_pred             cchHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516          110 TLAIEVMIHSKALL--------LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS  181 (423)
Q Consensus       110 ~~~~~~L~~t~~lL--------l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~  181 (423)
                      ...+++++.++.++        ..+|++..+|..+..++...+   .+++++..++.++..+|++..+|+++..++..++
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            34588999999999        999999999999999998876   7999999999999999999999999999998877


Q ss_pred             hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhc
Q 014516          182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG  261 (423)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~  261 (423)
                      .        +++.+..+.++++.+|.+..+|..++.+...++.  +++ ++.+++.++.+|.|..+|..+..++..+.  
T Consensus       482 ~--------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g--  548 (681)
T 2pzi_A          482 D--------YDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAEG--  548 (681)
T ss_dssp             C--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred             C--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC--
Confidence            6        7899999999999999999999999999988765  677 99999999999999999999998887752  


Q ss_pred             ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                        .+++.++...+++..+|++..+|..+..++
T Consensus       549 ------------------~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          549 ------------------DRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             ------------------CHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             ------------------CHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence                              267899999999999999999998876664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=1.3e-07  Score=92.74  Aligned_cols=196  Identities=10%  Similarity=-0.064  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.+++........    ....-......+++++.+..++.++|++.++|+....++...+   .+++++..+
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~  158 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG---RLEEAKACY  158 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHH
Confidence            367777777777653111000    0000001123467888999999999999999999999998875   789999999


Q ss_pred             HHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516          157 ALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN  236 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k  236 (423)
                      ..++..+|.+..+|+....++...+.        +...+..+.++++.+|.+..+|...+.+....+.  +++.+..+.+
T Consensus       159 ~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~  228 (388)
T 1w3b_A          159 LKAIETQPNFAVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI--FDRAVAAYLR  228 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence            99999999999999998888776654        6788888999999999999999888888876654  6778888888


Q ss_pred             HHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       237 ~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      .+..+|.+..+|..+..+.....                    .+++.++...+++..+|.+..+|..+..++
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  281 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQG--------------------LIDLAIDTYRRAIELQPHFPDAYCNLANAL  281 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            88889988888888777665531                    255667777777777777777776655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.95  E-value=3.1e-07  Score=86.63  Aligned_cols=198  Identities=10%  Similarity=-0.049  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCC----CCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516           80 PVYKAAKHAFISALRQYKTPGNFSG----KSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHL  155 (423)
Q Consensus        80 ~lY~~A~~~f~~~l~~y~~~~~~~~----~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~  155 (423)
                      .-|..|.+.|.+++...........    ........++++.....++..+|++..+|.....+....+  ...++++..
T Consensus        36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~  113 (330)
T 3hym_B           36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HKNEHARRY  113 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hhHHHHHHH
Confidence            3578888888887764322111000    0001234588999999999999999999999999888764  368899999


Q ss_pred             HHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516          156 SALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSR  235 (423)
Q Consensus       156 ~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (423)
                      +..++..+|++..+|.....++...+.        +.+.+..+.++++.+|.+..+|.....+....+.  +++.+..+.
T Consensus       114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~  183 (330)
T 3hym_B          114 LSKATTLEKTYGPAWIAYGHSFAVESE--------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--SKLAERFFS  183 (330)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence            999999999999999999998887765        6889999999999999999999998888877654  789999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc---------CCCccHHHHHH
Q 014516          236 NWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY---------VGREALWLHRR  306 (423)
Q Consensus       236 k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~---------p~neSaW~yrr  306 (423)
                      +.+..+|.+..+|..+..+.....                    -+++.+.+..+++...         |.+..+|..+.
T Consensus       184 ~al~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la  243 (330)
T 3hym_B          184 QALSIAPEDPFVMHEVGVVAFQNG--------------------EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG  243 (330)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence            999999999999999888777642                    2677888888888876         66667777765


Q ss_pred             HHH
Q 014516          307 FLS  309 (423)
Q Consensus       307 ~Ll  309 (423)
                      .+.
T Consensus       244 ~~~  246 (330)
T 3hym_B          244 HVC  246 (330)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.93  E-value=4.5e-08  Score=106.61  Aligned_cols=136  Identities=10%  Similarity=0.022  Sum_probs=127.5

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++++++++|.++|++..+|+.++.++...+   .+++++..+..+|..+|++..+|+.+..++..++.        
T Consensus        24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~--------   92 (723)
T 4gyw_A           24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------   92 (723)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            3589999999999999999999999999999986   79999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNL  259 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~  259 (423)
                      +++.++.+.++++.+|.+..+|...+.++...+.  +++.++.+++.++++|.+..+|..+..++..+.
T Consensus        93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence            7899999999999999999999999999988876  899999999999999999999999999888763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.91  E-value=2.7e-07  Score=82.07  Aligned_cols=162  Identities=10%  Similarity=-0.061  Sum_probs=139.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHh-hhccChhHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI-SRNCSTLQW  189 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l-~~~~~~~~~  189 (423)
                      ..++++.....++..+|++..+|.....+....+   .+++.+..+..++..+|.+..+|.....++... +.       
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------   92 (225)
T 2vq2_A           23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR-------   92 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC-------
T ss_pred             hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc-------
Confidence            3588999999999999999999999999988875   789999999999999999999999988887766 54       


Q ss_pred             hHHHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          190 IIERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       190 ~~~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                       +++.+.++.++++  .+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|.....+.....        
T Consensus        93 -~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------  161 (225)
T 2vq2_A           93 -PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG--------  161 (225)
T ss_dssp             -HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT--------
T ss_pred             -HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC--------
Confidence             6888999999999  778888999999888877655  788999999999999999999988887776642        


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcC-CCccHHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYV-GREALWLHR  305 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p-~neSaW~yr  305 (423)
                                  .+++.+.+..+++..+| .+..+|...
T Consensus       162 ------------~~~~A~~~~~~~~~~~~~~~~~~~~~~  188 (225)
T 2vq2_A          162 ------------QLGDADYYFKKYQSRVEVLQADDLLLG  188 (225)
T ss_dssp             ------------CHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             ------------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence                        26778889999999999 888877543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.90  E-value=2.3e-07  Score=95.54  Aligned_cols=175  Identities=13%  Similarity=0.055  Sum_probs=147.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCH-HHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPIL-MDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~-~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      .++++.....++...|+...+|..++.++...+   .+ ++++..+..++..+|++..+|.....++...+.        
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------  152 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD--------  152 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------
Confidence            466777888888899999999999999998875   78 999999999999999999999999999988766        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC-------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccc
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT-------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFC  263 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~  263 (423)
                      +++.+.++.++++.+|. ..+|...+.++..+.       ...+++.++.+.+.+..+|.|..+|..+..++..+.-.. 
T Consensus       153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-  230 (474)
T 4abn_A          153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNT-  230 (474)
T ss_dssp             HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh-
Confidence            78999999999999998 689999999887760       024788999999999999999999999998887651110 


Q ss_pred             ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC---CCccHHHHHHHHHH
Q 014516          264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYV---GREALWLHRRFLSM  310 (423)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p---~neSaW~yrr~Ll~  310 (423)
                              |   .....+++.+++..+++..+|   .+..+|+.+..++.
T Consensus       231 --------~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~  269 (474)
T 4abn_A          231 --------G---QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK  269 (474)
T ss_dssp             --------T---CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred             --------c---cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence                    0   012357889999999999999   99999998776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.90  E-value=2.1e-07  Score=84.60  Aligned_cols=155  Identities=4%  Similarity=-0.117  Sum_probs=132.1

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC-CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP-KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP-K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      +.+..+|..++.+....+   .+++++..+..++..+| ++..+|..+..+...++.        +.+.+..+.++++.+
T Consensus         4 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~   72 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAK---NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKN   72 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhC
Confidence            345588999999888875   79999999999999999 999999999998888766        789999999999999


Q ss_pred             CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh-------hHHHHHHHHHHHhhhcccccCCCCCCCchhchH
Q 014516          206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN-------SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETY  278 (423)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~-------SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~  278 (423)
                      |.+..+|..++.+...++.  +.+.+..+.+.+..+|.|.       .+|..+..+....                    
T Consensus        73 p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~--------------------  130 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA--------------------  130 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred             cchHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh--------------------
Confidence            9999999999999988765  8899999999999999998       4566666555443                    


Q ss_pred             HHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHHH
Q 014516          279 QIWKEELDWNESLIKQYVG--REALWLHRRFLSMYLIK  314 (423)
Q Consensus       279 ~~~~eEL~~~~~~I~~~p~--neSaW~yrr~Ll~~l~~  314 (423)
                      ..+++.+++..+++..+|+  +..+|..+..+......
T Consensus       131 ~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          131 GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence            1378899999999999999  88999988877654333

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.90  E-value=1.5e-07  Score=91.30  Aligned_cols=166  Identities=9%  Similarity=-0.055  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++..+..++..+|++..+|+....+....+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~  149 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENE---NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH--------Q  149 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc--------H
Confidence            578999999999999999999999999998876   78999999999999999999999999988887765        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHH----------HHHHHhcChhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHR----------CWLVSFMTREQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNL  259 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR----------~wll~~~~~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~  259 (423)
                      .+.+.++.++++.+|.+..+|..+          ..+....  ..+++.+..+.+.+..+|.  +..+|..+..+.....
T Consensus       150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             HHHHHHHHHHHHHCHHHHCC-------------------CC--HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            888999999999999998888766          3333222  3478889999999999999  7788888777666531


Q ss_pred             hcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          260 EGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                                          .+++.+++..+++..+|.+..+|..+..++.
T Consensus       228 --------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          228 --------------------EFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                2678888899999999999988888766553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.90  E-value=7.3e-08  Score=87.22  Aligned_cols=165  Identities=10%  Similarity=-0.026  Sum_probs=140.0

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        39 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~  107 (243)
T 2q7f_A           39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGNVYVVKEM--------Y  107 (243)
T ss_dssp             ---CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc--------H
Confidence            356777788888899999999999999988875   78999999999999999999999999888877665        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      .+.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|.....+.....            
T Consensus       108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------  173 (243)
T 2q7f_A          108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANEG------------  173 (243)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC------------
Confidence            889999999999999999999999888877665  889999999999999999999988887776642            


Q ss_pred             CchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          272 GYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                              .+++.+.+..+++..+|.+..+|..+..+.
T Consensus       174 --------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          174 --------MLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             --------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence                    246778888899999999988887766554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.89  E-value=3.4e-08  Score=89.81  Aligned_cols=157  Identities=10%  Similarity=-0.042  Sum_probs=122.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNS----------------RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~----------------Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr  174 (423)
                      ..++++..+..++.++|++..+|..                ++.++...+   .+++++..+..++..+|++..+|..+.
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR---NYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4588999999999999999999999                999888876   799999999999999999999999999


Q ss_pred             HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      .++...+.        +++.+..+.++++.+|.|..+|..++.+....+............+.+..++ +..+|.++...
T Consensus        96 ~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~  166 (208)
T 3urz_A           96 EMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLS  166 (208)
T ss_dssp             HHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHH
T ss_pred             HHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence            99988876        7899999999999999999999999988755433222333444444443322 22345444443


Q ss_pred             HHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516          255 MLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                      ...+                    .-+++.+.+.+++|..+|+++
T Consensus       167 ~~~~--------------------~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          167 KLFT--------------------TRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHH--------------------HTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHc--------------------cCHHHHHHHHHHHHHhCCCHH
Confidence            3322                    237889999999999999754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.89  E-value=3.8e-07  Score=86.06  Aligned_cols=189  Identities=5%  Similarity=-0.094  Sum_probs=158.5

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++.++|++..+|.....++...+   .+++++..+..++..+|++..+|.....+....+.        
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------  174 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--------  174 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--------
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--------
Confidence            5688999999999999999999999999998876   78999999999999999999999998888777655        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc---------CCChhHHHHHHHHHHHhhhc
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH---------VADNSCFHYRRRLMLRNLEG  261 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d---------~~N~SaW~yR~~Ll~~l~~~  261 (423)
                      +++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+         +.+..+|..+..+.....  
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--  250 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--  250 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--
Confidence            6889999999999999999999999999887765  888999999999987         666778888887776541  


Q ss_pred             ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHH
Q 014516          262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLM  341 (423)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l  341 (423)
                                        .+++.+.+..+++..+|++..+|..+..+....        ++                  .
T Consensus       251 ------------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~------------------~  286 (330)
T 3hym_B          251 ------------------KYAEALDYHRQALVLIPQNASTYSAIGYIHSLM--------GN------------------F  286 (330)
T ss_dssp             ------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--------TC------------------H
T ss_pred             ------------------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh--------cc------------------H
Confidence                              267889999999999999999998876665321        11                  1


Q ss_pred             HHHHHHHHhhhccCccc
Q 014516          342 DHELCLVHSCSTTIADA  358 (423)
Q Consensus       342 ~~El~lv~~~~~~dp~D  358 (423)
                      .+=++..+.++..+|++
T Consensus       287 ~~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          287 ENAVDYFHTALGLRRDD  303 (330)
T ss_dssp             HHHHHHHHTTTTTCSCC
T ss_pred             HHHHHHHHHHHccCCCc
Confidence            12245666888899988

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.87  E-value=1.3e-07  Score=85.59  Aligned_cols=166  Identities=9%  Similarity=-0.013  Sum_probs=144.8

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++..+|++..+|.....+....+   .+++++..+..++..+|++..+|.....++...+.        
T Consensus        72 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------  140 (243)
T 2q7f_A           72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKE---MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------  140 (243)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--------
T ss_pred             CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------
Confidence            4588999999999999999999999999998875   78999999999999999999999999888877665        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.....           
T Consensus       141 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------  207 (243)
T 2q7f_A          141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE-----------  207 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcc-----------
Confidence            6889999999999999999999999888877654  788899999999999999999998888776642           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                               .+++.+++..+++..+|++..+|..+..+.
T Consensus       208 ---------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          208 ---------NREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             ---------CTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             ---------CHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence                     245778889999999999999998865553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.84  E-value=1.1e-07  Score=92.37  Aligned_cols=197  Identities=9%  Similarity=-0.067  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.+++.........    ...-......++++..+..++.++|++..+|+....++...+   .+++++..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~  156 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEAL  156 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc---cHHHHHHHH
Confidence            5788888888887643211000    000001234689999999999999999999999999998886   799999999


Q ss_pred             HHHHHhCCCchhHhHHH----------HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC--CchhchHHHHHHHhcCh
Q 014516          157 ALVLSYSPKSEQAWSHR----------RWVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hR----------rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~  224 (423)
                      ..++..+|++..+|..+          ..++...        ..+.+.+.++.++++.+|.  +..+|...+.+....+.
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~  228 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--------SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE  228 (365)
T ss_dssp             HHHHHHCHHHHCC-------------------CC--------HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC
Confidence            99999999999998876          2222222        2378999999999999999  88899998888877655


Q ss_pred             hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          225 EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       225 ~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                        +.+.+..+.+.+..+|.+..+|..+..+.....                    .+++.+.+..+++..+|++..+|+.
T Consensus       229 --~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~  286 (365)
T 4eqf_A          229 --FNRAIDAFNAALTVRPEDYSLWNRLGATLANGD--------------------RSEEAVEAYTRALEIQPGFIRSRYN  286 (365)
T ss_dssp             --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhcCCCchHHHHH
Confidence              889999999999999999999999998877642                    2678899999999999999999988


Q ss_pred             HHHHHH
Q 014516          305 RRFLSM  310 (423)
Q Consensus       305 rr~Ll~  310 (423)
                      +..++.
T Consensus       287 l~~~~~  292 (365)
T 4eqf_A          287 LGISCI  292 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.82  E-value=3.7e-08  Score=82.90  Aligned_cols=121  Identities=9%  Similarity=-0.010  Sum_probs=106.0

Q ss_pred             HHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516          158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW  237 (423)
Q Consensus       158 ~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~  237 (423)
                      .+..+||+...+|.-++..+.+.+.        +++.+....++++.+|.+..+|..++.+...++.  +.+.+..+++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a   73 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD--------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTC   73 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHH
Confidence            4556899999999999988887765        7899999999999999999999999999988876  89999999999


Q ss_pred             HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ++.||.+..+|..+..++..+.                    -+++.+++..+++..+|+|..++...+.+
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~~--------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAMR--------------------EWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999888752                    26889999999999999999998776544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.80  E-value=2.7e-08  Score=86.06  Aligned_cols=134  Identities=4%  Similarity=-0.110  Sum_probs=118.4

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++..+|++..+|.....+....+   .+++++..+..++..+|+++.+|..+..++..++.        
T Consensus        12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--------   80 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN--------   80 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--------
Confidence            3578899999999999999999999999988875   89999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH-HHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL-KKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL-~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      +++.+....++++.+|.+..+|...+.++...+.  +.+.. .++++.++.+|.|-.+|.-+..|+..
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            7899999999999999999999999998877654  34444 45799999999999999988887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.80  E-value=1.9e-06  Score=89.01  Aligned_cols=235  Identities=7%  Similarity=-0.062  Sum_probs=163.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++..+|++..+|+....+....+   .+++++.++..++..+|++..+|+....++.+.+.        
T Consensus       354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  422 (597)
T 2xpi_A          354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--------  422 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            3467888888888888888888888888777765   78888999999888899988888888877777655        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+.++.++++.+|.+..+|.....+....+.  +++.++.+++++..+|.|..+|.....++.+..           
T Consensus       423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------  489 (597)
T 2xpi_A          423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKS-----------  489 (597)
T ss_dssp             HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----------
Confidence            6788889999999999999999888888777654  788889999999999999888888877776531           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhh------cCCC-ccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQ------YVGR-EALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDH  343 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~------~p~n-eSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~  343 (423)
                               .+++.+++..+++..      +|.+ ..+|..+..++..    .    +.                  .++
T Consensus       490 ---------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~----g~------------------~~~  534 (597)
T 2xpi_A          490 ---------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----L----KM------------------YDA  534 (597)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----T----TC------------------HHH
T ss_pred             ---------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----h----cC------------------HHH
Confidence                     267778888888877      4544 4566665554422    0    11                  112


Q ss_pred             HHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhhhcchhhHHHHhhhcCcCccchhhhhhccCC
Q 014516          344 ELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKLRAGVGDVTRMLKRSCPDRSSLWDYLVGYHS  421 (423)
Q Consensus       344 El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w~~~~~~~~  421 (423)
                      =++..+.++..+|++.       .++..+-.+...   . | +.+     ++.+++.-.-..+|.-...|..+.+.+.
T Consensus       535 A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~---~-g-~~~-----~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          535 AIDALNQGLLLSTNDA-------NVHTAIALVYLH---K-K-IPG-----LAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHSSCCH-------HHHHHHHHHHHH---T-T-CHH-----HHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCh-------HHHHHHHHHHHH---h-C-CHH-----HHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            2344556666788872       233322222211   1 2 112     3444444444668887777777666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.77  E-value=6.6e-07  Score=85.08  Aligned_cols=171  Identities=11%  Similarity=-0.048  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc--------
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC--------  184 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~--------  184 (423)
                      ++++..+..++..+|++..+|..+..+....+   .+++++..+..++..+|.+..+|.....++...+...        
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   96 (359)
T 3ieg_A           20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK   96 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHH
Confidence            44555555555555555555555555554443   4455555555555555555555555554444443300        


Q ss_pred             -------------------------------C--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHH
Q 014516          185 -------------------------------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDEL  231 (423)
Q Consensus       185 -------------------------------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL  231 (423)
                                                     .  .....+.+.+.++.++++.+|.+..+|.....+....+.  +.+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~  174 (359)
T 3ieg_A           97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAI  174 (359)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred             HHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHH
Confidence                                           0  000123445555555555555555555555555544433  45555


Q ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          232 KKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       232 ~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ..+.+.+..+|.+..+|..+..+....                    .-+++.+.+..+++..+|.+..+|.+...+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (359)
T 3ieg_A          175 SDLKAASKLKSDNTEAFYKISTLYYQL--------------------GDHELSLSEVRECLKLDQDHKRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHTTCSCCHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            555555555555555555555444432                    125666777777777777777777665544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.76  E-value=2.9e-07  Score=85.05  Aligned_cols=165  Identities=7%  Similarity=-0.097  Sum_probs=142.1

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH----hHHHHHHHHHhhhccCh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA----WSHRRWVINMISRNCST  186 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~----W~hRrwll~~l~~~~~~  186 (423)
                      ..++++..+..++..+|++..+|..+..+....+   .+++++..+..++. .|++...    |..+..+....+.    
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~----   89 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA---KYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ----   89 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT---CHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh---hHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----
Confidence            4588999999999999999999999999888876   79999999999999 5555544    8888888877765    


Q ss_pred             hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHH-HHHHHhhhccccc
Q 014516          187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR-RLMLRNLEGFCYT  265 (423)
Q Consensus       187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~-~Ll~~l~~~~~~~  265 (423)
                          +.+.+..+.++++.+|.+..+|...+.+....+.  +++.+..+++.+..+|.+..+|..+. .+....       
T Consensus        90 ----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-------  156 (272)
T 3u4t_A           90 ----DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-------  156 (272)
T ss_dssp             ----HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-------
T ss_pred             ----HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-------
Confidence                7899999999999999999999999999888765  89999999999999999999999988 443321       


Q ss_pred             CCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          266 QDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       266 ~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                                    .+++.+++..+++..+|++..+|..+..+..
T Consensus       157 --------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          157 --------------EYVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             --------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence                          2678899999999999999999888766653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.76  E-value=3.5e-06  Score=80.05  Aligned_cols=139  Identities=14%  Similarity=0.040  Sum_probs=112.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCC---CchhHhHHHH------------H
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSP---KSEQAWSHRR------------W  175 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nP---K~y~~W~hRr------------w  175 (423)
                      ..++++.....++.++|++..+|.....+....+   .+++++..+..++..+|   ++..+|....            .
T Consensus        52 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (359)
T 3ieg_A           52 KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL  128 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999998876   78999999999999999   9999987663            2


Q ss_pred             HHHHhhhcc-------------C-h------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHH
Q 014516          176 VINMISRNC-------------S-T------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLD  229 (423)
Q Consensus       176 ll~~l~~~~-------------~-~------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~  229 (423)
                      ++...+...             + .            ....+.+.+..+.++++.+|.+..+|.....+....+.  +++
T Consensus       129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~  206 (359)
T 3ieg_A          129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD--HEL  206 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC--HHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHH
Confidence            222221110             0 0            01236788899999999999999999999988877665  889


Q ss_pred             HHHHHHHHHhccCCChhHHHHHHHH
Q 014516          230 ELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       230 EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      .+..+.+.+..+|.+..+|.+...+
T Consensus       207 A~~~~~~a~~~~~~~~~~~~~~~~~  231 (359)
T 3ieg_A          207 SLSEVRECLKLDQDHKRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHH
Confidence            9999999999999999988766543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=5.5e-07  Score=86.56  Aligned_cols=165  Identities=8%  Similarity=-0.035  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHc-------cCCcCC------HHHHHHHHHHHHH-hCCCchhHhHHHHHHHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KRLLPI------LMDELHLSALVLS-YSPKSEQAWSHRRWVIN  178 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~-------~~~~~~------~~~EL~~~~~lL~-~nPK~y~~W~hRrwll~  178 (423)
                      .+++..++.+|..+|.+..+|..+..++..       .+  ..      .++.+..+..++. .+|++..+|....-++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            688899999999999999999999988753       23  11      3789999999999 69999999999988887


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCch-hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ..+.        +++...+.+++++.+|.+.. +|.....+....+.  +++....+.+.+..+|.+.+.|.....+-..
T Consensus       111 ~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          111 SRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             hcCC--------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            7664        67888999999999999987 99988777766543  7788999999999999988887644333221


Q ss_pred             hhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          258 NLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ..+                   -+++......+++..+|++..+|.....+
T Consensus       181 ~~~-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~  212 (308)
T 2ond_A          181 CSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             TSC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcC-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            111                   25677788889999999999999765444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.74  E-value=2.3e-06  Score=82.23  Aligned_cols=164  Identities=8%  Similarity=-0.011  Sum_probs=136.3

Q ss_pred             chHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          111 LAIEVMIHSKALLLL--SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~--nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      ..+++++..+.++..  +|++.++|...+.++...+   .+++++..+..     |.+..+|..+..++.+++.      
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------  145 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLKLDR------  145 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC------
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC------
Confidence            358899999998876  6999999999999998876   78999988877     9999999999999888776      


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                        +++.+..+.++++.+|.+...-....|+--..+...+++.+...++++..+|.+..+|..+..++.++.         
T Consensus       146 --~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------  214 (291)
T 3mkr_A          146 --LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG---------  214 (291)
T ss_dssp             --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT---------
T ss_pred             --HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------
Confidence              688999999999999987644333445433333345889999999999999999999999998887752         


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                                 -+++..+...+++..+|+|..+|.++..++.
T Consensus       215 -----------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          215 -----------RWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             -----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                       2788899999999999999999999766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.73  E-value=1.5e-06  Score=81.74  Aligned_cols=167  Identities=8%  Similarity=-0.096  Sum_probs=135.3

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~  105 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  105 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC--------H
Confidence            578999999999999999999999999888875   78999999999999999999999999888877665        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHH----------H---hcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLV----------S---FMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll----------~---~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .+.+..+.++++.+|.+..+|....-..          .   ......+.+.+..+.+.+..+|.+..+|..+..+....
T Consensus       106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  185 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS  185 (327)
T ss_dssp             HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence            8899999999999999998887751111          1   12233578889999999999999999998888777654


Q ss_pred             hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          259 LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      .                    .+++.+++..+++..+|.+..+|..+..++
T Consensus       186 ~--------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  216 (327)
T 3cv0_A          186 N--------------------NYDSAAANLRRAVELRPDDAQLWNKLGATL  216 (327)
T ss_dssp             T--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             c--------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            1                    267888899999999999998888766554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.72  E-value=1.5e-06  Score=77.22  Aligned_cols=163  Identities=7%  Similarity=-0.041  Sum_probs=136.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc-CCcCCHHHHHHHHHHHHH--hCCCchhHhHHHHHHHHHhhhccChh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK-RLLPILMDELHLSALVLS--YSPKSEQAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~-~~~~~~~~EL~~~~~lL~--~nPK~y~~W~hRrwll~~l~~~~~~~  187 (423)
                      ..++++.....++..+|++..+|.....++... +   .+++.+..+..++.  .+|....+|.....++...+.     
T Consensus        57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  128 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN---RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-----  128 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----
T ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----
Confidence            358899999999999999999999999998887 6   78999999999999  778888999999888877665     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhhcccccC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV-ADNSCFHYRRRLMLRNLEGFCYTQ  266 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~-~N~SaW~yR~~Ll~~l~~~~~~~~  266 (423)
                         +++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+++.+..+| .+..+|.....+.... +      
T Consensus       129 ---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------  196 (225)
T 2vq2_A          129 ---FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-G------  196 (225)
T ss_dssp             ---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T------
T ss_pred             ---HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C------
Confidence               6889999999999999999999999888877655  7889999999999999 8888876555444332 1      


Q ss_pred             CCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          267 DNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                                   ..++...+...++..+|++..++.++.
T Consensus       197 -------------~~~~a~~~~~~~~~~~p~~~~~~~~l~  223 (225)
T 2vq2_A          197 -------------NAQAAYEYEAQLQANFPYSEELQTVLT  223 (225)
T ss_dssp             -------------CHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             -------------cHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence                         245667778888889999998877653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.71  E-value=1.4e-06  Score=88.52  Aligned_cols=162  Identities=7%  Similarity=-0.006  Sum_probs=142.8

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++.++|+ ..+|.....++...+   .+.+.+..+..++..+|++..+|..+..++...+.        
T Consensus       258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------  325 (537)
T 3fp2_A          258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKE---NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD--------  325 (537)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc---CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------
Confidence            347899999999999999 899999998887765   78999999999999999999999999999887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +...+..+.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.....           
T Consensus       326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------  392 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDRG-----------  392 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC-----------
Confidence            7899999999999999999999999999988765  889999999999999999999999988877642           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                               -+++.+.+..+++..+|.+..+|....
T Consensus       393 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~  419 (537)
T 3fp2_A          393 ---------DFDTAIKQYDIAKRLEEVQEKIHVGIG  419 (537)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred             ---------CHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence                     267888899999999998888775543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.71  E-value=3.8e-07  Score=95.25  Aligned_cols=163  Identities=9%  Similarity=-0.119  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++++.+..++..+|++..+|+....++...+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~   73 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------H   73 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            367888899999999999999999999998875   79999999999999999999999999999888765        7


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      ++.+..+.++++.+|.+..+|.....+....+.  +++.++.+++.++.+|.+..+|..+..+...+..-          
T Consensus        74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------  141 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW----------  141 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc----------
Confidence            899999999999999999999999999888765  88999999999999999999999888877764100          


Q ss_pred             CchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          272 GYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                             .-+++.+++..+++..+|++.++|+.
T Consensus       142 -------g~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          142 -------RALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             -------TTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             -------ccHHHHHHHHHHHHhcCCcccChHHH
Confidence                   12677888999999999999888854

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.70  E-value=5.6e-07  Score=81.73  Aligned_cols=161  Identities=5%  Similarity=-0.042  Sum_probs=114.4

Q ss_pred             chHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH----------------------
Q 014516          111 LAIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKRLLPILMDELHLSALVLS----------------------  161 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~-------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~----------------------  161 (423)
                      ..++++.....++.++|++       ..+|.....+....+   .+++++..+..++.                      
T Consensus        53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  129 (258)
T 3uq3_A           53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE  129 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence            3578888888888888877       688888888888775   67788888888887                      


Q ss_pred             ----hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516          162 ----YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW  237 (423)
Q Consensus       162 ----~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~  237 (423)
                          .+|.+..+|..+..++...+.        +.+.+..+.++++.+|.+..+|...+.+....+.  +++.+..+.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a  199 (258)
T 3uq3_A          130 AEAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKA  199 (258)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence                556666666666666655543        5677777777777777777777777777666544  66777777777


Q ss_pred             HhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc------CCCccHHHH
Q 014516          238 SGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY------VGREALWLH  304 (423)
Q Consensus       238 i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~------p~neSaW~y  304 (423)
                      +..+|.+..+|..+..+...+.                    -+++.+++..+++..+      |.|..++..
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVK--------------------EYASALETLDAARTKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence            7777777777777766665531                    1456666667777766      666665554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.70  E-value=1.4e-06  Score=79.51  Aligned_cols=165  Identities=8%  Similarity=-0.043  Sum_probs=142.3

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|.....+....+   .+++++..+..++..+|.+..+|.....++...+.        +
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~  121 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEM---EPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR--------Y  121 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH--------H
Confidence            467889999999999999999999999988875   78999999999999999999999999888877655        6


Q ss_pred             HHHHHHHHHHHH--hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516          192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN  269 (423)
Q Consensus       192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~  269 (423)
                      .+.+.++.++++  .+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|.....+.....          
T Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------  189 (252)
T 2ho1_A          122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKER----------  189 (252)
T ss_dssp             HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----------
Confidence            889999999999  899999999999988877655  789999999999999999999888777766531          


Q ss_pred             CCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          270 SSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                -+++.+.+..+++..+|.+..+|.....+.
T Consensus       190 ----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          190 ----------EYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             ----------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence                      267788899999999999988877654443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.70  E-value=1.6e-06  Score=79.26  Aligned_cols=162  Identities=9%  Similarity=-0.061  Sum_probs=141.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH--hCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS--YSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~--~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      ..++++.....++..+|++..+|.....++...+   .+++++.++..++.  .+|.+..+|.....++...+.      
T Consensus        86 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------  156 (252)
T 2ho1_A           86 EPKLADEEYRKALASDSRNARVLNNYGGFLYEQK---RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK------  156 (252)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC------
T ss_pred             CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC------
Confidence            4688999999999999999999999999988875   78999999999999  899999999999888877665      


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                        +++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+.+.+..+|.+..+|..+..+.....         
T Consensus       157 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------  223 (252)
T 2ho1_A          157 --PAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE---------  223 (252)
T ss_dssp             --HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT---------
T ss_pred             --HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc---------
Confidence              6889999999999999999999988888877654  788999999999999999998887777666531         


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                                 -+++..++..+++..+|++..++.++
T Consensus       224 -----------~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          224 -----------DRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             -----------CHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence                       25678888999999999999887764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.70  E-value=1.6e-06  Score=83.47  Aligned_cols=91  Identities=9%  Similarity=0.006  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++..+..++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        80 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--------~  148 (368)
T 1fch_A           80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESL--------Q  148 (368)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence            456666666666777777777776666666654   56666777777777777776666666666655443        3


Q ss_pred             HHHHHHHHHHHHhcCCCchhch
Q 014516          192 ERESELVEKIAERSKMNYRAWN  213 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~  213 (423)
                      .+.+..+.++++.+|.+..+|.
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~~  170 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLVT  170 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC
T ss_pred             HHHHHHHHHHHHhCcCcHHHHH
Confidence            4444455555555555444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.69  E-value=1.4e-06  Score=89.93  Aligned_cols=167  Identities=6%  Similarity=-0.074  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++.+..++.++|++..+|+....++...+   .+++++.++..++..+|++..+|+....++.+.+.        
T Consensus       388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  456 (597)
T 2xpi_A          388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--------  456 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------
Confidence            4588999999999999999999999999888876   78999999999999999999999999988887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------cCCC-hhHHHHHHHHHHHhhhccc
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------HVAD-NSCFHYRRRLMLRNLEGFC  263 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------d~~N-~SaW~yR~~Ll~~l~~~~~  263 (423)
                      +++.+.+..++++.+|.+..+|.....++...+.  +++.++.+++++..      +|.+ ..+|..+..++.+..    
T Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g----  530 (597)
T 2xpi_A          457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK----  530 (597)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc----
Confidence            7899999999999999999999999999888765  88899999999988      6665 578888887776641    


Q ss_pred             ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                                      .+++.+++..+++..+|.+..+|..+..++.
T Consensus       531 ----------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  561 (597)
T 2xpi_A          531 ----------------MYDAAIDALNQGLLLSTNDANVHTAIALVYL  561 (597)
T ss_dssp             ----------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence                            3678899999999999999999988766653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.69  E-value=2e-06  Score=82.86  Aligned_cols=196  Identities=10%  Similarity=-0.037  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.++++........    ...-......++++.....++.++|++..+|..+..+....+   .+++++..+
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~  155 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEIL  155 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence            4778888888877632111000    000001234578999999999999999999999999998876   789999999


Q ss_pred             HHHHHhCCCchhHhHHH----------------HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC--CchhchHHHHH
Q 014516          157 ALVLSYSPKSEQAWSHR----------------RWVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWL  218 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hR----------------rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wl  218 (423)
                      ..++..+|++..+|..+                ..++ ..        ..+.+.+.++.++++.+|.  +..+|.....+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~  226 (368)
T 1fch_A          156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD--------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  226 (368)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHH-HH--------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc--------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence            99999999999999754                1122 22        2378899999999999999  78888888888


Q ss_pred             HHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516          219 VSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGR  298 (423)
Q Consensus       219 l~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~n  298 (423)
                      ....+.  +++.+..+.+.+..+|.+..+|..+..+.....                    -+++.+.+..+++..+|.+
T Consensus       227 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~~~~  284 (368)
T 1fch_A          227 FNLSGE--YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--------------------QSEEAVAAYRRALELQPGY  284 (368)
T ss_dssp             HHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCc
Confidence            877655  889999999999999999999999988877642                    2678899999999999999


Q ss_pred             ccHHHHHHHHHH
Q 014516          299 EALWLHRRFLSM  310 (423)
Q Consensus       299 eSaW~yrr~Ll~  310 (423)
                      ..+|..+..+..
T Consensus       285 ~~~~~~l~~~~~  296 (368)
T 1fch_A          285 IRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888766653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.69  E-value=9.7e-07  Score=80.13  Aligned_cols=174  Identities=10%  Similarity=-0.048  Sum_probs=140.3

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc-------hhHhHHHHHHHHHhhhc
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS-------EQAWSHRRWVINMISRN  183 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~-------y~~W~hRrwll~~l~~~  183 (423)
                      ..++++.....++..+ ++..+|..+..+....+   .+++++..+..++..+|++       ..+|.....++..++..
T Consensus        20 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (258)
T 3uq3_A           20 QFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL   95 (258)
T ss_dssp             CHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence            3588999999999999 99999999999998886   7999999999999999887       68888888887766542


Q ss_pred             cCh------------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          184 CST------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       184 ~~~------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      ...                  ....+.+.+..+.+++..+|.+..+|...+.+....+.  +.+.+..+++.+..+|.+.
T Consensus        96 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~  173 (258)
T 3uq3_A           96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDA  173 (258)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccH
Confidence            110                  00113344455566666899999999999998877755  8899999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          246 SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       246 SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      .+|..+..+.....                    -+++.+.+..+++..+|++..+|..+..++.
T Consensus       174 ~~~~~l~~~~~~~~--------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          174 RGYSNRAAALAKLM--------------------SFPEAIADCNKAIEKDPNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--------------------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            99999888776642                    2678899999999999999998888766553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.67  E-value=1.8e-06  Score=85.81  Aligned_cols=167  Identities=10%  Similarity=0.016  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH------------HHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR------------WVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr------------wll~~  179 (423)
                      .++++..+..++..+|++..+|+....+....+   .+++++..+..++..+|.+..+|....            .++..
T Consensus       193 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (450)
T 2y4t_A          193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLG---DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR  269 (450)
T ss_dssp             GGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666677777777777777777777666654   667777777777777777777776542            22222


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCC----chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMN----YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN----Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      .+        .+.+.+.++.++++.+|.+    ..+|.....++...+.  +.+.+..+.+++..+|.+..+|..+..++
T Consensus       270 ~g--------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          270 DG--------RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HT--------CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cC--------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            22        2678889999999999998    4467777777776654  88999999999999999999999999888


Q ss_pred             HHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516          256 LRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY  311 (423)
Q Consensus       256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (423)
                      ....                    .+++.+.+..+++..+|++..+|..+..+...
T Consensus       340 ~~~~--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          340 LIEE--------------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHTT--------------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHhc--------------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            7642                    36788999999999999999999988766543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.66  E-value=1.1e-07  Score=83.23  Aligned_cols=113  Identities=10%  Similarity=-0.048  Sum_probs=104.3

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHH
Q 014516          119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV  198 (423)
Q Consensus       119 t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~  198 (423)
                      ...++.++|++..+|..++.++...+   .+++++..+..++..+|+++.+|.....++..++.        +++.+..+
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~   93 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--------FQQAADLY   93 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence            45677899999999999999998876   89999999999999999999999999999998876        78999999


Q ss_pred             HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      .++++.+|.|..+|.+.+-++..++.  +++.+..+++.+..+|..
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999998876  889999999999998864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.66  E-value=1.2e-06  Score=75.05  Aligned_cols=156  Identities=9%  Similarity=-0.031  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|.....+....+   ..++.+..+..++..+|.+..+|.....++...+.        +
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~   92 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG---AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK--------Y   92 (186)
T ss_dssp             HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------H
Confidence            478888999999999999999999999888775   78999999999999999999999999888877665        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      .+.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|.....+.....            
T Consensus        93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------  158 (186)
T 3as5_A           93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG------------  158 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------
T ss_pred             HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC------------
Confidence            888999999999999999999999988877655  788999999999999999988888877766531            


Q ss_pred             CchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          272 GYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                              .+++.+.+..+++..+|++..
T Consensus       159 --------~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          159 --------RHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             --------CHHHHHHHHHHHHHHHHCCCG
T ss_pred             --------CHHHHHHHHHHHHHcCCCchh
Confidence                    267788888888888888754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.66  E-value=1.9e-07  Score=80.55  Aligned_cols=134  Identities=9%  Similarity=-0.038  Sum_probs=115.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      .++++.+..+..++..+|+++.+|.+...+....+.        ++..+..+.++++.+|+|..+|...+.+...++.  
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--   80 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------YDLAKKYICTYINVQERDPKAHRFLGLLYELEEN--   80 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence            367889999999999999999999998888877765        7899999999999999999999999999988865  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHH-HHHHHHHhhcCCCccHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEEL-DWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL-~~~~~~I~~~p~neSaW~yr  305 (423)
                      +++.+....+.++.+|.|..+|..+..++.....                    +.+.. .++++++..+|+|..+|..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------------~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--------------------TDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--------------------SSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            8899999999999999999999999988877522                    12233 35688999999999999887


Q ss_pred             HHHHH
Q 014516          306 RFLSM  310 (423)
Q Consensus       306 r~Ll~  310 (423)
                      ..|+.
T Consensus       141 ~~ll~  145 (150)
T 4ga2_A          141 EQLLD  145 (150)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.66  E-value=3.3e-06  Score=83.81  Aligned_cols=167  Identities=7%  Similarity=-0.100  Sum_probs=138.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|++..+|+.+..++...+   .+++++..+..++..+|++..+|.....++...+.        
T Consensus       158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  226 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD--------  226 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            4578899999999999999999999999998876   78899999999999999999999999998887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHH------------HHHHHhcChhhHHHHHHHHHHHHhccCCChh----HHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHR------------CWLVSFMTREQVLDELKKSRNWSGLHVADNS----CFHYRRRL  254 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR------------~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S----aW~yR~~L  254 (423)
                      +++.+.++.++++.+|.+..+|...            ..+....+  .+.+.+..+.+++..+|.|..    +|..+..+
T Consensus       227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~  304 (450)
T 2y4t_A          227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG--RYTDATSKYESVMKTEPSIAEYTVRSKERICHC  304 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            6889999999999999999988765            33333333  478899999999999999855    44444444


Q ss_pred             HHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          255 MLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +.+.                    ..+++.+.++.+++..+|++..+|..+..++.
T Consensus       305 ~~~~--------------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          305 FSKD--------------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHTT--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHC--------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4332                    13678899999999999999999988776653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.63  E-value=1.8e-06  Score=81.32  Aligned_cols=200  Identities=11%  Similarity=-0.065  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCC----CCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGNF----SGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~----~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.+++.........    ...-......++++.....++.++|++..+|.....+....+   .+++++..+
T Consensus        36 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~  112 (327)
T 3cv0_A           36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH---NANAALASL  112 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence            4677777777766532210000    000001234588999999999999999999999999988875   789999999


Q ss_pred             HHHHHhCCCchhHhHHHHHHH----------HH-hhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516          157 ALVLSYSPKSEQAWSHRRWVI----------NM-ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hRrwll----------~~-l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (423)
                      ..++..+|++..+|....-.+          .. +..    ....+.+.+.++.++++.+|.+..+|.....+....+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-  187 (327)
T 3cv0_A          113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN-  187 (327)
T ss_dssp             HHHHHTSTTTTTC--------------------CCTT----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-
Confidence            999999999999887761111          11 000    01237889999999999999999999999998877765 


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                       +++.+..+.+.+..+|.+..+|..+..+.....                    .+++.+.+..+++..+|.+..+|..+
T Consensus       188 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          188 -YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--------------------RPQEALDAYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence             889999999999999999999999888877641                    26788899999999999999988876


Q ss_pred             HHHH
Q 014516          306 RFLS  309 (423)
Q Consensus       306 r~Ll  309 (423)
                      ..+.
T Consensus       247 ~~~~  250 (327)
T 3cv0_A          247 AVSY  250 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.63  E-value=5.6e-07  Score=77.66  Aligned_cols=122  Identities=8%  Similarity=-0.146  Sum_probs=108.7

Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHH
Q 014516          119 SKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV  198 (423)
Q Consensus       119 t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~  198 (423)
                      +..++.++|++..+|..+..++...+   .+.+++..+..++..+|.++.+|..+..++..++.        +++.+..+
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~   78 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------YDLAIHSY   78 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--------HHHHHHHH
Confidence            56778899999999999999988875   79999999999999999999999999999988776        78999999


Q ss_pred             HHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHH
Q 014516          199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRR  253 (423)
Q Consensus       199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~  253 (423)
                      .+++..+|.+..+|.+.+.++..++.  +++.+..+.+.+..+|.|-.....+..
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQXGE--LAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            99999999999999999999988876  789999999999999987655444443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.61  E-value=1.8e-06  Score=86.53  Aligned_cols=223  Identities=4%  Similarity=-0.166  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCC---------CC-----CCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCc
Q 014516           81 VYKAAKHAFISALRQYKTPGNFSG---------KS-----QDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLL  146 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~~~---------~~-----~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~  146 (423)
                      -|..|...|.+++..++.......         .+     ......++++.++.++|.++|++..++.....+...++..
T Consensus       109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            367777777777665443322110         00     0112357899999999999999999999888775443212


Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      ...++.+..+..++..+|++..++......+..+....    ..+.+.+.++.++++.+|.+..+|...+.+....+.  
T Consensus       189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~----~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--  262 (472)
T 4g1t_A          189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG----EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--  262 (472)
T ss_dssp             CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--
T ss_pred             hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--
Confidence            34567889999999999999999999888777665432    225677889999999999999999999999888765  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                      +.+.+....+.++.+|.+..+|+.+..+........... .....+........++..+....+++..+|.+..+|..+.
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg  341 (472)
T 4g1t_A          263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL-RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA  341 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence            889999999999999999999988876654321110000 0000001112234567788888999999999999998876


Q ss_pred             HHHH
Q 014516          307 FLSM  310 (423)
Q Consensus       307 ~Ll~  310 (423)
                      .+..
T Consensus       342 ~~~~  345 (472)
T 4g1t_A          342 SLHA  345 (472)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.60  E-value=3e-06  Score=77.96  Aligned_cols=158  Identities=8%  Similarity=-0.046  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChh
Q 014516          112 AIEVMIHSKALLLL----SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       112 ~~~~L~~t~~lLl~----nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~  187 (423)
                      .++++..+..++..    +|.+..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.     
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-----   92 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-----   92 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-----
Confidence            34555555555554    3456667777777666654   56777777777777777777777777766665544     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                         +.+.+.++.++++.+|.+..+|...+.+....+.  +++.+..+.+.+..+|.+.......... ...         
T Consensus        93 ---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~---------  157 (275)
T 1xnf_A           93 ---FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK---------  157 (275)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred             ---HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence               5667777777777777777777777777666544  6667777777777777766443333222 110         


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWL  303 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~  303 (423)
                                 .-+++.+.+..+++...|.+...|.
T Consensus       158 -----------~~~~~A~~~~~~~~~~~~~~~~~~~  182 (275)
T 1xnf_A          158 -----------LDEKQAKEVLKQHFEKSDKEQWGWN  182 (275)
T ss_dssp             -----------HCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred             -----------cCHHHHHHHHHHHHhcCCcchHHHH
Confidence                       1245566666666666676655543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.8e-06  Score=86.86  Aligned_cols=165  Identities=8%  Similarity=-0.085  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++.++|++..+|.....++...+   .+++.+..+..++..+|.+..+|.....++...+.        +
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~  388 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYREN---KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--------F  388 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--------H
Confidence            356666777777777777777777776666554   67888888888888888888888888887777655        6


Q ss_pred             HHHHHHHHHHHHhcCCCch------hchHHHHHHHh---cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcc
Q 014516          192 ERESELVEKIAERSKMNYR------AWNHRCWLVSF---MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGF  262 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~---~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~  262 (423)
                      ++.+..+.++++.+|.+..      +|...+.+...   .+.  +++.+..+.+.+..+|.+..+|..+..+.....   
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g---  463 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN--FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE---  463 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc---
Confidence            8889999999999999866      89999888877   654  889999999999999999999988888776642   


Q ss_pred             cccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          263 CYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                       .+++.+++..+++..+|++..+|....++.
T Consensus       464 -----------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          464 -----------------DIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             -----------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             -----------------CHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence                             267889999999999999999999876654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.1e-06  Score=72.27  Aligned_cols=118  Identities=8%  Similarity=-0.024  Sum_probs=102.4

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      |+...+|..++..+...+   .+++++..+..++..+|++..+|..+..++..++.        +.+.+..+.++++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p   69 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKS---DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKDP   69 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence            456778888888887775   78999999999999999999999999999888766        7889999999999999


Q ss_pred             CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc------CCChhHHHHHHHHHHH
Q 014516          207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH------VADNSCFHYRRRLMLR  257 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d------~~N~SaW~yR~~Ll~~  257 (423)
                      .+..+|..++.+...++.  +.+.+..+.+.+..+      |.|..++.....+..+
T Consensus        70 ~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           70 NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999888765  788999999999999      8888888777766544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.57  E-value=4.5e-06  Score=80.09  Aligned_cols=164  Identities=5%  Similarity=-0.115  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh-HhHHHHHHHHHhhhccChhHH
Q 014516          112 AIEVMIHSKALLL-LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ-AWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       112 ~~~~L~~t~~lLl-~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~-~W~hRrwll~~l~~~~~~~~~  189 (423)
                      .++++..++.++. ++|++..+|.....++...+   .+++....++.++..+|+++. +|.....++.+.+.       
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------  149 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-------  149 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-------
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-------
Confidence            3789999999999 79999999999999998875   789999999999999999998 99998888777655       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHh-cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSF-MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~-~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                       +++...+..++++.+|.++++|.-...+-.. .+  ..+.....+++.+..+|.+..+|.....++.+..         
T Consensus       150 -~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------  217 (308)
T 2ond_A          150 -IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---------  217 (308)
T ss_dssp             -HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred             -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---------
Confidence             6788999999999999999998755544322 23  3778899999999999999999987776665431         


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhh---cCC-CccHHHHHHHH
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQ---YVG-REALWLHRRFL  308 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~---~p~-neSaW~yrr~L  308 (423)
                                 -+++......+++..   .|+ +..+|.....+
T Consensus       218 -----------~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~  250 (308)
T 2ond_A          218 -----------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             -----------CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence                       256677788888885   553 77788765443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.56  E-value=1.3e-05  Score=74.46  Aligned_cols=180  Identities=9%  Similarity=-0.097  Sum_probs=135.1

Q ss_pred             chHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhcc
Q 014516          111 LAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNC  184 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~---~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~  184 (423)
                      ..++++..+..++..+|++   ..+|..++.+....+   .+.+++..+..++..+|++   ..++..+..+........
T Consensus        30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~  106 (261)
T 3qky_A           30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY  106 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred             CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence            3588999999999999999   899999999998886   8999999999999998865   567778887776611000


Q ss_pred             ChhHHhHHHHHHHHHHHHHhcCCCchhc-----------------hHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh--
Q 014516          185 STLQWIIERESELVEKIAERSKMNYRAW-----------------NHRCWLVSFMTREQVLDELKKSRNWSGLHVADN--  245 (423)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW-----------------~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~--  245 (423)
                      ..-...+.+.+..+.++++.+|.+-.++                 ...+.+....+.  +.+.+..+++.+..+|.+.  
T Consensus       107 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~  184 (261)
T 3qky_A          107 ELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWA  184 (261)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTH
T ss_pred             cccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchH
Confidence            0001127899999999999999998888                 555666655544  8899999999999999854  


Q ss_pred             -hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          246 -SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       246 -SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                       .++..+..+...+.....          ......-+++.+....+++..+|++..+..-+
T Consensus       185 ~~a~~~l~~~~~~~g~~~~----------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          185 DDALVGAMRAYIAYAEQSV----------RARQPERYRRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTSC----------GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccch----------hhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence             477777776665421100          00112457889999999999999987655443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.55  E-value=5e-07  Score=76.66  Aligned_cols=124  Identities=10%  Similarity=-0.163  Sum_probs=107.5

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516          118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (423)
Q Consensus       118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (423)
                      ....++.++|++..++..+...+...+   .+.+++..+..++..+|+++.+|.....++...+.        +++.+..
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~   74 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAG---KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------YEQALQS   74 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------HHHHHHH
Confidence            355677889999999999999888775   79999999999999999999999999999888776        7899999


Q ss_pred             HHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +.++++.+|.+..+|.+.+.++..++.  +++.+..+++.+..+|.|-..+..+..+
T Consensus        75 ~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           75 YSYGALMDINEPRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999988876  8899999999999999887665554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.55  E-value=1.3e-05  Score=80.32  Aligned_cols=204  Identities=7%  Similarity=-0.145  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCC-CCCC------------CccchHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 014516           80 PVYKAAKHAFISALRQYKTPGNFS-GKSQ------------DDTLAIEVMIHSKALLLLS--------CDFATAWNSRKL  138 (423)
Q Consensus        80 ~lY~~A~~~f~~~l~~y~~~~~~~-~~~~------------~~~~~~~~L~~t~~lLl~n--------Pe~~TaWn~Rk~  138 (423)
                      .-|.+|...|.+++..++...... ....            .....++++....+++.++        +++..+++.++.
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~  144 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW  144 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence            357888888888776433211100 0000            1123577888888888874        456788888887


Q ss_pred             HHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHH
Q 014516          139 IVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL  218 (423)
Q Consensus       139 lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl  218 (423)
                      .+...+ ...+++++.++..++..+|+++.+|.....+...+.....     .++.++.+.++++.+|.+..++......
T Consensus       145 ~~~~~~-~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-----~~~al~~~~~al~l~p~~~~~~~~l~~~  218 (472)
T 4g1t_A          145 TRLKCG-GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-----SQNAIDPLRQAIRLNPDNQYLKVLLALK  218 (472)
T ss_dssp             HHHHHC-TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-----CCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHc-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-----HHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence            776554 3468999999999999999999999888877766654321     2456788899999999999999998887


Q ss_pred             HHhcCh--hhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC
Q 014516          219 VSFMTR--EQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYV  296 (423)
Q Consensus       219 l~~~~~--~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p  296 (423)
                      +..+..  ....+.+..+++.+..+|.+..+|..+..+.....                    .+++.+++..+++..+|
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~--------------------~~~~A~~~~~~al~~~p  278 (472)
T 4g1t_A          219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD--------------------EPDKAIELLKKALEYIP  278 (472)
T ss_dssp             HHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHST
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC--------------------chHHHHHHHHHHHHhCC
Confidence            766643  23567788999999999999999999988877642                    36788999999999999


Q ss_pred             CCccHHHHHHHHH
Q 014516          297 GREALWLHRRFLS  309 (423)
Q Consensus       297 ~neSaW~yrr~Ll  309 (423)
                      ++..+|+.+..+.
T Consensus       279 ~~~~~~~~lg~~y  291 (472)
T 4g1t_A          279 NNAYLHCQIGCCY  291 (472)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH
Confidence            9999998876554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.53  E-value=2.8e-06  Score=86.25  Aligned_cols=178  Identities=6%  Similarity=-0.055  Sum_probs=144.6

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ...++++..+..++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.       
T Consensus       290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------  359 (537)
T 3fp2_A          290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-------  359 (537)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-------
T ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence            34588999999999999999999999999998876   79999999999999999999999999999888766       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHH------HHHHHhhhccc
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR------RLMLRNLEGFC  263 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~------~Ll~~l~~~~~  263 (423)
                       +.+.+.++.++++.+|.+..+|...+.+....+.  +.+.+..+.+.+..+|.+...|....      .++......  
T Consensus       360 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--  434 (537)
T 3fp2_A          360 -FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ--  434 (537)
T ss_dssp             -HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred             -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc--
Confidence             7899999999999999999999999999988765  88899999999999887766654332      333322000  


Q ss_pred             ccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          264 YTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                         ..     .......+++.+.+..+++..+|++..+|..+..+..
T Consensus       435 ---~~-----~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  473 (537)
T 3fp2_A          435 ---DP-----TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL  473 (537)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ---cc-----hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence               00     0000135788999999999999999999888766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.53  E-value=6.7e-06  Score=82.64  Aligned_cols=165  Identities=9%  Similarity=0.006  Sum_probs=142.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|+ ..+|..+..+....+   .+++++..+..++..+|++..+|..+..++...+.        
T Consensus       252 ~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------  319 (514)
T 2gw1_A          252 DPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN---DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN--------  319 (514)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS---CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC--------
Confidence            468899999999999999 999999999988876   67889999999999999999999999998887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+..+.++++.+|.+..+|.....+....+.  +.+.+..+.+.+..+|.+..+|..+..+.....           
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------  386 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN-----------  386 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-----------
Confidence            5788899999999999999999998888776654  889999999999999999999999888777642           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCcc------HHHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREA------LWLHRRFLS  309 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neS------aW~yrr~Ll  309 (423)
                               .+++.+.+..+++..+|.+..      +|..+..++
T Consensus       387 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  422 (514)
T 2gw1_A          387 ---------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL  422 (514)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence                     267788889999999999876      777765544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.51  E-value=2.1e-06  Score=74.25  Aligned_cols=117  Identities=13%  Similarity=-0.012  Sum_probs=104.3

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      +++...+|..+..++...+   .+++++..+..++..+|++..+|..+..++..++.        +.+.+..+.++++.+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~   75 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARK---EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD   75 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC
Confidence            4667788889998888775   79999999999999999999999999999988776        789999999999999


Q ss_pred             CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      |.+..+|..+..++..++.  +++.+..+.+.+..+|.|..+|..+....
T Consensus        76 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           76 PKYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999988765  88999999999999999999988776553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.50  E-value=1.8e-06  Score=79.64  Aligned_cols=168  Identities=6%  Similarity=-0.143  Sum_probs=122.7

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH-HHHHHhhhccChhHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR-WVINMISRNCSTLQW  189 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr-wll~~l~~~~~~~~~  189 (423)
                      ..++++.....++.++|++..+|.....+....+   .+++++..+..++..+|.+..+|..+. .+.... .       
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~-------  157 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E-------  157 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C-------
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H-------
Confidence            3578888889999999999999998888888775   788889999999988999999988888 444432 2       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh-HHHHHHHHHHHHhcc---CCC-----hhHHHHHHHHHHHhhh
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ-VLDELKKSRNWSGLH---VAD-----NSCFHYRRRLMLRNLE  260 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~-~~~EL~~~~k~i~~d---~~N-----~SaW~yR~~Ll~~l~~  260 (423)
                       +++.+..+.++++.+|.+..+|..+..+...++... +...+...++.+...   +..     ..+|.+...+....  
T Consensus       158 -~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  234 (272)
T 3u4t_A          158 -YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN--  234 (272)
T ss_dssp             -HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT--
T ss_pred             -HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc--
Confidence             678888889999999999888888888877765311 333455555555543   432     14555555554442  


Q ss_pred             cccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          261 GFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                                        .-+++.+++..+++..+|+|..+|-..+.+..
T Consensus       235 ------------------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          235 ------------------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             ------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             ------------------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence                              13688999999999999999999988766543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.45  E-value=3.7e-07  Score=98.35  Aligned_cols=132  Identities=6%  Similarity=-0.199  Sum_probs=121.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++.++.++.++|++..+|+.++.++...+   .+++++..+..++..+|+++.+|..+..++..++.        
T Consensus       448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--------  516 (681)
T 2pzi_A          448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--------  516 (681)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------
T ss_pred             CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------
Confidence            4588999999999999999999999999998876   79999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML  256 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~  256 (423)
                      +++ +..+.++++.+|.+..+|..++.++..++.  +++.++.+++.+..+|.+..+|..+..++.
T Consensus       517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~~~~~~~  579 (681)
T 2pzi_A          517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEVPPTSRHFTTARLTSAVTLL  579 (681)
T ss_dssp             CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred             hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence            456 889999999999999999999999988776  889999999999999999999998887753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.43  E-value=1.3e-06  Score=76.35  Aligned_cols=113  Identities=9%  Similarity=-0.093  Sum_probs=101.8

Q ss_pred             HHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516          157 ALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN  236 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k  236 (423)
                      ..++..+|++..+|.....++.+.+.        +++.+.++.++++.+|.|..+|...+.++..++.  +++.+..+.+
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~Ai~~~~~   95 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGR--------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--FQQAADLYAV   95 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence            56677899999999999999988776        7899999999999999999999999999988876  8999999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516          237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       237 ~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                      .+..+|.|..+|.++..++..+.                    -+++.+.+..+++..+|+..
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg--------------------~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLK--------------------APLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCCCHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999888752                    26889999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.40  E-value=1.7e-05  Score=71.68  Aligned_cols=115  Identities=3%  Similarity=-0.053  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH----------------HHHHHHHhhhccChhHHhHHH
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH----------------RRWVINMISRNCSTLQWIIER  193 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h----------------Rrwll~~l~~~~~~~~~~~~~  193 (423)
                      ...+..++..+...+   .+++++..+..++..+|++..+|..                +..++...+.        +++
T Consensus         4 ~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~   72 (208)
T 3urz_A            4 VDEMLQKVSAAIEAG---QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDK   72 (208)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHH
Confidence            344556666666654   7999999999999999999999999                8888777665        789


Q ss_pred             HHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          194 ESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      .+..+.++++.+|.+..+|..++.+....+.  +++.+..+++.+..+|.|..+|..+..+...
T Consensus        73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999887765  8899999999999999999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.37  E-value=6.8e-06  Score=70.72  Aligned_cols=124  Identities=6%  Similarity=-0.125  Sum_probs=107.1

Q ss_pred             HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      .+..++..+|++..+|.....++...+.        +.+.+....+++..+|.|..+|..++.+....+.  +++.+..+
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~   78 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGX--------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSY   78 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence            3567888999999999999988887765        7899999999999999999999999999988765  89999999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      .+.+..+|.|..+|.++..++..+.                    -+++.+.+..+++..+|++......+..+
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~  132 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQXG--------------------ELAEAESGLFLAQELIANXPEFXELSTRV  132 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence            9999999999999999998887652                    26788999999999999988776554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.36  E-value=0.0001  Score=67.45  Aligned_cols=127  Identities=8%  Similarity=-0.081  Sum_probs=101.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++.++|++..+|+....+....+   .+++++.++..++..+|++..+|.....++...+.        
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------  126 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--------  126 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--------
Confidence            4578899999999999999999999999888875   78999999999999999999999999888887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYR  251 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR  251 (423)
                      +.+.+.++.++++.+|.+..+..........   ..+.+.+..+.+.+..++.+...|...
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~  184 (275)
T 1xnf_A          127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK---LDEKQAKEVLKQHFEKSDKEQWGWNIV  184 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHSCCCSTHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            6788888888999998887555444333221   346777888888888888887766533

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.31  E-value=8.6e-06  Score=70.83  Aligned_cols=126  Identities=6%  Similarity=-0.059  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHH-HHHhhhccChhHHh
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWV-INMISRNCSTLQWI  190 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwl-l~~l~~~~~~~~~~  190 (423)
                      .++++.....++..+|++..+|.....+....+   .+.+++..+..++..+|.++.+|.....+ ....+.        
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~--------   94 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ--------   94 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC--------
Confidence            456778889999999999999999999998875   79999999999999999999999999888 444443        


Q ss_pred             H--HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516          191 I--ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY  250 (423)
Q Consensus       191 ~--~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y  250 (423)
                      +  .+.+..+.++++.+|.+..+|...+.+....+.  +.+.+..+.+.+..+|.|...+..
T Consensus        95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~  154 (177)
T 2e2e_A           95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINRTQL  154 (177)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccHHHH
Confidence            3  788899999999999999999999888877765  889999999999999998765433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.31  E-value=2.5e-05  Score=80.53  Aligned_cols=164  Identities=8%  Similarity=-0.039  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHc-------cCCcCCHH-------HHHHHHHHHHH-hCCCchhHhHHHHHHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KRLLPILM-------DELHLSALVLS-YSPKSEQAWSHRRWVI  177 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~-------~~~~~~~~-------~EL~~~~~lL~-~nPK~y~~W~hRrwll  177 (423)
                      .+++..++.+|..+|.+..+|.....++..       .+   +++       +.+..+..++. .+|++..+|....-+.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~  331 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG---DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  331 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc---chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            477889999999999999999999998875       33   444       78999999997 8999999999998888


Q ss_pred             HHhhhccChhHHhHHHHHHHHHHHHHhcCCCc-hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516          178 NMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML  256 (423)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~  256 (423)
                      ...+.        +++...+.+++++.+|.+. .+|.....+..+.+.  +++..+.+.+.+...|.+.+.|.....+..
T Consensus       332 ~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          332 ESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEY  401 (530)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred             HhcCC--------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            77665        6888999999999999986 589888777666543  778899999999999887777654444322


Q ss_pred             HhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          257 RNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ...+                   -.++.......++..+|++..+|.....+
T Consensus       402 ~~~~-------------------~~~~A~~~~e~al~~~p~~~~~~~~~~~~  434 (530)
T 2ooe_A          402 YCSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYIDY  434 (530)
T ss_dssp             HHTC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcC-------------------ChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            1111                   24677888889999999999999765443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.30  E-value=4.4e-05  Score=73.21  Aligned_cols=159  Identities=6%  Similarity=-0.156  Sum_probs=127.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++.+..     |++..++..+..++...+   ..++++..+..++..+|++..+-....|+-.....      .-
T Consensus       116 ~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~------~~  181 (291)
T 3mkr_A          116 NPDAALRTLHQ-----GDSLECMAMTVQILLKLD---RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG------EK  181 (291)
T ss_dssp             CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT------TH
T ss_pred             CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc------hH
Confidence            35677776665     999999999999999886   78999999999999999986443333443322211      13


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+.+..++++.+|.+-.+|+.+..+...++.  +++..+.+.+.+..+|.|..+|.++..+...+..          
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~----------  249 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK----------  249 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------
Confidence            7899999999999999999999999999988876  8999999999999999999999999988776421          


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                               ..+...++..+++..+|+|..+-.+
T Consensus       250 ---------~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          250 ---------PPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             ---------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence                     1123457889999999999876554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.30  E-value=2e-06  Score=84.37  Aligned_cols=133  Identities=8%  Similarity=-0.126  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---------------hhHhHHHHHHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---------------EQAWSHRRWVI  177 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---------------y~~W~hRrwll  177 (423)
                      .+++.....++..+|++..+|+.++.++...+   .+.+++..+..++..+|.+               ..+|..+..++
T Consensus       130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  206 (336)
T 1p5q_A          130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH  206 (336)
T ss_dssp             ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhcCCHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666777889999999999999998875   7999999999999999999               58999999998


Q ss_pred             HHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ..++.        +.+.+..+.++++.+|.|..+|..++.++..++.  +++.+..+.+.+..+|.|..+|..+..+...
T Consensus       207 ~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          207 LKLQA--------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            88776        7899999999999999999999999999988765  8999999999999999999999998887776


Q ss_pred             h
Q 014516          258 N  258 (423)
Q Consensus       258 l  258 (423)
                      +
T Consensus       277 ~  277 (336)
T 1p5q_A          277 I  277 (336)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.29  E-value=0.00021  Score=66.06  Aligned_cols=157  Identities=9%  Similarity=-0.026  Sum_probs=122.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHH
Q 014516          123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVE  199 (423)
Q Consensus       123 Ll~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~  199 (423)
                      ..++|....++..++..+...+   .+++++..+..++..+|.+   ..+|..+..+....+.        +.+.+..+.
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~   76 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQG---KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------YLLAASEYE   76 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTT---CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHH
Confidence            3568899999999999888875   7999999999999999999   8899999999888766        789999999


Q ss_pred             HHHHhcCCC---chhchHHHHHHHhcC------hhhHHHHHHHHHHHHhccCCChhHHHHH-----------------HH
Q 014516          200 KIAERSKMN---YRAWNHRCWLVSFMT------REQVLDELKKSRNWSGLHVADNSCFHYR-----------------RR  253 (423)
Q Consensus       200 ~~l~~~pkN---Y~AW~hR~wll~~~~------~~~~~~EL~~~~k~i~~d~~N~SaW~yR-----------------~~  253 (423)
                      ++++.+|.+   ..++...+.+.....      ...+.+.+..+.+.+..+|.+..++..+                 ..
T Consensus        77 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           77 RFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             HHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998865   457777887776610      2348899999999999999998887444                 22


Q ss_pred             HHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHH
Q 014516          254 LMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA---LWLHRRFLSM  310 (423)
Q Consensus       254 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS---aW~yrr~Ll~  310 (423)
                      +....                    .-+++.+....+++..+|++..   +|..+..+..
T Consensus       157 ~~~~~--------------------g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          157 LYERR--------------------ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHT--------------------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHc--------------------cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            22221                    2378899999999999998653   6666554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.28  E-value=1.8e-06  Score=88.56  Aligned_cols=132  Identities=7%  Similarity=-0.072  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---------------hhHhHHHHHHHH
Q 014516          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---------------EQAWSHRRWVIN  178 (423)
Q Consensus       114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---------------y~~W~hRrwll~  178 (423)
                      ++++....++..+|++..+|+.++.++...+   .+.+++..+..++..+|.+               ..+|..+..++.
T Consensus       252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGG---KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhcCHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667777889999999999999998875   8999999999999999999               689999999998


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ++..        +.+.+..+.++++.+|.|..+|..|+.++..++.  +++.+..+.+.+.++|.|..+|..+..+...+
T Consensus       329 ~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          329 KLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             HhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8876        7899999999999999999999999999988765  89999999999999999999999999887765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.27  E-value=2e-05  Score=63.28  Aligned_cols=121  Identities=7%  Similarity=0.018  Sum_probs=104.0

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      .+|....+|.....+....+   .+.+++.++..++..+|++..+|..+..+....+.        +.+.+.++.++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVE---NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICI   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhc
Confidence            35567778888888777765   78999999999999999999999999988877665        68889999999999


Q ss_pred             cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      +|.+..+|...+.+....+.  +.+.+..+.+.+..+|.+..+|.....+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           76 DPAYSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            99999999999988877765  78899999999999999999998888776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.27  E-value=1.4e-05  Score=64.77  Aligned_cols=119  Identities=10%  Similarity=0.052  Sum_probs=102.0

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      .|.+..+|..+..+....+   .+++++..+..++..+|++..+|..+..++...+.        +++.+.++.++++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE   80 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC
Confidence            5778889999998887765   78999999999999999999999988888766554        688899999999999


Q ss_pred             CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      |.+..+|.....+...++.  +++.+..+.+.+..+|.+..+|.....+...
T Consensus        81 ~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999988877765  7889999999999999998888887766554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.27  E-value=8.8e-06  Score=68.81  Aligned_cols=125  Identities=6%  Similarity=-0.145  Sum_probs=105.2

Q ss_pred             HHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHH
Q 014516          155 LSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKS  234 (423)
Q Consensus       155 ~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (423)
                      .+..++..+|++..+|.....++...+.        +.+.+..+.+++..+|.|..+|...+.+....+.  +++.+..+
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~   75 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGK--------WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSY   75 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence            3456677899999999988888777655        7899999999999999999999999999988765  89999999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          235 RNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       235 ~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      ++.+..+|.|..+|.++..++..+.                    -+++.+.+..+++..+|++...+..+..+.
T Consensus        76 ~~al~~~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           76 SYGALMDINEPRFPFHAAECHLQLG--------------------DLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            9999999999999999998887752                    267888999999999999988776655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.26  E-value=3.9e-05  Score=65.33  Aligned_cols=147  Identities=7%  Similarity=-0.075  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                      ..+|..+..+....+   .+++.+..+..++..+|++..+|.....+....+.        +++.+.++.++++.+|.+.
T Consensus         8 ~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~   76 (186)
T 3as5_A            8 QVYYRDKGISHAKAG---RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADAPDNV   76 (186)
T ss_dssp             HHHHHHHHHHHHHHT---CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCH
Confidence            456666777776664   78999999999999999999999998888877655        6889999999999999999


Q ss_pred             hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHH
Q 014516          210 RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNE  289 (423)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~  289 (423)
                      .+|.....+....+.  +.+.++.+.+.+..+|.+..+|.....+.....                    -+++.+++..
T Consensus        77 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------------------~~~~A~~~~~  134 (186)
T 3as5_A           77 KVATVLGLTYVQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNLG--------------------RFDEAIDSFK  134 (186)
T ss_dssp             HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC--------------------cHHHHHHHHH
Confidence            999999888877654  788999999999999999999988887766531                    2678888999


Q ss_pred             HHHhhcCCCccHHHHHHHHH
Q 014516          290 SLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       290 ~~I~~~p~neSaW~yrr~Ll  309 (423)
                      +++..+|.+..+|.....+.
T Consensus       135 ~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A          135 IALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCccchHHHHHHHHHH
Confidence            99999999987777655444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.7e-05  Score=65.01  Aligned_cols=116  Identities=5%  Similarity=-0.067  Sum_probs=98.0

Q ss_pred             CCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516          164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       164 PK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~  243 (423)
                      |.....|..+...+...+.        +.+.+..+.++++.+|.+..+|..++.+...++.  +.+.+..+.+.+..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT
T ss_pred             CchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCC
Confidence            3455677777776666554        7899999999999999999999999999988765  89999999999999999


Q ss_pred             ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc------CCCccHHHHHHHHH
Q 014516          244 DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY------VGREALWLHRRFLS  309 (423)
Q Consensus       244 N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~------p~neSaW~yrr~Ll  309 (423)
                      +..+|..+..+...+.                    -+++.+++..+++..+      |.|..++.....+.
T Consensus        71 ~~~~~~~lg~~~~~~~--------------------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           71 FVRAYIRKATAQIAVK--------------------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             CHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh--------------------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            9999999998887752                    2678899999999999      99988888766554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.22  E-value=1.4e-05  Score=68.87  Aligned_cols=98  Identities=14%  Similarity=-0.019  Sum_probs=89.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++.++|++..+|+.+..++...+   .+++++..+..++..+|++..+|..+..++..++.        
T Consensus        26 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------   94 (164)
T 3sz7_A           26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG---QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD--------   94 (164)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------
Confidence            3588999999999999999999999999999886   79999999999999999999999999999988876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLV  219 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll  219 (423)
                      +.+.+..+.++++.+|.|..+|..+....
T Consensus        95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           95 YKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            78999999999999999999998776553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.21  E-value=3e-05  Score=63.87  Aligned_cols=120  Identities=8%  Similarity=-0.068  Sum_probs=100.6

Q ss_pred             HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516          124 LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (423)
Q Consensus       124 l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (423)
                      ..+|....+|...+.+....+   .+++++..+..++..+|+++.+|..+..++..++.        +...+..+.++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~   71 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALE   71 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Confidence            357888999999999888875   79999999999999999999999999999888765        6889999999999


Q ss_pred             hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC-----ChhHHHHHHHHHH
Q 014516          204 RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA-----DNSCFHYRRRLML  256 (423)
Q Consensus       204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~-----N~SaW~yR~~Ll~  256 (423)
                      .+|.+..+|...+.+...++.  +.+.+..+.+.+..+|.     +...+.....+..
T Consensus        72 ~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           72 LDGQSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888765  78889999999999887     5555555544433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.19  E-value=6.8e-06  Score=72.85  Aligned_cols=114  Identities=8%  Similarity=-0.034  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC-------chh-----HhHHHHHHHHHhhhccChhHHhHHHHHH
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK-------SEQ-----AWSHRRWVINMISRNCSTLQWIIERESE  196 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK-------~y~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~  196 (423)
                      ....|..++..+...+   ++++++..++.+|..+|.       +..     +|+.|.-++..++.        +++.+.
T Consensus        10 ~a~~~~~~G~~l~~~g---~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~   78 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAG---EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALH   78 (159)
T ss_dssp             HHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHH
Confidence            3456777788777775   899999999999999999       443     99999999999987        788889


Q ss_pred             HHHHHHHh-------cCCCchhc----hHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          197 LVEKIAER-------SKMNYRAW----NHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       197 ~~~~~l~~-------~pkNY~AW----~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      .++++++.       +|.+..+|    +.|+.++..++.  +++.+..+++.++++|.|-....-+.-+.
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            99999999       99999999    999999999877  89999999999999888766555444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.19  E-value=0.00036  Score=63.44  Aligned_cols=167  Identities=5%  Similarity=-0.152  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh---HhHHHHHHHHHhhhcc
Q 014516          111 LAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ---AWSHRRWVINMISRNC  184 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~---~W~hRrwll~~l~~~~  184 (423)
                      ..++++.....++..+|++.   .++..++.+....+   .+++++..++.++..+|++..   +|..+..+...+....
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            35889999999999999864   68999999998876   799999999999999999986   7888887776532100


Q ss_pred             --------C--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh---------------cChhhHHHHHHHHHHHHh
Q 014516          185 --------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF---------------MTREQVLDELKKSRNWSG  239 (423)
Q Consensus       185 --------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~---------------~~~~~~~~EL~~~~k~i~  239 (423)
                              .  .-...+++.+....++++.+|.+-.+|.-+..+...               +....+...+...++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                    0  001237889999999999999999998644322111               111347888999999999


Q ss_pred             ccCCCh---hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          240 LHVADN---SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       240 ~d~~N~---SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                      .+|.+-   .++..+..+..++.                    .+++.+++...++...|.+..
T Consensus       176 ~~p~~~~~~~a~~~l~~~~~~~g--------------------~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          176 DYPDTQATRDALPLMENAYRQMQ--------------------MNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HSTTSHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHCCSCCCC
T ss_pred             HCcCCCccHHHHHHHHHHHHHcC--------------------CcHHHHHHHHHHHhhCCCchh
Confidence            999886   46777776666642                    256777888888888887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.16  E-value=8e-05  Score=58.59  Aligned_cols=113  Identities=8%  Similarity=0.018  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      ...+|.....+....+   .+++.+.++..++..+|.+..+|.....+....+.        +...+..+.++++.+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~   71 (118)
T 1elw_A            3 QVNELKEKGNKALSVG---NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCccc
Confidence            3456777777776664   78999999999999999999999988888877655        678889999999999999


Q ss_pred             chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      ..+|.....+....+.  +.+.+..+.+.+..+|.+..+|.....+
T Consensus        72 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           72 GKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            9999998888877765  7888899999999999998888776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.16  E-value=1.3e-05  Score=62.85  Aligned_cols=108  Identities=7%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      ++|++..+|..+..+....+   .+.+++..+..++..+|++..+|..+..++...+.        +++.+.++.++++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~   69 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAG---NYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--------YEEAVDCYNYVINV   69 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHh
Confidence            47889999999999888775   78999999999999999999999999888877765        78899999999999


Q ss_pred             cCC--CchhchHHHHHHHhc-ChhhHHHHHHHHHHHHhccCCCh
Q 014516          205 SKM--NYRAWNHRCWLVSFM-TREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       205 ~pk--NY~AW~hR~wll~~~-~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      +|.  +..+|.....+...+ +.  +++.++++.+.+..+|.+.
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccCCC
Confidence            999  999999999888777 65  7889999999999998764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.15  E-value=2.8e-05  Score=67.50  Aligned_cols=133  Identities=5%  Similarity=-0.072  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHH-HHhcChhh
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL-VSFMTREQ  226 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl-l~~~~~~~  226 (423)
                      .+++++..+..++..+|.+..+|.....+....+.        +.+.+....++++.+|.+..+|.....+ ....+...
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            56678889999999999999999999998887765        7899999999999999999999999888 54544411


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                      ..+.+..+.+.+..+|.+..+|..+..+.....                    -+++.+.+..+++..+|.+...+....
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQA--------------------NYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            288899999999999999999998887776641                    267889999999999999988775544


Q ss_pred             HH
Q 014516          307 FL  308 (423)
Q Consensus       307 ~L  308 (423)
                      .+
T Consensus       157 ~i  158 (177)
T 2e2e_A          157 SI  158 (177)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.13  E-value=0.00021  Score=57.00  Aligned_cols=134  Identities=10%  Similarity=0.075  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (423)
                      .+|+....+....+   .+++.+.++..++..+|.+..+|.....+....+.        +++.+.++.+++..+|.+..
T Consensus         2 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~   70 (136)
T 2fo7_A            2 EAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHcC---cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHCCCchH
Confidence            35666666666554   67888888888888888888888877766665543        67778888888888888888


Q ss_pred             hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHH
Q 014516          211 AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNES  290 (423)
Q Consensus       211 AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~  290 (423)
                      +|.....+....+.  +.+.+..+.+.+..+|.+..+|.....+.....                    -+++.+.+...
T Consensus        71 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------------------~~~~A~~~~~~  128 (136)
T 2fo7_A           71 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------------------DYDEAIEYYQK  128 (136)
T ss_dssp             HHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc--------------------cHHHHHHHHHH
Confidence            88777777665543  778888888888888888888877666554421                    25667777777


Q ss_pred             HHhhcCC
Q 014516          291 LIKQYVG  297 (423)
Q Consensus       291 ~I~~~p~  297 (423)
                      ++..+|.
T Consensus       129 ~~~~~~~  135 (136)
T 2fo7_A          129 ALELDPR  135 (136)
T ss_dssp             HHHHSTT
T ss_pred             HHccCCC
Confidence            7777775

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.13  E-value=3.9e-05  Score=79.97  Aligned_cols=127  Identities=7%  Similarity=-0.119  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .+++++.+..++.++|++..+|+....++...+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~  107 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ---RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--------A  107 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence            588999999999999999999999999998876   79999999999999999999999999999888766        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhc---ChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFM---TREQVLDELKKSRNWSGLHVADNSCFHYR  251 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---~~~~~~~EL~~~~k~i~~d~~N~SaW~yR  251 (423)
                      ++.+..+.++++.+|.+..+|.....+...+   +.  .++.++.+.+.+..+|.+.++|...
T Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhcCCcccChHHHh
Confidence            8899999999999999999999999998887   54  7889999999999999999888543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.12  E-value=8e-05  Score=70.97  Aligned_cols=153  Identities=7%  Similarity=-0.098  Sum_probs=121.8

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      .-|++..++......+...+   ++.+++..+..+|..+|++..+|.....++...+.        +++.+..+.+++..
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~~  180 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQES---NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCGG
T ss_pred             HcCCchhhHHHHHHHHHhCC---CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCchh
Confidence            34899999988888877765   78999999999999999999999999888887765        68899999999999


Q ss_pred             cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHH
Q 014516          205 SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEE  284 (423)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eE  284 (423)
                      +|.+...+......+....  ....++....+.+..+|.|..++..+..++....                    -+++.
T Consensus       181 ~p~~~~~~~~~~~~l~~~~--~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g--------------------~~~~A  238 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQA--ADTPEIQQLQQQVAENPEDAALATQLALQLHQVG--------------------RNEEA  238 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHH
T ss_pred             hcchHHHHHHHHHHHHhhc--ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc--------------------cHHHH
Confidence            9966655555444343322  2455788889999999999999999988877642                    26788


Q ss_pred             HHHHHHHHhhcCCC--ccHHHHHHHHHH
Q 014516          285 LDWNESLIKQYVGR--EALWLHRRFLSM  310 (423)
Q Consensus       285 L~~~~~~I~~~p~n--eSaW~yrr~Ll~  310 (423)
                      ++...+++..+|++  ..+|..+..++.
T Consensus       239 ~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          239 LELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchHHHHHHHHHH
Confidence            89999999999998  777777665553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=7.7e-05  Score=61.65  Aligned_cols=118  Identities=8%  Similarity=-0.013  Sum_probs=102.7

Q ss_pred             HhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516          124 LLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (423)
Q Consensus       124 l~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (423)
                      ..+|....+|..+.......+   .+.+++..+..++..+|.+   ..+|..+..++.....        +.+.+..+.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~   90 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCG---DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--------YDKAETEASK   90 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHH
Confidence            457888999999999888775   7999999999999999998   8889888888877655        7889999999


Q ss_pred             HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          201 IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +++.+|.+..+|..+..+...++.  +++.+..+.+.+..+|.+..+|.....+
T Consensus        91 ~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           91 AIEKDGGDVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhhCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999999999998887765  7889999999999999999888765544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.11  E-value=3.5e-05  Score=67.39  Aligned_cols=135  Identities=7%  Similarity=-0.149  Sum_probs=109.8

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|++..+|.....++...+   ..++++..+..++..+| ++..+.....+.......       
T Consensus        21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~-------   89 (176)
T 2r5s_A           21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETK---QFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAA-------   89 (176)
T ss_dssp             CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHT-------
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcc-------
Confidence            3588999999999999999999999999998876   78999999999999999 776655544332211110       


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD--NSCFHYRRRLMLRN  258 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N--~SaW~yR~~Ll~~l  258 (423)
                      ...++..+.++++.+|.+..+|....-++...+.  +++.+..+.+.+..+|..  ..+|.....++..+
T Consensus        90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A           90 ESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            1235789999999999999999999999888765  889999999999999876  45888887777664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.10  E-value=0.00012  Score=75.52  Aligned_cols=159  Identities=6%  Similarity=-0.133  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-hHhHHHHHHHHHhhhccChhHHh
Q 014516          113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-QAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       113 ~~~L~~t~~lLl-~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ++++..++.++. ++|++..+|.....+....+   .+++....+..++..+|+++ .+|.....++.+.+.        
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------  371 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------  371 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------
Confidence            489999999997 89999999999999988875   78999999999999999986 599988887776654        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHH-hcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVS-FMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNN  269 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~-~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~  269 (423)
                      ++....++.++++..|.+++.|.-..++.- ..+  ..++.....++.++.+|.+...|.....+..+..          
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~--~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g----------  439 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN----------  439 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT----------
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC----------
Confidence            678889999999999998888876666532 233  3688899999999999999999977666554321          


Q ss_pred             CCCchhchHHHHHHHHHHHHHHHhhcCCCcc----HHHH
Q 014516          270 SSGYFVETYQIWKEELDWNESLIKQYVGREA----LWLH  304 (423)
Q Consensus       270 ~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS----aW~y  304 (423)
                                -.++......+++...|.+..    +|..
T Consensus       440 ----------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~  468 (530)
T 2ooe_A          440 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWAR  468 (530)
T ss_dssp             ----------CHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred             ----------CHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence                      145566777788887665543    8854

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.09  E-value=0.00012  Score=58.52  Aligned_cols=120  Identities=14%  Similarity=0.057  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|+....+....+   .+++.+..+..++..+|.+..+|.....++...+.        +
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~   85 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------Y   85 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc---CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC--------H
Confidence            478899999999999999999999888887765   78999999999999999999999888777665544        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      ++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHHHHHccCCCC
Confidence            888999999999999999999888888766654  788899999999888763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.09  E-value=1.4e-05  Score=70.74  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=83.0

Q ss_pred             chHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-------CCCchhHh-
Q 014516          111 LAIEVMIHSKALLLLSCD-------FAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSY-------SPKSEQAW-  170 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe-------~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-------nPK~y~~W-  170 (423)
                      ..++++..++++|.++|+       +..     +|+.|..++..++   .+++.+..++.+|..       +|+++.+| 
T Consensus        26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence            468999999999999999       544     9999999999986   899999999999999       99999999 


Q ss_pred             ---HHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhch
Q 014516          171 ---SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWN  213 (423)
Q Consensus       171 ---~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~  213 (423)
                         +.|..++..++.        +++.+..+.++++.+|.+-.+..
T Consensus       103 ~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A          103 SAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             HHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHHHH
Confidence               999999999987        78999999999999997655543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.09  E-value=9.9e-05  Score=62.23  Aligned_cols=115  Identities=8%  Similarity=-0.042  Sum_probs=93.5

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|++..+|..+..+....+   .+.+++..+..++..+|++..+|.....++..++.        
T Consensus        28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------   96 (166)
T 1a17_A           28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK--------   96 (166)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc--------
Confidence            3578999999999999999999999999988875   78999999999999999999999999988887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN  236 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k  236 (423)
                      +.+.+..+.++++.+|.+..+|.+...+...+....+++.++...+
T Consensus        97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            6889999999999999999988765555333322234444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.07  E-value=5.2e-05  Score=65.13  Aligned_cols=117  Identities=10%  Similarity=-0.007  Sum_probs=100.3

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------------------CCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSY------------------SPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------------------nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ...+|..++..+...+   .+.+++..+..++..                  +|.+..+|..+..++.+++.        
T Consensus        10 ~a~~~~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------   78 (162)
T 3rkv_A           10 SVEALRQKGNELFVQK---DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------   78 (162)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------
Confidence            3456777787777765   789999999999998                  88888999999999988876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHHh
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN-SCFHYRRRLMLRN  258 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~-SaW~yR~~Ll~~l  258 (423)
                      +...+..+.++++.+|.|..+|..++.++..++.  +.+.+..+.+.+.++|.|- ........+...+
T Consensus        79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999988876  8999999999999999998 5566666655554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.06  E-value=0.00025  Score=59.66  Aligned_cols=113  Identities=7%  Similarity=-0.003  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      ...+|.....+....+   .+.+++..+..++..+|++..+|..+..++...+.        +.+.+..+.++++.+|.+
T Consensus        12 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           12 RAEELKTQANDYFKAK---DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccc
Confidence            3456777777777664   79999999999999999999999999998887765        789999999999999999


Q ss_pred             chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          209 YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       209 Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      ..+|...+.+...++.  +.+.+..+.+.+..+|.+..+|.+....
T Consensus        81 ~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           81 IKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999888765  8899999999999999999988665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.05  E-value=4.2e-05  Score=63.32  Aligned_cols=87  Identities=9%  Similarity=-0.085  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|..++.++...+   ...+++..+..++..+|.+..+|.....++...+.        +
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~--------~  101 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  101 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            588999999999999999999999999999886   78999999999999999999999999999888776        6


Q ss_pred             HHHHHHHHHHHHhcCCCc
Q 014516          192 ERESELVEKIAERSKMNY  209 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY  209 (423)
                      .+.+..+.++++.+|.+.
T Consensus       102 ~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          102 NAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhCcCCC
Confidence            889999999999999764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.04  E-value=0.00012  Score=69.62  Aligned_cols=160  Identities=9%  Similarity=-0.063  Sum_probs=119.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|++..+|..+..+....+   .+++++..+..++..+|.+..+|+.+..++..++.        
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------   87 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES--------   87 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            3588999999999999999999999999998876   78999999999999999999999999999988776        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      +++.+..+.++++.+|.+..+.....|..-...     .........-...+.+.....+...++.+             
T Consensus        88 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~l~~~-------------  149 (281)
T 2c2l_A           88 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA-----KKKRWNSIEERRIHQESELHSYLTRLIAA-------------  149 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH-----HHHHHHHHHHTCCCCCCHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------------
Confidence            788999999999999987655554444433221     11222222334667777777777665432             


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                               -++++++..+.++..+|++..+......+
T Consensus       150 ---------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (281)
T 2c2l_A          150 ---------ERERELEECQRNHEGHEDDGHIRAQQACI  178 (281)
T ss_dssp             ---------HHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred             ---------HHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence                     24566777777888888877555544333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.02  E-value=0.00011  Score=70.12  Aligned_cols=136  Identities=4%  Similarity=-0.160  Sum_probs=113.7

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ...++++..+..+|..+|++..++.....++...+   ..++++..+..++..+|.....+......+.....       
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~-------  200 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA-------  200 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT-------
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc-------
Confidence            34688999999999999999999999999998876   78999999999999999666554444444444333       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD--NSCFHYRRRLMLRN  258 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N--~SaW~yR~~Ll~~l  258 (423)
                       ...++....++++.+|.|..+|....-++...+.  +++.++.+.+.+..+|.+  -.+|.....++..+
T Consensus       201 -~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          201 -DTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             -SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             -cCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence             3457888999999999999999999998887765  889999999999999998  77888887777664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.99  E-value=6.3e-05  Score=62.25  Aligned_cols=101  Identities=10%  Similarity=-0.045  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                      .|..+...+...+   .+.+++..+..++..+|++..+|.....++...+.        +.+.+..+.++++.+|.+..+
T Consensus        19 ~~~~~g~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~   87 (121)
T 1hxi_A           19 NPMEEGLSMLKLA---NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAV   87 (121)
T ss_dssp             CHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHH
Confidence            3555666666654   78999999999999999999999999999988766        689999999999999999999


Q ss_pred             chHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          212 WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       212 W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      |.....++...+.  +++.+..+.+++..+|.+.
T Consensus        88 ~~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           88 HAALAVSHTNEHN--ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence            9999988877654  7889999999999999764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.99  E-value=0.00031  Score=55.55  Aligned_cols=119  Identities=12%  Similarity=0.044  Sum_probs=95.8

Q ss_pred             hCCCc-HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH
Q 014516          125 LSCDF-ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (423)
Q Consensus       125 ~nPe~-~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (423)
                      ++|.. ..+|.....+....+   .+++.+.++..++..+|.+..+|.....++...+.        +++.+.++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~   71 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALE   71 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHH
Confidence            35555 678888887777765   78999999999999999999999888877776654        6788899999999


Q ss_pred             hcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516          204 RSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML  256 (423)
Q Consensus       204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~  256 (423)
                      .+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..++..+..+..
T Consensus        72 ~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           72 LDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999888888777654  788899999999999999888877766544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.97  E-value=0.00016  Score=57.81  Aligned_cols=102  Identities=9%  Similarity=-0.047  Sum_probs=90.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++...+.        
T Consensus        27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   95 (131)
T 2vyi_A           27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG---NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK--------   95 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---chHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC--------
Confidence            3578999999999999999999999999998875   78999999999999999999999999998887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (423)
                      +.+.+.++.++++.+|.+..+|.....+...++
T Consensus        96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            688999999999999999999988777765543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.96  E-value=4.2e-05  Score=66.89  Aligned_cols=152  Identities=9%  Similarity=-0.109  Sum_probs=112.5

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      ||.....+..+...+...+   .+.+.+..+..++..+|++..+|.....++...+.        +++.+..+.+++..+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~   70 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQG---EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEY   70 (176)
T ss_dssp             ----CTTHHHHHHHHHHTT---CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGG
T ss_pred             CCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhcc
Confidence            3444444555666666554   78999999999999999999999999999887766        688999999999999


Q ss_pred             CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHH
Q 014516          206 KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEEL  285 (423)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL  285 (423)
                      | +...+.....+... .......++..+.+.+..+|.|..+|..+..++....                    -+++.+
T Consensus        71 p-~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g--------------------~~~~A~  128 (176)
T 2r5s_A           71 Q-DNSYKSLIAKLELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQVG--------------------RDEEAL  128 (176)
T ss_dssp             C-CHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------------------CHHHHH
T ss_pred             C-ChHHHHHHHHHHHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------------------cHHHHH
Confidence            9 66554444433211 1101123588999999999999999999998887642                    267888


Q ss_pred             HHHHHHHhhcCCC--ccHHHHHHHHHH
Q 014516          286 DWNESLIKQYVGR--EALWLHRRFLSM  310 (423)
Q Consensus       286 ~~~~~~I~~~p~n--eSaW~yrr~Ll~  310 (423)
                      ....+++..+|++  ..+|.....++.
T Consensus       129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          129 ELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            9999999999986  448877665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.96  E-value=0.00023  Score=58.38  Aligned_cols=119  Identities=9%  Similarity=-0.009  Sum_probs=100.2

Q ss_pred             hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516          162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH  241 (423)
Q Consensus       162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d  241 (423)
                      .+|.+..+|.....++...+.        +...+.+..++++.+|.+..+|..++.+...++.  +.+.+..+.+.+..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~   73 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRK--------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELD   73 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred             CccccHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhC
Confidence            567888999988888877665        7899999999999999999999999999988765  889999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHH
Q 014516          242 VADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG-----REALWLHRRFLSM  310 (423)
Q Consensus       242 ~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~-----neSaW~yrr~Ll~  310 (423)
                      |.+..+|..+..+...+.                    -+++.+.+..+++..+|+     +..+|...+.+..
T Consensus        74 p~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEME--------------------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999998887652                    267888999999999998     7777777665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.96  E-value=0.00026  Score=62.70  Aligned_cols=120  Identities=3%  Similarity=-0.087  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++..+..++  +| +..+|+.++.+....+   .+++++..+..++..+|++..+|..+..++..++.        +
T Consensus        22 ~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~   87 (213)
T 1hh8_A           22 WKGALDAFSAVQ--DP-HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------Y   87 (213)
T ss_dssp             HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc--------H
Confidence            477888888874  44 7789999999998876   79999999999999999999999999999888766        7


Q ss_pred             HHHHHHHHHHHHhcCCCc----------------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhH
Q 014516          192 ERESELVEKIAERSKMNY----------------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSC  247 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY----------------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~Sa  247 (423)
                      ++.+..+.++++.+|.|-                .+|..++.+...++.  +++.+..+++.+..+|.+..+
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~  157 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHS  157 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHHHHHHcCcccccc
Confidence            899999999999988877                899999988887765  889999999999999988664

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.95  E-value=0.00013  Score=71.35  Aligned_cols=103  Identities=10%  Similarity=-0.015  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDF---------------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRW  175 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~---------------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrw  175 (423)
                      ..++++..+..+|.++|++               ..+|+.+..++...+   .+++++..+..+|..+|++..+|..+..
T Consensus       162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~  238 (336)
T 1p5q_A          162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGE  238 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3588999999999999999               699999999999886   8999999999999999999999999999


Q ss_pred             HHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516          176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (423)
                      ++..++.        +++.+..+.++++.+|.|..+|.....+...++.
T Consensus       239 ~~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          239 AHLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            9988876        7899999999999999999999999888876644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.93  E-value=0.00022  Score=67.78  Aligned_cols=180  Identities=4%  Similarity=-0.132  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHccCCcCCHHHHHHH
Q 014516           82 YKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKRLLPILMDELHL  155 (423)
Q Consensus        82 Y~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe------~~TaWn~Rk~lL~~~~~~~~~~~EL~~  155 (423)
                      |..|...|.++...|+..          ...++++..+..++.+.+.      ...+|+..+.+....+   .+++++..
T Consensus        33 ~~~A~~~~~~a~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~   99 (292)
T 1qqe_A           33 FEEAADLCVQAATIYRLR----------KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDS   99 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHT----------TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            666666666665555432          2358899999999988532      3678999999998876   78999999


Q ss_pred             HHHHHHhCCCc------hhHhHHHHHHHHHh-hhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhc
Q 014516          156 SALVLSYSPKS------EQAWSHRRWVINMI-SRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFM  222 (423)
Q Consensus       156 ~~~lL~~nPK~------y~~W~hRrwll~~l-~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~  222 (423)
                      +..++...|+.      ..+|+....++... +.        +++.+.++.++++.+|.+      ..++...+.+...+
T Consensus       100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A          100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            99999987764      45777777777763 54        688999999999999865      34566677777666


Q ss_pred             ChhhHHHHHHHHHHHHhccCCChhH-------HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhc
Q 014516          223 TREQVLDELKKSRNWSGLHVADNSC-------FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQY  295 (423)
Q Consensus       223 ~~~~~~~EL~~~~k~i~~d~~N~Sa-------W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~  295 (423)
                      +.  +.+.+..+++.+..+|.+...       |..+..+...+                    .-+.+.+.+..+++..+
T Consensus       172 g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          172 GQ--YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA--------------------TDAVAAARTLQEGQSED  229 (292)
T ss_dssp             TC--HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHGGGCC-
T ss_pred             CC--HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHhhC
Confidence            54  889999999999999887642       33333333332                    12678889999999999


Q ss_pred             CCCccHHHH
Q 014516          296 VGREALWLH  304 (423)
Q Consensus       296 p~neSaW~y  304 (423)
                      |++......
T Consensus       230 p~~~~~~~~  238 (292)
T 1qqe_A          230 PNFADSRES  238 (292)
T ss_dssp             --------H
T ss_pred             CCCCCcHHH
Confidence            998876654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.93  E-value=4.7e-05  Score=67.35  Aligned_cols=100  Identities=6%  Similarity=-0.058  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCC-------cCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRL-------LPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC  184 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~-------~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~  184 (423)
                      .+++++.+..++.+||++..+|+..+.++...+.       ...+++++..+..+|.++|++..+|+...-++..++...
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            4778889999999999999999999998887630       012579999999999999999999999999998775321


Q ss_pred             Ch---hHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          185 ST---LQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                      ++   ....+++.+.++.++++.+|.|-..
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            10   1124788999999999999987533

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.91  E-value=0.00014  Score=58.75  Aligned_cols=99  Identities=8%  Similarity=0.014  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....++..++.        +
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~  100 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL---EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD--------Y  100 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh--------H
Confidence            478999999999999999999999999987775   78999999999999999999999999998887765        6


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSF  221 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~  221 (423)
                      ++.+..+.++++.+|.+..+|.....+...
T Consensus       101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A          101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            889999999999999999888877766543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.90  E-value=9e-05  Score=75.78  Aligned_cols=158  Identities=10%  Similarity=-0.032  Sum_probs=121.2

Q ss_pred             HHHhCCCcHHHHHHHHHHHHccC---------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          122 LLLLSCDFATAWNSRKLIVSNKR---------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       122 lLl~nPe~~TaWn~Rk~lL~~~~---------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      +|.++|++  +|..|+.......         ....+++++......+..+|+...+|+.+..++.+...        +.
T Consensus       216 ~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------~~  285 (457)
T 1kt0_A          216 ILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------YM  285 (457)
T ss_dssp             EEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred             EEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------HH
Confidence            45667765  6665554321110         01233445555566677788899999999998887765        78


Q ss_pred             HHHHHHHHHHHhcCCC---------------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          193 RESELVEKIAERSKMN---------------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkN---------------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ..+..+.++++.+|.+               ..+|..+..+...++.  +.+.+..+++.+..+|.|..+|..|..++..
T Consensus       286 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~  363 (457)
T 1kt0_A          286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLL  363 (457)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            9999999999999999               5899999999988765  8999999999999999999999999988877


Q ss_pred             hhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516          258 NLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY  311 (423)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (423)
                      +.                    -+++.+.+..+++..+|+|..+|..+..+...
T Consensus       364 ~g--------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          364 MN--------------------EFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             TT--------------------CHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             cc--------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            52                    27889999999999999999999998877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.89  E-value=0.0002  Score=68.07  Aligned_cols=106  Identities=8%  Similarity=-0.048  Sum_probs=95.3

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      |....+|..++..+...+   .+.+++..+..++..+|.++.+|..+..++..++.        +.+.+..+.++++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p   69 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDG   69 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCT
T ss_pred             ChhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence            567788889998888775   79999999999999999999999999999888776        7899999999999999


Q ss_pred             CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          207 MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      .|..+|..++.++..++.  +++.+..+.+.+..+|.|.
T Consensus        70 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccch
Confidence            999999999999988765  8899999999999988763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.84  E-value=3.7e-05  Score=79.24  Aligned_cols=115  Identities=8%  Similarity=-0.045  Sum_probs=95.5

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ...+++++.+.++|.++|++..+|+.+..+....+   .+++++..+..++..+|++..+|+.+..++..++.       
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-------   89 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-------   89 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence            45688999999999999999999999999999886   79999999999999999999999999999988876       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSR  235 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (423)
                       +++.+..+.++++.+|.+..+|.....+...+....+++.++..+
T Consensus        90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             789999999999999999999998877743332223445555555

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.83  E-value=0.00033  Score=62.08  Aligned_cols=117  Identities=9%  Similarity=-0.068  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----------------hHhHHHHHHHHHhhhccChhHHhHH
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----------------~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ...+|..++......+   .+.+++..+..++...|++.                .+|..+..++..++.        +.
T Consensus        37 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~  105 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKN---EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YP  105 (198)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HH
Confidence            4456677777777664   79999999999999999988                888888888877665        78


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      +.+..+.++++.+|.+..+|..++.+...++.  +++.+..+.+.+..+|.|..++.....+...+
T Consensus       106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887765  88999999999999999999999888877665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.82  E-value=0.00031  Score=55.10  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=86.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.....++..+|++..+|..+..+....+   .+++.+..+..++..+|++..+|.....++..++.        
T Consensus        19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------   87 (118)
T 1elw_A           19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--------   87 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------
Confidence            3588999999999999999999999999988875   78999999999999999999999999999887765        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWL  218 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wl  218 (423)
                      +.+.+..+.++++.+|.+-.+|....-+
T Consensus        88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           88 FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            6888999999999999998888665433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.80  E-value=0.00013  Score=60.82  Aligned_cols=105  Identities=9%  Similarity=-0.047  Sum_probs=80.6

Q ss_pred             CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516          128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (423)
Q Consensus       128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (423)
                      +...+|.-.+......+   .+++++...+.+|..+|++..+|+.+..++..++.        +++.+..+.++++.+|.
T Consensus         6 d~A~a~~~lG~~~~~~~---~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQK---DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcc
Confidence            44556677777777664   78999999999999999999999999999888776        78899999999999998


Q ss_pred             CchhchHHHHHHHhcCh-----hhHHHHHHHHHHHHhccCC
Q 014516          208 NYRAWNHRCWLVSFMTR-----EQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       208 NY~AW~hR~wll~~~~~-----~~~~~EL~~~~k~i~~d~~  243 (423)
                      +..+|..+.-++.+++.     ..+.+.+++..+.+..+|.
T Consensus        75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            87655554444333321     2477888888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.79  E-value=0.00015  Score=62.08  Aligned_cols=97  Identities=11%  Similarity=-0.041  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH
Q 014516          112 AIEVMIHSKALLLL------------------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR  173 (423)
Q Consensus       112 ~~~~L~~t~~lLl~------------------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR  173 (423)
                      .++++..+..+|.+                  +|.+..+|+.+..+...++   .+.+++..++.+|..+|.+..+|..+
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            46777777777777                  8899999999999999886   79999999999999999999999999


Q ss_pred             HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc-hhchHHHHHH
Q 014516          174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLV  219 (423)
Q Consensus       174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll  219 (423)
                      ..++..++.        +.+.+..+.++++.+|.|- .++....-+.
T Consensus       104 g~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          104 AKARIAAWK--------LDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHTTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            999998876        7899999999999999987 4454444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.78  E-value=0.002  Score=58.43  Aligned_cols=166  Identities=7%  Similarity=-0.033  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      ..++..+...+...+   .+++++..+..++..+|.+.   .+|..+..+....+.        +.+.+....++++.+|
T Consensus         4 ~~~~~~~a~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l~~~P   72 (225)
T 2yhc_A            4 PNEIYATAQQKLQDG---NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIRLNP   72 (225)
T ss_dssp             HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHCc
Confidence            456666777666654   79999999999999999885   688888888877765        7899999999999999


Q ss_pred             CCch---hchHHHHHHHhcC----------------hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          207 MNYR---AWNHRCWLVSFMT----------------REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       207 kNY~---AW~hR~wll~~~~----------------~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                      ++..   ||..++.+...++                ....++.+..+.+.+..+|.+..++.-+..+............ 
T Consensus        73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~-  151 (225)
T 2yhc_A           73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY-  151 (225)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence            9986   7888887765421                1357889999999999999999888655432211000000000 


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGRE---ALWLHRRFLS  309 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne---SaW~yrr~Ll  309 (423)
                        ..|.......-+.+.+...+++|..+|++.   .+|..+..+.
T Consensus       152 --~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  194 (225)
T 2yhc_A          152 --SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY  194 (225)
T ss_dssp             --HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence              000000112346788999999999999986   3455544433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.78  E-value=2.7e-05  Score=76.37  Aligned_cols=143  Identities=8%  Similarity=0.006  Sum_probs=86.7

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-----------------hHhHHHHHHHHHhhhccChh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-----------------QAWSHRRWVINMISRNCSTL  187 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-----------------~~W~hRrwll~~l~~~~~~~  187 (423)
                      ..++...+|+.++..+...+   .+.+++..+..++..+|.+.                 .+|+.+..++.++..     
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~-----  245 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEE---KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR-----  245 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSS---CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----
T ss_pred             HHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence            34556677888888777664   78999999999999999887                 388888887776665     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                         +.+.+..+.++++.+|.|..+|..+..++..++.  +++.+..+.+.+..+|.|..++.....+......       
T Consensus       246 ---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-------  313 (338)
T 2if4_A          246 ---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-------  313 (338)
T ss_dssp             ---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC----------------------------
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-------
Confidence               6889999999999999999999999999887765  8999999999999999999998887766443211       


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                                  ..+.+-....+++..+|.|.
T Consensus       314 ------------~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          314 ------------LYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------------------------
T ss_pred             ------------HHHHHHHHHHHhhCCCCCCC
Confidence                        23344455566677677654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.77  E-value=0.00037  Score=61.51  Aligned_cols=105  Identities=7%  Similarity=-0.120  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC--hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh-
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-  224 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-  224 (423)
                      .+++.+.....++..+|++..+|....-++..+.....  .....+++.+..++++++.+|++-.||+..+-++..++. 
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence            47888999999999999999999999999988765322  122457899999999999999999999999999876641 


Q ss_pred             --------hhHHHHHHHHHHHHhccCCChhHHHHHH
Q 014516          225 --------EQVLDELKKSRNWSGLHVADNSCFHYRR  252 (423)
Q Consensus       225 --------~~~~~EL~~~~k~i~~d~~N~SaW~yR~  252 (423)
                              ..+++.++++.+.++++|.|-..|....
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                    3588999999999999999876655544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.76  E-value=0.00055  Score=60.55  Aligned_cols=133  Identities=9%  Similarity=0.014  Sum_probs=110.0

Q ss_pred             HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516          133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       133 Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      +..++.+....+   .+++++..+..++  +| ++.+|..+..+....+.        +.+.+..+.++++.+|.+..+|
T Consensus         9 ~~~~g~~~~~~~---~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~   74 (213)
T 1hh8_A            9 LWNEGVLAADKK---DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAY   74 (213)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHH
Confidence            445566665554   7899999998885  34 78899999998887765        7899999999999999999999


Q ss_pred             hHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh----------------hHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516          213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVADN----------------SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE  276 (423)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~----------------SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~  276 (423)
                      ..++.+...++.  +.+.+..+.+.+..+|.|.                .+|..+..+...+.                 
T Consensus        75 ~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------------  135 (213)
T 1hh8_A           75 FQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-----------------  135 (213)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-----------------
T ss_pred             HHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-----------------
Confidence            999999888765  8899999999999998887                88888888776642                 


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCccH
Q 014516          277 TYQIWKEELDWNESLIKQYVGREAL  301 (423)
Q Consensus       277 ~~~~~~eEL~~~~~~I~~~p~neSa  301 (423)
                         -+++.+++..+++..+|++...
T Consensus       136 ---~~~~A~~~~~~al~~~p~~~~~  157 (213)
T 1hh8_A          136 ---EWKKAEEQLALATSMKSEPRHS  157 (213)
T ss_dssp             ---CHHHHHHHHHHHHTTCCSGGGG
T ss_pred             ---CHHHHHHHHHHHHHcCcccccc
Confidence               2678899999999999988654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=0.00016  Score=70.84  Aligned_cols=122  Identities=8%  Similarity=-0.063  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFA-----------------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHR  173 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~-----------------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hR  173 (423)
                      ..++++..+..+|.++|++.                 .+|+.+..++...+   .+.+++..+..+|..+|++..+|..+
T Consensus       194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45889999999999999988                 49999999998876   78999999999999999999999999


Q ss_pred             HHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      ..++..++.        +++.+..+.++++.+|.|-.++.....+...... ..+.+...+.+++..+|.+
T Consensus       271 g~a~~~~g~--------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          271 GKAKAELGQ--------MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHTTTC--------HHHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHcCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCC
Confidence            999888766        7899999999999999999999887766443322 3455667777788777765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=0.00058  Score=56.20  Aligned_cols=117  Identities=4%  Similarity=-0.170  Sum_probs=97.4

Q ss_pred             hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC---chhchHHHHHHHhcChhhHHHHHHHHHHHH
Q 014516          162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLDELKKSRNWS  238 (423)
Q Consensus       162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i  238 (423)
                      .+|++...|..+.......+.        +.+.+.+..++++.+|.+   ..+|..+..+....+.  +.+.+..+.+.+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~   92 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAI   92 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHH
Confidence            567888888888777665544        789999999999999998   8899998888877654  889999999999


Q ss_pred             hccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          239 GLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       239 ~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      ..+|.+..+|..+..++..+.                    -+++.+.+..+++..+|++..+|.....+
T Consensus        93 ~~~~~~~~~~~~~a~~~~~~~--------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           93 EKDGGDVKALYRRSQALEKLG--------------------RLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hhCccCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999998888777642                    26788899999999999999988765443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.75  E-value=0.00021  Score=55.72  Aligned_cols=107  Identities=6%  Similarity=-0.078  Sum_probs=90.5

Q ss_pred             CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       163 nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      +|.+..+|.....+....+.        +.+.+....++++.+|.+..+|...+.+....+.  +++.+..+++.+..+|
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIE   71 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSC
T ss_pred             CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCc
Confidence            68899999988888766554        7889999999999999999999999998877765  8899999999999999


Q ss_pred             C--ChhHHHHHHHHHHHh-hhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCc
Q 014516          243 A--DNSCFHYRRRLMLRN-LEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       243 ~--N~SaW~yR~~Ll~~l-~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                      .  +..+|..+..+...+ .                    .+++.+++....+..+|++.
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~--------------------~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEG--------------------KEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSS--------------------CSHHHHHHHHHHGGGCCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhC--------------------CHHHHHHHHHHHhhcccCCC
Confidence            9  999988887766543 2                    25678899999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.69  E-value=0.00095  Score=53.23  Aligned_cols=118  Identities=12%  Similarity=-0.066  Sum_probs=96.3

Q ss_pred             CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          127 CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       127 Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      |+...+|.....+....+   .+.+++..+..++..+|.+..+|.....++...+.        +.+.+.++.++++.+|
T Consensus         1 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKK---DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGR   69 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhcc
Confidence            345567777887777765   78999999999999999999999999988877665        7889999999999999


Q ss_pred             CC-------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          207 MN-------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       207 kN-------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .+       ..+|...+.+....+.  +.+.+..+.+.+..+| |...+.....+...+
T Consensus        70 ~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           70 ENREDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            88       7888888888777654  7889999999999988 666666666555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.65  E-value=0.00013  Score=59.27  Aligned_cols=96  Identities=11%  Similarity=0.016  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          113 IEVMIHSKALLLL---SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       113 ~~~L~~t~~lLl~---nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ++++..+..+|.+   +|++..+|...+.++...+   .+++++..+..++..+|++..+|.....++..++.       
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------   76 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-------   76 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------
Confidence            5677888999999   6999999999999998876   79999999999999999999999999999988876       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLV  219 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll  219 (423)
                       +.+.+..+.++++.+|.+-.+..|..-+.
T Consensus        77 -~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           77 -YEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             -HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence             68999999999999999987777665443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.62  E-value=0.0013  Score=51.84  Aligned_cols=99  Identities=15%  Similarity=0.045  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++....++..+|++..+|+....+....+   .+++.+.++..++..+|.+..+|.....++...+.        
T Consensus        24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------   92 (125)
T 1na0_A           24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------   92 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------
Confidence            3578999999999999999999999999888875   78999999999999999999999988888877655        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVS  220 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (423)
                      +++.+..+.++++.+|.+-.++.....+..
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            688899999999999999888877665543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.61  E-value=0.0018  Score=52.29  Aligned_cols=98  Identities=9%  Similarity=-0.160  Sum_probs=86.0

Q ss_pred             chHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc---hhHhHHHHHHHHHhhhcc
Q 014516          111 LAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS---EQAWSHRRWVINMISRNC  184 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~---TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~---y~~W~hRrwll~~l~~~~  184 (423)
                      ..++++.....++..+|++.   .+|...+.+....+   .+++++..+..++..+|++   ..++.....++..++.  
T Consensus        17 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~--   91 (129)
T 2xev_A           17 KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR---NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK--   91 (129)
T ss_dssp             CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--
T ss_pred             CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC--
Confidence            35889999999999999998   79999999988875   7999999999999999999   8889999988887765  


Q ss_pred             ChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHH
Q 014516          185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLV  219 (423)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll  219 (423)
                            +++.+..+.++++.+|.+..++.-+..+-
T Consensus        92 ------~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           92 ------NTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             ------HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence                  68899999999999999988877666554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.58  E-value=0.00028  Score=58.64  Aligned_cols=93  Identities=5%  Similarity=0.019  Sum_probs=73.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..+|.++|++.++|+.|+.+....+   .+++++..+..++..+|++...|..+..++..++..... ...
T Consensus        23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~~   98 (127)
T 4gcn_A           23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QND   98 (127)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cCC
Confidence            3588999999999999999999999999999886   899999999999999998877665555444444321000 112


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 014516          191 IERESELVEKIAERSKM  207 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pk  207 (423)
                      +...+....++++.+|.
T Consensus        99 ~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           99 LSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhhCcC
Confidence            78889999999998874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.56  E-value=0.00059  Score=67.89  Aligned_cols=117  Identities=9%  Similarity=-0.077  Sum_probs=102.7

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH----------------hCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLS----------------YSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~----------------~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ...+|+.+...+...+   .+++++..+..+|.                .+|.+..+|..+..++.++..        ++
T Consensus       222 ~a~~~~~~g~~~~~~g---~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~  290 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQ---NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQ  290 (370)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HH
Confidence            3456777787777765   78999999999998                788889999999999988776        78


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      +.+..+.++++.+|.+..+|..++.++..++.  +++.+..+.+.++++|.|..++.....+...+
T Consensus       291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988765  89999999999999999999998888777664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.55  E-value=3e-05  Score=79.95  Aligned_cols=98  Identities=7%  Similarity=0.013  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      ..+++++..+..++..+|++..+|..+..++..++.        +++.+..+.++++.+|.+..+|..++.+...++.  
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~--   89 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRRAASNMALGK--   89 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence            479999999999999999999999999999988776        7899999999999999999999999999988765  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +++.++.+++.++.+|.+..+|.....+
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8899999999999999999999988776

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.52  E-value=0.0012  Score=58.47  Aligned_cols=101  Identities=13%  Similarity=-0.012  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFA----------------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~----------------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr  174 (423)
                      ..++++..+..++.++|++.                .+|..+..+....+   .+++++..+..++..+|++..+|..+.
T Consensus        53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg  129 (198)
T 2fbn_A           53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLG  129 (198)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            35889999999999999987                89999999988875   799999999999999999999999999


Q ss_pred             HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516          175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (423)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (423)
                      .++..++.        +++.+..+.++++.+|.+..+|.....+...+
T Consensus       130 ~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          130 VANMYFGF--------LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99888776        68899999999999999999888877666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.52  E-value=0.0022  Score=51.69  Aligned_cols=108  Identities=7%  Similarity=-0.087  Sum_probs=90.2

Q ss_pred             HHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC--
Q 014516          134 NSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN--  208 (423)
Q Consensus       134 n~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN--  208 (423)
                      ..+..+....+   .+.+++..+..++..+|.+.   .+|.....+....+.        +.+.+..+.++++.+|.+  
T Consensus         6 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~   74 (129)
T 2xev_A            6 YNVAFDALKNG---KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------FQLAEAQFRDLVSRYPTHDK   74 (129)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCCcc
Confidence            34455555554   78999999999999999998   799888888877665        789999999999999999  


Q ss_pred             -chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          209 -YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       209 -Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                       ..++...+.+...++.  +++.+..+++.+..+|.+..+..-+..+
T Consensus        75 ~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence             7779999888887765  8899999999999999988877666654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.51  E-value=0.0015  Score=59.23  Aligned_cols=160  Identities=11%  Similarity=0.061  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHHHHHHHhhhccC
Q 014516          115 VMIHSKALLLLS-CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRRWVINMISRNCS  185 (423)
Q Consensus       115 ~L~~t~~lLl~n-Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRrwll~~l~~~~~  185 (423)
                      +++....++..+ |....+|+....+....+   .+.+++.++..++..        +|....+|.....++...+.   
T Consensus        27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  100 (283)
T 3edt_B           27 ALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK---  100 (283)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc---
Confidence            333333333333 677889999999888875   789999999999876        46677788888877776654   


Q ss_pred             hhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc--------cCCChhHHH
Q 014516          186 TLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL--------HVADNSCFH  249 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~--------d~~N~SaW~  249 (423)
                           +.+.+.++.++++.        +|....+|.....+....+.  +++.+.++.+.+..        +|.+..++.
T Consensus       101 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B          101 -----YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence                 57777788887777        58888899998888877665  78889999999888        676777787


Q ss_pred             HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhh---------cCCCccHHHHHHH
Q 014516          250 YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQ---------YVGREALWLHRRF  307 (423)
Q Consensus       250 yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~---------~p~neSaW~yrr~  307 (423)
                      ....+.....                    -+++.+.+..+++..         ++....+|.....
T Consensus       174 ~la~~~~~~g--------------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  220 (283)
T 3edt_B          174 NLASCYLKQG--------------------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE  220 (283)
T ss_dssp             HHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHH
T ss_pred             HHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            7777766542                    245556666666654         5666677766443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.44  E-value=0.00078  Score=54.06  Aligned_cols=86  Identities=10%  Similarity=0.010  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHH
Q 014516          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIER  193 (423)
Q Consensus       114 ~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~  193 (423)
                      +++..+..++..+|++..+|+....+....+   .+++++..+..++..+|.+..+|.....++...+.        +.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--------RAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--------HHH
Confidence            4678889999999999999999999998876   79999999999999999999999999999888766        688


Q ss_pred             HHHHHHHHHHhcCCCch
Q 014516          194 ESELVEKIAERSKMNYR  210 (423)
Q Consensus       194 EL~~~~~~l~~~pkNY~  210 (423)
                      .+..+.++++.+|.+-.
T Consensus        72 A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           72 ARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcccccc
Confidence            88999999999886543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.43  E-value=0.0002  Score=58.16  Aligned_cols=99  Identities=3%  Similarity=0.010  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHHh---CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh
Q 014516          148 ILMDELHLSALVLSY---SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~---nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (423)
                      .+++++.++..++..   +|.+..+|.....++..++.        +++.+..+.++++.+|.+..+|...+.++..++.
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR   76 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence            466788999999999   59999999999999888776        7899999999999999999999999999988765


Q ss_pred             hhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516          225 EQVLDELKKSRNWSGLHVADNSCFHYRRRLML  256 (423)
Q Consensus       225 ~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~  256 (423)
                        +.+.+..+.+.+..+|.|.....|...+..
T Consensus        77 --~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           77 --YEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             --HHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence              889999999999999999998888776544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.41  E-value=0.00084  Score=63.66  Aligned_cols=165  Identities=7%  Similarity=-0.068  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHcc-CCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNK-RLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVI  177 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~-~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll  177 (423)
                      ..++++.++..+|.+.|+.      ..+++..+.+.... +   .+++++..+..+|..+|+.      ..+++....++
T Consensus        92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A           92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH---DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            4688999999999998765      56888888888874 5   7899999999999988865      45677777777


Q ss_pred             HHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh-------chHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516          178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRA-------WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY  250 (423)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A-------W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y  250 (423)
                      ..++.        +.+.+..+.++++.+|.+...       |...+.+...++.  +.+.+.++++.+..+|++..+...
T Consensus       169 ~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          169 ALDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHGGGCC---------H
T ss_pred             HHhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCcHHH
Confidence            77665        789999999999999988653       3444555555543  789999999999999998877655


Q ss_pred             HHH--HHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHH
Q 014516          251 RRR--LMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWL  303 (423)
Q Consensus       251 R~~--Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~  303 (423)
                      +..  +...+ ...              ....+.+.+....+++..+|.+..+|.
T Consensus       239 ~~l~~l~~~~-~~~--------------~~~~~~~A~~~~~~~~~l~~~~~~~~~  278 (292)
T 1qqe_A          239 NFLKSLIDAV-NEG--------------DSEQLSEHCKEFDNFMRLDKWKITILN  278 (292)
T ss_dssp             HHHHHHHHHH-HTT--------------CTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHH-HcC--------------CHHHHHHHHHHhccCCccHHHHHHHHH
Confidence            432  12211 110              012467778777777777775543333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.31  E-value=0.0027  Score=63.08  Aligned_cols=102  Identities=8%  Similarity=-0.109  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHH
Q 014516          111 LAIEVMIHSKALLL----------------LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRR  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl----------------~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRr  174 (423)
                      ..++++..+..+|.                ++|.+..+|+.+..++...+   .+++++..+..+|..+|++..+|..+.
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg  314 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRA  314 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            35788888999888                88999999999999998875   799999999999999999999999999


Q ss_pred             HHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516          175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (423)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (423)
                      .++..+..        +++.+..+.++++.+|.|-.+|.....+...+.
T Consensus       315 ~~~~~~g~--------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          315 QGWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99988876        789999999999999999999988777766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.16  E-value=0.0042  Score=49.59  Aligned_cols=98  Identities=4%  Similarity=-0.141  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHH
Q 014516          151 DELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDE  230 (423)
Q Consensus       151 ~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E  230 (423)
                      +.+..+..++..+|.++.+|.....++...+.        +.+.+..+.++++.+|.+..+|...+.+....+.  +.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A   72 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGA   72 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHH
Confidence            45778899999999999999999998887765        7899999999999999999999999999887765  7888


Q ss_pred             HHHHHHHHhccCCC--hhHHHHHHHHHHHh
Q 014516          231 LKKSRNWSGLHVAD--NSCFHYRRRLMLRN  258 (423)
Q Consensus       231 L~~~~k~i~~d~~N--~SaW~yR~~Ll~~l  258 (423)
                      +..+.+.+..+|.+  ..+......++..+
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence            99999999988754  34444444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.14  E-value=0.0072  Score=55.76  Aligned_cols=165  Identities=12%  Similarity=0.030  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHHH
Q 014516          112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRRW  175 (423)
Q Consensus       112 ~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRrw  175 (423)
                      .++++.....++.+        +|....+++....+....+   .+++++..+..++..        +|....+|.....
T Consensus        43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            46777777777774        7888899999999988875   789999999999876        4666777777777


Q ss_pred             HHHHhhhccChhHHhHHHHHHHHHHHHHhc--------CCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc-------
Q 014516          176 VINMISRNCSTLQWIIERESELVEKIAERS--------KMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL-------  240 (423)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~--------pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~-------  240 (423)
                      ++...+.        +.+.+.++.++++..        |....+|.....+....+.  +.+.++++.+.+..       
T Consensus       120 ~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          120 LYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence            7766554        567777777777764        6677778888887766654  78888888888887       


Q ss_pred             -cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHh---------hcCCCccHHHHHHHHH
Q 014516          241 -HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIK---------QYVGREALWLHRRFLS  309 (423)
Q Consensus       241 -d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~---------~~p~neSaW~yrr~Ll  309 (423)
                       ++....+|.....+.....                    -+++.+.+..+++.         ..+.+...|.....+.
T Consensus       190 ~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQG--------------------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE  248 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence             6666667777776666542                    14455555555554         3466667777755544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0034  Score=49.04  Aligned_cols=69  Identities=4%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC
Q 014516          129 FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (423)
Q Consensus       129 ~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (423)
                      ...+|..++.+....+   .+.+++..+..++..+|+++.+|..+..++..++.        +++.+..+.++++.+|.+
T Consensus         3 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQG---LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCc
Confidence            3456777777776664   67888888888888888888888888877777665        677788888888888877

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.12  E-value=0.0045  Score=46.50  Aligned_cols=82  Identities=15%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCC
Q 014516          128 DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (423)
Q Consensus       128 e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (423)
                      .+..+|.....+....+   .+.+++..+..++..+|.+..+|.....++...+.        +++.+..+.++++.+|.
T Consensus         7 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQG---DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCC
Confidence            45667777777776664   67888888888888888888888888877776654        67788888888888888


Q ss_pred             CchhchHHHHHHH
Q 014516          208 NYRAWNHRCWLVS  220 (423)
Q Consensus       208 NY~AW~hR~wll~  220 (423)
                      +..+|.....+..
T Consensus        76 ~~~~~~~l~~~~~   88 (91)
T 1na3_A           76 NAEAKQNLGNAKQ   88 (91)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8877776665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.10  E-value=0.0049  Score=56.92  Aligned_cols=132  Identities=7%  Similarity=-0.047  Sum_probs=97.7

Q ss_pred             chHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC--------CCchhHhHHHH
Q 014516          111 LAIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS--------PKSEQAWSHRR  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n--------PK~y~~W~hRr  174 (423)
                      ..++++.....++.+        +|....+++....+....+   .+++++.++..++...        |....+|....
T Consensus        84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  160 (311)
T 3nf1_A           84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA  160 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            457888888888877        5778889999999888875   7899999999998763        66667777777


Q ss_pred             HHHHHhhhccChhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------
Q 014516          175 WVINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------  240 (423)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------  240 (423)
                      .++...+.        +.+.+.++.++++.        +|....+|.....+....+.  +++.+..+.+.+..      
T Consensus       161 ~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          161 LLCQNQGK--------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             HHHHTTTC--------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcC
Confidence            77766554        67888888888887        77777888888888877655  67778888887753      


Q ss_pred             ---cCCChhHHHHHHHHH
Q 014516          241 ---HVADNSCFHYRRRLM  255 (423)
Q Consensus       241 ---d~~N~SaW~yR~~Ll  255 (423)
                         ++.+...|.....+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~  248 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEERE  248 (311)
T ss_dssp             C------CCHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHH
Confidence               444555555554433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.07  E-value=0.01  Score=47.01  Aligned_cols=114  Identities=4%  Similarity=-0.084  Sum_probs=85.4

Q ss_pred             CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       165 K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      +...+|.....+....+.        +...+.+..++++.+|.+..+|.....+....+.  +.+.+.++.+.+..+|.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKD--------FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--YNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcccc
Confidence            344556666655554443        7889999999999999999999999888877654  889999999999998877


Q ss_pred             -------hhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          245 -------NSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       245 -------~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                             ..+|..+..+...+.                    .+++.+++...++..+| +..++.....+.
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~--------------------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEE--------------------KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence                   666666665555431                    36778889999999888 566666655444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.06  E-value=0.0019  Score=51.02  Aligned_cols=75  Identities=8%  Similarity=-0.049  Sum_probs=64.6

Q ss_pred             hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          125 LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       125 ~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      .+|++..+|...+.++...+   .+++++..+..++..+|++..+|.....++..++.        +++.+..+.++++.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD---NASRALALFEELVETDPDYVGTYYHLGKLYERLDR--------TDDAIDTYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhh
Confidence            58999999999999998876   79999999999999999999999999999988876        68888999999988


Q ss_pred             cCCCch
Q 014516          205 SKMNYR  210 (423)
Q Consensus       205 ~pkNY~  210 (423)
                      .|++-.
T Consensus        71 ~~~~~~   76 (100)
T 3ma5_A           71 AREEGT   76 (100)
T ss_dssp             HHHHSC
T ss_pred             hhcCCc
Confidence            776433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.99  E-value=0.11  Score=47.62  Aligned_cols=163  Identities=5%  Similarity=-0.139  Sum_probs=119.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH----hhhccC
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM----ISRNCS  185 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~----l~~~~~  185 (423)
                      ..++++.++..++.  |.+..+|.....+..... ...++++++.++..++..+  +..+|.....++..    ...   
T Consensus        21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~---   93 (273)
T 1ouv_A           21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN---   93 (273)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC---
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC---
Confidence            35778888888887  788899999998887710 1137899999999999886  78888888887776    332   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHh----cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhc
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF----MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEG  261 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~  261 (423)
                           +.+.+..+.++++.+  +..++.....+...    .+  ..++.+.+..+.++.+  +..++.....+...-...
T Consensus        94 -----~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~  162 (273)
T 1ouv_A           94 -----TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR--DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT  162 (273)
T ss_dssp             -----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             -----HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC
Confidence                 678888999998874  77888888888776    43  4788899999999876  667777777666541100


Q ss_pred             ccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          262 FCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                      ..-+++.+.+..+++..  ++..+++....++
T Consensus       163 ----------------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  192 (273)
T 1ouv_A          163 ----------------PKDLKKALASYDKACDL--KDSPGCFNAGNMY  192 (273)
T ss_dssp             ----------------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             ----------------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence                            01267788888888875  4556666654443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.98  E-value=0.01  Score=53.69  Aligned_cols=131  Identities=8%  Similarity=-0.034  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh--------CCCchhHhHHHH
Q 014516          111 LAIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY--------SPKSEQAWSHRR  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~--------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~--------nPK~y~~W~hRr  174 (423)
                      ..++++..+..++.+        +|....+|+....+....+   .+++++..+..++..        +|....+|....
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  134 (283)
T 3edt_B           58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA  134 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357888888888877        5778889999999988875   789999999999987        577788888888


Q ss_pred             HHHHHhhhccChhHHhHHHHHHHHHHHHHh--------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------
Q 014516          175 WVINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------  240 (423)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------  240 (423)
                      .++..++.        +++.+.++.++++.        +|.+..++.....+....+.  +++.+....+.+..      
T Consensus       135 ~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~  204 (283)
T 3edt_B          135 LLCQNQGK--------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYKEILTRAHEKEF  204 (283)
T ss_dssp             HHHHTTTC--------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCC--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcC
Confidence            88877665        67888888888888        88888889888888877765  77888888888875      


Q ss_pred             ---cCCChhHHHHHHHH
Q 014516          241 ---HVADNSCFHYRRRL  254 (423)
Q Consensus       241 ---d~~N~SaW~yR~~L  254 (423)
                         ++.+...|.....+
T Consensus       205 ~~~~~~~~~~~~~~~~~  221 (283)
T 3edt_B          205 GSVNGDNKPIWMHAEER  221 (283)
T ss_dssp             SSCCSSCCCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHH
Confidence               55666666665543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.87  E-value=0.017  Score=55.40  Aligned_cols=118  Identities=6%  Similarity=-0.067  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHhh
Q 014516          112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMIS  181 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l~  181 (423)
                      .++++..+..++.++|++.    .+|.....+....+   .+.+.+..+..++..      .|....+|.....+....+
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            5788889999999999884    57888888877765   788888888888765      3445667777777776665


Q ss_pred             hccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcCh------------------hhHHHHHHHHHHH
Q 014516          182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTR------------------EQVLDELKKSRNW  237 (423)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~------------------~~~~~EL~~~~k~  237 (423)
                      .        +.+.+.++.++++..|++-.      ++...+.+....+.                  ..+.+.+.++.+.
T Consensus       102 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  173 (406)
T 3sf4_A          102 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN  173 (406)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             C--------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            4        57777888888887776533      66666666554432                  0156666666666


Q ss_pred             Hhc
Q 014516          238 SGL  240 (423)
Q Consensus       238 i~~  240 (423)
                      +..
T Consensus       174 l~~  176 (406)
T 3sf4_A          174 LSL  176 (406)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.80  E-value=0.012  Score=57.14  Aligned_cols=159  Identities=6%  Similarity=-0.090  Sum_probs=109.1

Q ss_pred             chHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMI  180 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l  180 (423)
                      ..++++..+..++.++|++.    .+|+....+....+   .+++.+..+..++..      +|....+|.....++...
T Consensus        63 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           63 DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG---DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            35789999999999999987    58888888888775   789999999999887      677778888888888776


Q ss_pred             hhccChhHHhHHHHHHHHHHHHHh------cCCCchhchHHHHHHHhcCh---------------hhHHHHHHHHHHHHh
Q 014516          181 SRNCSTLQWIIERESELVEKIAER------SKMNYRAWNHRCWLVSFMTR---------------EQVLDELKKSRNWSG  239 (423)
Q Consensus       181 ~~~~~~~~~~~~~EL~~~~~~l~~------~pkNY~AW~hR~wll~~~~~---------------~~~~~EL~~~~k~i~  239 (423)
                      +.        +.+.+..+.++++.      +|....+|.....+....+.               ..++..+.++.+.+.
T Consensus       140 g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  211 (411)
T 4a1s_A          140 GR--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK  211 (411)
T ss_dssp             TC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            65        56777777777777      55666677777777665432               015666777766665


Q ss_pred             cc------CCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          240 LH------VADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       240 ~d------~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                      ..      +....+|..+..+.....                    -+++.+.+..+++...+.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          212 LMRDLGDRGAQGRACGNLGNTYYLLG--------------------DFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHhcCC
Confidence            42      222235555554444321                    245566666666666554433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.74  E-value=0.062  Score=49.39  Aligned_cols=159  Identities=6%  Similarity=-0.074  Sum_probs=104.9

Q ss_pred             chHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh------CCCchhHhHHHHHHHHHh
Q 014516          111 LAIEVMIHSKALLLLSCDF----ATAWNSRKLIVSNKRLLPILMDELHLSALVLSY------SPKSEQAWSHRRWVINMI  180 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~----~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~------nPK~y~~W~hRrwll~~l  180 (423)
                      ..++++.....++..+|++    ..+++....+....+   .+.+.+..+..++..      .|....+|.....+....
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH---DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            3588999999999999998    467888888887775   789999999988876      455566777777777666


Q ss_pred             hhccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcCh------------------hhHHHHHHHHHH
Q 014516          181 SRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTR------------------EQVLDELKKSRN  236 (423)
Q Consensus       181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~------------------~~~~~EL~~~~k  236 (423)
                      +.        +.+.+..+.++++..|+.-.      ++.....+....+.                  ..+.+.+....+
T Consensus        97 g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           97 GN--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             cC--------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            54        67888888888888776544      66666666655432                  015666666666


Q ss_pred             HHhc------cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCcc
Q 014516          237 WSGL------HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREA  300 (423)
Q Consensus       237 ~i~~------d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neS  300 (423)
                      .+..      .+....++.....+....                    .-+++.+.+..+++...+.+..
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLL--------------------GNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHHHHHhcCC
Confidence            6554      222223444444444332                    1245666666776666554433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.70  E-value=0.0045  Score=47.81  Aligned_cols=57  Identities=9%  Similarity=-0.018  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHHhCCCchh-HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516          148 ILMDELHLSALVLSYSPKSEQ-AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~-~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      .+++++..+..++..+|++.. +|..+..++..++.        +.+.+..+.++++.+|.+..+|
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--------WQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHH
Confidence            445555555555555555555 55555555544433        4455555555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.70  E-value=0.013  Score=43.93  Aligned_cols=83  Identities=12%  Similarity=0.022  Sum_probs=69.6

Q ss_pred             CchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       165 K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      .+..+|.....+....+.        +.+.+..+.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence            456677777776666554        7889999999999999999999999999887765  889999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 014516          245 NSCFHYRRRLMLR  257 (423)
Q Consensus       245 ~SaW~yR~~Ll~~  257 (423)
                      ..+|..+..+...
T Consensus        77 ~~~~~~l~~~~~~   89 (91)
T 1na3_A           77 AEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888776554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.66  E-value=0.0055  Score=47.28  Aligned_cols=58  Identities=9%  Similarity=-0.080  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH
Q 014516          112 AIEVMIHSKALLLLSCDFAT-AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH  172 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~T-aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h  172 (423)
                      .++++..+..++..+|++.. +|..++.+....+   .+++++..+..++..+|++..+|.+
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            57899999999999999999 9999999998876   7899999999999999999999865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.63  E-value=0.14  Score=46.77  Aligned_cols=147  Identities=5%  Similarity=-0.133  Sum_probs=111.1

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHH----hhhccChhHHhHHHHHHHHHHH
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINM----ISRNCSTLQWIIERESELVEKI  201 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~----l~~~~~~~~~~~~~EL~~~~~~  201 (423)
                      +|.+..++.....+....+   ++++++.++..++.  |.+..+|.....++..    ...        +.+.+.+..++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~--------~~~A~~~~~~a   68 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEK---DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKN--------LKKAASFYAKA   68 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCC--------HHHHHHHHHHH
Confidence            5788899999999888875   78999999999998  7888999888877776    332        68889999999


Q ss_pred             HHhcCCCchhchHHHHHHHh----cChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhch
Q 014516          202 AERSKMNYRAWNHRCWLVSF----MTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVET  277 (423)
Q Consensus       202 l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~  277 (423)
                      ++.+  +..+|...+.+...    .+  .+.+.+.+..+.+..+  +..++.....+...-...                
T Consensus        69 ~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~----------------  126 (273)
T 1ouv_A           69 CDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVV----------------  126 (273)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSS----------------
T ss_pred             HHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCc----------------
Confidence            9886  78888888888776    43  4788999999999884  778888888777652100                


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          278 YQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       278 ~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      ..-+++.+.+..+++..+  +..+++....++
T Consensus       127 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~  156 (273)
T 1ouv_A          127 TRDFKKAVEYFTKACDLN--DGDGCTILGSLY  156 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            012677888888888754  566776655544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.62  E-value=0.0053  Score=48.37  Aligned_cols=73  Identities=12%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516          162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH  241 (423)
Q Consensus       162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d  241 (423)
                      .+|+++.+|.....++...+.        +++.+..+.++++.+|.+..+|...+.+...++.  +++.++.+++.+..+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN--------ASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVA   71 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence            589999999999999887765        7899999999999999999999999999988765  788899999998876


Q ss_pred             CCC
Q 014516          242 VAD  244 (423)
Q Consensus       242 ~~N  244 (423)
                      +.+
T Consensus        72 ~~~   74 (100)
T 3ma5_A           72 REE   74 (100)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.59  E-value=0.03  Score=53.20  Aligned_cols=158  Identities=5%  Similarity=-0.076  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~~  179 (423)
                      .++++..+..++.+.+..      ..+++....+....+   .+++++..+..++...++.      ..+++....++..
T Consensus        52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ---RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            477888888888776533      456777777777665   6788999999988765432      2445555555443


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHH----
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFH----  249 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~----  249 (423)
                       +.        +++.+.+..++++.+|..      ..++.....+...++.  +.+.+.++++.+...+.+..-+.    
T Consensus       129 -g~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (307)
T 2ifu_A          129 -LD--------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKK  197 (307)
T ss_dssp             -TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -CC--------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence             22        688889999999988764      3556666777666654  88999999999998776543221    


Q ss_pred             --HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          250 --YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       250 --yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                        .+..+...+                    .-+.+.+.+..+++ .+|++......
T Consensus       198 ~~~~g~~~~~~--------------------g~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          198 CIAQVLVQLHR--------------------ADYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             HHHHHHHHHHT--------------------TCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             HHHHHHHHHHc--------------------CCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence              111111111                    13678889999999 99988765544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.53  E-value=0.028  Score=54.56  Aligned_cols=154  Identities=6%  Similarity=-0.112  Sum_probs=114.5

Q ss_pred             chHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------hHhHHHHHHH
Q 014516          111 LAIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------QAWSHRRWVI  177 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------~~W~hRrwll  177 (423)
                      ..++++..+..++.+      ++....+++..+.+....+   .+.+++..+..++...++..       .+++....+.
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK---QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            357889999999887      3446688888998888875   78999999999998755543       3555556666


Q ss_pred             HHhhhccChhHHhHHHHHHHHHHHHHhcCCCc------hhchHHHHHHHhcChhhHHHHHHHHHHHHh-----cc-CCCh
Q 014516          178 NMISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLDELKKSRNWSG-----LH-VADN  245 (423)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~-----~d-~~N~  245 (423)
                      ..++.        +++.+....++++..+++-      .++...+++...++.  +++.+.+..+.+.     .+ |...
T Consensus       195 ~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          195 LDLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHH
Confidence            55554        6888899999998877664      378888888877765  8889999999998     56 6667


Q ss_pred             hHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          246 SCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       246 SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                      .++.....+...+.                    -+++.+.+..+++...+.
T Consensus       265 ~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          265 QAYFLITQIHYKLG--------------------KIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHHH
Confidence            77877777766642                    256677777777766443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.018  Score=44.69  Aligned_cols=83  Identities=1%  Similarity=-0.129  Sum_probs=68.1

Q ss_pred             chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC-
Q 014516          166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD-  244 (423)
Q Consensus       166 ~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N-  244 (423)
                      +..+|..+..+....+.        +.+.+..+.++++.+|.+..+|..++.+...++.  +++.+..+.+.+..+|.+ 
T Consensus         3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~   72 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAE   72 (111)
T ss_dssp             HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTT
T ss_pred             hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcc
Confidence            45667777766665544        7899999999999999999999999999988765  889999999999999999 


Q ss_pred             -----hhHHHHHHHHHHHh
Q 014516          245 -----NSCFHYRRRLMLRN  258 (423)
Q Consensus       245 -----~SaW~yR~~Ll~~l  258 (423)
                           ..++..+..+...+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~   91 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAV   91 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence                 66666666665554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.16  E-value=0.05  Score=52.04  Aligned_cols=154  Identities=8%  Similarity=-0.069  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~  179 (423)
                      .++++.....++.+      .|....+++....+....+   .+++++..+..++...|+...      +|.....+...
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            56777777777776      5666778888888888775   789999999999987776654      77777777766


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC------hhH
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD------NSC  247 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N------~Sa  247 (423)
                      .+.        +.+.+..+.++++..|++      ..++...+.+....+.  +.+.+.++.+.+...+..      ..+
T Consensus       240 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~  309 (406)
T 3sf4_A          240 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELNDRIGEGRA  309 (406)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCC--------hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            654        678889999999888876      5666667777666554  788888888888875544      334


Q ss_pred             HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516          248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGR  298 (423)
Q Consensus       248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~n  298 (423)
                      +..+..+....                    .-+++.+++..+++...+..
T Consensus       310 ~~~la~~~~~~--------------------g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          310 CWSLGNAYTAL--------------------GNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHh
Confidence            44444444432                    12566777777777665444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.05  E-value=0.078  Score=51.29  Aligned_cols=154  Identities=5%  Similarity=-0.041  Sum_probs=104.7

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch----hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE----QAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y----~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (423)
                      +|.....+..++..+...+   .+.+++.++..++..+|++.    .+|.....+....+.        +.+.+..+.++
T Consensus        44 ~~~~~~~l~~~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~a  112 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAG---DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------YNKAMQYHKHD  112 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence            3444555566677776665   78999999999999999987    477777777776654        67788888888


Q ss_pred             HHh------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc------cCCChhHHHHHHHHHHHhhhcccccCCCC
Q 014516          202 AER------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL------HVADNSCFHYRRRLMLRNLEGFCYTQDNN  269 (423)
Q Consensus       202 l~~------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~------d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~  269 (423)
                      ++.      +|....+|...+.+....+.  +.+.+..+.+.+..      ++....++..+..+..........   ..
T Consensus       113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---~~  187 (411)
T 4a1s_A          113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ---RN  187 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH---HS
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc---cc
Confidence            887      68888899999988887765  77788888888777      555566777777776654320000   00


Q ss_pred             CCCchhchHHHHHHHHHHHHHHHhhc
Q 014516          270 SSGYFVETYQIWKEELDWNESLIKQY  295 (423)
Q Consensus       270 ~~~~~~~~~~~~~eEL~~~~~~I~~~  295 (423)
                      ......+....+++.+++..+++...
T Consensus       188 ~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          188 PGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            00001122344677777777776653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.86  E-value=0.057  Score=49.63  Aligned_cols=153  Identities=8%  Similarity=-0.067  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~  179 (423)
                      .++++.....++.+      .|....++.....+....+   .+++.+..+..++...|+...      +|.....++..
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            46677777777665      4555667888888877765   789999999999987666543      67777777666


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh------H
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS------C  247 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S------a  247 (423)
                      .+.        +.+.+.++.++++..+++      ..++.....+....+.  +++.+.+..+.+...+....      +
T Consensus       236 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~  305 (338)
T 3ro2_A          236 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRA  305 (338)
T ss_dssp             HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            654        678888888888887776      5566666666666554  77888888888876554332      4


Q ss_pred             HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                      +.....+....                    .-+++.+.+..+++...+.
T Consensus       306 ~~~la~~~~~~--------------------g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          306 CWSLGNAYTAL--------------------GNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHH--------------------TCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHh
Confidence            44444443332                    1356777888887776543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.35  E-value=1.7  Score=40.17  Aligned_cols=135  Identities=10%  Similarity=-0.036  Sum_probs=93.1

Q ss_pred             chHHHHHHHHHHHHhCCCcHH-----HHH-HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFAT-----AWN-SRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVIN  178 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~T-----aWn-~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~  178 (423)
                      ..+++++....++...|....     .|. ....+....   ..+++++..+..+|...++.      ..+|+....+..
T Consensus        90 ~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK---VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            357899999999988876432     222 233333433   37899999999999877665      456777777776


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHH---HhcCCCc----hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC--C----h
Q 014516          179 MISRNCSTLQWIIERESELVEKIA---ERSKMNY----RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA--D----N  245 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l---~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~--N----~  245 (423)
                      ..+.        +++.+.++.+++   +..|.+.    .++...+.+...++.  +++.+.++++.+.....  +    .
T Consensus       167 ~~~~--------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          167 ENGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HcCC--------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            6654        678888998888   5555533    577788888877655  88999999998876532  1    3


Q ss_pred             hHHHHHHHHHHHh
Q 014516          246 SCFHYRRRLMLRN  258 (423)
Q Consensus       246 SaW~yR~~Ll~~l  258 (423)
                      .++...+.+...+
T Consensus       237 ~~~~~lg~~y~~~  249 (293)
T 2qfc_A          237 QLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            4555555555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.25  E-value=0.047  Score=52.49  Aligned_cols=167  Identities=7%  Similarity=-0.127  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH-HH--------
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSR-------KLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH-RR--------  174 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~R-------k~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h-Rr--------  174 (423)
                      ....+++.+..++.++|+..-+|+.|       ..+|....   ...+.+......+...|.....|.. -.        
T Consensus        21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~---r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW---YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH---HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH---HHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            35789999999999999999999999       78887764   3345566666667766766655554 11        


Q ss_pred             ------------HHHHHhhhccC-----------hh--------------HHhHHHHHHHHHHHHHhcCCCc---hhchH
Q 014516          175 ------------WVINMISRNCS-----------TL--------------QWIIERESELVEKIAERSKMNY---RAWNH  214 (423)
Q Consensus       175 ------------wll~~l~~~~~-----------~~--------------~~~~~~EL~~~~~~l~~~pkNY---~AW~h  214 (423)
                                  -++...+....           ..              ..-|.+.+..+..+... |.++   .++.+
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHHH
Confidence                        11211111000           00              01134444444433332 2222   36666


Q ss_pred             HHHHHHhcChhhHHHHHHHHHHHHhcc--CC-ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHH
Q 014516          215 RCWLVSFMTREQVLDELKKSRNWSGLH--VA-DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESL  291 (423)
Q Consensus       215 R~wll~~~~~~~~~~EL~~~~k~i~~d--~~-N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~  291 (423)
                      .+-++..++.  +.+.+.+..+.+...  |. ...++.++..++.++.                    ..++......++
T Consensus       177 LG~al~~LG~--~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG--------------------r~deA~~~l~~a  234 (282)
T 4f3v_A          177 HGVAAANLAL--FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG--------------------NESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT--------------------CHHHHHHHHHHH
T ss_pred             HHHHHHHCCC--HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHH
Confidence            6767766654  677788888877544  44 3457888887777752                    256778888999


Q ss_pred             HhhcCCCccHHHH
Q 014516          292 IKQYVGREALWLH  304 (423)
Q Consensus       292 I~~~p~neSaW~y  304 (423)
                      +..+|+ .-+|.-
T Consensus       235 ~a~~P~-~~~~~a  246 (282)
T 4f3v_A          235 QTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHSCC-HHHHHH
T ss_pred             HhcCCc-HHHHHH
Confidence            999998 655544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.06  E-value=0.28  Score=47.39  Aligned_cols=146  Identities=5%  Similarity=-0.068  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh---CCC---chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSY---SPK---SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~---nPK---~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      ..+.+++.+....+   .+++++..+..++..   .|.   ...+++...++...++.        +...+..+.++++.
T Consensus       104 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~  172 (383)
T 3ulq_A          104 YFNFFRGMYELDQR---EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--------TYFSMDYARQAYEI  172 (383)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence            35556888877765   799999999999986   232   45778888888877665        67888899999988


Q ss_pred             cCCCc-------hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh------hHHHHHHHHHHHhhhcccccCCCCCC
Q 014516          205 SKMNY-------RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN------SCFHYRRRLMLRNLEGFCYTQDNNSS  271 (423)
Q Consensus       205 ~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~------SaW~yR~~Ll~~l~~~~~~~~~~~~~  271 (423)
                      .++.-       .++...+.+...++.  +++.+.+..+.+...+.+.      .+++..+.+...+.            
T Consensus       173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g------------  238 (383)
T 3ulq_A          173 YKEHEAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS------------  238 (383)
T ss_dssp             HHTCSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred             HHhCccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC------------
Confidence            66553       356666666666554  7888999999888755443      36666666655431            


Q ss_pred             CchhchHHHHHHHHHHHHHHHh-----hc-CCCccHHHHHHHHH
Q 014516          272 GYFVETYQIWKEELDWNESLIK-----QY-VGREALWLHRRFLS  309 (423)
Q Consensus       272 ~~~~~~~~~~~eEL~~~~~~I~-----~~-p~neSaW~yrr~Ll  309 (423)
                              .+++.+.+..+++.     .+ |....++.....+.
T Consensus       239 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          239 --------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH  274 (383)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence                    26777888888877     34 55555555544443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.95  E-value=0.6  Score=43.41  Aligned_cols=134  Identities=8%  Similarity=-0.032  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHhCCCcHH----H-HHH-HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh------HhHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFAT----A-WNS-RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ------AWSHRRWVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~T----a-Wn~-Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~------~W~hRrwll~~  179 (423)
                      .++++.....++...+....    + |.. .+.+...   ...+++++..+..+|...++...      +++.-..+...
T Consensus        91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            57888888888887766544    2 222 2222222   24789999999999997666544      45555555554


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHh-------cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC------hh
Q 014516          180 ISRNCSTLQWIIERESELVEKIAER-------SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD------NS  246 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~-------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N------~S  246 (423)
                      ++.        ++..+.+..++++.       .+....++...+.+...++.  +++.+.++.+.+...+..      -.
T Consensus       168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            443        67788888888842       23333477778888777654  888999999998876444      35


Q ss_pred             HHHHHHHHHHHh
Q 014516          247 CFHYRRRLMLRN  258 (423)
Q Consensus       247 aW~yR~~Ll~~l  258 (423)
                      ++..++.+..++
T Consensus       238 ~~~~lg~~~~~~  249 (293)
T 3u3w_A          238 LYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            666677666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.13  E-value=1.3  Score=47.60  Aligned_cols=164  Identities=9%  Similarity=-0.056  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHH-HHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDEL-HLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL-~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++...++.+|..+|.++.+|..-..++...+   ...+.. .++..++..+|++..+|-.-.-+....+.        +
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~---~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------~  394 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN---TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------I  394 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS---CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------H
Confidence            34567899999999999999998888777665   345676 88899999999999999876666665543        3


Q ss_pred             HHHHHHHHHHHHh-----------cCC-----------CchhchHHHHHHHhcChhhHHHHHHHHHHHHhc-cCCChhHH
Q 014516          192 ERESELVEKIAER-----------SKM-----------NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL-HVADNSCF  248 (423)
Q Consensus       192 ~~EL~~~~~~l~~-----------~pk-----------NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~-d~~N~SaW  248 (423)
                      +..-.+.+++++.           .|.           +-.+|..-.-+..+.+.  .+..-+.+.++++. .+.....|
T Consensus       395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~ly  472 (679)
T 4e6h_A          395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIY  472 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHH
Confidence            3344444444443           243           22367665444433322  45555666666665 44445555


Q ss_pred             HHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHH-HHHHHH
Q 014516          249 HYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALW-LHRRFL  308 (423)
Q Consensus       249 ~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW-~yrr~L  308 (423)
                      -.-..+-.++..                   -.+........++...|++...| .|..++
T Consensus       473 i~~A~lE~~~~~-------------------d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          473 LENAYIEYHISK-------------------DTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHTTTS-------------------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-------------------CHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            543332222110                   02344455566677778888888 454443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.12  E-value=1.6  Score=43.47  Aligned_cols=155  Identities=9%  Similarity=-0.066  Sum_probs=97.7

Q ss_pred             HHHHhCCCcHHHHHH--HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC-h--hHHhHHHHH
Q 014516          121 ALLLLSCDFATAWNS--RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS-T--LQWIIERES  195 (423)
Q Consensus       121 ~lLl~nPe~~TaWn~--Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~-~--~~~~~~~EL  195 (423)
                      .+...-|++.+||-.  |.+-.........+.+.+.+++.++...|.+..+|..+.++.-.+..... .  ....+..++
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            345667888888875  55433332223457899999999999999999999988887654332211 1  111123333


Q ss_pred             HHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchh
Q 014516          196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFV  275 (423)
Q Consensus       196 ~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~  275 (423)
                      .-+ .++..+|....+  |...-+..+....++..+...++.+.++++ .-+|..+.++..-.                 
T Consensus       265 ~a~-~a~~~~~~~a~~--~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~-----------------  323 (372)
T 3ly7_A          265 DNI-VTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK-----------------  323 (372)
T ss_dssp             HHH-HTCGGGTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT-----------------
T ss_pred             HHH-HhcccCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC-----------------
Confidence            311 344566665444  433322222223588999999999999963 44554555444321                 


Q ss_pred             chHHHHHHHHHHHHHHHhhcCCCc
Q 014516          276 ETYQIWKEELDWNESLIKQYVGRE  299 (423)
Q Consensus       276 ~~~~~~~eEL~~~~~~I~~~p~ne  299 (423)
                         ..+++.++.+.++++++|+.+
T Consensus       324 ---G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          324 ---GMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             ---TCHHHHHHHHHHHHHHSCSHH
T ss_pred             ---CCHHHHHHHHHHHHhcCCCcC
Confidence               136788999999999999886

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.03  E-value=2.8  Score=38.69  Aligned_cols=143  Identities=6%  Similarity=-0.070  Sum_probs=90.2

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHH--HHhhhccChhHHhHHHHHHHHHHHHH
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVI--NMISRNCSTLQWIIERESELVEKIAE  203 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll--~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (423)
                      +|+....+..+.......+   .+++.+.++..++...|+....-..-.|..  ..+....    ..+++.+..+.++++
T Consensus        71 ~~~~~~~l~~~~~~~~~~~---~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQK---RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----VDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence            3444444544444444443   789999999999998887543322222211  1111110    126889999999998


Q ss_pred             hcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHH---hccCCCh----hHHHHHHHHHHHhhhcccccCCCCC
Q 014516          204 RSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWS---GLHVADN----SCFHYRRRLMLRNLEGFCYTQDNNS  270 (423)
Q Consensus       204 ~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i---~~d~~N~----SaW~yR~~Ll~~l~~~~~~~~~~~~  270 (423)
                      ..+++      ..+++..+.+....+.  +++.+.++.+.+   ...+.+.    .++.....+.....           
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-----------  210 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-----------  210 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-----------
Confidence            87766      3466677777766554  788899999888   5555543    46666666665531           


Q ss_pred             CCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          271 SGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       271 ~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                               -+++.+++..+++...+.
T Consensus       211 ---------~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          211 ---------RYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHHHHHHHh
Confidence                     367888888888876543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.98  E-value=0.53  Score=46.84  Aligned_cols=124  Identities=8%  Similarity=-0.009  Sum_probs=83.1

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc---CCc-----CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK---RLL-----PILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS  181 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~---~~~-----~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~  181 (423)
                      +...+++.+.++++.++|++..+|-.+..+-...   +..     ..+..++.- ...+...|..+.++  ..-.+..+.
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~--~alal~~l~  289 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIY--QIKAVSALV  289 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHH--HHHHHHHHh
Confidence            3347899999999999999999998766544211   000     011222221 12234556655544  333222222


Q ss_pred             hccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCCh
Q 014516          182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADN  245 (423)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~  245 (423)
                      ..      -++..+..+++++..+| +..+|.-.+|+....+.  +++.++.+.+.+.++|++.
T Consensus       290 ~g------d~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~--~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          290 KG------KTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM--NREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HT------CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred             CC------CHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence            21      27889999999999996 56788888998887665  8899999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.98  E-value=0.35  Score=37.91  Aligned_cols=74  Identities=12%  Similarity=-0.026  Sum_probs=52.8

Q ss_pred             CCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc
Q 014516          126 SCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (423)
Q Consensus       126 nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (423)
                      +|++..+|..+..++...++.....+...++..+|..+|++..++.....+..+.+.        +...+....++++.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--------y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--------FQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC
Confidence            577778888877777432212345777888888888888888888777766665544        677888888888888


Q ss_pred             CC
Q 014516          206 KM  207 (423)
Q Consensus       206 pk  207 (423)
                      |.
T Consensus        74 p~   75 (93)
T 3bee_A           74 DP   75 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            87

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=93.75  E-value=1.3  Score=42.71  Aligned_cols=153  Identities=5%  Similarity=-0.182  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------hHhHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLS------CDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------QAWSHRRWVIN  178 (423)
Q Consensus       112 ~~~~L~~t~~lLl~n------Pe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------~~W~hRrwll~  178 (423)
                      .++++.....++.+.      |....+++..+.+....+   .+..++..+..++...++..       .+++....+..
T Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK---QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            577888888888763      345567777788877775   78999999999998665532       34445555555


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHh-----ccCCChhH
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSG-----LHVADNSC  247 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~-----~d~~N~Sa  247 (423)
                      .++.        ++..+....++++..++.      ..++...+++....+.  +++.+.+..+.+.     .+|....+
T Consensus       194 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          194 DFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            4443        677778888888764322      2355666777666554  7888999999998     77777777


Q ss_pred             HHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCC
Q 014516          248 FHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVG  297 (423)
Q Consensus       248 W~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~  297 (423)
                      +.....+..+..                    -+++.+.+..+++...+.
T Consensus       264 ~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          264 LFGLSWTLCKAG--------------------QTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHHH
Confidence            777777666541                    267788888998887655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=93.13  E-value=2  Score=36.45  Aligned_cols=104  Identities=5%  Similarity=-0.164  Sum_probs=73.1

Q ss_pred             hCC-CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH------hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516          125 LSC-DFATAWNSRKLIVSNKRLLPILMDELHLSALVLS------YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (423)
Q Consensus       125 ~nP-e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~------~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (423)
                      -+| ....+++....+....+   .+.+.+..+..++.      ..|....+++....+....+.        +++.+..
T Consensus        20 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~   88 (203)
T 3gw4_A           20 AHPATASGARFMLGYVYAFMD---RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRC   88 (203)
T ss_dssp             TSTTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence            355 67788889988888775   78999999999988      445556677777777766654        5677777


Q ss_pred             HHHHHHh---cC----CCchhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516          198 VEKIAER---SK----MNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH  241 (423)
Q Consensus       198 ~~~~l~~---~p----kNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d  241 (423)
                      +.++++.   .+    ..-.++...+.+....+.  +++.+.++.+.+...
T Consensus        89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           89 FLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence            7777776   33    223455566666665544  777788888877653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=92.92  E-value=0.47  Score=44.68  Aligned_cols=125  Identities=8%  Similarity=-0.050  Sum_probs=89.6

Q ss_pred             chHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVIN  178 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe------~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~  178 (423)
                      ..++++.++..+|.+.++      ...+++....+... +   .+++++..+..++...|+.      ..+++....++.
T Consensus        91 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  166 (307)
T 2ifu_A           91 RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV  166 (307)
T ss_dssp             CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            346788888888877443      24577777777766 5   7899999999999987754      456667777776


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCch------hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHH
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHY  250 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~y  250 (423)
                      .++.        +.+.+..+.++++..|++-.      ++.....+...++  .+.+.+.++++.+ .+|....+...
T Consensus       167 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          167 RQQK--------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             HcCC--------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHh-CCCCCCCCHHH
Confidence            6655        78999999999999887643      3333333333333  4788999999999 99987665443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.15  E-value=3.3  Score=36.51  Aligned_cols=166  Identities=6%  Similarity=-0.180  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHH
Q 014516          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (423)
Q Consensus       113 ~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~  192 (423)
                      ++++.++.++...  .+..+++.-..+....+   ++.+++.++..++..  .++.+++.-..++.. ..    +.....
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g----~~~~~~   70 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSG---DYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP----QQADYP   70 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST----TSCCHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC----CCCCHH
Confidence            3455666666654  68888888888887764   789999999999875  577888877766554 21    112367


Q ss_pred             HHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCC--ChhHHHHHHHHHHHhhhcccccCCC
Q 014516          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVA--DNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~--N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                      +.+.+..++++  +.+..|+..-..+...-.  ..++.+.+.+..+.+..+++  +..++.....+...-...       
T Consensus        71 ~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~-------  141 (212)
T 3rjv_A           71 QARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG-------  141 (212)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS-------
T ss_pred             HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC-------
Confidence            88889998865  567788888777764311  23588999999999999884  478888888776652110       


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                               ..-+++.+.+..+++.. |++..+.+....+.
T Consensus       142 ---------~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          142 ---------PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             ---------SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             ---------CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence                     01367889999999987 67777776655544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.64  E-value=2.8  Score=33.29  Aligned_cols=98  Identities=9%  Similarity=-0.048  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (423)
                      .+++....+....+   .+++.+..+..++...++..      .++.....+....+.        +.+.+.++.++++.
T Consensus        10 ~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~   78 (164)
T 3ro3_A           10 RAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence            45666666666654   78899999999888766543      355566666555544        67778888888877


Q ss_pred             cCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHhcc
Q 014516          205 SKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSGLH  241 (423)
Q Consensus       205 ~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d  241 (423)
                      .++.      ..++...+.+....+.  +++.+.++.+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           79 ARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence            6654      4456666666655544  777788888777653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=91.56  E-value=0.83  Score=42.42  Aligned_cols=117  Identities=15%  Similarity=-0.049  Sum_probs=86.7

Q ss_pred             chHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-------CCCchhHhHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSY-------SPKSEQAWSHRRWVI  177 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-------nPK~y~~W~hRrwll  177 (423)
                      ..++++.....+|.+.+..      ..+++.-+.+....+   .+++++..+..+|..       .+....+++....++
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG---YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            4588999999999865443      336788888887775   789999999999852       223345777888887


Q ss_pred             HHhhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHhcChhhHHHHHHHHHHHHh
Q 014516          178 NMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLDELKKSRNWSG  239 (423)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~k~i~  239 (423)
                      ..++.        +++.+.++.++++..+++      -.++...+.+...++. ..++.++++.+.+.
T Consensus       207 ~~~~~--------y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          207 YLDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY-EEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred             HHHhH--------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence            77765        688899999999887665      4577888888877763 25677777777765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.50  E-value=0.66  Score=36.32  Aligned_cols=55  Identities=13%  Similarity=-0.042  Sum_probs=50.2

Q ss_pred             ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc
Q 014516          109 DTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS  166 (423)
Q Consensus       109 ~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~  166 (423)
                      +..++++......+|.++|++..++...+......+   ++++++.....+|..+|.+
T Consensus        22 ~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g---~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           22 QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF---RFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Confidence            355799999999999999999999999999888875   8999999999999999993

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=90.27  E-value=1.8  Score=34.54  Aligned_cols=116  Identities=9%  Similarity=-0.029  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVINM  179 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~------TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~~  179 (423)
                      .++++.....++.+.++..      .+++....+....+   .+++.+.++..++...++.      ..++....++...
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            3566666666666654432      46777777777765   7899999999998865543      4455566666655


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCCc------hhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLDELKKSRNWSGL  240 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~  240 (423)
                      .+.        +++.+..+.++++..++.-      .++.....+....+  .+++.+.++.+.+..
T Consensus       102 ~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          102 LQD--------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLEI  158 (164)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred             Hhh--------HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            544        5677777777776644331      22333333333333  366667777766654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=90.20  E-value=2.4  Score=40.66  Aligned_cols=150  Identities=9%  Similarity=-0.087  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCC----------CCCccchHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHcc
Q 014516           81 VYKAAKHAFISALRQYKTPGNFSGK----------SQDDTLAIEVMIHSKALLLLSCD-------FATAWNSRKLIVSNK  143 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~~~~~----------~~~~~~~~~~L~~t~~lLl~nPe-------~~TaWn~Rk~lL~~~  143 (423)
                      -|..|...|.+++...+...+....          -......+.++.....++.+.++       ...+++..+.+....
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~  195 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF  195 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence            3667777777777644332221000          00112357788888888877543       345677777777777


Q ss_pred             CCcCCHHHHHHHHHHHHHhCCC------chhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHH-----hcCCCchhc
Q 014516          144 RLLPILMDELHLSALVLSYSPK------SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE-----RSKMNYRAW  212 (423)
Q Consensus       144 ~~~~~~~~EL~~~~~lL~~nPK------~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~-----~~pkNY~AW  212 (423)
                      +   .+++++..+..++...++      ...+++...++....+.        ++..+....++++     .+|....++
T Consensus       196 ~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          196 K---HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             C---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            5   789999999999885432      13456666777766654        6788889999998     888888888


Q ss_pred             hHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516          213 NHRCWLVSFMTREQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~  243 (423)
                      ...+.+....+.  +++.+.++++.+.....
T Consensus       265 ~~la~~~~~~g~--~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          265 FGLSWTLCKAGQ--TQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence            888888877765  78899999999987544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=89.35  E-value=11  Score=33.10  Aligned_cols=168  Identities=9%  Similarity=-0.070  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      .++++.++.+++..  .+..+++.-..+....+...+..+.+.++..++.  +.++.+++.-..++..-..    +...+
T Consensus        34 ~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g----~~~d~  105 (212)
T 3rjv_A           34 YQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQA----GATDV  105 (212)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGG----SSCCH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC----CccCH
Confidence            47888888888764  6888999888887764333478999999999865  5688888877766643111    11237


Q ss_pred             HHHHHHHHHHHHhcC--CCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          192 ERESELVEKIAERSK--MNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       192 ~~EL~~~~~~l~~~p--kNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                      .+.+.+..++++..|  .+-.|+..-..+...-.  ..+..+.+.+..+.+.. +.+..++.....+...-... .    
T Consensus       106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg-~----  179 (212)
T 3rjv_A          106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKG-F----  179 (212)
T ss_dssp             HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTT-T----
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCC-C----
Confidence            889999999999998  45788888887776521  23588899999999998 66667877777665542110 0    


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                               ...-+++.+.+...++..  ++..+-..
T Consensus       180 ---------~~~d~~~A~~~~~~A~~~--g~~~A~~~  205 (212)
T 3rjv_A          180 ---------IEPNKQKALHWLNVSCLE--GFDTGCEE  205 (212)
T ss_dssp             ---------BCCCHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHc--CCHHHHHH
Confidence                     001256778888888764  45555444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=88.77  E-value=6.6  Score=39.12  Aligned_cols=161  Identities=14%  Similarity=-0.036  Sum_probs=108.6

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516          118 HSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (423)
Q Consensus       118 ~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (423)
                      +...+..-+|+   +++....+....+...+..+.+.++..++..+|.....++.-..++......    .....+.+..
T Consensus       167 ~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~----~~d~~~A~~~  239 (452)
T 3e4b_A          167 ICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG----TPDEKTAQAL  239 (452)
T ss_dssp             HHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS----SCCHHHHHHH
T ss_pred             HHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC----CCCHHHHHHH
Confidence            34444444554   7777777666644233678889999999999998888877666665432211    1236788888


Q ss_pred             HHHHHHhcCCCchhchHHHHH-HHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhc
Q 014516          198 VEKIAERSKMNYRAWNHRCWL-VSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVE  276 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wl-l~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~  276 (423)
                      ..+++   |.+-.++..-..+ .......+..+.+.++.+.++.+  +..|+.....+...-  .+.             
T Consensus       240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G--~g~-------------  299 (452)
T 3e4b_A          240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEG--KWV-------------  299 (452)
T ss_dssp             HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHC--SSS-------------
T ss_pred             HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcC--CCC-------------
Confidence            88887   8888899888887 42223346788889999888654  778888887766531  100             


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          277 TYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       277 ~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                       ..-+.+.+.+..++.   +++..+++....++
T Consensus       300 -~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          300 -PADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             -CCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence             012567788888877   88888888776554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=88.69  E-value=18  Score=35.82  Aligned_cols=165  Identities=5%  Similarity=-0.110  Sum_probs=105.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcc--CCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK--RLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~--~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      ..++++.++..++..  .+..++.....+....  +...+.++.+.++..++..  .+..++.....++...+.     .
T Consensus       274 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~-----~  344 (490)
T 2xm6_A          274 EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGS-----E  344 (490)
T ss_dssp             CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC-----H
T ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----c
Confidence            356677777776543  5666777777666554  1123677777777777765  345677776666655321     1


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccC
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQ  266 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~  266 (423)
                      ......+.++.++++.  .+-.+|.+-.++...-.  ..+..+.+.+..+.++.+  +-.++.....+...-.+.     
T Consensus       345 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~-----  415 (490)
T 2xm6_A          345 EEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV-----  415 (490)
T ss_dssp             HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS-----
T ss_pred             ccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC-----
Confidence            2367778888888876  46778888877776511  134777888888888764  567777777766541100     


Q ss_pred             CCCCCCchhchHHHHHHHHHHHHHHHhhcCC---CccHHHH
Q 014516          267 DNNSSGYFVETYQIWKEELDWNESLIKQYVG---REALWLH  304 (423)
Q Consensus       267 ~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~---neSaW~y  304 (423)
                                 ..-+++.+.+.++++..+|+   |..++.+
T Consensus       416 -----------~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~  445 (490)
T 2xm6_A          416 -----------ERDYVQAWAWFDTASTNDMNLFGTENRNIT  445 (490)
T ss_dssp             -----------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             -----------CCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence                       01257788888899888844   6655554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=88.30  E-value=1.5  Score=41.91  Aligned_cols=118  Identities=5%  Similarity=-0.112  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc--hhHhHHHHHHHHHhhhccChhHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS--EQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~--y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      .+++.+.+..++..+|++. +...|..+....+   ++.+.+..+..+....+..  ..++.+...++..++.       
T Consensus       118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~---r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-------  186 (282)
T 4f3v_A          118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE---RWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-------  186 (282)
T ss_dssp             HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT---CHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC---CHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-------
Confidence            4778888888888899998 8888888777764   8999999998776643222  3478888988888876       


Q ss_pred             hHHHHHHHHHHHHHhc--CC-CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516          190 IIERESELVEKIAERS--KM-NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~--pk-NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~  243 (423)
                       +.+.+....+++...  |. .-.++.++..++..++.  .++......+++..+|.
T Consensus       187 -~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          187 -FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             -HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCc
Confidence             688999999998654  66 34599999999999987  68889999999999997

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=87.35  E-value=14  Score=34.61  Aligned_cols=120  Identities=13%  Similarity=-0.102  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhH------hHHHHHHHHHh
Q 014516          112 AIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQA------WSHRRWVINMI  180 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~T-----aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~------W~hRrwll~~l  180 (423)
                      .++++.....+|...|....     +++....+....+   .+.+.+..+..++...|+....      ......+....
T Consensus        30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            57788888888888876532     5566666666554   7889999999998876654333      23344444333


Q ss_pred             hhccChhHHhHHHHHHHHHHHHHhcCC--------CchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCC
Q 014516          181 SRNCSTLQWIIERESELVEKIAERSKM--------NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVAD  244 (423)
Q Consensus       181 ~~~~~~~~~~~~~EL~~~~~~l~~~pk--------NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N  244 (423)
                      +.        +.+.+..+.++++..++        ...++.....+....+.  +++....+.+.+...+..
T Consensus       107 G~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          107 GF--------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             TC--------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTS
T ss_pred             CC--------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcc
Confidence            33        67777888888876643        23344455666555544  788889999998877653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=86.91  E-value=4.7  Score=34.00  Aligned_cols=115  Identities=9%  Similarity=-0.120  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHH------hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh---CCCc----hhHhHHHHHHHHH
Q 014516          113 IEVMIHSKALLL------LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY---SPKS----EQAWSHRRWVINM  179 (423)
Q Consensus       113 ~~~L~~t~~lLl------~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~---nPK~----y~~W~hRrwll~~  179 (423)
                      ++++.....++.      ..|....+++....+....+   .+++.+..+..++..   .+..    ..+++....+...
T Consensus        43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  119 (203)
T 3gw4_A           43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG---NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH  119 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            455555555555      44556677888888887775   789999999998886   4422    3456666666666


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCCchh------chHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRA------WNHRCWLVSFMTREQVLDELKKSRNWSGL  240 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A------W~hR~wll~~~~~~~~~~EL~~~~k~i~~  240 (423)
                      .+.        +++.+..+.++++..++.-..      +.....+....+.  +.+.+.+..+.+..
T Consensus       120 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~  176 (203)
T 3gw4_A          120 FGD--------LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWLRARDI  176 (203)
T ss_dssp             HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             hCC--------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHH
Confidence            554        567777777777654433222      2333444444333  66666666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=84.83  E-value=32  Score=33.98  Aligned_cols=168  Identities=11%  Similarity=-0.043  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      ...+++.++..++..+|....+++.-+.++.... ...+.++.+.++..+.   |.++.++.....++......     .
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~-----~  265 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPEL-----G  265 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGG-----C
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC-----C
Confidence            5688999999999999999999888888886542 2357899999999988   99999999988874321111     1


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC--hhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCC
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQD  267 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~  267 (423)
                      .+.+.+..+.++++..  +..|+..-+.+...-.  ..+..+.+.++.+.+   +.+..++.....+...-...      
T Consensus       266 d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~------  334 (452)
T 3e4b_A          266 DVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLG------  334 (452)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTS------
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCC------
Confidence            2688899999998665  7888888888776421  135788899999988   88888988888766541100      


Q ss_pred             CCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          268 NNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       268 ~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                                ..-+++.+.+..++.+  +++..+.+....+.
T Consensus       335 ----------~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          335 ----------KVYPQKALDHLLTAAR--NGQNSADFAIAQLF  364 (452)
T ss_dssp             ----------SCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred             ----------CcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence                      0126778888888876  67778877766554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=81.43  E-value=35  Score=36.32  Aligned_cols=131  Identities=8%  Similarity=-0.044  Sum_probs=92.1

Q ss_pred             HHHH-HHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHh-----------CCC-----------chhH
Q 014516          113 IEVM-IHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSY-----------SPK-----------SEQA  169 (423)
Q Consensus       113 ~~~L-~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~-----------nPK-----------~y~~  169 (423)
                      +++. +.+..++..+|.....|-.--.+....+   ..++.-.+++.++..           .|.           +..+
T Consensus       360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~---~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT---KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            4565 7888999999999999988887777765   577788888888764           353           3457


Q ss_pred             hHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHh-cCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516          170 WSHRRWVINMISRNCSTLQWIIERESELVEKIAER-SKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCF  248 (423)
Q Consensus       170 W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~-~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW  248 (423)
                      |..-.-+..+.+.        ++..-.+..+|++. .+..++.|-.-..+-.+.+. ..+......++.++..|.+-.-|
T Consensus       437 Wi~y~~~erR~~~--------l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w  507 (679)
T 4e6h_A          437 YCVYMNTMKRIQG--------LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYI  507 (679)
T ss_dssp             HHHHHHHHHHHHC--------HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCchHHH
Confidence            8776655555443        56777788888887 55557777655444433322 35677788889999999998888


Q ss_pred             -HHHHHHH
Q 014516          249 -HYRRRLM  255 (423)
Q Consensus       249 -~yR~~Ll  255 (423)
                       .|-.++.
T Consensus       508 ~~y~~fe~  515 (679)
T 4e6h_A          508 NKYLDFLI  515 (679)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             5555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=80.75  E-value=19  Score=30.97  Aligned_cols=97  Identities=11%  Similarity=-0.047  Sum_probs=74.0

Q ss_pred             HHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhc-C-CCchhchHHHHHHHhcChhhHHHHHHHHH
Q 014516          158 LVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS-K-MNYRAWNHRCWLVSFMTREQVLDELKKSR  235 (423)
Q Consensus       158 ~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~-p-kNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (423)
                      ..+..+|.+.++...=.|+|-+...     ....++-+.+++.+++.+ | ++--+++|.....-+++  ++.+.+.+++
T Consensus        23 ~e~~~~~~~~~~~F~ya~~Lv~S~~-----~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~   95 (152)
T 1pc2_A           23 SEKAAGSVSKSTQFEYAWCLVRSKY-----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVR   95 (152)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHTCSS-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHH
T ss_pred             HHHccCCCcHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHH
Confidence            3345677777777777888876443     234788899999999999 7 66777777766654444  5899999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhhc
Q 014516          236 NWSGLHVADNSCFHYRRRLMLRNLEG  261 (423)
Q Consensus       236 k~i~~d~~N~SaW~yR~~Ll~~l~~~  261 (423)
                      ++++.+|.|.-|-+=+..+-.++.+.
T Consensus        96 ~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999998888777766443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=80.29  E-value=13  Score=31.91  Aligned_cols=93  Identities=6%  Similarity=-0.093  Sum_probs=56.3

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhC-C-CchhHhHHHHHHHHHhhhccChhHHhHHHHHHH
Q 014516          120 KALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYS-P-KSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (423)
Q Consensus       120 ~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~n-P-K~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (423)
                      ...+..+|....+...=..+|-........++.+.+++.++..+ | ..-..++|..-..-++..        +.+.+.+
T Consensus        22 ~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--------Y~~A~~y   93 (152)
T 1pc2_A           22 QSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--------YEKALKY   93 (152)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--------HHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--------HHHHHHH
Confidence            33344445444444444444444322235678888888888887 6 334555554444333333        7888899


Q ss_pred             HHHHHHhcCCCchhchHHHHHHH
Q 014516          198 VEKIAERSKMNYRAWNHRCWLVS  220 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~  220 (423)
                      ++++++.+|.|-.|-+-+.-+-.
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHH
Confidence            99999999988777766554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=80.12  E-value=36  Score=32.66  Aligned_cols=157  Identities=6%  Similarity=-0.099  Sum_probs=103.2

Q ss_pred             chHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCC-----chhHhH-HHHHHHHHhhh
Q 014516          111 LAIEVMIHSKALLLLSC--DFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPK-----SEQAWS-HRRWVINMISR  182 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nP--e~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK-----~y~~W~-hRrwll~~l~~  182 (423)
                      ..+++++++...|..+|  .+..+.-..-+++...+   ..+.+.+.+..+...+|+     ...+-+ --.|+-...+.
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN---NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            45889999999988887  88888888888888876   788999999999999983     333222 23454443332


Q ss_pred             ccChhHHhHHHHHHHHHHHHHhcCC---CchhchHHHHHHHhcChhhHHHHHHHHHHHHhc----------cCCChhHHH
Q 014516          183 NCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL----------HVADNSCFH  249 (423)
Q Consensus       183 ~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~----------d~~N~SaW~  249 (423)
                      .      -+.+.+.+.+.+++..|.   ....|+    +..+++.  +++.-+.++.+++.          +|.|-.+-.
T Consensus       192 ~------~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~--~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          192 E------TATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRN--IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             S------TTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTC--HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             c------cHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCC--HHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            1      257788999999999986   222233    2233333  66666667777776          477777755


Q ss_pred             HHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          250 YRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       250 yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                      ....+-..+ +.                     +.-+++.++...+|+|.-+=-|
T Consensus       260 N~i~l~~~l-gk---------------------~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          260 NQITLALMQ-GL---------------------DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHHHHHHT-TC---------------------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHh-Ch---------------------HHHHHHHHHHHhCCCChHHHHH
Confidence            554333222 10                     2346778888889998655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	423
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-11

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 20/230 (8%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIV-------SNKRLLPILMDELHLSALVLSYSPKS 166
            V+  +  +L  + DFAT WN R+ ++       S +    ++  EL      L  +PKS
Sbjct: 47  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

Query: 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226
              W HR W+++ +            RE EL  +  E  + N+  W++R ++ +      
Sbjct: 107 YGTWHHRCWLLSRLPEPN------WARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 160

Query: 227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELD 286
             +EL  + +    + ++ S +HYR  L+             +S         +  +EL+
Sbjct: 161 -AEELAFTDSLITRNFSNYSSWHYRSCLL------PQLHPQPDSGPQGRLPENVLLKELE 213

Query: 287 WNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDID 336
             ++        ++ W + R+L           L                
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	100.0
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.01
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.99
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.99
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.49
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.41
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.17
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.97
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.96
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.87
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.81
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.67
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.55
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.43
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.06
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.26
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.01
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.35
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.4
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	89.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	82.49
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	81.47

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-34  Score=278.57  Aligned_cols=269  Identities=17%  Similarity=0.278  Sum_probs=209.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           77 ILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        77 ~l~~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      .+.+-|..|...+...+.             .++.++++|++++++|.+||+|++||++|+.++..++  .++++|+.++
T Consensus        37 ~~~p~~~~a~~~~~~~~~-------------~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~--~~~~eal~~~  101 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQ-------------RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYI  101 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHH-------------hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhC--cCHHHHHHHH
Confidence            446889999888877665             3567899999999999999999999999999999875  5689999999


Q ss_pred             HHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHH
Q 014516          157 ALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRN  236 (423)
Q Consensus       157 ~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k  236 (423)
                      ..++..+||++++|+||++++..++.        +++++.++.++++.+|+|+++|+||+|++..++.  ++++++.+++
T Consensus       102 ~~al~~~p~~~~a~~~~~~~~~~l~~--------~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~--~~~Al~~~~~  171 (315)
T d2h6fa1         102 TAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVDQ  171 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHhHHHHhhcc--------HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            99999999999999999999999877        5789999999999999999999999999999876  7899999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q 014516          237 WSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYLIKHM  316 (423)
Q Consensus       237 ~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~  316 (423)
                      +|+.||+|++||++|++++.++...              .....+++++++..++|..+|+|+++|+|+++++..     
T Consensus       172 al~~~p~n~~a~~~r~~~l~~~~~~--------------~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-----  232 (315)
T d2h6fa1         172 LLKEDVRNNSVWNQRYFVISNTTGY--------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-----  232 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCS--------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-----
T ss_pred             HHHHCCccHHHHHHHHHHHHHcccc--------------chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-----
Confidence            9999999999999999999886321              113468899999999999999999999999887632     


Q ss_pred             hhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhcccc--chh-hhhhhhc
Q 014516          317 ATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQ--GID-IQEKLRA  393 (423)
Q Consensus       317 ~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~--~~~-~~~~~~~  393 (423)
                          .+.                  .+..+.++.++...|+...        ..+..++.+.+.+..  ..+ .+.... 
T Consensus       233 ----~~~------------------~~~~~~~~~~~~l~~~~~~--------~~~~~~l~~~y~~~~~~~~~~~~~~~~-  281 (315)
T d2h6fa1         233 ----RGL------------------SKYPNLLNQLLDLQPSHSS--------PYLIAFLVDIYEDMLENQCDNKEDILN-  281 (315)
T ss_dssp             ----TCG------------------GGCHHHHHHHHHHTTTCCC--------HHHHHHHHHHHHHHHHTTCSSHHHHHH-
T ss_pred             ----cCh------------------HHHHHHHHHHHHhCCCcCC--------HHHHHHHHHHHHHHHhcCHHHHHHHHH-
Confidence                001                  0111223344444555421        112233333322210  000 122122 


Q ss_pred             chhhHHHHh-hhcCcCccchhhhhhccC
Q 014516          394 GVGDVTRML-KRSCPDRSSLWDYLVGYH  420 (423)
Q Consensus       394 ~~~~~~~~l-~~~~p~r~~~w~~~~~~~  420 (423)
                      .+.++.+.| +++||+|++||.|+.+.|
T Consensus       282 ka~~l~~~l~~~~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         282 KALELCEILAKEKDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            466777777 599999999999998755

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.2e-22  Score=194.84  Aligned_cols=285  Identities=18%  Similarity=0.215  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCC-------cCCHHHH
Q 014516           80 PVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRL-------LPILMDE  152 (423)
Q Consensus        80 ~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~-------~~~~~~E  152 (423)
                      ..|..+...+.....             .++.++++++.+.++|.+||+++++||+|+.++..+..       ...+.++
T Consensus        26 ~~~~~~~~~~~~~~~-------------~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~a   92 (334)
T d1dcea1          26 KLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAE   92 (334)
T ss_dssp             HHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-------------cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            457676665555433             34677999999999999999999999999999887641       1237899


Q ss_pred             HHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHH
Q 014516          153 LHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELK  232 (423)
Q Consensus       153 L~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~  232 (423)
                      |.+++.++..+||++.+|.||+|++..+....      +.+++..+.++++.+|+|+++|.++.|....... .++.+++
T Consensus        93 l~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al~  165 (334)
T d1dcea1          93 LGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN------WARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELA  165 (334)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc------HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHHH
Confidence            99999999999999999999999999876532      6899999999999999999999998887765433 3789999


Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 014516          233 KSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMYL  312 (423)
Q Consensus       233 ~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l  312 (423)
                      ++++++..||+|+++|++|+.++..+....   .+.   ........+....+++...++..+|.|+++|.|.+.+... 
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~---~A~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQP---DSG---PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCC---CSS---SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCHH---HHH---HHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence            999999999999999999999999874321   100   0012234566777888899999999999999999887531 


Q ss_pred             HHHHhhhhhhcccCCCCCCcchh-hHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhhhhccccchhhhhhh
Q 014516          313 IKHMATHLLAVSCQSKPKASVDI-DIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTKQIPEYQGIDIQEKL  391 (423)
Q Consensus       313 ~~~~~~~~~~~s~~~~~~~~~~~-~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~~~~~~~~~~~~~~~  391 (423)
                             ......   ....... ....-..+-++.+..++..+|++       ..++.++-+.....    | +.+   
T Consensus       239 -------~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~----~-~~~---  293 (334)
T d1dcea1         239 -------AEPLFR---CELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPL----L-YEK---  293 (334)
T ss_dssp             -------CCCSSS---CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHCTG----G-GHH---
T ss_pred             -------cchhhH---HHHHHHHHHHHhhHHHHHHHHHHHHhhCchH-------HHHHHHHHHHHHHC----C-CHH---
Confidence                   000000   0001110 00111223355556666667765       33555554444332    2 112   


Q ss_pred             hcchhhHHHHhhhcCcCccchhhhhhc
Q 014516          392 RAGVGDVTRMLKRSCPDRSSLWDYLVG  418 (423)
Q Consensus       392 ~~~~~~~~~~l~~~~p~r~~~w~~~~~  418 (423)
                        ++.+...-+-..||.|.+||.++..
T Consensus       294 --eA~~~~~~ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         294 --ETLQYFSTLKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             --HHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCcccHHHHHHHHH
Confidence              4566666666889999999998753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.7e-23  Score=199.29  Aligned_cols=197  Identities=15%  Similarity=0.328  Sum_probs=172.9

Q ss_pred             HHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHH
Q 014516          123 LLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA  202 (423)
Q Consensus       123 Ll~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l  202 (423)
                      |..+|++..|+++.+.++...+   ..+++|.+++.++..||+++++|++|+-++..++..       +++|+.++.+++
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e---~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~-------~~eal~~~~~al  105 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD-------LHEEMNYITAII  105 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------HHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcC-------HHHHHHHHHHHH
Confidence            4568999999999999998875   679999999999999999999999999999988652       789999999999


Q ss_pred             HhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHH
Q 014516          203 ERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWK  282 (423)
Q Consensus       203 ~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~  282 (423)
                      +.+|+|+.+|.||++++..++.  ++++++++.++++.||+|+++|.+|++++..+.                    .++
T Consensus       106 ~~~p~~~~a~~~~~~~~~~l~~--~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~--------------------~~~  163 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------------------LWD  163 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------------------CCT
T ss_pred             HHHHhhhhHHHHHhHHHHhhcc--HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH--------------------hhH
Confidence            9999999999999999999876  789999999999999999999999999998863                    256


Q ss_pred             HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhh
Q 014516          283 EELDWNESLIKQYVGREALWLHRRFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEE  362 (423)
Q Consensus       283 eEL~~~~~~I~~~p~neSaW~yrr~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~  362 (423)
                      ++++++.++|..+|+|.++|++|..++..+.        ..            .....+.++++....++..+|++    
T Consensus       164 ~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~--------~~------------~~~~~~~~ai~~~~~al~~~P~~----  219 (315)
T d2h6fa1         164 NELQYVDQLLKEDVRNNSVWNQRYFVISNTT--------GY------------NDRAVLEREVQYTLEMIKLVPHN----  219 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CS------------CSHHHHHHHHHHHHHHHHHSTTC----
T ss_pred             HHHHHHHHHHHHCCccHHHHHHHHHHHHHcc--------cc------------chhhhhHHhHHHHHHHHHhCCCc----
Confidence            7899999999999999999999988875411        01            02345778999999999999999    


Q ss_pred             HHHHHHHHHHHHHhhh
Q 014516          363 AQAIHSAAYMLWLTKQ  378 (423)
Q Consensus       363 ~q~~~~~~y~~Wl~~~  378 (423)
                         ..+|.|+.++...
T Consensus       220 ---~~~~~~l~~ll~~  232 (315)
T d2h6fa1         220 ---ESAWNYLKGILQD  232 (315)
T ss_dssp             ---HHHHHHHHHHHTT
T ss_pred             ---hHHHHHHHHHHHh
Confidence               5699999998754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.3e-15  Score=146.56  Aligned_cols=192  Identities=23%  Similarity=0.338  Sum_probs=154.9

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh--hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChh
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST--LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~--~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (423)
                      ..++++..++.+|..||+++++|++|+.++..+......  ....+.+++.++.++++.+|+|+.+|.||+|++..++..
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            347899999999999999999999999999988765432  123478999999999999999999999999999998876


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHR  305 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yr  305 (423)
                      .+.+++..+.+.+..||++.++|.++.+.+....+                   .+++++++...+|..+|+|.++|+++
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~Al~~~~~~i~~~p~~~~a~~~l  184 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYR  184 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-------------------ccHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            78999999999999999999999998877665422                   36789999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHhhhccCccchhhhHHHHHHHHHHHHHhh
Q 014516          306 RFLSMYLIKHMATHLLAVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIADANFEEAQAIHSAAYMLWLTK  377 (423)
Q Consensus       306 r~Ll~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~El~lv~~~~~~dp~D~~~~~q~~~~~~y~~Wl~~  377 (423)
                      +.++..+.+        ...    ...............++.+..+..++|.|     ++  .|.|...+..
T Consensus       185 ~~~~~~~~~--------~~~----A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~a--~~~~~~~l~~  237 (334)
T d1dcea1         185 SCLLPQLHP--------QPD----SGPQGRLPENVLLKELELVQNAFFTDPND-----QS--AWFYHRWLLG  237 (334)
T ss_dssp             HHHHHHHSC--------CCC----SSSCCSSCHHHHHHHHHHHHHHHHHCSSC-----SH--HHHHHHHHHS
T ss_pred             HHHHHHhcC--------HHH----HHHHHHHhHHhHHHHHHHHHHHHHhcchh-----HH--HHHHHHHHHh
Confidence            888754211        100    00112223455667788888899999988     44  7888888764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=9e-09  Score=96.35  Aligned_cols=169  Identities=7%  Similarity=-0.008  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------------------------------CcCCHHHHHHHHHHHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------------------------------LLPILMDELHLSALVL  160 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------------------------------~~~~~~~EL~~~~~lL  160 (423)
                      .++++.....++.++|++..+|.....++...+                               ....+++++..+..++
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  264 (388)
T d1w3ba_         185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            355555666666666666666665555554432                               0124555555555555


Q ss_pred             HhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhc
Q 014516          161 SYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGL  240 (423)
Q Consensus       161 ~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~  240 (423)
                      ..+|+++.+|.....++...+.        +.+.+.....+...+|.+..+|..+..+....+.  +++.+...++.++.
T Consensus       265 ~~~p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~  334 (388)
T d1w3ba_         265 ELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANIKREQGN--IEEAVRLYRKALEV  334 (388)
T ss_dssp             HTCSSCHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHTTS
T ss_pred             HhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC--HHHHHHHHHHHHHh
Confidence            5555555555555555554433        4455566666666666666666666665554433  66677777777777


Q ss_pred             cCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 014516          241 HVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSM  310 (423)
Q Consensus       241 d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (423)
                      +|.+..+|..+..++....                    -+++.+++..++|+.+|++..+|..+..++.
T Consensus       335 ~p~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQG--------------------KLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTT--------------------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7777777777666655431                    2466778888888888888888887766553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3e-08  Score=92.64  Aligned_cols=175  Identities=10%  Similarity=-0.016  Sum_probs=112.9

Q ss_pred             cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh---
Q 014516          110 TLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST---  186 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~---  186 (423)
                      .............+..+|++..++..+..+....+   ...+++..+..++..+|++..+|.....++...+.....   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  225 (388)
T d1w3ba_         149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             chhhhhHHHHHHhhccCcchhHHHHhhcccccccC---cHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHH
Confidence            34577888889999999999999999999888775   789999999999999999999999988877655442100   


Q ss_pred             -----------------------hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCC
Q 014516          187 -----------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       187 -----------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~  243 (423)
                                             -...+++.+.++.++++.+|.+..+|...+.++...+.  +.+.++...+.+..+|.
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~  303 (388)
T d1w3ba_         226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhhhccCCc
Confidence                                   00113344445555555555555555555544444332  44445555555555555


Q ss_pred             ChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 014516          244 DNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLS  309 (423)
Q Consensus       244 N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll  309 (423)
                      +..+|..+..+....                    ..+++.+++..++++.+|++..+|..+..++
T Consensus       304 ~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         304 HADSLNNLANIKREQ--------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             CHHHHHHHHHHHHTT--------------------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            555554444443322                    1256667777777777777776666654443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.2e-08  Score=91.52  Aligned_cols=175  Identities=7%  Similarity=-0.071  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccC------
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCS------  185 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~------  185 (423)
                      .++++..++.+|..||++..+|..++.+....+   .+++++..+..++..+|++..+|.....++..++....      
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            477777788888888888888888877777765   67777888888888888888877777766655432110      


Q ss_pred             -----------------------------------hhHHhHHHHHHHHHHHHHhcCCCchh--chHHHHHHHhcChhhHH
Q 014516          186 -----------------------------------TLQWIIERESELVEKIAERSKMNYRA--WNHRCWLVSFMTREQVL  228 (423)
Q Consensus       186 -----------------------------------~~~~~~~~EL~~~~~~l~~~pkNY~A--W~hR~wll~~~~~~~~~  228 (423)
                                                         .....+.+.+..+.++++.+|.+..+  |...+.+....+.  ++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~--~~  189 (323)
T d1fcha_         112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YD  189 (323)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HH
T ss_pred             hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH--Hh
Confidence                                               00123455667788899999987655  4445666655544  78


Q ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 014516          229 DELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFL  308 (423)
Q Consensus       229 ~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~L  308 (423)
                      +.+..+++.+..+|.+..+|..++.++....                    .+++.+++..++|..+|++..+|+.+..+
T Consensus       190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~  249 (323)
T d1fcha_         190 KAVDCFTAALSVRPNDYLLWNKLGATLANGN--------------------QSEEAVAAYRRALELQPGYIRSRYNLGIS  249 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhcccccccccccccccchhhhhhcccccc--------------------cchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            8999999999999999999999998877642                    26788999999999999999999987766


Q ss_pred             HHH
Q 014516          309 SMY  311 (423)
Q Consensus       309 l~~  311 (423)
                      +..
T Consensus       250 ~~~  252 (323)
T d1fcha_         250 CIN  252 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.1e-07  Score=88.47  Aligned_cols=191  Identities=10%  Similarity=0.003  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHH
Q 014516           81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLS  156 (423)
Q Consensus        81 lY~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~  156 (423)
                      -|..|...|.++++.......    ...--......++++.....++.++|++..+|.....++...+   .+.+++..+
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~  110 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEIL  110 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc---cccccccch
Confidence            488899999888874321100    0000001234688999999999999999999999998887764   455566666


Q ss_pred             HHHHHhCCCchhHh---------------------------------------------------HHHHHHHHHhhhccC
Q 014516          157 ALVLSYSPKSEQAW---------------------------------------------------SHRRWVINMISRNCS  185 (423)
Q Consensus       157 ~~lL~~nPK~y~~W---------------------------------------------------~hRrwll~~l~~~~~  185 (423)
                      ..++..+|+...++                                                   .....+....+    
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~----  186 (323)
T d1fcha_         111 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG----  186 (323)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT----
T ss_pred             hhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH----
Confidence            66655555544433                                                   22222222222    


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhccccc
Q 014516          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYT  265 (423)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~  265 (423)
                          -+++.+..+.+++..+|.+..+|..++.++...+.  +.+.++.+.+.++.+|.+..+|..++.+..++.      
T Consensus       187 ----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g------  254 (323)
T d1fcha_         187 ----EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ--SEEAVAAYRRALELQPGYIRSRYNLGISCINLG------  254 (323)
T ss_dssp             ----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------
T ss_pred             ----HHhhhhcccccccccccccccchhhhhhccccccc--chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCC------
Confidence                26788999999999999999999999999988765  889999999999999999999999999888752      


Q ss_pred             CCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHH
Q 014516          266 QDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLH  304 (423)
Q Consensus       266 ~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~y  304 (423)
                                    -+++.+++..++|..+|.+..++..
T Consensus       255 --------------~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         255 --------------AHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHTC------
T ss_pred             --------------CHHHHHHHHHHHHHhCCcChhhhhh
Confidence                          2678899999999999998876654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=5.1e-08  Score=87.96  Aligned_cols=102  Identities=10%  Similarity=-0.040  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+.++|.++|++..+|+.++.+....+   .+++++..+..++..+|++..+|..+..++..++.        
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------  120 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--------  120 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH---HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh--------
Confidence            3588999999999999999999999999999886   79999999999999999999999999999988766        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHHhcC
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (423)
                      +...+..+.++++.+|.+..+..+.......+.
T Consensus       121 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            678899999999999998887776665554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.2e-07  Score=72.60  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHH
Q 014516          136 RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR  215 (423)
Q Consensus       136 Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR  215 (423)
                      ++......+   .+++++.+++.+|..+|.++.+|..+..++..++.        +...+..+.++++.+|.|..+|..+
T Consensus         9 ~g~~~~~~g---~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           9 KGNKALSVG---NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcC---CHHHHHHHHHHHHhcCCcchhhhhccccccccccc--------ccccchhhhhHHHhccchhhHHHHH
Confidence            444444443   78899999999999999999999999998888766        6788899999999999999999988


Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          216 CWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       216 ~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                      +-+...++.  +++.+..+.+.++.+|+|..++..+.-+
T Consensus        78 g~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          78 AAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            888888765  7888999999999999998888776543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-06  Score=70.32  Aligned_cols=95  Identities=9%  Similarity=0.049  Sum_probs=88.1

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..+|.++|++..+|+.++.+....+   .+++++..+..++..+|.+..+|..+.-++..++.        
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--------   86 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--------   86 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccc---cccccchhhhhHHHhccchhhHHHHHHHHHHHccC--------
Confidence            4589999999999999999999999999999886   89999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRC  216 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~  216 (423)
                      +++.+.++.++++.+|.|-.+|....
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            78999999999999999988887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.7e-06  Score=73.33  Aligned_cols=99  Identities=9%  Similarity=-0.068  Sum_probs=88.5

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..+|.+||++..+|+.++.++..++   .+++++..+..+|..+|++..+|..+..++..++.        
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~--------   93 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK--------   93 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc---ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC--------
Confidence            3588999999999999999999999999999886   78999999999999999999999999999888876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHHHHHHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHRCWLVS  220 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (423)
                      +.+.+..+.+++..+|.|..++.+...+..
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            788999999999999999988877655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=8.6e-06  Score=72.75  Aligned_cols=131  Identities=8%  Similarity=-0.043  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHH----hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhH
Q 014516          113 IEVMIHSKALLL----LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       113 ~~~L~~t~~lLl----~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~  188 (423)
                      +.+|.....+|.    .+|+...++..|+.+....+   .+++++..+..+|..+|+++.+|+.+..+...++.      
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g---~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~------   86 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN------   86 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH------
Confidence            344444455543    24456678889999999886   79999999999999999999999999999988876      


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLML  256 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~  256 (423)
                        +++.+..+.++++.+|.+..+|..++.++..++.  +...++.+++.++.+|.+..+..+......
T Consensus        87 --~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  150 (259)
T d1xnfa_          87 --FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ  150 (259)
T ss_dssp             --HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh--HHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence              7899999999999999999999999999988765  788999999999999999877666554433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.9e-06  Score=70.91  Aligned_cols=107  Identities=7%  Similarity=-0.013  Sum_probs=94.8

Q ss_pred             HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHH
Q 014516          136 RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR  215 (423)
Q Consensus       136 Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR  215 (423)
                      ++......+   .+++++..+..++..+|.+..+|..+..++..++.        +.+.+.++.++++.+|.+..||..+
T Consensus        16 ~gn~~~~~~---~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_          16 QANDYFKAK---DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcC---CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--------cchHHHHHHHHHHHcccchHHHHHH
Confidence            444444443   79999999999999999999999999999998876        7899999999999999999999999


Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 014516          216 CWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLM  255 (423)
Q Consensus       216 ~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll  255 (423)
                      +.+...++.  +.+.+..+.+.+..+|.|..++.....+.
T Consensus        85 g~~~~~~g~--~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          85 AASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999988876  88999999999999999999887766553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.8e-06  Score=74.51  Aligned_cols=94  Identities=10%  Similarity=-0.066  Sum_probs=86.1

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++|+..+..+|.++|++..+|+.|+.+...++   .+++++..+..++..+|++..+|.++.-++..++.        
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~---~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~--------   87 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES--------   87 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh---hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------
Confidence            4689999999999999999999999999999986   89999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCCchhchHH
Q 014516          191 IERESELVEKIAERSKMNYRAWNHR  215 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR  215 (423)
                      +++.+....++++.+|.+-..|...
T Consensus        88 ~~~A~~~~~~al~l~p~~~~~~~~~  112 (201)
T d2c2la1          88 YDEAIANLQRAYSLAKEQRLNFGDD  112 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHH
Confidence            7899999999999999877666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2.3e-06  Score=73.83  Aligned_cols=100  Identities=9%  Similarity=-0.039  Sum_probs=87.4

Q ss_pred             HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHH
Q 014516          136 RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR  215 (423)
Q Consensus       136 Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR  215 (423)
                      .+..+...+   .+++++.++..+|..+|+++.+|+.+.-++.+++.        ++..+..+.++++.+|.|..+|.++
T Consensus        10 ~Gn~~~~~g---~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--------~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1          10 QGNRLFVGR---KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--------hhhhhHHHHHHHHhCCCcHHHHHHH
Confidence            344454444   79999999999999999999999999999998876        7999999999999999999999999


Q ss_pred             HHHHHhcChhhHHHHHHHHHHHHhccCCChhHH
Q 014516          216 CWLVSFMTREQVLDELKKSRNWSGLHVADNSCF  248 (423)
Q Consensus       216 ~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW  248 (423)
                      +-+...++.  +++.+....+.+.++|.+...|
T Consensus        79 g~~~~~l~~--~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          79 GQCQLEMES--YDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHCCC--HHHHHHHHHHHHHhCcccHHHH
Confidence            999988876  8899999999999887655443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.03  E-value=2.5e-05  Score=62.27  Aligned_cols=92  Identities=11%  Similarity=0.003  Sum_probs=75.4

Q ss_pred             HHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhch
Q 014516          134 NSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWN  213 (423)
Q Consensus       134 n~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~  213 (423)
                      ..++.++...+   .+.+++.+++.++..+|+++.+|.++..+..+++.        +.+.+....++++.+|.+..+|.
T Consensus        20 ~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          20 MEEGLSMLKLA---NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHh---hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh--------HHHhhcccccccccccccccchH
Confidence            44556666654   78899999999999999999999999988887765        67888899999999999999998


Q ss_pred             HHHHHHHhcChhhHHHHHHHHHHHH
Q 014516          214 HRCWLVSFMTREQVLDELKKSRNWS  238 (423)
Q Consensus       214 hR~wll~~~~~~~~~~EL~~~~k~i  238 (423)
                      ..+.+....+.  +.+.++..+++|
T Consensus        89 ~la~~y~~~g~--~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHN--ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHh
Confidence            88888877654  778888888876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=1.4e-05  Score=67.12  Aligned_cols=101  Identities=6%  Similarity=-0.058  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccC-------CcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhcc
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKR-------LLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNC  184 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~-------~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~  184 (423)
                      .++++..++.++.++|++..+++.++.++..++       ....+++++..+..++..+|+++.+|+.+..++..++...
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            478889999999999999999999999886542       0234688999999999999999999999999988776533


Q ss_pred             Ch---hHHhHHHHHHHHHHHHHhcCCCchhc
Q 014516          185 ST---LQWIIERESELVEKIAERSKMNYRAW  212 (423)
Q Consensus       185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (423)
                      ..   ....+...+.+..++++.+|.|-.++
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~  123 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYL  123 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHH
Confidence            21   12346677777777777777765544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00015  Score=63.15  Aligned_cols=123  Identities=3%  Similarity=-0.116  Sum_probs=100.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..+++++.+..   +.|.+..+|+.++.+...++   .+++++..++.++..+|+++.+|+.|..+..+++.        
T Consensus        20 d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~--------   85 (192)
T d1hh8a_          20 DWKGALDAFSA---VQDPHSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------   85 (192)
T ss_dssp             CHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc--------
Confidence            34677877775   46778899999999999886   89999999999999999999999999999998877        


Q ss_pred             HHHHHHHHHHHHHhcCCCch----------------hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHH
Q 014516          191 IERESELVEKIAERSKMNYR----------------AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFH  249 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~----------------AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~  249 (423)
                      +++.+..+++++...+.|..                ++..++.+...++.  +++.++.+.+.+..+|..-+..-
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--~~~A~~~l~~A~~~~~~~~~~~~  158 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHSKI  158 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGGHH
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcchHHH
Confidence            68889999999988777643                34455666666554  78888999999998887655443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=5.3e-05  Score=63.34  Aligned_cols=107  Identities=7%  Similarity=-0.128  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccCh--hHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcCh-
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCST--LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-  224 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~--~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-  224 (423)
                      .+++++...+.++..+|+++.+|+....++..+......  ....+++.+..++++++.+|++..+|..++.++..++. 
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            478899999999999999999999999999877654321  23457899999999999999999999999999876542 


Q ss_pred             --------hhHHHHHHHHHHHHhccCCChhHHHHHHHH
Q 014516          225 --------EQVLDELKKSRNWSGLHVADNSCFHYRRRL  254 (423)
Q Consensus       225 --------~~~~~EL~~~~k~i~~d~~N~SaW~yR~~L  254 (423)
                              ..+...+++..+.+..+|.|-.++......
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence                    246788999999999999998776655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.96  E-value=9.2e-05  Score=62.10  Aligned_cols=101  Identities=8%  Similarity=-0.052  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHHhCCCch----------------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          148 ILMDELHLSALVLSYSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y----------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                      .+.+++.....+|...|...                .+++-+..++.+++.        +.+.+..+.++++.+|.|.-|
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc--------cchhhhhhhccccccchhhhh
Confidence            56666666666665444332                345556666666654        789999999999999999999


Q ss_pred             chHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          212 WNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       212 W~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      |..++.+...++.  +...+..+.+.+..+|+|-.++.....+..++
T Consensus       104 ~~~~g~~~~~lg~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         104 LYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999876  89999999999999999999998888777665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.95  E-value=2e-05  Score=67.15  Aligned_cols=90  Identities=8%  Similarity=-0.131  Sum_probs=77.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHH
Q 014516          121 ALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (423)
Q Consensus       121 ~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (423)
                      ....++|....+++.|..+...++   .+++++..++.+|..+|++..+|..|..++..++.        ++..+....+
T Consensus        68 ~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~--------~~~A~~~~~~  136 (169)
T d1ihga1          68 DGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--------YDQALADLKK  136 (169)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             HHHHhChhhHHHHHHHHHHHHhhc---ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC--------HHHHHHHHHH
Confidence            334568888999999999988886   89999999999999999999999999999998876        7899999999


Q ss_pred             HHHhcCCCchhchHHHHHHHh
Q 014516          201 IAERSKMNYRAWNHRCWLVSF  221 (423)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~  221 (423)
                      +++.+|.|-.+......+...
T Consensus       137 al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1         137 AQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHH
Confidence            999999998877776665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00022  Score=62.11  Aligned_cols=136  Identities=10%  Similarity=0.043  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                      ...|| ++......+   +++.++..+..+   .|.++.+|+.++-+...++.        ++..+..+.++++.||.+.
T Consensus         6 ~~l~~-~g~~~~~~~---d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~--------~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_           6 ISLWN-EGVLAADKK---DWKGALDAFSAV---QDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             HHHHH-HHHHHHHTT---CHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHH-HHHHHHHCC---CHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHhhhhh
Confidence            45676 466665554   789999888764   66778899999999888776        7899999999999999999


Q ss_pred             hhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh----------------HHHHHHHHHHHhhhcccccCCCCCCCc
Q 014516          210 RAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS----------------CFHYRRRLMLRNLEGFCYTQDNNSSGY  273 (423)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S----------------aW~yR~~Ll~~l~~~~~~~~~~~~~~~  273 (423)
                      .+|..|+.+...++.  +++.+..+++.+...+.|.+                .+..+..+...+               
T Consensus        71 ~a~~~~g~~~~~~g~--~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~---------------  133 (192)
T d1hh8a_          71 VAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK---------------  133 (192)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT---------------
T ss_pred             hhHHHHHHHHHhhcc--HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC---------------
Confidence            999999999998876  88999999999987766542                233334333332               


Q ss_pred             hhchHHHHHHHHHHHHHHHhhcCCCccHH
Q 014516          274 FVETYQIWKEELDWNESLIKQYVGREALW  302 (423)
Q Consensus       274 ~~~~~~~~~eEL~~~~~~I~~~p~neSaW  302 (423)
                           .-+++.++....++...|...-..
T Consensus       134 -----~~~~~A~~~l~~A~~~~~~~~~~~  157 (192)
T d1hh8a_         134 -----EEWKKAEEQLALATSMKSEPRHSK  157 (192)
T ss_dssp             -----TCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred             -----CCHHHHHHHHHHHHhcCCCcchHH
Confidence                 136677788888888888754333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.83  E-value=9.4e-05  Score=58.74  Aligned_cols=80  Identities=10%  Similarity=-0.058  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ..+++...++++.++|++..+|+.++.+....+   .+.+++.....++..+|.+..+|..+..+....+.        +
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~--------~  100 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  100 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhh---hHHHhhcccccccccccccccchHHHHHHHHHCCC--------H
Confidence            578999999999999999999999999998885   89999999999999999999999999999988876        5


Q ss_pred             HHHHHHHHHHH
Q 014516          192 ERESELVEKIA  202 (423)
Q Consensus       192 ~~EL~~~~~~l  202 (423)
                      .+.++..++.+
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777776654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.1e-05  Score=61.35  Aligned_cols=104  Identities=11%  Similarity=-0.072  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch--hchHHHHHHHhcChh
Q 014516          148 ILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR--AWNHRCWLVSFMTRE  225 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~~  225 (423)
                      +++++-+....+|..+|.+..+.....|++.+...     ...+.+.+.++++++..+|++.+  +|.+.+.+...++. 
T Consensus        14 ~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-   87 (122)
T d1nzna_          14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-
Confidence            57777888889999999999988888888754222     12257788889999998888765  88888888888765 


Q ss_pred             hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          226 QVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       226 ~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                       +++.+.++++.++.+|.|..|...+..+..++
T Consensus        88 -~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          88 -YEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence             88889999999999999999988888776664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.9e-05  Score=61.44  Aligned_cols=103  Identities=10%  Similarity=-0.062  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch--hHhHHHHHHHHHhhhccChhHH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE--QAWSHRRWVINMISRNCSTLQW  189 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y--~~W~hRrwll~~l~~~~~~~~~  189 (423)
                      -+++-+.+..+|.++|++..+.+....+|...+...++++++.++..+|..+|+..  .+|.....+..+++.       
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-------   87 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------   87 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-------
Confidence            46677889999999999999999999998654323356789999999999998774  489999999988876       


Q ss_pred             hHHHHHHHHHHHHHhcCCCchhchHHHHHHHhc
Q 014516          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (423)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (423)
                       +++.+.++.++++.+|.|-.|...+.-|.+++
T Consensus        88 -~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          88 -YEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence             78999999999999999999999988877654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.67  E-value=0.00055  Score=57.11  Aligned_cols=81  Identities=12%  Similarity=-0.015  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (423)
                      ++++.|..+...++   .+.+.+..+..+|..+|.+..+|..+..++..++.        +...+..+.++++.+|.|--
T Consensus        68 ~~~~Nla~~~~~l~---~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          68 SCNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--------LEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHhhHHHHHHHhc---ccchhhhhhhccccccchhhhhhHHhHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH
Confidence            56778888888886   79999999999999999999999999999999887        78999999999999999999


Q ss_pred             hchHHHHHHHhc
Q 014516          211 AWNHRCWLVSFM  222 (423)
Q Consensus       211 AW~hR~wll~~~  222 (423)
                      ++.....+..++
T Consensus       137 ~~~~l~~~~~kl  148 (153)
T d2fbna1         137 IRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988877776554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.64  E-value=0.001  Score=56.07  Aligned_cols=111  Identities=6%  Similarity=-0.052  Sum_probs=84.4

Q ss_pred             HHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch---------------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHH
Q 014516          135 SRKLIVSNKRLLPILMDELHLSALVLSYSPKSE---------------QAWSHRRWVINMISRNCSTLQWIIERESELVE  199 (423)
Q Consensus       135 ~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y---------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~  199 (423)
                      -++..+...+   .+.+++.+...+|...|..+               .++..|.-++.+++.        +.+.+..++
T Consensus        20 e~G~~~~~~~---~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------~~~Ai~~~~   88 (168)
T d1kt1a1          20 EKGTVYFKGG---KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------YTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh--------cccchhhhh
Confidence            3444444443   56666666666665444333               344556666666554        789999999


Q ss_pred             HHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          200 KIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       200 ~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      ++++.+|.|..+|..|+.+...++.  +.+.+..+.+.+..+|.|-.++..+..+...+
T Consensus        89 ~al~l~p~~~~a~~~~~~~~~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          89 KALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998876  89999999999999999999988888776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00063  Score=57.76  Aligned_cols=114  Identities=9%  Similarity=-0.099  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHH---------------HHHHHHHhhhccChhHHhHHHHHH
Q 014516          132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSH---------------RRWVINMISRNCSTLQWIIERESE  196 (423)
Q Consensus       132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~h---------------Rrwll~~l~~~~~~~~~~~~~EL~  196 (423)
                      ..+-++..+...+   .+++++.....+|...|.....+..               +.-+..+++        -+.+.+.
T Consensus        15 ~l~~~G~~~~~~~---~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~--------~~~~A~~   83 (170)
T d1p5qa1          15 IVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAIE   83 (170)
T ss_dssp             HHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh--------hcccccc
Confidence            3344555544443   6777788888777777766555544               333333332        2789999


Q ss_pred             HHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Q 014516          197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .++++++.+|.|..+|..++.+...++.  +.+.+..+.+.++++|.|..+-.....+..++
T Consensus        84 ~~~~al~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          84 SCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccchhhhHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876  89999999999999999998877777665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00032  Score=56.80  Aligned_cols=97  Identities=13%  Similarity=0.001  Sum_probs=75.9

Q ss_pred             HHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHH
Q 014516          136 RKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR  215 (423)
Q Consensus       136 Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR  215 (423)
                      .+......   ..+.+++.+++.+|..+|++..+|..|..++.+++.        +...+..+.++++.+|++..+|...
T Consensus        10 ~G~~~~~~---~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~l~~~~~~~~~~~   78 (128)
T d1elra_          10 LGNDAYKK---KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGRENREDYRQI   78 (128)
T ss_dssp             HHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHc---CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc--------hHHHHHHHHHHHHhCcccHHHHHHH
Confidence            34444444   378999999999999999999999999999998876        7899999999999999999999887


Q ss_pred             HHHHHhcCh-----hhHHHHHHHHHHHHhccCC
Q 014516          216 CWLVSFMTR-----EQVLDELKKSRNWSGLHVA  243 (423)
Q Consensus       216 ~wll~~~~~-----~~~~~EL~~~~k~i~~d~~  243 (423)
                      ..++.+++.     ..+.+.+.+..+.+..++.
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            777766543     2466667777777666543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00076  Score=57.22  Aligned_cols=81  Identities=10%  Similarity=-0.006  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch
Q 014516          131 TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (423)
Q Consensus       131 TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (423)
                      .+++.+..+....+   .+.+.+..++.+|..+|.+..+|..+..++..++.        +...+..+.++++.+|.|-.
T Consensus        63 ~~~~nla~~y~k~~---~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--------FELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHhhh---hcccccchhhhhhhccccchhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHhCCCCHH
Confidence            46777888888775   79999999999999999999999999999999887        78999999999999999987


Q ss_pred             hchHHHHHHHhc
Q 014516          211 AWNHRCWLVSFM  222 (423)
Q Consensus       211 AW~hR~wll~~~  222 (423)
                      +-....-+...+
T Consensus       132 ~~~~l~~~~~~~  143 (170)
T d1p5qa1         132 AKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            776655554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.55  E-value=0.00064  Score=57.45  Aligned_cols=82  Identities=13%  Similarity=0.032  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCc
Q 014516          130 ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (423)
Q Consensus       130 ~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (423)
                      ..+++.|..+...++   .+.+.+..++.+|..+|++..+|..|..++..++.        +.+.+..+.++++.+|.|-
T Consensus        64 ~~~~~Nla~~~~~l~---~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~--------~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLR---EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHhHHHHHHHhh---hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH
Confidence            345667888888875   89999999999999999999999999999998876        7899999999999999999


Q ss_pred             hhchHHHHHHHhc
Q 014516          210 RAWNHRCWLVSFM  222 (423)
Q Consensus       210 ~AW~hR~wll~~~  222 (423)
                      .++..+..+...+
T Consensus       133 ~~~~~l~~~~~~~  145 (168)
T d1kt1a1         133 AARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988887776554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.43  E-value=0.00067  Score=57.18  Aligned_cols=89  Identities=9%  Similarity=-0.076  Sum_probs=77.8

Q ss_pred             HHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHh
Q 014516          160 LSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSG  239 (423)
Q Consensus       160 L~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~  239 (423)
                      ...+|....+|..|..+..+++.        +++.+..+.++++.+|.|..||..++-++..++.  ++..++.+.+.++
T Consensus        70 ~~~~~~~~~~~~nla~~~~~~~~--------~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~--~~~A~~~~~~al~  139 (169)
T d1ihga1          70 AKLQPVALSCVLNIGACKLKMSD--------WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQE  139 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             HHhChhhHHHHHHHHHHHHhhcc--------cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC--HHHHHHHHHHHHH
Confidence            34567778899999988888776        7899999999999999999999999999998876  8999999999999


Q ss_pred             ccCCChhHHHHHHHHHHHh
Q 014516          240 LHVADNSCFHYRRRLMLRN  258 (423)
Q Consensus       240 ~d~~N~SaW~yR~~Ll~~l  258 (423)
                      .+|.|..+......+..++
T Consensus       140 l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHH
Confidence            9999999888877665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00025  Score=57.46  Aligned_cols=92  Identities=8%  Similarity=-0.059  Sum_probs=76.2

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++.+++.+|.++|++..+|..|..+....+   .+++++..+..++..+|++...|.....++..++..... ...
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~~   94 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEK   94 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC---chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hCC
Confidence            3588999999999999999999999999999986   899999999999999999999999888887776643211 123


Q ss_pred             HHHHHHHHHHHHHhcC
Q 014516          191 IERESELVEKIAERSK  206 (423)
Q Consensus       191 ~~~EL~~~~~~l~~~p  206 (423)
                      +.+.+.+..+++..+|
T Consensus        95 ~~~A~~~~~kal~~~~  110 (128)
T d1elra_          95 YKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            6777777777777665

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00071  Score=67.37  Aligned_cols=165  Identities=8%  Similarity=-0.051  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhCCCcHHH-------HHH--HH--HHHHccC------C--------cCCHHHHHHHHHHHH-------Hh
Q 014516          115 VMIHSKALLLLSCDFATA-------WNS--RK--LIVSNKR------L--------LPILMDELHLSALVL-------SY  162 (423)
Q Consensus       115 ~L~~t~~lLl~nPe~~Ta-------Wn~--Rk--~lL~~~~------~--------~~~~~~EL~~~~~lL-------~~  162 (423)
                      .-++++++|..+|++..+       |+.  +.  ..+....      .        ...+.++..+...++       ..
T Consensus        36 l~eaye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l  115 (497)
T d1ya0a1          36 LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV  115 (497)
T ss_dssp             HHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            345689999999998654       542  11  1111100      0        012333444444444       46


Q ss_pred             CCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccC
Q 014516          163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHV  242 (423)
Q Consensus       163 nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~  242 (423)
                      +|++..+|...+.+....+.        ....+....+++..+|  +.++.+.+-+....+.  +.+.+.+..+.+..+|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~--~~~A~~~y~~A~~l~P  183 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTH--------TSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ--TSQAESYYRHAAQLVP  183 (497)
T ss_dssp             -----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCT
T ss_pred             ChhhHHHHHHhHHHHHhCCC--------HHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCC
Confidence            78888888877766665544        2344444555555554  5677777777776654  8899999999999999


Q ss_pred             CChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 014516          243 ADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRFLSMY  311 (423)
Q Consensus       243 ~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (423)
                      .|-.+|++++.+.....                    -..+.+.+..++|..+|....++.....++..
T Consensus       184 ~~~~~~~~Lg~~~~~~~--------------------~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKG--------------------DHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TBSHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999998876631                    25678888999999999999999987766643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0046  Score=56.70  Aligned_cols=168  Identities=8%  Similarity=-0.046  Sum_probs=121.6

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHc-------cCC----cCCHHHHHHHHHHHHH-hCCCchhHhHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KRL----LPILMDELHLSALVLS-YSPKSEQAWSHRRWVIN  178 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~-------~~~----~~~~~~EL~~~~~lL~-~nPK~y~~W~hRrwll~  178 (423)
                      ...++...++.+|...|.+..+|..=-+.+..       .+.    ....++...+...++. .+|++..+|..-..+..
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35678888999999999999999754443322       110    1234666778888886 58999999987776666


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCch-hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLR  257 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~  257 (423)
                      ..+.        ++....+.+++++..|+++. +|.....++.+.+.  .+...+...+++...|.+.+.|.....+...
T Consensus       111 ~~~~--------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~--~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         111 SRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             hccc--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5544        56777899999999999976 79777666655543  5677788899999999999998877665444


Q ss_pred             hhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 014516          258 NLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRRF  307 (423)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr~  307 (423)
                      ..+                   -.+........++..+|.+..+|...-.
T Consensus       181 ~~~-------------------~~~~a~~i~e~~l~~~p~~~~~w~~y~~  211 (308)
T d2onda1         181 CSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYID  211 (308)
T ss_dssp             TSC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcc-------------------CHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            211                   1344556667788889999999976443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.023  Score=51.80  Aligned_cols=156  Identities=5%  Similarity=-0.137  Sum_probs=119.6

Q ss_pred             chHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchh-HhHHHHHHHHHhhhccChhH
Q 014516          111 LAIEVMIHSKALLL-LSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQ-AWSHRRWVINMISRNCSTLQ  188 (423)
Q Consensus       111 ~~~~~L~~t~~lLl-~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~-~W~hRrwll~~l~~~~~~~~  188 (423)
                      ..+++...+..++. .+|.+...|..-..+....+   ..+....+.+.+|...|+++. +|.....++.+.+.      
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~---~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~------  149 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG------  149 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC------
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC------
Confidence            34677788888886 58999999998888887775   688999999999999998865 79888777776654      


Q ss_pred             HhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCC
Q 014516          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDN  268 (423)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~  268 (423)
                        ++....+..++++..|.+.+.|.....+...... ..+......++.+..+|.+...|.....++.+..         
T Consensus       150 --~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~-~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g---------  217 (308)
T d2onda1         150 --IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN---------  217 (308)
T ss_dssp             --HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred             --hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC---------
Confidence              5677889999999999999999876665444322 3567788889999999999999987766555431         


Q ss_pred             CCCCchhchHHHHHHHHHHHHHHHhhcCCC
Q 014516          269 NSSGYFVETYQIWKEELDWNESLIKQYVGR  298 (423)
Q Consensus       269 ~~~~~~~~~~~~~~eEL~~~~~~I~~~p~n  298 (423)
                                 -+++.-...+++|...|.+
T Consensus       218 -----------~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         218 -----------EDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             -----------CHHHHHHHHHHHHHSSSSC
T ss_pred             -----------ChHHHHHHHHHHHHhCCCC
Confidence                       1344555667778877655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0042  Score=61.55  Aligned_cols=134  Identities=9%  Similarity=0.003  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhH
Q 014516          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~  191 (423)
                      ...++......+.++|++..+|+..+......+   ...+++......+..+|  +.++.+.+.+......        +
T Consensus       102 Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~--------~  168 (497)
T d1ya0a1         102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQT---HTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ--------T  168 (497)
T ss_dssp             HHHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCC---CHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc--------H
Confidence            355566666677889999999999888777664   45566666666666554  5677777776666544        7


Q ss_pred             HHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhh
Q 014516          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLE  260 (423)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~  260 (423)
                      ...+..+.++++.+|.+..+|++.+.+....+.  ..+.+.+..+.+..++....|+.....++.+...
T Consensus       169 ~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~--~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGD--HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC--HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            889999999999999999999999999887665  7889999999999999999999999988887643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.26  E-value=0.021  Score=46.90  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-----------h
Q 014516          112 AIEVMIHSKALLLLSCDF------------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-----------Q  168 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~------------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-----------~  168 (423)
                      .++++..++++|.++|+.            ..+|+.+..++..++   .+++.+..++..|...|+..           .
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC---ccchhhHhhhhhhhcccccccccccccchhHH
Confidence            477888888888888764            468888999998886   78899999998887655432           2


Q ss_pred             HhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHH
Q 014516          169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS  220 (423)
Q Consensus       169 ~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (423)
                      +++.|.-++..++.        +++.+....++++.+|+......-+.-+..
T Consensus       102 a~~~~g~~~~~lg~--------~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~  145 (156)
T d2hr2a1         102 AVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETPGKERMME  145 (156)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             HHhhhHHHHHHHHH--------HHHHHHHHHHHHHhhHHhhchHHHHHHHHH
Confidence            45566777777665        789999999999999998888766655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.043  Score=41.25  Aligned_cols=77  Identities=9%  Similarity=0.006  Sum_probs=58.3

Q ss_pred             HHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcC
Q 014516          134 NSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (423)
Q Consensus       134 n~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (423)
                      ...+.+....+   ++.+++.++..++.+.|++.       .++++..++..+++.        +++.+....++++.+|
T Consensus         9 ~~lG~~~~~~g---~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~--------~~~A~~~y~~aL~l~P   77 (95)
T d1tjca_           9 FELGKVAYTEA---DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--------LDKALLLTKKLLELDP   77 (95)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC--------hHHHHHHHHHHHHhCc
Confidence            34455555554   79999999999999877664       455666666666555        7889999999999999


Q ss_pred             CCchhchHHHHHHHh
Q 014516          207 MNYRAWNHRCWLVSF  221 (423)
Q Consensus       207 kNY~AW~hR~wll~~  221 (423)
                      .+-.|++....+-+.
T Consensus        78 ~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          78 EHQRANGNLKYFEYI   92 (95)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999887766443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.048  Score=40.94  Aligned_cols=66  Identities=12%  Similarity=0.086  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHh
Q 014516          112 AIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMI  180 (423)
Q Consensus       112 ~~~~L~~t~~lLl~nPe~-------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l  180 (423)
                      ..+++.+.+.+|.++|++       ..+++..+.+....+   .+++++.....+|..+|++..+++....+-+.+
T Consensus        21 y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g---~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC---ChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            456666666666665544       466777788777775   799999999999999999999999887654433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.69  E-value=0.03  Score=45.92  Aligned_cols=96  Identities=6%  Similarity=-0.073  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHHHhCCCch------------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCch-----
Q 014516          148 ILMDELHLSALVLSYSPKSE------------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR-----  210 (423)
Q Consensus       148 ~~~~EL~~~~~lL~~nPK~y------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-----  210 (423)
                      .+++++..++.+|.++|+.+            .+|+.+..++..++.        +...+..+.+++..+|++..     
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------cchhhHhhhhhhhcccccccccccc
Confidence            69999999999999988865            456667777776665        67777788888877665433     


Q ss_pred             ------hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHHH
Q 014516          211 ------AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRRR  253 (423)
Q Consensus       211 ------AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~~  253 (423)
                            +++.++-++..++.  +++.++.+.+.+++.+.+.....-+..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~--~eeA~~~~~~Al~l~~~~~~~~~~~~~  142 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKER  142 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             cchhHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhhHHhhchHHHHHH
Confidence                  44556667777765  788999999988776655544433333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.63  Score=41.21  Aligned_cols=185  Identities=4%  Similarity=-0.140  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHccCCcCCHHHHH
Q 014516           80 PVYKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKRLLPILMDEL  153 (423)
Q Consensus        80 ~lY~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~------nPe~~TaWn~Rk~lL~~~~~~~~~~~EL  153 (423)
                      .-|..|...+.++-..|+...          ..++++.++.+++.+      .++..++|+..+.+....+   .+++++
T Consensus        31 ~~~~~Aa~~y~~aa~~y~~~~----------~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~---~~~~A~   97 (290)
T d1qqea_          31 YKFEEAADLCVQAATIYRLRK----------ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAV   97 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT----------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCc----------CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC---CcHHHH
Confidence            346667666766665565432          247888888888887      3455688888999888875   789999


Q ss_pred             HHHHHHHHhCCCch------hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCC------chhchHHHHHHHh
Q 014516          154 HLSALVLSYSPKSE------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSF  221 (423)
Q Consensus       154 ~~~~~lL~~nPK~y------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~  221 (423)
                      ..+..++...++..      .++..-.-++..   ..    .-+++.+.+..++++.+++.      ..++...+.+...
T Consensus        98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~----~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_          98 DSLENAIQIFTHRGQFRRGANFKFELGEILEN---DL----HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TT----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHhhhcccchhHHHHHHHHHHhHhh---HH----HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence            99998887655442      111111111111   00    12678888888888776543      2335555666655


Q ss_pred             cChhhHHHHHHHHHHHHhccCCChh-HHHHHH----HHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcC
Q 014516          222 MTREQVLDELKKSRNWSGLHVADNS-CFHYRR----RLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYV  296 (423)
Q Consensus       222 ~~~~~~~~EL~~~~k~i~~d~~N~S-aW~yR~----~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p  296 (423)
                      .+  .+.+.+..+.+.+...+.+.. .|.-..    ..+..+..                  .-+........+++..+|
T Consensus       171 ~g--~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         171 DG--QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA------------------TDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             TT--CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT------------------TCHHHHHHHHHGGGCC--
T ss_pred             cC--hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHh------------------ccHHHHHHHHHHHHHhCC
Confidence            54  489999999999998877642 222211    11111110                  124556677788888888


Q ss_pred             CCccHHHH
Q 014516          297 GREALWLH  304 (423)
Q Consensus       297 ~neSaW~y  304 (423)
                      .....+.+
T Consensus       231 ~~~~sre~  238 (290)
T d1qqea_         231 NFADSRES  238 (290)
T ss_dssp             -------H
T ss_pred             CccchHHH
Confidence            77666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.35  E-value=0.055  Score=48.98  Aligned_cols=129  Identities=6%  Similarity=-0.149  Sum_probs=89.9

Q ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHh
Q 014516          111 LAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~  190 (423)
                      ..++++..+..++..+|++..++.....++...+   ++++++..+..++..+|++..+|...+.++......       
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G---~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~-------   80 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-------   80 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc-------
Confidence            4689999999999999999999999999999886   899999999999999999999998877776544321       


Q ss_pred             HHHHHHHHHH-HHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChhHHHHHH
Q 014516          191 IERESELVEK-IAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNSCFHYRR  252 (423)
Q Consensus       191 ~~~EL~~~~~-~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR~  252 (423)
                       .+.+.-... .+..+|.+..++..+.-+....  ...++..+...++....|.+-..|+-+.
T Consensus        81 -~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~--gd~~~A~~~~~~a~e~~p~~~~~~~~~~  140 (264)
T d1zbpa1          81 -KDFAQGAATAKVLGENEELTKSLVSFNLSMVS--QDYEQVSELALQIEELRQEKGFLANDTS  140 (264)
T ss_dssp             -HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             -HHHHHHhhhhhcccCchHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCCCccccccC
Confidence             111110011 1112332222223333233222  2477888889999999988877776544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.40  E-value=1.5  Score=36.38  Aligned_cols=101  Identities=13%  Similarity=0.063  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHccCCcCCHHHHHHHHHHHHH
Q 014516           82 YKAAKHAFISALRQYKTPGNFSGKSQDDTLAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKRLLPILMDELHLSALVLS  161 (423)
Q Consensus        82 Y~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~nPe~~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~  161 (423)
                      +..|.+.|.+++..|+..--.      ......  -.......+.+.+..+|..+..++...+   .+.+.+..+..++.
T Consensus        27 ~e~A~~~~~~AL~l~rG~~l~------~~~~~~--w~~~~r~~l~~~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~   95 (179)
T d2ff4a2          27 FEQASRHLSAALREWRGPVLD------DLRDFQ--FVEPFATALVEDKVLAHTAKAEAEIACG---RASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTG------GGTTST--THHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccccc------cCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHH
Confidence            556777788888766532100      000000  1122334556678899999999988886   89999999999999


Q ss_pred             hCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHH
Q 014516          162 YSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (423)
Q Consensus       162 ~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (423)
                      .+|.+..+|.....++..++.        ..+.+..+.++
T Consensus        96 ~~P~~e~~~~~l~~al~~~Gr--------~~eAl~~y~~~  127 (179)
T d2ff4a2          96 EHPYREPLWTQLITAYYLSDR--------QSDALGAYRRV  127 (179)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHH
Confidence            999999999999999988876        45666655554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.04  E-value=1.6  Score=36.15  Aligned_cols=101  Identities=8%  Similarity=-0.106  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch--------hHhHHHHHHHHHhhhccC------hhHHhHHHHHHH
Q 014516          132 AWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE--------QAWSHRRWVINMISRNCS------TLQWIIERESEL  197 (423)
Q Consensus       132 aWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y--------~~W~hRrwll~~l~~~~~------~~~~~~~~EL~~  197 (423)
                      ++..++..+...+   +.++....+..+|...+..+        +++..|..+-.....-..      ....-+.+.+..
T Consensus        13 ~~~~~g~~~~~~g---~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          13 AEKTAGVHAAAAG---RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            4444444444443   56777777777777655432        233333322211100000      001127889999


Q ss_pred             HHHHHHhcCCCchhchHHHHHHHhcChhhHHHHHHHHHHH
Q 014516          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLDELKKSRNW  237 (423)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~k~  237 (423)
                      +.++++.+|.+-.+|.+...++..++.  ..+.+..+.+.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr--~~eAl~~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence            999999999999999999999888876  55566555553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.44  E-value=0.29  Score=43.93  Aligned_cols=131  Identities=12%  Similarity=-0.016  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchhchHHHHHHHhcChhh
Q 014516          147 PILMDELHLSALVLSYSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (423)
Q Consensus       147 ~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (423)
                      .++++++..+...++.+|++..++.....++...+.        +++.+..+.++++.+|.+-.+|...+.++.....  
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~--   79 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--   79 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc--
Confidence            368899999999999999999999888888877766        7889999999999999888888776666543211  


Q ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhhcccccCCCCCCCchhchHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 014516          227 VLDELKKSRNWSGLHVADNSCFHYRRRLMLRNLEGFCYTQDNNSSGYFVETYQIWKEELDWNESLIKQYVGREALWLHRR  306 (423)
Q Consensus       227 ~~~EL~~~~k~i~~d~~N~SaW~yR~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~eEL~~~~~~I~~~p~neSaW~yrr  306 (423)
                      ..+.+.....  ..-+.+-..|..+..........                 .-.++..+...++....|..--.|+-+.
T Consensus        80 ~~~a~~~~~~--~~~~~~p~~~~~~l~~a~~~~~~-----------------gd~~~A~~~~~~a~e~~p~~~~~~~~~~  140 (264)
T d1zbpa1          80 RKDFAQGAAT--AKVLGENEELTKSLVSFNLSMVS-----------------QDYEQVSELALQIEELRQEKGFLANDTS  140 (264)
T ss_dssp             HHHHTTSCCC--EECCCSCHHHHHHHHHHHHHHHH-----------------TCHHHHHHHHHHHHHHCCCCCEEETTEE
T ss_pred             cHHHHHHhhh--hhcccCchHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHhcCCCCCccccccC
Confidence            1111111000  01122334454433322221111                 1256777888889999999888876543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.10  E-value=1  Score=35.64  Aligned_cols=69  Identities=4%  Similarity=-0.180  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCchhHhHHHHHHHHHhh
Q 014516          110 TLAIEVMIHSKALLLLSCDFA-TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSEQAWSHRRWVINMIS  181 (423)
Q Consensus       110 ~~~~~~L~~t~~lLl~nPe~~-TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y~~W~hRrwll~~l~  181 (423)
                      ....+++.+.+.++..+|++. .+|.+-...--.++   ++.+++.+++.+|.++|.+.++.+-+.-|-.++.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg---dy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG---EYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            345788999999999999875 68888887777765   8999999999999999999999988877665553

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.22  E-value=1.9  Score=33.98  Aligned_cols=81  Identities=5%  Similarity=-0.036  Sum_probs=60.1

Q ss_pred             HHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch-hHhHHHHHHHHHhhhccChhHHhHHHHHHHHHHHHHhcCCCchh
Q 014516          133 WNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE-QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA  211 (423)
Q Consensus       133 Wn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y-~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (423)
                      .+|=--++.+.. ..++++.+.++..++..+|... ..|++-.-..-+++.        +.+.+.++.++++.+|.|-.|
T Consensus        39 F~YAw~Lv~S~~-~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd--------y~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          39 FNYAWGLIKSTD-VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--------YSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             HHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHcCCc-HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHccCCCcHHH
Confidence            333333444332 3467889999999999998763 677777766666654        789999999999999999999


Q ss_pred             chHHHHHHHhc
Q 014516          212 WNHRCWLVSFM  222 (423)
Q Consensus       212 W~hR~wll~~~  222 (423)
                      ..-+.-|-..+
T Consensus       110 ~~L~~~Ie~~~  120 (124)
T d2pqrb1         110 GALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98877665554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=82.49  E-value=13  Score=31.29  Aligned_cols=123  Identities=11%  Similarity=-0.087  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCch------hHhHHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDFA-----TAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKSE------QAWSHRRWVINM  179 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~~-----TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~y------~~W~hRrwll~~  179 (423)
                      ..++++...+.+|..+|++.     .+++..+.+....+   .+++++..+..++...|+..      .++..+.++...
T Consensus        27 ~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG---ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            35889999999999999873     47777788777775   78999999999988655432      222233333333


Q ss_pred             hhhccChhHHhHHHHHHHHHHHHHhcCCCc------h--hchHHHHHHHhcChhhHHHHHHHHHHHHhccCCChh
Q 014516          180 ISRNCSTLQWIIERESELVEKIAERSKMNY------R--AWNHRCWLVSFMTREQVLDELKKSRNWSGLHVADNS  246 (423)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~--AW~hR~wll~~~~~~~~~~EL~~~~k~i~~d~~N~S  246 (423)
                      .+.        +...+..+..++...++..      .  +...+..+....+  .+........+.+...+....
T Consensus       104 ~~~--------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_         104 QGF--------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA--RLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHH--------HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc--chhhhHHHHHHHHHHhhhhhh
Confidence            222        4555566666665444332      1  2222334443333  356667777777766555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.47  E-value=4.7  Score=35.06  Aligned_cols=131  Identities=8%  Similarity=0.031  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHccCCcCCHHHHHHHHHHHHHhCCCc------hhHhHHHHHHHH
Q 014516          111 LAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKRLLPILMDELHLSALVLSYSPKS------EQAWSHRRWVIN  178 (423)
Q Consensus       111 ~~~~~L~~t~~lLl~nPe~------~TaWn~Rk~lL~~~~~~~~~~~EL~~~~~lL~~nPK~------y~~W~hRrwll~  178 (423)
                      ..++++..+..++.+.++.      ..++..-..++...  ..++++++.+...++...++.      ..++.....++.
T Consensus        92 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~  169 (290)
T d1qqea_          92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND--LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH--HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence            3577888888888776555      34444455555332  137899999999988754332      344666666666


Q ss_pred             HhhhccChhHHhHHHHHHHHHHHHHhcCCCchh-chHHHHH----HHhcChhhHHHHHHHHHHHHhccCCChhHHHHH
Q 014516          179 MISRNCSTLQWIIERESELVEKIAERSKMNYRA-WNHRCWL----VSFMTREQVLDELKKSRNWSGLHVADNSCFHYR  251 (423)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A-W~hR~wl----l~~~~~~~~~~EL~~~~k~i~~d~~N~SaW~yR  251 (423)
                      .++.        +.+.+..+.+++...|.+.-. |.-+...    +..+...........+++.++.+|....++.++
T Consensus       170 ~~g~--------y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~  239 (290)
T d1qqea_         170 LDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN  239 (290)
T ss_dssp             HTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred             HcCh--------HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence            6654        789999999999999887532 2211111    111112346777888889999998877766553