Citrus Sinensis ID: 014562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSRAPRRRRLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccEHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHccccccEEEcccccccHHHHHHHHHccccccccccEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgeetsdtmnldlnlgpgpeaqsgsiptevvnlddwvdePIDRLREAVRLRSRQRyrwrqvpippesrnlpmELDQLLshsangstlqtgegsvaaeeranevpktcenntgfledevsekkdddekgsgndgsffdcnicldlsrdpvvtccghlfcwpclyrwlhvhsdakecpvckgevtvknitpiygrgnstrepeedsslkiplrpqgrrIESLRQTIQRTAYSFPVEEMIRRLGSRfdlardltplrdgssaretGERANSLINRILtsrgirgeqntvsappddvdvqsgsnaeGEARFLHSLLMRRQAqahraptfsssfsstLNSAERVLEFYFRnlperrnqeqpsppvddrdsfsSIAAVINSESQMDTAVEIDSMVSlstsssrrrsdssrvsdvdsgdsraprrrrln
Flexible Loop (DISEMBL)
MGEETSDTMNLDLNLGPGPEAQSGSIPTEvvnlddwvdepIDRLREAvrlrsrqryrwrqvpippesrnLPMELDQLLSHSANGSTLQTGEGSVAAeeranevpktcenntgfledevsekkdddekgsgndGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECpvckgevtvknitpiygrgnstrepeedsslkiplrpqgrrieslrqtiqrtaysfpvEEMIRRLGsrfdlardltplrdgssaretgeranSLINriltsrgirgeqntvsappddvdVQSGSNAEGEARFLHSLLMRRQAQAHraptfsssfsstlnsAERVLEFYFRNlperrnqeqpsppvddrdSFSSIAAVINSESQMDTAVEIDSMVslstsssrrrsdssrvsdvdsgdsraprrrrln
Low Complexity Region (SEG)
MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVrlrsrqryrwrQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLedevsekkdddekgsgndgsFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMRRQAQAHRAPtfsssfsstLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIdsmvslstsssrrrsdssrvsdvdsgdsrAPRRRRLN
Disordered region (IsUnstruct)
****************************EVVNLDDWVDEPIDRLREAVRLRSRQRYRWR**************************************************************************SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG*******************************IQRTAYSFPVEEMIRRLGSRFDL*******************************************************************************************RVLEFYFR*****************************************************************************
Disordered Region (DISOPRED)
******D*********************************************************************************************************************************DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG**************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********MNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLSHSANG******************VPKTCENNTGFLEDE************GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR**************IPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLR**********RANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMRR****************TLNSAERVLEFYFRNLPER*************DSFSSIAAVINSESQMDTAVEIDSM**********************************
Disordered Region (DISPRO)
***********D*****************VVNLDDWVDEPIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLS*****************************************************GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRG************************************FPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPE****************FSSI***INSE**********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSRAPRRRRLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q8GUK7	243	E3 ubiquitin-protein liga	no	no	0.246	0.427	0.410	2e-23
Q99942	180	E3 ubiquitin-protein liga	yes	no	0.227	0.533	0.436	8e-22
Q5M807	180	E3 ubiquitin-protein liga	yes	no	0.227	0.533	0.436	2e-21
O35445	180	E3 ubiquitin-protein liga	yes	no	0.227	0.533	0.436	2e-21
Q91YT2	192	E3 ubiquitin-protein liga	no	no	0.206	0.453	0.477	5e-21
Q568Y3	192	E3 ubiquitin-protein liga	no	no	0.206	0.453	0.477	8e-21
Q96GF1	192	E3 ubiquitin-protein liga	no	no	0.206	0.453	0.477	9e-21
Q6R567	252	E3 ubiquitin-protein liga	N/A	no	0.182	0.305	0.471	1e-20
Q5RFK9	192	E3 ubiquitin-protein liga	no	no	0.206	0.453	0.477	2e-20
O64425	249	E3 ubiquitin-protein liga	no	no	0.289	0.489	0.403	3e-20

>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 13/117 (11%)

Query: 109 NNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV 168
           ++ GF+  +          G  N+   FDCNICLD + DPVVT CGHLFCWPC+Y+WLHV
Sbjct: 15  HDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV 74

Query: 169 HSDA-------KECPVCKGEVTVKNITPIYGRGNST------REPEEDSSLKIPLRP 212
              +         CPVCK  +T+ ++ P+YGRG S+       + ++  S  IP RP
Sbjct: 75  QLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP 131

E3 ubiquitin-protein ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 7/103 (6%)

Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
            +E++D   +G     G  G+ F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    + +
Sbjct: 3   AAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQ 62

Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
           ECPVCK  ++ + + P+YGRG+      +D  LK P RPQG+R
Sbjct: 63  ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin and Salmonella type III secreted protein sopA. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150' leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 7/103 (6%)

Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
            +E++D   +G     G   + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +
Sbjct: 3   AAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62

Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
           ECPVCK  ++ + + P+YGRG+      +D  LK P RPQG+R
Sbjct: 63  ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150' leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 7/103 (6%)

Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
            +E++D   +G     G   + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +
Sbjct: 3   AAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62

Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
           ECPVCK  ++ + + P+YGRG+      +D  LK P RPQG+R
Sbjct: 63  ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150 'leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
           SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + 
Sbjct: 30  SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89

Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
           P+YGRG++    ++D   K P RPQG+R E
Sbjct: 90  PLYGRGSTG---QQDPREKTPPRPQGQRPE 116

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1

 Score =  102 bits (253), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
           SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + 
Sbjct: 30  SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89

Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
           P+YGRG++    ++D   K P RPQG+R E
Sbjct: 90  PLYGRGSTG---QQDPREKTPPRPQGQRPE 116

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
           SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + 
Sbjct: 30  SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89

Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
           P+YGRG++    ++D   K P RPQG+R E
Sbjct: 90  PLYGRGSTG---QQDPREKTPPRPQGQRPE 116

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 12/89 (13%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE--------CPVCKGEVTVKNI 187
           FDCNICLD   +PV+T CGHL+CWPC+Y+W++  S + E        CPVCK EV+ K +
Sbjct: 39  FDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTL 98

Query: 188 TPIYGRGNSTREPEEDSS----LKIPLRP 212
            P+YGRG  + +P E  +    + IP RP
Sbjct: 99  IPLYGRGGQSTKPSEGKAPNLGIVIPQRP 127

E3 ubiquitin-protein ligase required for aquaporin levels regulation.

Capsicum annuum (taxid: 4072)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
           SG   S F+CNICLD ++D V++ CGHLFCWPCL++WL    + + CPVCK  ++   + 
Sbjct: 30  SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89

Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
           P+YGRG++    ++D   K P RPQG+R E
Sbjct: 90  PLYGRGSTG---QQDPREKTPPRPQGQRPE 116

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 80/151 (52%), Gaps = 29/151 (19%)

Query: 72  MELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGN 131
           M LDQ    +A    L  GEG+   + +  E P T           VS   DD       
Sbjct: 1   MALDQSFEDAALLGELY-GEGAFCFKSKKPE-PIT-----------VSVPSDD------T 41

Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDA--------KECPVCKGEVT 183
           D S FDCNICLD  ++PVVT CGHLFCWPC+++WL V S +        ++CPVCK +V+
Sbjct: 42  DDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVS 101

Query: 184 VKNITPIYGRGNSTREPEEDSSLKIPLRPQG 214
              + P+YGRG  T + E  +S  +P RP G
Sbjct: 102 HSTLVPLYGRGRCTTQEEGKNS--VPKRPVG 130

E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of aquaporin PIP2-1. Forms a ubiquitin ligase complex in cooperation with the E2 enzymes UCB8/UCB10.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
224091605	414	predicted protein [Populus trichocarpa]	0.969	0.987	0.688	1e-154
255579773	427	rnf5, putative [Ricinus communis] gi|223	0.997	0.985	0.689	1e-153
358248349	442	uncharacterized protein LOC100811099 [Gl	0.990	0.945	0.641	1e-149
224138094	446	predicted protein [Populus trichocarpa]	0.995	0.941	0.634	1e-147
356504872	442	PREDICTED: uncharacterized protein LOC10	0.990	0.945	0.659	1e-146
357509977	453	RING finger protein [Medicago truncatula	0.981	0.913	0.594	1e-142
225441479	410	PREDICTED: uncharacterized protein LOC10	0.957	0.985	0.705	1e-136
388498740	446	unknown [Lotus japonicus]	0.981	0.928	0.632	1e-135
449530668	424	PREDICTED: uncharacterized protein LOC10	0.983	0.978	0.636	1e-128
449437567	424	PREDICTED: uncharacterized protein LOC10	0.983	0.978	0.634	1e-127

>gi|224091605|ref|XP_002309298.1| predicted protein [Populus trichocarpa] gi|222855274|gb|EEE92821.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/427 (68%), Positives = 345/427 (80%), Gaps = 18/427 (4%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSG-SIPTEVVNLDDWVDEPIDRLREAVRL---RSRQRY 56
           MGE TSDTMNLDLNLGPGPEA S      E +NLDDWVD+PI R+REAVR+    +R+  
Sbjct: 1   MGEATSDTMNLDLNLGPGPEAGSELEASNEAMNLDDWVDDPIMRIREAVRIGAREAREHR 60

Query: 57  RWRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLED 116
           RWRQ  +P ++++L +EL+QL+++S +  TLQ GEGSVAAEER NEVPK CENN GFLED
Sbjct: 61  RWRQFQVPQQTQSLSVELNQLMANSGHVGTLQAGEGSVAAEERTNEVPKMCENNNGFLED 120

Query: 117 EVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECP 176
           EVS+KKDD EK SGNDGSF+DCNICLDL+ DPVVTCCGHLFCWPCLY+WLHVHSDAKECP
Sbjct: 121 EVSQKKDDVEKASGNDGSFYDCNICLDLATDPVVTCCGHLFCWPCLYQWLHVHSDAKECP 180

Query: 177 VCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEM 236
           VCKGEVT+KN+TPIYGRG +TREPEED++L+IP+RP  RR+ESLRQT  R   SFPVEEM
Sbjct: 181 VCKGEVTMKNVTPIYGRGCTTREPEEDTNLEIPVRPHARRVESLRQTASRHLSSFPVEEM 240

Query: 237 IRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQ 296
           IRRLG RFDL RDL+P +D + +R   +R  S++NRI+T RG+R EQN + APPD++   
Sbjct: 241 IRRLGRRFDLPRDLSPPQDSNGSRGAADRTQSILNRIMTYRGMRAEQNPI-APPDEM--- 296

Query: 297 SGSNAEGEARFLHSLLMRR-QAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQ 355
                 G AR  + LL+RR QAQ+ R+ T  ++FSS LNS ER+ E YFRN P  RNQEQ
Sbjct: 297 -----TGPARRANGLLLRRSQAQSLRSSTH-TAFSSALNSTERIAETYFRNHPTGRNQEQ 350

Query: 356 PSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSRA 415
           P  PVDDRDSFSSIAAVINS SQMDTAV  DSMVSLSTSSSRRR+D+SR+SDVDSGDSRA
Sbjct: 351 PQ-PVDDRDSFSSIAAVINSGSQMDTAV--DSMVSLSTSSSRRRNDASRISDVDSGDSRA 407

Query: 416 PRRRRLN 422
           PRRRRLN
Sbjct: 408 PRRRRLN 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579773|ref|XP_002530725.1| rnf5, putative [Ricinus communis] gi|223529739|gb|EEF31679.1| rnf5, putative [Ricinus communis]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 295/428 (68%), Positives = 347/428 (81%), Gaps = 7/428 (1%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQ 60
           MGEETSDTMNLDLNLGPGPE  SGSI +E VN D WVD+P++R+REAVR+ +R R RWR 
Sbjct: 1   MGEETSDTMNLDLNLGPGPEVGSGSISSEAVNFDGWVDDPLERIREAVRISNRARQRWRW 60

Query: 61  --VPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEV 118
                PPES  L +EL+QL+ +S + STLQ GEGSVAAEER NEVPK CENN GFLED+V
Sbjct: 61  RQYQFPPESHTLSVELNQLIGNSDSVSTLQAGEGSVAAEERTNEVPKMCENNNGFLEDDV 120

Query: 119 SEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
           SEK  D EKGSG DGSFFDCNICLDL+ DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC
Sbjct: 121 SEKTGDVEKGSGGDGSFFDCNICLDLATDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 180

Query: 179 KGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIR 238
           KGEVT+KN+TPIYGRG++TREPEED  L+IP RP  RR+ES RQTIQR+++S P+EEMIR
Sbjct: 181 KGEVTIKNVTPIYGRGSNTREPEEDLGLEIPHRPHARRVESWRQTIQRSSFSLPMEEMIR 240

Query: 239 RLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDV-QS 297
           RLGSRFDL RDL P++D +  RE G+R N+L++RI+T RG R EQN ++   D VD+  S
Sbjct: 241 RLGSRFDLTRDLNPMQDSNGVREMGDRTNALLSRIMTLRGQRAEQNPMAPLDDIVDLTHS 300

Query: 298 GSN---AEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQE 354
           G++   A  +AR +HSLL+RR     +  +  +S +S LNSAER++E YFRN P  RNQ+
Sbjct: 301 GTSSPEAARQARRIHSLLLRRSQSNSQRSSTHNSHTSALNSAERLIEAYFRNHPTGRNQD 360

Query: 355 QPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSR 414
            P  PVDDRDSFSSIAAVINSESQ+DTAVEIDSM SLSTSSSRRR+D+SRVSD+D+ DSR
Sbjct: 361 PPL-PVDDRDSFSSIAAVINSESQVDTAVEIDSMGSLSTSSSRRRNDTSRVSDMDTVDSR 419

Query: 415 APRRRRLN 422
           APRRRR N
Sbjct: 420 APRRRRFN 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248349|ref|NP_001240122.1| uncharacterized protein LOC100811099 [Glycine max] gi|255645563|gb|ACU23276.1| unknown [Glycine max]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/446 (64%), Positives = 335/446 (75%), Gaps = 28/446 (6%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYR--- 57
           M EETSD MNLDLNLGPGPE ++G +  E VNLDDW+ EP+ R+ EAVR   ++      
Sbjct: 1   MEEETSDAMNLDLNLGPGPEPETGPMSNEAVNLDDWIGEPLQRISEAVRRARQRWRWRHL 60

Query: 58  ---------------WRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANE 102
                           R   IPPE+RN+ +EL+  L +S NGS LQ GEGSVAAEER  E
Sbjct: 61  PLPHPEFHAHFPTEATRHFQIPPEARNISVELNHFLVNSGNGSALQAGEGSVAAEERMEE 120

Query: 103 VPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCL 162
           VPK C+N  G  EDE S+KK+D EKGSGNDG FFDCNICLDL+RDPVVTCCGHLFCWPCL
Sbjct: 121 VPKACDNVNGVAEDETSQKKEDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCL 180

Query: 163 YRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQ 222
           YRWLH+HSDAKECPVCKGEVT+K++TP+YGRGN+ R PEEDS+LKIP RPQ +R+ESLRQ
Sbjct: 181 YRWLHLHSDAKECPVCKGEVTLKSVTPVYGRGNNVRGPEEDSALKIPPRPQAKRVESLRQ 240

Query: 223 TIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGE 282
           TIQR A++ PVEEMIRRLGSR DL RDL    +  +ARET ER  SL++R LT+RG+R E
Sbjct: 241 TIQRNAFALPVEEMIRRLGSRIDLTRDLVQPPEPDAARETAERTTSLLSRFLTARGMRRE 300

Query: 283 QNTVSAPPDDV------DVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSA 336
              + APP+DV      +V +    +  +R    LL  R+ Q+HRA    S+ SS L SA
Sbjct: 301 HQNLVAPPEDVMGLAQNNVNTSEAGDPRSRVQSHLL--RRTQSHRATL--STLSSALTSA 356

Query: 337 ERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSS 396
           ER++E YFR+ P  RNQEQP PPVDDRDSFSSI AVINSESQ+DTAVEIDSMVSLSTSSS
Sbjct: 357 ERLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSS 416

Query: 397 RRRSDSSRVSDVDSGDSRAPRRRRLN 422
           RRR+D+SRVSDVDSGDSRAPRRRRLN
Sbjct: 417 RRRNDASRVSDVDSGDSRAPRRRRLN 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138094|ref|XP_002322728.1| predicted protein [Populus trichocarpa] gi|222867358|gb|EEF04489.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/446 (63%), Positives = 333/446 (74%), Gaps = 26/446 (5%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSG-SIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWR 59
           M  ETSDTMNLDLNLGPGPEA+S    P + VNLDDWVD+PI R+REAVR R+RQ  RWR
Sbjct: 1   MDAETSDTMNLDLNLGPGPEAESELEAPNDAVNLDDWVDDPIVRIREAVRFRARQHRRWR 60

Query: 60  QVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVS 119
           Q  +P +S++L +EL+QL+ +  +  TLQ GEGSVAAEER NE PK CENN  FLEDEVS
Sbjct: 61  QFQLPLQSQSLSVELNQLMGNPGHVGTLQAGEGSVAAEERTNEAPKLCENNNVFLEDEVS 120

Query: 120 EKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
           EKKDD EK S  DGSFFDCNICLDL+ DPVVTCCGHLFCWPCLY+WLHVHSDAKECPVCK
Sbjct: 121 EKKDDVEKTSDIDGSFFDCNICLDLATDPVVTCCGHLFCWPCLYQWLHVHSDAKECPVCK 180

Query: 180 GEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRR 239
           GEVT+KN+TPIYGRG +TREP ED++L+IP+RP  RR+ESLRQT  R  YSFPVEEM+RR
Sbjct: 181 GEVTMKNVTPIYGRGCTTREPVEDTNLEIPIRPHARRVESLRQTASRHLYSFPVEEMLRR 240

Query: 240 LGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVDVQSGS 299
           LGSR D A+DL+  +D + +R   +R  SL+NRI+T RG+R EQN +  P + VD+   S
Sbjct: 241 LGSRLDFAQDLSLPQDSNGSRGAADRTQSLLNRIMTYRGMRAEQNPIGPPDEIVDLTQTS 300

Query: 300 NAE---GEARFLH---------------------SLLMRRQAQAHRAPTFSSSFSSTLNS 335
            +    G AR LH                     ++L+ R++  H   + S +  S LNS
Sbjct: 301 PSSPVGGHARRLHDIVDLIHSGTASTETGSARRANVLLPRRSHPHSQRSSSHTAFSPLNS 360

Query: 336 AERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSS 395
            E ++E YFR     RN EQP  PVDDRDSFSSIAAVINSESQMDTA EIDS VSLSTSS
Sbjct: 361 TEGLVETYFRTHTIGRNHEQPQ-PVDDRDSFSSIAAVINSESQMDTAAEIDSPVSLSTSS 419

Query: 396 SRRRSDSSRVSDVDSGDSRAPRRRRL 421
           SRRR+++SRVSDVDSGDSRAPRRRRL
Sbjct: 420 SRRRNNASRVSDVDSGDSRAPRRRRL 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504872|ref|XP_003521218.1| PREDICTED: uncharacterized protein LOC100782225 isoform 1 [Glycine max] gi|356504874|ref|XP_003521219.1| PREDICTED: uncharacterized protein LOC100782225 isoform 2 [Glycine max]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 294/446 (65%), Positives = 341/446 (76%), Gaps = 28/446 (6%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQ 60
           M EETSD MNLDLNLGPGPE ++G I  E VNLDDW+ EP+ R+ EAVR R+RQR+RWRQ
Sbjct: 1   MEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRYRARQRWRWRQ 60

Query: 61  VP-------------------IPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERAN 101
           +P                   IPPE+ N+ +EL+  L +S NGS LQ GEGSVAAEER  
Sbjct: 61  LPLPPPEFHAHFPTEATRHFQIPPEAHNISVELNHFLVNSGNGSALQAGEGSVAAEERME 120

Query: 102 EVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPC 161
           EVPK CEN  G  EDE S+KK D EKGSGNDG FFDCNICLDL+RDPVVTCCGHLFCW C
Sbjct: 121 EVPKACENINGVAEDEASQKKGDIEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWSC 180

Query: 162 LYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLR 221
           LYRWLH+HSDAKECPVCKGEVT+K++TPIYGR N+ R PEEDS+LKIP RPQ +R+ESLR
Sbjct: 181 LYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRANNVRGPEEDSALKIPPRPQAKRVESLR 240

Query: 222 QTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRG 281
           QTIQR A++ PVEEMIRRLGSR +L RDL    +  +ARET ER  SL+ R LT++GIR 
Sbjct: 241 QTIQRNAFALPVEEMIRRLGSRIELTRDLVQPPEPDAARETAERTTSLL-RFLTAQGIRR 299

Query: 282 EQNTVSAPPDDVDVQSGSNAE----GEARF-LHSLLMRRQAQAHRAPTFSSSFSSTLNSA 336
           E   + APP+DV   + +N      G+ R  + S L+RR  Q+HRA    S+ SS L SA
Sbjct: 300 EHQNLVAPPEDVMGLAQNNVNTSEAGDPRTRVQSHLLRR-TQSHRATL--STLSSALTSA 356

Query: 337 ERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSS 396
           ER++E YFR+ P  RNQEQP PPV+DRDSFSSI AVINSESQ+DTAVEIDSMVSLSTSSS
Sbjct: 357 ERLVEAYFRSNPLGRNQEQPPPPVEDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSS 416

Query: 397 RRRSDSSRVSDVDSGDSRAPRRRRLN 422
           RRR+D+SRVSDVDSGDSRAPRRRRLN
Sbjct: 417 RRRNDASRVSDVDSGDSRAPRRRRLN 442

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509977|ref|XP_003625277.1| RING finger protein [Medicago truncatula] gi|355500292|gb|AES81495.1| RING finger protein [Medicago truncatula]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/461 (59%), Positives = 330/461 (71%), Gaps = 47/461 (10%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAV------------ 48
           M EE SD MNLDLNLGP PE Q+GS+  E +NLD W++EP+ R+ EA             
Sbjct: 1   MAEENSDAMNLDLNLGPDPEPQTGSLGNEGLNLDHWIEEPLQRISEAAARLRGRQRWRWR 60

Query: 49  -----------RLRSRQRYRWRQ-------VPIPPESRNLPMELDQLLSHSANGSTLQTG 90
                      R+  +  Y           + IPPE+RN+ +EL+  L +S NG  LQ G
Sbjct: 61  QLSPPYPQQLQRVLPQPSYHQVHQLAPAPHIYIPPEARNISIELNNFLVNSGNGIGLQAG 120

Query: 91  EGSVAAEERANE--VP-KTCENNTGFLEDEVSEK-KDDDEKGSGNDGSFFDCNICLDLSR 146
           EGSVAA ER  E   P K CENN G +EDE  +K KDD EK  G DG FFDCNICLDL++
Sbjct: 121 EGSVAAVERMEEEEAPLKACENNNGVMEDETLQKNKDDVEKAGGGDGDFFDCNICLDLAK 180

Query: 147 DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSL 206
           +PV+TCCGHLFCW CLYRWLH+HSDA+ECPVCKGEVT+K++TPIYGRGNSTR  EEDS+L
Sbjct: 181 EPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTIKSVTPIYGRGNSTRVLEEDSTL 240

Query: 207 KIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERA 266
           KIP RPQ +R+ESLRQT+QR A++FPVEEMIRRLG+R DLARDL+   +  +AR T ER 
Sbjct: 241 KIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNRIDLARDLSQPNEPENARGTAERT 300

Query: 267 NSLINRILTSRGIRGEQNTVSAPPDDV-----DVQSGSNAEGEARFLHSLLMRRQAQAHR 321
            SL++R LTSRG+R EQN V  PPDD      +  +G+   G+ R + SLL+RR +Q+HR
Sbjct: 301 TSLLSRFLTSRGMRREQNPV-PPPDDAASLNQNNDTGAELGGDTRRVQSLLLRR-SQSHR 358

Query: 322 APTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDT 381
           A    S+ SS L SAER++E YFR+ P  RNQEQP P  DDRDSFSSIAAVINSESQ+DT
Sbjct: 359 ATL--STLSSALTSAERLVEAYFRSNPLGRNQEQPPPSGDDRDSFSSIAAVINSESQVDT 416

Query: 382 AVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSRAPRRRRLN 422
           AVEIDSMV    +SSRRR+D+SR+SDVDSGDSRAPRRRRLN
Sbjct: 417 AVEIDSMV----TSSRRRTDASRLSDVDSGDSRAPRRRRLN 453

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441479|ref|XP_002279934.1| PREDICTED: uncharacterized protein LOC100260713 isoform 1 [Vitis vinifera] gi|359482169|ref|XP_003632722.1| PREDICTED: uncharacterized protein LOC100260713 [Vitis vinifera]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/428 (70%), Positives = 340/428 (79%), Gaps = 24/428 (5%)

Query: 1   MGEETSD-TMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWR 59
           MG+ETSD TMNLDLNLGPGPE  SGS   + V+L+DWV EP+ R+RE++RLR+RQR+RWR
Sbjct: 1   MGDETSDHTMNLDLNLGPGPEPGSGS--NDPVSLNDWVQEPVHRIRESLRLRTRQRWRWR 58

Query: 60  QVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVS 119
           QV IP E+RN+ MEL   ++++ NGS  Q GEGSVAAEER NEVPK CEN T  +EDE  
Sbjct: 59  QVQIPLEARNISMEL---MANTGNGSRPQEGEGSVAAEERDNEVPKMCENKTTHVEDEGL 115

Query: 120 EKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
             KDD EKGS  +GSFFDCNICLDL+RDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK
Sbjct: 116 GGKDDIEKGSSGEGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 175

Query: 180 GEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMIRR 239
           GEVTVKN+TPIYGRGN+  EPEEDSSLK+PLRP  RRIES RQTIQR    FPVEEMIRR
Sbjct: 176 GEVTVKNVTPIYGRGNNIHEPEEDSSLKVPLRPHARRIESFRQTIQRNV-GFPVEEMIRR 234

Query: 240 LGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDVD--VQS 297
           LGSR DL RDL   +D   AR+T ER+NSLINR+LTSRGIR EQN V+ P DDV    QS
Sbjct: 235 LGSRIDLTRDLVQNQDQDGARDTLERSNSLINRLLTSRGIRREQN-VTVPTDDVVDLTQS 293

Query: 298 GSNAEG--EARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQ 355
           G+N     E+R + SL  RR +QAHR+ T SS  S+         E Y R+ P  R QEQ
Sbjct: 294 GTNNSEAVESRRIPSLFPRR-SQAHRSSTLSSFSSA--------FEAYLRSQPIGR-QEQ 343

Query: 356 PSPPVDDRDSFSSIAAVINSESQ-MDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGDSR 414
           P PPVDDRDSFSSIAAVI+SESQ +DTAVEIDSMVSLSTSSSRRR+D+SRVSDVDSGDSR
Sbjct: 344 P-PPVDDRDSFSSIAAVIHSESQTVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSR 402

Query: 415 APRRRRLN 422
           APRRRRLN
Sbjct: 403 APRRRRLN 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498740|gb|AFK37436.1| unknown [Lotus japonicus]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 287/454 (63%), Positives = 332/454 (73%), Gaps = 40/454 (8%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWR- 59
           MGEE SD MNLDLNL PGPE  +     E +NLD WV+EPI R+ EAVRLR+RQR+RWR 
Sbjct: 1   MGEENSDAMNLDLNLSPGPEPAT----NEAMNLDAWVEEPIHRISEAVRLRARQRWRWRQ 56

Query: 60  --QVP-------IPPES----------------RNLPMELDQLLSHSANGSTLQTGEGSV 94
              +P       IPPE+                 N+ MEL+  L +S +G  LQTGEGSV
Sbjct: 57  HLHIPPPEVHFHIPPEAVHVHLPIPHLPIPPEAHNISMELNNFLVNSGHGGALQTGEGSV 116

Query: 95  AAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCG 154
           AAE R  EVPK CEN  G   DE S+KKDD E+GSGNDG FFDCNICLDL+R+PVVTCCG
Sbjct: 117 AAEGRLEEVPKACENINGVSVDETSQKKDDVERGSGNDGDFFDCNICLDLAREPVVTCCG 176

Query: 155 HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQG 214
           HLFCW C+YRWLH+HSDAKECPVCKGEVT+K++TPIYGRGN+ R  EEDS+LKIP  PQ 
Sbjct: 177 HLFCWTCVYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNGRSSEEDSTLKIPPGPQA 236

Query: 215 RRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRIL 274
           RR+ESLRQTIQR A++ PVEEMIRRLGSR DL RDL    +  +ARE  ER  SL++R L
Sbjct: 237 RRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPNEPDNAREQAERTTSLLSRFL 296

Query: 275 TSRGIRGEQNTVSAPPDDVDV-----QSGSNAE-GEARFLHSLLMRRQAQAHRAPTFSSS 328
           TSRG+R EQN V+  P D  V       G+ AE G+   + SLL+RR  Q+HRA    ++
Sbjct: 297 TSRGMRREQNPVAPQPQDDVVGLPQNNVGNAAEVGDNHRVQSLLLRR-TQSHRATL--TT 353

Query: 329 FSSTLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSM 388
            SS L SAER+ E Y R+ P  RNQEQP PPV+DRDSFSSI AVINSESQ+DTA EIDSM
Sbjct: 354 LSSALTSAERLFEAYLRSNPLNRNQEQP-PPVEDRDSFSSIGAVINSESQVDTAAEIDSM 412

Query: 389 VSLSTSSSRRRSDSSRVSDVDSGDSRAPRRRRLN 422
           VSLSTSSSRRR+D+SRVSDVDSGDSR PRRRRLN
Sbjct: 413 VSLSTSSSRRRNDASRVSDVDSGDSRPPRRRRLN 446

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530668|ref|XP_004172316.1| PREDICTED: uncharacterized protein LOC101228173 [Cucumis sativus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/429 (63%), Positives = 326/429 (75%), Gaps = 14/429 (3%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQ 60
           MG+E  D MNLDLNLGP PE  S S+P E VNL D  +EP+ R  E +R R+RQR+R RQ
Sbjct: 1   MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGETIRFRTRQRWRRRQ 60

Query: 61  VPIPPESRNLPMELDQLLSHSANGSTLQT---GEGSVAAEERANEVPKTCENNTGFLEDE 117
           V IPPE++N+ MEL +++ +S NG++LQ    GEGS+ AEER NE  KTCE N   LED 
Sbjct: 61  VQIPPETQNITMELSEIIVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDG 120

Query: 118 VSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPV 177
            +E K D EKGS +DGSFFDCNICLDLSRDPVVTCCGHL+CWPCLYRWLH+HSDAKECPV
Sbjct: 121 KTENKSDVEKGSDSDGSFFDCNICLDLSRDPVVTCCGHLYCWPCLYRWLHLHSDAKECPV 180

Query: 178 CKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMI 237
           CKGEVT KN+TPIYGRG++T   EED++LKIP RP  R++ESLRQTIQRT +SFPVE+MI
Sbjct: 181 CKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPPRPHARKVESLRQTIQRTPFSFPVEDMI 240

Query: 238 RRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDV---- 293
           RRLG+RFD  RDL    +  S+ ET  R+ +L+NRILTSRGIR E+  +S P DDV    
Sbjct: 241 RRLGNRFDFNRDLDQPPEPDSSNETFGRSPTLLNRILTSRGIRRER--ISLPHDDVGDLA 298

Query: 294 DVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLE-FYFRNLPERRN 352
                S   GE R L SL + R +  HR  T  SS +S  NSA+R+ + F + +    R+
Sbjct: 299 HTDVSSIEAGETR-LQSLPVLR-SLLHR--TRVSSLTSAFNSADRLPDGFLYTDPLIPRS 354

Query: 353 QEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGD 412
           QEQP PPV+DRDSFSSIAAVINSESQMDTAVEIDSMVS+STSSSRRR+D+ +VSDVDSG+
Sbjct: 355 QEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGN 414

Query: 413 SRAPRRRRL 421
           SRAPRRRRL
Sbjct: 415 SRAPRRRRL 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437567|ref|XP_004136563.1| PREDICTED: uncharacterized protein LOC101220497 [Cucumis sativus]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/429 (63%), Positives = 325/429 (75%), Gaps = 14/429 (3%)

Query: 1   MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQ 60
           MG+E  D MNLDLNLGP PE  S S+P E VNL D  +E + R  E +R R+RQR+R RQ
Sbjct: 1   MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEESVHRFGETIRFRTRQRWRRRQ 60

Query: 61  VPIPPESRNLPMELDQLLSHSANGSTLQT---GEGSVAAEERANEVPKTCENNTGFLEDE 117
           V IPPE++N+ MEL +++ +S NG++LQ    GEGS+ AEER NE  KTCE N   LED 
Sbjct: 61  VQIPPETQNITMELSEIIVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDG 120

Query: 118 VSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPV 177
            +E K D EKGS +DGSFFDCNICLDLSRDPVVTCCGHL+CWPCLYRWLH+HSDAKECPV
Sbjct: 121 KTENKSDVEKGSDSDGSFFDCNICLDLSRDPVVTCCGHLYCWPCLYRWLHLHSDAKECPV 180

Query: 178 CKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEEMI 237
           CKGEVT KN+TPIYGRG++T   EED++LKIP RP  R++ESLRQTIQRT +SFPVE+MI
Sbjct: 181 CKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPPRPHARKVESLRQTIQRTPFSFPVEDMI 240

Query: 238 RRLGSRFDLARDLTPLRDGSSARETGERANSLINRILTSRGIRGEQNTVSAPPDDV---- 293
           RRLG+RFD  RDL    +  S+ ET  R+ +L+NRILTSRGIR E+  +S P DDV    
Sbjct: 241 RRLGNRFDFNRDLDQPPEPDSSNETFGRSPTLLNRILTSRGIRRER--ISLPHDDVGDLA 298

Query: 294 DVQSGSNAEGEARFLHSLLMRRQAQAHRAPTFSSSFSSTLNSAERVLE-FYFRNLPERRN 352
                S   GE R L SL + R +  HR  T  SS +S  NSA+R+ + F + +    R+
Sbjct: 299 HTDVSSIEAGETR-LQSLPVLR-SLLHR--TRVSSLTSAFNSADRLPDGFLYTDPLIPRS 354

Query: 353 QEQPSPPVDDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRSDSSRVSDVDSGD 412
           QEQP PPV+DRDSFSSIAAVINSESQMDTAVEIDSMVS+STSSSRRR+D+ +VSDVDSG+
Sbjct: 355 QEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGN 414

Query: 413 SRAPRRRRL 421
           SRAPRRRRL
Sbjct: 415 SRAPRRRRL 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:2095833	436	AT3G58030 [Arabidopsis thalian	0.971	0.940	0.497	1.5e-99
TAIR|locus:2064584	425	AT2G42030 [Arabidopsis thalian	0.954	0.948	0.413	3.1e-67
TAIR|locus:2050533	413	AT2G44410 [Arabidopsis thalian	0.507	0.518	0.311	3.2e-28
TAIR|locus:2016437	226	AT1G19310 [Arabidopsis thalian	0.199	0.371	0.569	6.4e-28
TAIR|locus:2049023	227	AT2G23780 [Arabidopsis thalian	0.225	0.418	0.525	6.6e-26
TAIR|locus:2037294	137	AT1G74990 [Arabidopsis thalian	0.215	0.664	0.483	1.2e-24
FB|FBgn0052581	283	CG32581 [Drosophila melanogast	0.189	0.282	0.530	6.2e-24
UNIPROTKB|F1N0B8	180	RNF5 "Uncharacterized protein"	0.184	0.433	0.518	1e-22
MGI|MGI:1860076	180	Rnf5 "ring finger protein 5" [	0.184	0.433	0.518	1.6e-22
RGD|1588458	180	Rnf5 "ring finger protein 5, E	0.184	0.433	0.518	1.6e-22

TAIR|locus:2095833 AT3G58030 [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 221/444 (49%), Positives = 271/444 (61%)

Query:     1 MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVXXXXXXXXXXXQ 60
             MGEE +DTMNLDLNLGPGPE+     P E VNL DW ++P +R  EAV           +
Sbjct:     1 MGEELADTMNLDLNLGPGPESDLQPAPNETVNLADWTNDPPERSSEAVTRIRTRHRTRFR 60

Query:    61 ---VPIP--PESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLX 115
                +PIP   E+  + +EL+QL+ +S N + +QTGEGS    ER NE  K CEN  G L 
Sbjct:    61 QLNLPIPVLSETHTMAIELNQLMGNSVNRAAMQTGEGS----ERGNEDLKMCENGDGALG 116

Query:   116 XXXXXXXXXXXXXXXXXXXFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKEC 175
                                FFDCNICLDLS++PV+TCCGHL+CWPCLY+WL + SDAKEC
Sbjct:   117 DGVLDKKADVEKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQI-SDAKEC 175

Query:   176 PVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEE 235
             PVCKGEVT K +TPIYGRGN  RE EE    K+P+RP  RRIESLR TIQR+ ++ P+EE
Sbjct:   176 PVCKGEVTSKTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEE 235

Query:   236 MIRRLGSRFDLARDLTPLRDGSSARETGER----ANSLINRILTSRGIRGEQNTVSAPP- 290
             MIRR+ +RFD  RD TP+ D S+ RE  ER    ANS++NR++TSRG+R EQN  SA   
Sbjct:   236 MIRRIQNRFD--RDSTPVPDFSN-REASERVNDRANSILNRLMTSRGVRSEQNQASAAAA 292

Query:   291 ------DDVDVQSG--SNAEGEA--RFLHSLLMRRQAQAHRAPXXXXXXXXXLNSAERVL 340
                   +D+D+      + EGE+  RF H LL+RRQ Q+HR           L+SAER++
Sbjct:   293 AIVAASEDIDLNPNIAPDLEGESNTRF-HPLLIRRQLQSHRV-ARISTFTSALSSAERLV 350

Query:   341 EFYFRNLPERRN-QEQP--SPPV-DDRDSFSSIAAVINSESQMDTAVEIXXXXXXXXXXX 396
             + YFR  P  RN QEQ   +P V DDRDSFSSIAAVINSESQ+DTAVEI           
Sbjct:   351 DAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSR 410

Query:   397 XXXXXXXXXXXXXXXXXXAPRRRR 420
                                PRRRR
Sbjct:   411 RRNENGSRVSDVDSADSRPPRRRR 434

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2064584 AT2G42030 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 181/438 (41%), Positives = 220/438 (50%)

Query:     1 MGEETSDTMNLDLNLGPGPEAQSGSIPTEVVNLDDWVD----EPIDRLREAVXXXXXXXX 56
             MGEE S T+NLDLNLGP PE   G  P       DW +       + LR           
Sbjct:     1 MGEEISSTVNLDLNLGPDPEL--GLEPATNYARSDWGNGLAARESESLRRFRSRYRSRFR 58

Query:    57 XXXQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLXX 116
                 +P+  E+ +  MEL QLL  S N   L  GEGS+A+ ER  E  K CEN +  +  
Sbjct:    59 RIDMLPVLAETHSPAMELSQLLITSGNVVALPAGEGSMASGERVIEDSKKCENGSKVMAE 118

Query:   117 XXXXXXXXXXXXXXXXX-XFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKEC 175
                                FFDC ICLDLS+DPVVT CGHL+CW CLY+WL V S+AKEC
Sbjct:   119 DNVTEEKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQV-SEAKEC 177

Query:   176 PVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRTAYSFPVEE 235
             PVCKGEV+VK +TPIYGRG   RE EE S+ KIP RPQ RR ESLR T+ R+ +  P E 
Sbjct:   178 PVCKGEVSVKTVTPIYGRGIQKRESEEVSNTKIPSRPQARRTESLRTTLNRSGH-IPTE- 235

Query:   236 MIRRLGSRFDLARDLTPLRDGSSARETGER-ANSLINRILTSRGIRGEQNTVS---APP- 290
             + R L  R +        R+ S    TGER A   +NR +TSRG+R E+N  S     P 
Sbjct:   236 IFRHLQDRLE--------RESS----TGERRARPSLNRFMTSRGVRAEENQSSEALVEPS 283

Query:   291 ----DDVDVQSGSNAEGEARFLHSLLMRRQAQAHR-APXXXXXXXXXLNSAERVLEFYFR 345
                 +D+D+   +  E E    +    R  A   R A          L+SAER+ + Y  
Sbjct:   284 SDEINDIDLILNNAPENEEENENLSSSRALATQRRWAQMYGRVSSFTLSSAERLADTYLI 343

Query:   346 NLPERRNQEQ-PSPPV--DDRDSFSSIAAVINSESQMDTAVEIXXXXXXXXXXXXXXXXX 402
                  RNQEQ  SPPV  +DRDSFSSI  VINSESQ++TA EI                 
Sbjct:   344 THALGRNQEQNSSPPVGVEDRDSFSSIVGVINSESQVETAAEINSMLTVSTSSSVRRHEN 403

Query:   403 XXXXXXXXXXXXAPRRRR 420
                          P RRR
Sbjct:   404 SSRVSDVDSADSRPLRRR 421

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2050533 AT2G44410 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 73/234 (31%), Positives = 113/234 (48%)

Query:     7 DTMNLDLNLGPGPEAQS-GSIPTEVVNLDDWVDEPIDRLREAVXXXXXXXXXXXQVPIPP 65
             +TM+LDLN  P  +++S G + T +  + + ++   +R++E +           +  I  
Sbjct:     8 ETMDLDLNQEPSSDSESPGGLMTALSPMLEELESAQERIQERIRQLEVIVSRIREREIT- 66

Query:    66 ESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLXXXXXXXXXXX 125
              +   P     L+S + +    +     V  E     + +  EN T  +           
Sbjct:    67 -TTTTPA----LVSPNEH----RDSTAGVIHERSRERLVENGENKTYLIAKALNMEKTSS 117

Query:   126 XXXXXXXXXFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
                      FFDCNICL+ + DP++TCCGHLFCW C Y+   ++ + KECPVC GEVT  
Sbjct:   118 VPGG-----FFDCNICLEKAEDPILTCCGHLFCWGCFYQLPLIYLNIKECPVCDGEVTDA 172

Query:   186 NITPIYGRGNS---TREPEEDSSLKIPLRPQGRRIESLRQTI-QRTAYSFPVEE 235
              + PIYG G+    T+   ED  + +P RP  +R+ES+RQ I  R    FP  E
Sbjct:   173 EVIPIYGNGDDCDGTKPKLEDCGISLPPRPNAKRVESVRQKIINRGNPFFPGHE 226

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2016437 AT1G19310 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 49/86 (56%), Positives = 66/86 (76%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F+CNICLDL++DP+VT CGHLFCWPCLY+WLH+HS +K+CPVCK  +    + P+YGRG 
Sbjct:    21 FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCKAVIEEDRLVPLYGRGK 80

Query:   196 STREPEEDS--SLKIPLRPQGRRIES 219
             S+ +P   S   L++P RP G+R E+
Sbjct:    81 SSADPRSKSIPGLEVPNRPSGQRPET 106

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2049023 AT2G23780 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 51/97 (52%), Positives = 65/97 (67%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F+CNIC +L++DP+VT CGHLFCWPCLYRWLH HS ++ECPVCK  V    + P+YGRG 
Sbjct:    26 FECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKAVVQDDKLVPLYGRGK 85

Query:   196 STREPEEDS--SLKIPLRPQGRRIESLRQTIQRTAYS 230
             +  +P       L+IP RP G+R E+     Q  A S
Sbjct:    86 NQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAAS 122

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2037294 AT1G74990 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 45/93 (48%), Positives = 62/93 (66%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F CNICL+L+R+P+VT CGHLFCWPCLY+WLH HS +  CPVCK  V    + P+YG G 
Sbjct:    17 FGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDTLVPLYGMGK 76

Query:   196 STREPEE--DSSLKIPLRPQGRRIESLRQTIQR 226
              + +P    +S + +P RP   R E+ R  +++
Sbjct:    77 PSSDPRSKLNSGVTVPNRPAATRTETARPRLEQ 109

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

FB|FBgn0052581 CG32581 [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 44/83 (53%), Positives = 57/83 (68%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             ++CNICLD ++D VV+ CGHLFCWPCL++WL    + K CPVCK  V    + P+YGR N
Sbjct:   123 YECNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKAAVDKDKVIPLYGR-N 181

Query:   196 STREPEEDSSLKIPLRPQGRRIE 218
             ST +  ED   K+P RP G+R E
Sbjct:   182 STHQ--EDPRNKVPPRPAGQRTE 202

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N0B8 RNF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 42/81 (51%), Positives = 62/81 (76%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    + +ECPVCK  ++ +N+ P+YGRG+
Sbjct:    25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISRENVVPLYGRGS 84

Query:   196 STREPEEDSSLKIPLRPQGRR 216
               ++P+ D  LK P RPQG+R
Sbjct:    85 --QKPQ-DPRLKTPPRPQGQR 102

GO:0071712 "ER-associated misfolded protein catabolic process" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1860076 Rnf5 "ring finger protein 5" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+
Sbjct:    25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84

Query:   196 STREPEEDSSLKIPLRPQGRR 216
               ++P+ D  LK P RPQG+R
Sbjct:    85 --QKPQ-DPRLKTPPRPQGQR 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0044257 "cellular protein catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0071712 "ER-associated misfolded protein catabolic process" evidence=ISO

RGD|1588458 Rnf5 "ring finger protein 5, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query:   136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
             F+CNICL+ +R+ VV+ CGHL+CWPCL++WL    D +ECPVCK  ++ + + P+YGRG+
Sbjct:    25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRGS 84

Query:   196 STREPEEDSSLKIPLRPQGRR 216
               ++P+ D  LK P RPQG+R
Sbjct:    85 --QKPQ-DPRLKTPPRPQGQR 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0044257 "cellular protein catabolic process" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA;ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA;ISO

GO:0071712 "ER-associated misfolded protein catabolic process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	6e-24
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-14
smart00184	40	smart00184, RING, Ring finger	7e-13
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-12
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	7e-12
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	9e-08
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-06
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	3e-06
pfam11793	70	pfam11793, FANCL_C, FANCL C-terminal domain	2e-05
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	1e-04
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	3e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	4e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.002
smart00504	63	smart00504, Ubox, Modified RING finger domain	0.003
pfam05290	141	pfam05290, Baculo_IE-1, Baculovirus immediate-earl	0.004

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 97.8 bits (243), Expect = 6e-24
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 18/119 (15%)

Query: 121 KKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE------ 174
           +KD+D+    + G  FDCNICLD  RDPVVT CGHLFCWPC+++W +  +++++      
Sbjct: 4   EKDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYD 63

Query: 175 -------CPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQR 226
                  CPVCK +V+   + PIYGRG   + P+  S+  +P RP G  +  LR   QR
Sbjct: 64  HKREPPKCPVCKSDVSEATLVPIYGRGQ--KAPQSGSN--VPSRPSG-PVYDLRGVGQR 117

Length = 193

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 4/45 (8%)

Query: 136 FDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
            +C ICLDL RDPVV T CGH+FC  C+ R+L       +CP+C+
Sbjct: 3   LECPICLDLLRDPVVLTPCGHVFCRECILRYLKKK---SKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 138 CNICLD-LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
           C ICL+   +DPV+  CGH FC  C+ +WL   S    CP+C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWL--ESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 137 DCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
           +C ICL+  R+PVV   CGH+FC  C+ +WL        CP+C+  +
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK--NTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 136 FDCNICLD---LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
            +C ICLD      + VV  CGH+F   CL +WL   +    CP+C+  
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN---TCPLCRAP 46

Length = 46

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 47.9 bits (114), Expect = 9e-08
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 138 CNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVC 178
           C ICL+  +DPV    CGHLFC  C+  WL   S    CP+C
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWL--ESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 138 CNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183
           C ICL+  R+ V   CGHL  C  C  R        K+CP+C+  + 
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSK----KKCPICRQPIE 47

Length = 49

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 97  EERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHL 156
           E R   + +   N     +    E             + + C +CL+    P  T CGHL
Sbjct: 177 ESRLQPILQPSNNLHTLFQVITKENLSKKNGLPFIPLADYKCFLCLEEPEVPSCTPCGHL 236

Query: 157 FCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
           FC  CL            CP+C+ +V  K +
Sbjct: 237 FCLSCLLISWTKKKYEF-CPLCRAKVYPKKV 266

Length = 271

>gnl|CDD|204746 pfam11793, FANCL_C, FANCL C-terminal domain

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 137 DCNIC----LDLSRDPVVTC----CGHLFCWPCLYRWLHVHSDAK--------ECPVCKG 180
           +C IC    LD    P ++C    CG  F   CLY WL    D++         CP CK 
Sbjct: 4   ECGICYAYRLDGGEIPDISCDNPKCGLPFHIACLYEWLRTLRDSRQSFNVSFGTCPYCKA 63

Query: 181 EVTVK 185
           +++VK
Sbjct: 64  KISVK 68

This domain is found at the C-terminus of the Fancl protein in humans which is the putative E3 ubiquitin ligase subunit of the FA complex (Fanconi anaemia). Eight subunits of the Fanconi anaemia gene products form a multisubunit nuclear complex which is required for mono-ubiquitination of a downstream FA protein, FANCD2. Length = 70

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
           +   C+IC D    PV+T C H FC  C+ R L       +CP+C+ E
Sbjct: 25  TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP---KCPLCRAE 69

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 134 SFFDCNICLDL----SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPV 177
           S F C I  ++       PV+  CGH++    L +        K CP 
Sbjct: 9   SIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFK-CPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 153 CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
           C H F   C+ +WL   +    CP+C+      
Sbjct: 52  CKHNFHMHCILKWLATETSKGLCPMCRQTFVFA 84

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
           C IC      P  T CGH FC  C+ R L        CPVC+ +
Sbjct: 28  CRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF---CPVCRED 68

Length = 391

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           F C I L++ +DPV+   G  +    + +WL  H      PV    +T +++ P  
Sbjct: 2   FLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHG---TDPVTGQPLTHEDLIPNL 54

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|147470 pfam05290, Baculo_IE-1, Baculovirus immediate-early protein (IE-0)

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 136 FDCNICLDLSRDPVV----TCCGHLFCWPCLYRWLHVHSDA-KECPVCK 179
           + CNIC D S +        CCG+  C  C Y  L         CPVCK
Sbjct: 81  YQCNICQDTSAEEHFLKPNECCGYKICNLC-YANLWKFCTVYPVCPVCK 128

The Autographa californica multinucleocapsid nuclear polyhedrosis virus (AcMNPV) ie-1 gene product (IE-1) is thought to play a central role in stimulating early viral transcription. IE-1 has been demonstrated to activate several early viral gene promoters and to negatively regulate the promoters of two other AcMNPV regulatory genes, ie-0 and ie-2. It is thought that that IE-1 negatively regulates the expression of certain genes by binding directly, or as part of a complex, to promoter regions containing a specific IE-1-binding motif (5'-ACBYGTAA-3') near their mRNA start sites. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.75
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.56
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.26
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.24
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	99.22
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.2
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.01
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.99
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.98
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.97
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.94
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
PHA02929	238	N1R/p28-like protein; Provisional	98.9
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.86
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.84
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.74
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.73
PHA02926	242	zinc finger-like protein; Provisional	98.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.71
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.64
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.64
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.62
PF14634	44	zf-RING_5: zinc-RING finger domain	98.6
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.57
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.55
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.48
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.45
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.34
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.29
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.22
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.19
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.14
KOG1002	791	consensus Nucleotide excision repair protein RAD16	98.1
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.99
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
COG5152	259	Uncharacterized conserved protein, contains RING a	97.79
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.72
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.66
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.65
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.59
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.58
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.47
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.47
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.4
KOG2660	331	consensus Locus-specific chromosome binding protei	97.39
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.33
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.22
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.14
PF04641	260	Rtf2: Rtf2 RING-finger	97.13
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.12
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.1
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.08
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.04
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.02
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.91
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.77
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.63
KOG4739	233	consensus Uncharacterized protein involved in syna	96.59
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	96.56
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
KOG1001	674	consensus Helicase-like transcription factor HLTF/	96.1
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.85
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	95.75
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.62
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.53
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.51
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.24
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	95.21
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.08
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.06
KOG4445	368	consensus Uncharacterized conserved protein, conta	94.99
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.78
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.49
PHA03096	284	p28-like protein; Provisional	93.73
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.72
PHA02862	156	5L protein; Provisional	93.5
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.39
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	93.39
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.21
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	93.06
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	93.04
KOG3002	299	consensus Zn finger protein [General function pred	93.03
KOG3039	303	consensus Uncharacterized conserved protein [Funct	92.88
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	92.66
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.6
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.15
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.2
KOG3113	293	consensus Uncharacterized conserved protein [Funct	90.59
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.58
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	90.36
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	90.26
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	90.13
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.41
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	89.05
COG5109	396	Uncharacterized conserved protein, contains RING Z	88.93
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	88.75
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	88.59
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	88.25
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.03
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	87.98
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	87.36
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	87.18
KOG1940	276	consensus Zn-finger protein [General function pred	86.82
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.89
KOG3899	381	consensus Uncharacterized conserved protein [Funct	85.78

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.3e-18  Score=163.79  Aligned_cols=93  Identities=60%  Similarity=1.292  Sum_probs=81.0

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcccccCCC-CCC
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLK-IPL  210 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e~~~~~-~p~  210 (422)
                      +...|.|.||++..++||++.|||.|||.||++|+..+.+.+.||+|+..++.+.|+|+|+.+.....   +...+ +|+
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~---~~~~~~vP~  120 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPS---DPRKKDVPP  120 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCC---CcccccCCC
Confidence            56789999999999999999999999999999999998888899999999999999999999875433   22333 899


Q ss_pred             CCCCCchhhHHHHHhhh
Q 014562          211 RPQGRRIESLRQTIQRT  227 (422)
Q Consensus       211 ~p~~~r~e~lr~~l~r~  227 (422)
                      +|+++|.++.+......
T Consensus       121 RP~~~R~e~~~p~~~~~  137 (230)
T KOG0823|consen  121 RPAGQRYESKRPTPQNR  137 (230)
T ss_pred             CCCCccccccCCCCccc
Confidence            99999999887766544

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.56  E-value=6.2e-15  Score=136.74  Aligned_cols=83  Identities=51%  Similarity=1.150  Sum_probs=68.1

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhc-------------CCCCCCCCCCcccccCCceecccCCCCCC
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH-------------SDAKECPVCKGEVTVKNITPIYGRGNSTR  198 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~-------------~~~~~CPvCr~~l~~~~l~~~~~~~~~~~  198 (422)
                      ..+.+.|+||++.+.+|++++|||.||+.||..|+...             .....||+|+..++..++.|+|+.+....
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~~   94 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKAP   94 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCCC
Confidence            44678999999999999999999999999999998641             12468999999999999999999886432


Q ss_pred             CcccccCCCCCCCCCCCchh
Q 014562          199 EPEEDSSLKIPLRPQGRRIE  218 (422)
Q Consensus       199 ~~~e~~~~~~p~~p~~~r~e  218 (422)
                          .....+|++|.+.+.+
T Consensus        95 ----~~~~~iP~rp~~~~~~  110 (193)
T PLN03208         95 ----QSGSNVPSRPSGPVYD  110 (193)
T ss_pred             ----CCCCCCCcCCCCCccC
Confidence                3356688888886644

>smart00504 Ubox Modified RING finger domain

Probab=99.26  E-value=2e-12  Score=98.96  Aligned_cols=58  Identities=24%  Similarity=0.440  Sum_probs=51.9

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCC
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN  195 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~  195 (422)
                      ++.|+||.+.+.+|++++|||+||..||..|+..   ...||+|+.+++..+++++..+.+
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~~~l~~   58 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPNLALKS   58 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeCHHHHH
Confidence            3689999999999999999999999999999987   568999999999888888765544

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.24  E-value=4e-12  Score=90.67  Aligned_cols=41  Identities=51%  Similarity=1.064  Sum_probs=32.4

Q ss_pred             cccccCCCCCcEEccCCCccChhhHHHHHHhcCCC-CCCCCC
Q 014562          138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDA-KECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~-~~CPvC  178 (422)
                      |+||+++|.+|++++|||+||..||..|++..... ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999999874333 689988

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6.4e-12  Score=114.34  Aligned_cols=57  Identities=39%  Similarity=0.872  Sum_probs=50.8

Q ss_pred             CCccccccccCCCCC--cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          133 GSFFDCNICLDLSRD--PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~--pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      +..+.||||++.+.+  |+.+.|||+||..||+..++.   ...||+|++.++.+.++++|.
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHh---CCCCCCcccccchhhheeccC
Confidence            456899999999976  457999999999999999998   779999999999999998874

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=8.3e-12  Score=121.26  Aligned_cols=56  Identities=30%  Similarity=0.906  Sum_probs=50.3

Q ss_pred             CCCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          131 NDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       131 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      ..+....|.+|++...+|..+||||.|||.||..|+..   +..||+||.++...+++-
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e---k~eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE---KAECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc---ccCCCcccccCCCcceee
Confidence            34566899999999999999999999999999999998   678999999999887764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.01  E-value=1.5e-10  Score=80.95  Aligned_cols=38  Identities=58%  Similarity=1.270  Sum_probs=33.5

Q ss_pred             cccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          138 CNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      |+||++.+.+| +.++|||+||..|+.+|++.   ...||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK---NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence            89999999999 58999999999999999987   5799998

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.99  E-value=9.4e-11  Score=120.37  Aligned_cols=63  Identities=29%  Similarity=0.654  Sum_probs=54.2

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTR  198 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~  198 (422)
                      +..+.|+||++.|.+|++++|||.||..||..|+..   ...||+|+..+....+..++.+.+++.
T Consensus        24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~~~~Lr~N~~L~~iVe   86 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQESKLRSNWLVSEIVE   86 (397)
T ss_pred             ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---CCCCCCCCCccccccCccchHHHHHHH
Confidence            456899999999999999999999999999999987   458999999988777877776655544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.98  E-value=1.8e-10  Score=82.56  Aligned_cols=40  Identities=43%  Similarity=1.063  Sum_probs=34.5

Q ss_pred             ccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562          137 DCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK  179 (422)
Q Consensus       137 ~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr  179 (422)
                      .|+||++.+..   .+.++|||.||..||..|++.   +..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~---~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR---NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh---CCcCCccC
Confidence            69999999953   467899999999999999998   56999996

...

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.97  E-value=5.7e-11  Score=94.52  Aligned_cols=64  Identities=25%  Similarity=0.452  Sum_probs=50.4

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCC
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTRE  199 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~  199 (422)
                      +.|.|+||.+++.+||+++|||+|+..||..|+..  +...||+|+.++...++.++..+...+..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~   66 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ--NGGTDPFTRQPLSESDLIPNRALKSAIEE   66 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT--TSSB-TTT-SB-SGGGSEE-HHHHHHHHH
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc--CCCCCCCCCCcCCcccceECHHHHHHHHH
Confidence            46899999999999999999999999999999987  45689999999999999998766544433

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.94  E-value=4.7e-10  Score=82.57  Aligned_cols=46  Identities=41%  Similarity=0.933  Sum_probs=40.6

Q ss_pred             ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +..|.||++.+.+.++++|||. ||..|+..|++.   ...||+||+++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence            3589999999999999999999 999999999986   779999999875

...

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.3e-10  Score=115.46  Aligned_cols=61  Identities=33%  Similarity=0.898  Sum_probs=54.1

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCceecccCCC
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITPIYGRGN  195 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~~~~~~~  195 (422)
                      ...||||++...-|+.+.|||.||..||.++|..  ......||+|+..+..++|.++++...
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~  248 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD  248 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence            5799999999999999999999999999998876  233578999999999999999988655

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.90  E-value=9.6e-10  Score=106.00  Aligned_cols=47  Identities=30%  Similarity=0.863  Sum_probs=40.4

Q ss_pred             CccccccccCCCCCc--------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDP--------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p--------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ....|+||++.+.++        ++++|||.||..||.+|+..   ..+||+||.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEee
Confidence            346999999987653        56799999999999999987   679999999876

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.86  E-value=1.6e-09  Score=76.21  Aligned_cols=40  Identities=50%  Similarity=1.227  Sum_probs=36.8

Q ss_pred             cccccCCCCCcE-EccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          138 CNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      |+||++.+.+++ +++|||.||..||..|+.. .....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence            899999999999 8999999999999999996 457789998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.84  E-value=2.9e-10  Score=112.35  Aligned_cols=62  Identities=26%  Similarity=0.612  Sum_probs=54.4

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNST  197 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~  197 (422)
                      ++-+.|-||.++|..|+++||||+||.-||..+|..   +..||.|..++....+..++.+..++
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~---~p~CP~C~~~~~Es~Lr~n~il~Eiv   82 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY---KPQCPTCCVTVTESDLRNNRILDEIV   82 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc---CCCCCceecccchhhhhhhhHHHHHH
Confidence            356899999999999999999999999999999998   67899999999988888777655443

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.74  E-value=5.3e-09  Score=74.94  Aligned_cols=38  Identities=37%  Similarity=0.902  Sum_probs=23.8

Q ss_pred             cccccCCCCC----cEEccCCCccChhhHHHHHHhc-CCCCCCC
Q 014562          138 CNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVH-SDAKECP  176 (422)
Q Consensus       138 C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~-~~~~~CP  176 (422)
                      |+||.+ |.+    |++++|||+||..||.++++.. ....+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    8999999999999999999873 2466787

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.73  E-value=1.1e-08  Score=71.66  Aligned_cols=44  Identities=43%  Similarity=1.207  Sum_probs=37.0

Q ss_pred             ccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          137 DCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       137 ~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      .|+||++.+.+++.+ +|||.||..|+..|+..  ....||+|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence            499999999777655 59999999999999986  356799998753

>PHA02926 zinc finger-like protein; Provisional

Probab=98.72  E-value=7.4e-09  Score=97.73  Aligned_cols=52  Identities=23%  Similarity=0.786  Sum_probs=40.9

Q ss_pred             CccccccccCCCCC---------cEEccCCCccChhhHHHHHHhc---CCCCCCCCCCcccccC
Q 014562          134 SFFDCNICLDLSRD---------PVVTCCGHLFCWPCLYRWLHVH---SDAKECPVCKGEVTVK  185 (422)
Q Consensus       134 ~~~~C~ICl~~~~~---------pv~l~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l~~~  185 (422)
                      .+..|+||++...+         +++.+|+|.||..||..|....   +....||+||..+..-
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI  232 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence            45699999998633         4577999999999999999862   2245799999987643

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.71  E-value=4e-09  Score=102.49  Aligned_cols=57  Identities=33%  Similarity=0.666  Sum_probs=49.0

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      ..+.|-||-+.|..|+.++|||+||+-||..+|..   ...||+|+.+....-+...++.
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~---qp~CP~Cr~~~~esrlr~~s~~   80 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT---QPFCPVCREDPCESRLRGSSGS   80 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcC---CCCCccccccHHhhhcccchhH
Confidence            45799999999999999999999999999999988   6689999998766655554443

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.2e-08  Score=98.47  Aligned_cols=53  Identities=36%  Similarity=0.872  Sum_probs=45.8

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHH-HHHhcCCCCCCCCCCcccccCCc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYR-WLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~-wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      ...+.|.||++....|..++|||+||+.||.. |-+.  ....||+||+....+.+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--KYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhh--ccccCchhhhhccchhh
Confidence            34679999999999999999999999999999 8776  23459999998887765

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=7.7e-09  Score=111.91  Aligned_cols=57  Identities=26%  Similarity=0.713  Sum_probs=51.8

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ..+.|++|..-+++.+++.|||+||..|+...+..  ....||.|.+.|...|++++|.
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et--RqRKCP~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET--RQRKCPKCNAAFGANDVHRIHL  698 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH--hcCCCCCCCCCCCcccccccCC
Confidence            35799999999999999999999999999998876  4678999999999999998873

>smart00184 RING Ring finger

Probab=98.62  E-value=3e-08  Score=66.98  Aligned_cols=39  Identities=49%  Similarity=1.302  Sum_probs=35.0

Q ss_pred             cccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      |+||++....++.++|||.||..|+..|+..  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS--GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHh--CcCCCCCC
Confidence            8999999999999999999999999999983  35679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.60  E-value=2.4e-08  Score=71.71  Aligned_cols=41  Identities=41%  Similarity=1.097  Sum_probs=34.6

Q ss_pred             ccccccCCC---CCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562          137 DCNICLDLS---RDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG  180 (422)
Q Consensus       137 ~C~ICl~~~---~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~  180 (422)
                      .|+||++.+   ..+++++|||+||..|+..+..   ....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~---~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG---KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC---CCCCCcCCCC
Confidence            499999999   2467899999999999999883   3668999975

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.57  E-value=4.2e-08  Score=78.12  Aligned_cols=40  Identities=40%  Similarity=1.133  Sum_probs=33.3

Q ss_pred             ccccccCCCCCc-------------EEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562          137 DCNICLDLSRDP-------------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCK  179 (422)
Q Consensus       137 ~C~ICl~~~~~p-------------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr  179 (422)
                      .|+||++.+.++             +..+|||.||..||.+|++.   ...||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence            599999999432             34589999999999999998   66999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=4.3e-08  Score=98.86  Aligned_cols=47  Identities=32%  Similarity=0.717  Sum_probs=40.0

Q ss_pred             cccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          136 FDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       136 ~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ..|.||++.|...   .++||+|.||..||..|+..+  ...||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCCC
Confidence            5999999999886   478999999999999999982  3459999986543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.48  E-value=4.2e-08  Score=75.59  Aligned_cols=52  Identities=33%  Similarity=0.870  Sum_probs=27.9

Q ss_pred             ccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      .+.|++|.+.+.+|+. ..|.|.||+.||..-+..     .||+|..+....++.-|.
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-----~CPvC~~Paw~qD~~~Nr   59 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-----ECPVCHTPAWIQDIQINR   59 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-----B-SSS--B-S-SS----H
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-----CCCCcCChHHHHHHHhhh
Confidence            4799999999999984 699999999999875554     699999998888876554

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=5e-08  Score=93.15  Aligned_cols=45  Identities=42%  Similarity=0.960  Sum_probs=40.5

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG  180 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~  180 (422)
                      .+++.|+||++.|.+|++++|||+||..|+..++.   ....||.|+.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE---GPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchHhHHHHHHhcC---CCcCCcccCC
Confidence            46789999999999999999999999999999887   3578999994

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3.1e-07  Score=94.74  Aligned_cols=125  Identities=27%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcccccCCCCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRP  212 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e~~~~~~p~~p  212 (422)
                      ..+|.|.||...+..|+.++|||+||..||.+-+..   ...||.|+..+..-.....+.               .    
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---~~~cp~Cr~~l~e~~~~~~~~---------------~----  139 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---ETECPLCRDELVELPALEQAL---------------S----  139 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---CCCCcccccccccchHHHHHH---------------H----
Confidence            467999999999999999999999999999997765   678999998876411000000               0    


Q ss_pred             CCCchhhHHHHHhhhccccc-------HHHHHHHhchhchh-cccccccCCCCchhhhhHhHHHHHHHHHHhhcc
Q 014562          213 QGRRIESLRQTIQRTAYSFP-------VEEMIRRLGSRFDL-ARDLTPLRDGSSARETGERANSLINRILTSRGI  279 (422)
Q Consensus       213 ~~~r~e~lr~~l~r~~~~~~-------iee~~~~l~~kld~-v~kl~~~~~~~~~~~~~~r~~~il~rfl~~r~~  279 (422)
                      -+.....+...+..+.+.+.       .++-.......-.| +....++..+.-++.++.+|..|..++++.+..
T Consensus       140 ~~r~~~~li~~F~~~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~  214 (398)
T KOG4159|consen  140 LNRLLCKLITKFLEGSSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDK  214 (398)
T ss_pred             HHHHHHHHHHHhhhhhhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcce
Confidence            01111111222222211110       01101111111114 678888999999999999999999999987443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.8e-07  Score=92.47  Aligned_cols=48  Identities=35%  Similarity=0.832  Sum_probs=40.6

Q ss_pred             CccccccccCCC-CC------------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLS-RD------------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~-~~------------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +...|.||++.+ ..            |..+||||.||..|++.|++.   ..+||+||.++..
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER---qQTCPICr~p~if  346 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER---QQTCPICRRPVIF  346 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh---ccCCCcccCcccc
Confidence            345999999984 33            367899999999999999998   7899999998653

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.8e-07  Score=89.50  Aligned_cols=46  Identities=30%  Similarity=0.749  Sum_probs=39.5

Q ss_pred             cccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          136 FDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       136 ~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ..|.||++.|...   +.+||.|.||..|+.+|+..  .+..||+||.++.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--y~~~CPvCrt~iP  372 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--YSNKCPVCRTAIP  372 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--hcccCCccCCCCC
Confidence            6999999999653   57899999999999999984  2558999999875

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.22  E-value=9.3e-07  Score=88.02  Aligned_cols=53  Identities=26%  Similarity=0.609  Sum_probs=40.8

Q ss_pred             cccccccCC-CCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562          136 FDCNICLDL-SRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI  190 (422)
Q Consensus       136 ~~C~ICl~~-~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~  190 (422)
                      ..||||... +..|.    +.+|||.||..|+..++..  +...||.|+..+...++.+.
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~--~~~~CP~C~~~lrk~~fr~q   61 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GSGSCPECDTPLRKNNFRVQ   61 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC--CCCCCCCCCCccchhhcccc
Confidence            589999985 44442    2379999999999997754  35689999999888776543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.19  E-value=1.1e-06  Score=71.65  Aligned_cols=49  Identities=29%  Similarity=0.687  Sum_probs=38.5

Q ss_pred             cccccccCCCCC------------cE-EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          136 FDCNICLDLSRD------------PV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       136 ~~C~ICl~~~~~------------pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ..|.||...|..            |+ .-.|+|.||..||.+|+..+.....||+||.++..
T Consensus        22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            377777777742            22 33799999999999999986557899999998754

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.4e-07  Score=95.18  Aligned_cols=50  Identities=30%  Similarity=0.648  Sum_probs=43.6

Q ss_pred             ccccccccCCCCC-----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          135 FFDCNICLDLSRD-----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       135 ~~~C~ICl~~~~~-----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      ...|+||++.+..     +..++|||.||..|+..|++.   ..+||+||..+....+
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTVLYDYVL  345 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHH---hCcCCcchhhhhcccc
Confidence            4599999999988     789999999999999999999   7799999996544443

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=98.10  E-value=2.7e-06  Score=88.67  Aligned_cols=137  Identities=18%  Similarity=0.365  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcchhhhh-----------------hhhccCCCCCccCCCcchHHHhhhhc
Q 014562           40 PIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQ-----------------LLSHSANGSTLQTGEGSVAAEERANE  102 (422)
Q Consensus        40 ~lrri~eav~~RrRqR~R~Rql~~~~~~~~~~~El~~-----------------l~~n~~~~~~l~~ge~~~~~~er~~e  102 (422)
                      -++-++.-+++|+..--|...+++|+...++..++-+                 |-+....+..+++...+.....|+.+
T Consensus       434 ~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ  513 (791)
T KOG1002|consen  434 NIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQ  513 (791)
T ss_pred             HHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHH
Confidence            3444555668888888899999999998877655411                 11122334445555555555556555


Q ss_pred             cccccccCCccchhhhcccccccccCCCCCCCccccccccCCCCCcEEccCCCccChhhHHHHHHh--cCCCCCCCCCCc
Q 014562          103 VPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV--HSDAKECPVCKG  180 (422)
Q Consensus       103 ~~k~~~~~~~~~~~~~~~~ke~v~~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~  180 (422)
                      +...        .+.+...+  .....+....+..|.+|-+...+++.+.|.|.||.-||..+...  .+...+||+|..
T Consensus       514 ~aDH--------P~LVl~S~--~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i  583 (791)
T KOG1002|consen  514 AADH--------PDLVLYSA--NANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI  583 (791)
T ss_pred             hccC--------cceeeehh--hcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence            4211        11111110  01111223356799999999999999999999999999998776  233579999998


Q ss_pred             ccccCC
Q 014562          181 EVTVKN  186 (422)
Q Consensus       181 ~l~~~~  186 (422)
                      .++...
T Consensus       584 ~LsiDl  589 (791)
T KOG1002|consen  584 GLSIDL  589 (791)
T ss_pred             cccccc
Confidence            887653

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=6.2e-07  Score=89.69  Aligned_cols=49  Identities=33%  Similarity=0.820  Sum_probs=42.0

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ..+.|+||+++++...++ .|+|.||..||...++.  +...||.||+.+..
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~--gn~ecptcRk~l~S   91 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS--GNNECPTCRKKLVS   91 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--cCCCCchHHhhccc
Confidence            457999999999988755 89999999999888876  56789999998753

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3.1e-06  Score=83.19  Aligned_cols=48  Identities=31%  Similarity=0.685  Sum_probs=42.1

Q ss_pred             cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562          136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK  185 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~  185 (422)
                      ..|+||+....-|+.++|+|.||+-||+-....  ++..|++||.++...
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n--dk~~CavCR~pids~   55 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKN--DKKTCAVCRFPIDST   55 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhc--CCCCCceecCCCCcc
Confidence            489999999999999999999999999976655  466799999998754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.79  E-value=8.2e-06  Score=75.90  Aligned_cols=46  Identities=41%  Similarity=0.757  Sum_probs=40.9

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      -.|.|.||...|..||++.|||.||..|...-++.   ...|-+|.+..
T Consensus       195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---g~~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---GDECGVCGKAT  240 (259)
T ss_pred             CceeehhchhhccchhhhhcchhHHHHHHHHHhcc---CCcceecchhh
Confidence            45899999999999999999999999999887776   66899998754

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.72  E-value=1.5e-05  Score=60.54  Aligned_cols=43  Identities=33%  Similarity=0.662  Sum_probs=31.0

Q ss_pred             CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCC
Q 014562          134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPV  177 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPv  177 (422)
                      ..+.|||.+..|.+|+. ..|||+|....|..|+.. .....||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR-NGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence            45799999999999986 599999999999999954 44778999

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.66  E-value=2.2e-05  Score=81.38  Aligned_cols=54  Identities=43%  Similarity=0.880  Sum_probs=47.6

Q ss_pred             CCccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          133 GSFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      ...+.|++|...+.+|+. +.|||.||..|+..|+..   +..||.|+..+......+
T Consensus        19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQAEELP   73 (391)
T ss_pred             cccccCccccccccCCCCCCCCCCcccccccchhhcc---CcCCcccccccchhhccC
Confidence            456899999999999998 599999999999999998   779999999887666554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.4e-05  Score=81.48  Aligned_cols=61  Identities=36%  Similarity=0.752  Sum_probs=52.1

Q ss_pred             ccccccccCCCCCc-----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCC
Q 014562          135 FFDCNICLDLSRDP-----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS  196 (422)
Q Consensus       135 ~~~C~ICl~~~~~p-----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~  196 (422)
                      ..+||||++.+.-+     +.+.|||.|-..||..|+.+ .....||.|..+-....+++.|.+..+
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-KTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-hhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            35999999999876     46899999999999999963 557789999999999999998876544

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=4.7e-05  Score=74.14  Aligned_cols=51  Identities=27%  Similarity=0.650  Sum_probs=41.5

Q ss_pred             CCCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          132 DGSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      .....+|++|.+....|.+. +|||.||+.||..-... ..+..||.|..+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~-~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW-DASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcc-hhhcccCccCCCCc
Confidence            44667999999999999765 69999999999986654 23679999987654

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=1.7e-05  Score=77.90  Aligned_cols=46  Identities=37%  Similarity=0.767  Sum_probs=40.2

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      .+.|-||...|..||++.|||.||..|...-+..   ...|++|.+.+.
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---GEKCYVCSQQTH  286 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhcccccc---CCcceecccccc
Confidence            3679999999999999999999999998877765   568999987654

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=1.6e-05  Score=77.06  Aligned_cols=57  Identities=26%  Similarity=0.500  Sum_probs=45.6

Q ss_pred             CccccccccCCCCCc----------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          134 SFFDCNICLDLSRDP----------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p----------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      +.-.|.||-..+...          ..++|+|+|+..||.-|.-. +.+.+||.|++.+..+.+..|.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekVdl~rmfsnp  289 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKVDLKRMFSNP  289 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHhhHhhhccCc
Confidence            445999999887543          36899999999999999876 5578999999988777665533

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.58  E-value=2.7e-05  Score=79.08  Aligned_cols=53  Identities=32%  Similarity=0.853  Sum_probs=45.3

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ..+-.|-||-+.-++-.+-||||..|..|+..|.... ....||.||..+....
T Consensus       367 sTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  367 STFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-EGQTCPFCRCEIKGTE  419 (563)
T ss_pred             chHHHHHHhhccCCCcccccccchHHHHHHHhhcccC-CCCCCCceeeEecccc
Confidence            3456899999999998899999999999999999763 3678999999987544

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=2.6e-05  Score=58.21  Aligned_cols=46  Identities=30%  Similarity=0.852  Sum_probs=39.6

Q ss_pred             cccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          136 FDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ..|.||++...+.|+--|||- .|+.|-.+.++.  .+..||+||+++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH
Confidence            589999999999999999997 699998887764  3668999999874

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=4.3e-05  Score=79.47  Aligned_cols=50  Identities=30%  Similarity=0.664  Sum_probs=39.5

Q ss_pred             CCCccccccccCCCCC-----------------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          132 DGSFFDCNICLDLSRD-----------------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~-----------------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ......|+||+..+.-                 -..+||.|.|+..|+.+|...  .+-.||+||.++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~--ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT--YKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh--hcccCCccCCCCC
Confidence            3456799999987631                 135799999999999999985  2458999999875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.47  E-value=3e-05  Score=79.89  Aligned_cols=45  Identities=29%  Similarity=0.792  Sum_probs=38.7

Q ss_pred             CccccccccCCCCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +-.+||||++.+...+    .+.|.|+|+..|+..|...     +||+||.-..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-----SCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-----cChhhhhhcC
Confidence            4569999999997654    5699999999999999987     8999998654

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=7.3e-05  Score=75.35  Aligned_cols=48  Identities=38%  Similarity=0.742  Sum_probs=40.9

Q ss_pred             CCccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +.-..|.||+....+-+++||.|. .|..|.+..--.   +..||+||.++.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---hcCCCccccchH
Confidence            345799999999999999999998 699999876644   558999999874

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.47  E-value=5.4e-05  Score=59.86  Aligned_cols=50  Identities=32%  Similarity=0.776  Sum_probs=25.7

Q ss_pred             ccccccccCCCC-C---cEE----ccCCCccChhhHHHHHHhcCC--------CCCCCCCCccccc
Q 014562          135 FFDCNICLDLSR-D---PVV----TCCGHLFCWPCLYRWLHVHSD--------AKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~-~---pv~----l~CGH~FC~~CI~~wl~~~~~--------~~~CPvCr~~l~~  184 (422)
                      +..|.||+..+. .   |..    ..|++.||..||..|+.....        ...||.|+.+++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            468999999865 2   221    379999999999999986211        1369999998764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.40  E-value=2.5e-05  Score=84.74  Aligned_cols=57  Identities=28%  Similarity=0.549  Sum_probs=46.0

Q ss_pred             CccccccccCCCCCcE---EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          134 SFFDCNICLDLSRDPV---VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv---~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      ..-.|++|+..+.+..   -.+|+|.||..||..|.+.   ..+||+|+..|....+...+..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~~v~V~eS~~~  181 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---AQTCPVDRGEFGEVKVLESTGI  181 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---cccCchhhhhhheeeeeccccc
Confidence            4568999999887753   4689999999999999998   7899999999876555544444

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.39  E-value=4.1e-05  Score=76.35  Aligned_cols=48  Identities=29%  Similarity=0.696  Sum_probs=42.1

Q ss_pred             CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ....|.+|..+|.++.+ +-|-|+||..||..++..   ...||.|...+..
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---SKYCPTCDIVIHK   62 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---hccCCccceeccC
Confidence            45699999999999974 689999999999999998   7899999876643

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.33  E-value=0.00019  Score=52.83  Aligned_cols=42  Identities=40%  Similarity=0.887  Sum_probs=33.4

Q ss_pred             ccccccC--CCCCcEEccCC-----CccChhhHHHHHHhcCCCCCCCCCC
Q 014562          137 DCNICLD--LSRDPVVTCCG-----HLFCWPCLYRWLHVHSDAKECPVCK  179 (422)
Q Consensus       137 ~C~ICl~--~~~~pv~l~CG-----H~FC~~CI~~wl~~~~~~~~CPvCr  179 (422)
                      .|-||++  ...++.+.||.     |.+|..|+.+|+.. +....||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~-~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE-SGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH-cCCCcCCCCC
Confidence            4899997  33456778985     88999999999987 3356899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00024  Score=68.35  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=49.3

Q ss_pred             CccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ..+.||||.+.+.+.    ++-+|||+||..|+.+.+..   -..||+|..++...+|+.+..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~---D~v~pv~d~plkdrdiI~Lqr  279 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK---DMVDPVTDKPLKDRDIIGLQR  279 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc---cccccCCCCcCcccceEeeec
Confidence            568999999999885    46699999999999999887   668999999999999988654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.14  E-value=0.00013  Score=80.75  Aligned_cols=48  Identities=35%  Similarity=0.929  Sum_probs=39.0

Q ss_pred             ccccccccCCCC--C---c--EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          135 FFDCNICLDLSR--D---P--VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       135 ~~~C~ICl~~~~--~---p--v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ...|+||+..+.  +   |  ....|.|.||..|+.+|++. ++...||+||..++
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S-s~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS-SARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh-cCCCCCCccccccc
Confidence            458999998875  1   2  23469999999999999998 66789999997765

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.13  E-value=0.00053  Score=67.37  Aligned_cols=57  Identities=25%  Similarity=0.421  Sum_probs=46.2

Q ss_pred             CCCccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          132 DGSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ....+.|||+...|..-    ++.+|||+|+..||...- .   ...||+|..++...+++++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~---~~~Cp~c~~~f~~~DiI~Lnp  170 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K---SKKCPVCGKPFTEEDIIPLNP  170 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c---cccccccCCccccCCEEEecC
Confidence            45678999999999543    356999999999999874 2   447999999999999887543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00022  Score=72.49  Aligned_cols=53  Identities=26%  Similarity=0.827  Sum_probs=38.5

Q ss_pred             cccccccCCCCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562          136 FDCNICLDLSRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       136 ~~C~ICl~~~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~  188 (422)
                      ..|.||.+.+-.-.    +-.|||+|+..|+.+|+........||+|+-.+....++
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~   61 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA   61 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence            48999966554321    335999999999999999855457999999554444333

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.00027  Score=71.05  Aligned_cols=50  Identities=30%  Similarity=0.550  Sum_probs=43.7

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +.++..||||+--...++..||+|.-|+.||.+.+.+   .+.|=.|+..+..
T Consensus       419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN---~k~CFfCktTv~~  468 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN---CKRCFFCKTTVID  468 (489)
T ss_pred             CcccccCcceecccchhhccCCCCchHHHHHHHHHhc---CCeeeEecceeee
Confidence            3456799999999999999999999999999999988   7789999887653

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.08  E-value=0.00023  Score=70.13  Aligned_cols=43  Identities=40%  Similarity=0.926  Sum_probs=37.6

Q ss_pred             cccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562          136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKG  180 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~  180 (422)
                      +.|+.|..++.+|+.+ .|||.||..||...|-.  ..+.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d--sDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD--SDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhh--ccccCCCccc
Confidence            8999999999999977 89999999999986654  2678999965

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.00031  Score=71.45  Aligned_cols=50  Identities=28%  Similarity=0.808  Sum_probs=39.8

Q ss_pred             CccccccccCCCCCcE--------EccCCCccChhhHHHHHHhcCC----CCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDPV--------VTCCGHLFCWPCLYRWLHVHSD----AKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv--------~l~CGH~FC~~CI~~wl~~~~~----~~~CPvCr~~l~  183 (422)
                      .+..|.||++...+..        +.+|-|.||..||..|-.....    .+.||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4569999999987765        3679999999999999855111    478999998654

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.02  E-value=0.00039  Score=55.86  Aligned_cols=30  Identities=33%  Similarity=0.851  Sum_probs=26.9

Q ss_pred             cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          152 CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       152 ~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .|.|.|+..||.+||..   ...||+|++++..
T Consensus        53 ~CnHaFH~HCI~rWL~T---k~~CPld~q~w~~   82 (88)
T COG5194          53 VCNHAFHDHCIYRWLDT---KGVCPLDRQTWVL   82 (88)
T ss_pred             ecchHHHHHHHHHHHhh---CCCCCCCCceeEE
Confidence            69999999999999998   6799999987654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.91  E-value=0.00045  Score=51.84  Aligned_cols=47  Identities=26%  Similarity=0.509  Sum_probs=38.3

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ...|-.|...-...++++|||..|..|..-+-     ...||+|.+++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r-----YngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER-----YNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChhh-----ccCCCCCCCcccCCC
Confidence            45788888888888999999999999976544     348999999987654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00057  Score=68.25  Aligned_cols=56  Identities=25%  Similarity=0.693  Sum_probs=46.7

Q ss_pred             CCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          133 GSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      .+.-.||||+....+|..+ --|-+||+.|+..++.+   ...||+-..+....+++.+|
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchHHHHHHHh
Confidence            3556999999999998655 56999999999999998   66899999988777666554

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.00089  Score=65.92  Aligned_cols=42  Identities=40%  Similarity=0.871  Sum_probs=35.5

Q ss_pred             ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ...|.||++...+-+.++|||. -|..|-++       ...||+||+.+.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-------m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-------MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccc-------cccCchHHHHHH
Confidence            5699999999999999999996 59999543       447999998764

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.59  E-value=0.0006  Score=65.61  Aligned_cols=51  Identities=35%  Similarity=0.912  Sum_probs=36.7

Q ss_pred             ccccccccCCCC-Cc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562          135 FFDCNICLDLSR-DP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI  190 (422)
Q Consensus       135 ~~~C~ICl~~~~-~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~  190 (422)
                      ...|..|.-... ++ .+|.|+|+||..|...-.     ...||+|++++....+..+
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-----~~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-----PDVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCC-----ccccccccceeeeeecccc
Confidence            357888876554 33 478999999999976422     2389999999776665554

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.00073  Score=53.90  Aligned_cols=48  Identities=29%  Similarity=0.747  Sum_probs=37.8

Q ss_pred             ccccccCCCCC------------cEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          137 DCNICLDLSRD------------PVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       137 ~C~ICl~~~~~------------pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .|-||.-.|..            |.+. -|.|.|+..||.+|+........||+||..+..
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            77777777743            2222 699999999999999987767899999987654

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0018  Score=65.56  Aligned_cols=44  Identities=34%  Similarity=0.803  Sum_probs=35.4

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ....|.||++...+.+.+||||..|  |..-..+    ...||+||..+.
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence            4569999999999999999999977  7664443    345999998764

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=96.10  E-value=0.0014  Score=72.46  Aligned_cols=52  Identities=33%  Similarity=0.756  Sum_probs=43.5

Q ss_pred             cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      +.|.||.+ ...++++.|||.||..|+...+.. .....||.|+..+....++.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~-~~~~~~~~cr~~l~~~~l~s  506 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQ-SENAPCPLCRNVLKEKKLLS  506 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhcccc-ccCCCCcHHHHHHHHHHHhh
Confidence            79999999 888899999999999999988776 33447999999887666554

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.85  E-value=0.0033  Score=64.88  Aligned_cols=35  Identities=26%  Similarity=0.678  Sum_probs=31.6

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHH
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLH  167 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~  167 (422)
                      ++++.|+||...|.+|++++|||..|..|....+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            46789999999999999999999999999886654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.0051  Score=51.87  Aligned_cols=28  Identities=36%  Similarity=0.922  Sum_probs=25.4

Q ss_pred             cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          152 CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       152 ~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      .|.|.|+..||.+|++.   ...||+|.++-
T Consensus        80 ~CNHaFH~hCisrWlkt---r~vCPLdn~eW  107 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT---RNVCPLDNKEW  107 (114)
T ss_pred             ecchHHHHHHHHHHHhh---cCcCCCcCcce
Confidence            69999999999999999   77999998764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0061  Score=62.73  Aligned_cols=48  Identities=31%  Similarity=0.746  Sum_probs=36.4

Q ss_pred             CccccccccCCCCCc---EEccCCCccChhhHHHHHHhc--C---CCCCCCCCCcc
Q 014562          134 SFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVH--S---DAKECPVCKGE  181 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~--~---~~~~CPvCr~~  181 (422)
                      ..+.|.||++...-.   +.+||+|+||..|+..++..+  .   ....||-|+..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            457999999988653   468999999999999988762  1   23468776543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.53  E-value=0.0096  Score=60.02  Aligned_cols=47  Identities=34%  Similarity=0.796  Sum_probs=39.7

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHH--HHhcCCCCCCCCCCcc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRW--LHVHSDAKECPVCKGE  181 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~w--l~~~~~~~~CPvCr~~  181 (422)
                      +++...|.||..-+.-..++||+|..|.-|..+.  |..   .+.||+||..
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~---~K~C~~CrTE  106 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM---QKGCPLCRTE  106 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh---ccCCCccccc
Confidence            5567899999999988889999999999998763  333   6689999986

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.008  Score=59.73  Aligned_cols=46  Identities=33%  Similarity=0.745  Sum_probs=38.3

Q ss_pred             ccccccccCCCCC------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          135 FFDCNICLDLSRD------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       135 ~~~C~ICl~~~~~------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      .+.|-||-+.|..      |..+.|||+||..|+...+..  ....||.||.+.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~--~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN--SRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC--ceeeccCCCCcc
Confidence            4689999999854      567889999999999987765  466899999983

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.24  E-value=0.014  Score=51.55  Aligned_cols=53  Identities=28%  Similarity=0.701  Sum_probs=43.5

Q ss_pred             CccccccccCCCCCcEEc----cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          134 SFFDCNICLDLSRDPVVT----CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l----~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ....|.||.+...+...+    .||-..|..|....|+.-.-...||+|+..+....
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            346999999999887644    59999999999998877555789999999887543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.005  Score=66.24  Aligned_cols=42  Identities=36%  Similarity=0.836  Sum_probs=34.2

Q ss_pred             CccccccccCCCC----CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562          134 SFFDCNICLDLSR----DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE  181 (422)
Q Consensus       134 ~~~~C~ICl~~~~----~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~  181 (422)
                      +.+.|+||+..|.    .|+.+-|||+.|..|+......     .|| |+..
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-----scp-~~~D   55 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-----SCP-TKRD   55 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-----cCC-CCcc
Confidence            4578999988874    5889999999999999987766     788 6543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.08  E-value=0.0073  Score=61.73  Aligned_cols=48  Identities=23%  Similarity=0.522  Sum_probs=38.8

Q ss_pred             CccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      -.+.|..|-+.+-..    -.+||.|.||..|+..++.+ ....+||.|++-.
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~-n~~rsCP~Crklr  415 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN-NGTRSCPNCRKLR  415 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh-CCCCCCccHHHHH
Confidence            357999999988432    25899999999999999976 4578999999543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.015  Score=59.80  Aligned_cols=56  Identities=27%  Similarity=0.506  Sum_probs=42.5

Q ss_pred             CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562          133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~  188 (422)
                      ...|.|||=.+--.+   |+.+.|||+.|..-+.+..+....+.+||.|-......+..
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~k  390 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTK  390 (394)
T ss_pred             cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcc
Confidence            356899997665543   68999999999999999887744458999997665544443

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=94.99  E-value=0.0073  Score=59.84  Aligned_cols=53  Identities=32%  Similarity=0.683  Sum_probs=40.0

Q ss_pred             CCCccccccccCCCCCc---EEccCCCccChhhHHHHHHh-----------------c---CCCCCCCCCCccccc
Q 014562          132 DGSFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHV-----------------H---SDAKECPVCKGEVTV  184 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~-----------------~---~~~~~CPvCr~~l~~  184 (422)
                      ......|.||+.-|.+.   +.++|-|.|+..|+.++|..                 |   .-...||+|+..|..
T Consensus       112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            33456999999888653   46899999999999988764                 0   112469999998764

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.019  Score=56.71  Aligned_cols=49  Identities=27%  Similarity=0.640  Sum_probs=37.3

Q ss_pred             ccccccCC-CCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          137 DCNICLDL-SRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       137 ~C~ICl~~-~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      .||+|... |..|-    +-+|||..|..|+...+..  +...||.|...+-..++
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~--g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL--GPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc--CCCCCCcccchhhhccc
Confidence            59999854 45552    3499999999999998876  46789999887655443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.49  E-value=0.043  Score=49.91  Aligned_cols=34  Identities=21%  Similarity=0.553  Sum_probs=25.8

Q ss_pred             ccccccccCCCCCcEEccC------------CCcc-ChhhHHHHHHh
Q 014562          135 FFDCNICLDLSRDPVVTCC------------GHLF-CWPCLYRWLHV  168 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~C------------GH~F-C~~CI~~wl~~  168 (422)
                      ...||||++...++|++-|            +-.| +..|+.++.+.
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka   48 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA   48 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence            4589999999999998754            3222 46899988765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PHA03096 p28-like protein; Provisional

Probab=93.73  E-value=0.031  Score=55.72  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=35.1

Q ss_pred             cccccccCCCCC--------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562          136 FDCNICLDLSRD--------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE  181 (422)
Q Consensus       136 ~~C~ICl~~~~~--------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~  181 (422)
                      ..|.||++....        .++..|-|.||..|+..|-........||.|+..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~  232 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL  232 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence            489999998753        2456899999999999998874445567776654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.72  E-value=0.041  Score=55.48  Aligned_cols=51  Identities=20%  Similarity=0.456  Sum_probs=36.9

Q ss_pred             ccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          137 DCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       137 ~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      .||+|++.+...    .--+||-..|..|+...-..  -...||.||......++.-
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--lngrcpacrr~y~denv~~   70 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--LNGRCPACRRKYDDENVRY   70 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhh--ccCCChHhhhhccccceeE
Confidence            499999987543    23478988888887654433  2458999999888777653

>PHA02862 5L protein; Provisional

Probab=93.50  E-value=0.048  Score=48.88  Aligned_cols=50  Identities=30%  Similarity=0.700  Sum_probs=39.0

Q ss_pred             ccccccCCCCCcEEccCCC-----ccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562          137 DCNICLDLSRDPVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       137 ~C~ICl~~~~~pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~  188 (422)
                      .|-||.+.-.+. .-||.-     .-|..|+.+|+.. +++..|+.|+.++..+..+
T Consensus         4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~Ik~~y   58 (156)
T PHA02862          4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNIKKTY   58 (156)
T ss_pred             EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEEEEcc
Confidence            799999987655 467753     4689999999976 7788999999988654433

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.39  E-value=0.075  Score=48.41  Aligned_cols=51  Identities=29%  Similarity=0.577  Sum_probs=38.7

Q ss_pred             CCccccccccCCCCCcEEccCCC-----ccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVCKGEVTVK  185 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~  185 (422)
                      .....|-||.+.... ...||.-     ..|..|+.+|+.. ++...|+.|+.++...
T Consensus         6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~-s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINT-SKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhc-CCCCcccccCCeEEEE
Confidence            345699999988643 3456653     3489999999997 5678999999987654

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.059  Score=51.60  Aligned_cols=47  Identities=28%  Similarity=0.655  Sum_probs=37.5

Q ss_pred             cccccccCCCCCc--EEccCCCccChhhHHHHHHhc-----CCCCCCCCCCccc
Q 014562          136 FDCNICLDLSRDP--VVTCCGHLFCWPCLYRWLHVH-----SDAKECPVCKGEV  182 (422)
Q Consensus       136 ~~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl~~~-----~~~~~CPvCr~~l  182 (422)
                      -.|.+|...+...  +.+.|-|.|+|.|+..|...-     ..-..||.|..++
T Consensus        51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            3899999988654  678999999999999998762     2234799998765

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.21  E-value=0.06  Score=39.57  Aligned_cols=43  Identities=23%  Similarity=0.593  Sum_probs=21.1

Q ss_pred             cccccCCCCCc--EEc--cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562          138 CNICLDLSRDP--VVT--CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV  182 (422)
Q Consensus       138 C~ICl~~~~~p--v~l--~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l  182 (422)
                      ||+|.+.+...  ...  +||+.+|..|+...+..  ....||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCC
Confidence            78888887322  123  68999999998887763  356899999864

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=93.06  E-value=0.039  Score=45.99  Aligned_cols=30  Identities=27%  Similarity=0.655  Sum_probs=25.2

Q ss_pred             CccccccccCCCCCcE--EccCCCccChhhHH
Q 014562          134 SFFDCNICLDLSRDPV--VTCCGHLFCWPCLY  163 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv--~l~CGH~FC~~CI~  163 (422)
                      +...|++|...+...+  ..||||.||..|+.
T Consensus        77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3458999999998764  56999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=93.04  E-value=0.02  Score=62.82  Aligned_cols=52  Identities=27%  Similarity=0.793  Sum_probs=42.3

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      .+.|+||...+.+|+.+.|-|.||..|+..-+....+...||+|+..+....
T Consensus        21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s   72 (684)
T KOG4362|consen   21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS   72 (684)
T ss_pred             hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence            4699999999999999999999999999875555344678999986654433

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.03  E-value=0.055  Score=54.38  Aligned_cols=46  Identities=28%  Similarity=0.745  Sum_probs=36.7

Q ss_pred             CCCccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          132 DGSFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ..+.+.||||.+.+..|+. -.=||.-|..|-.+.      ...||.|+.++.
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------SNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhhh------cccCCccccccc
Confidence            3467899999999999863 355999999997632      347999999876

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.88  E-value=0.073  Score=51.65  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=32.6

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHh
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV  168 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~  168 (422)
                      ..++..|.+|+..+.+|++++=||.||..||.+++-.
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            3466789999999999999999999999999987654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=92.66  E-value=0.039  Score=55.07  Aligned_cols=44  Identities=27%  Similarity=0.575  Sum_probs=32.2

Q ss_pred             ccccccccCCCCC-cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          135 FFDCNICLDLSRD-PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       135 ~~~C~ICl~~~~~-pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      .-.|.-|--.+.. ..+++|.|+||.+|...  ..   .+.||.|-.++.
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~---dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS---DKICPLCDDRVQ  134 (389)
T ss_pred             eEeecccCCcceeeecccccchhhhhhhhhc--Cc---cccCcCcccHHH
Confidence            3577888776654 35789999999999753  22   458999977653

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.60  E-value=0.03  Score=64.73  Aligned_cols=43  Identities=42%  Similarity=0.994  Sum_probs=38.4

Q ss_pred             CccccccccCCCC-CcEEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562          134 SFFDCNICLDLSR-DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK  179 (422)
Q Consensus       134 ~~~~C~ICl~~~~-~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr  179 (422)
                      ..+.|.||++.+. ...+..|||.+|..|+..|+..   +..||.|+
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---SSRCPICK 1195 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---hccCcchh
Confidence            4459999999998 5678899999999999999998   66899997

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.23  E-value=0.09  Score=48.69  Aligned_cols=54  Identities=31%  Similarity=0.647  Sum_probs=39.0

Q ss_pred             CCCccccccccCCCCCcE-------EccCCCccChhhHHHHHHhcC---C-----CCCCCCCCcccccC
Q 014562          132 DGSFFDCNICLDLSRDPV-------VTCCGHLFCWPCLYRWLHVHS---D-----AKECPVCKGEVTVK  185 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv-------~l~CGH~FC~~CI~~wl~~~~---~-----~~~CPvCr~~l~~~  185 (422)
                      ++....|-||+.+--+..       ...||..|+.-|+..||+..-   .     -..||.|-.++..+
T Consensus       162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            344558899987654442       357999999999999998621   1     13799999887653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.15  E-value=0.065  Score=59.72  Aligned_cols=41  Identities=27%  Similarity=0.613  Sum_probs=34.5

Q ss_pred             CccccccccCCCCCcE-EccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562          134 SFFDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKG  180 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~  180 (422)
                      +.-.|..|-..+.-|+ ...|||.||..|+.   .   +...||.|+.
T Consensus       839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---~~~~CP~C~~  880 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---KEDKCPKCLP  880 (933)
T ss_pred             eeeeecccCCccccceeeeecccHHHHHhhc---c---CcccCCccch
Confidence            4469999999999996 57999999999988   2   2568999976

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.20  E-value=0.071  Score=47.32  Aligned_cols=34  Identities=32%  Similarity=0.734  Sum_probs=27.7

Q ss_pred             ccccccccCCCCC--cE-EccCC------CccChhhHHHHHHh
Q 014562          135 FFDCNICLDLSRD--PV-VTCCG------HLFCWPCLYRWLHV  168 (422)
Q Consensus       135 ~~~C~ICl~~~~~--pv-~l~CG------H~FC~~CI~~wl~~  168 (422)
                      ...|.||++.+.+  ++ .++||      |.||..|+.+|-..
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            5699999999987  65 45776      67999999999544

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.59  E-value=0.24  Score=48.29  Aligned_cols=55  Identities=20%  Similarity=0.380  Sum_probs=44.0

Q ss_pred             CCccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          133 GSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ...|.|||-.-.+..-    ++.+|||+|-..-+.+.-..     .|++|...+...+++.+-+
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas-----~C~~C~a~y~~~dvIvlNg  167 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKAS-----VCHVCGAAYQEDDVIVLNG  167 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhhhc-----cccccCCcccccCeEeeCC
Confidence            4578999987777654    46699999999998876644     8999999999988887543

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.58  E-value=0.26  Score=35.29  Aligned_cols=40  Identities=20%  Similarity=0.586  Sum_probs=24.6

Q ss_pred             cccccCCCCCcEEc---cCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          138 CNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      |.+|.++...++.=   .|+=.++..|+..++.... ...||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-NPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-S-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-CCCCcCC
Confidence            78899999888754   4998999999999998733 3379988

; PDB: 3NW0_A 2CT0_A.

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=90.36  E-value=0.17  Score=36.82  Aligned_cols=40  Identities=33%  Similarity=0.960  Sum_probs=26.3

Q ss_pred             cccccCCCCC--cEEccCCC-----ccChhhHHHHHHhcCCCCCCCCC
Q 014562          138 CNICLDLSRD--PVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       138 C~ICl~~~~~--pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      |-||++...+  +.+.||+=     ..|..|+.+|+.. ++...|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence            6788877643  46778863     4689999999997 446679988

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.26  E-value=0.23  Score=36.68  Aligned_cols=45  Identities=29%  Similarity=0.698  Sum_probs=23.4

Q ss_pred             cccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcc
Q 014562          136 FDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGE  181 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~  181 (422)
                      +.|||....+..|+. ..|.|.-|.+ +..|+..  ......||+|.++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence            689999999999984 6999997754 3345443  2345789999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=90.13  E-value=0.25  Score=55.21  Aligned_cols=50  Identities=28%  Similarity=0.769  Sum_probs=38.6

Q ss_pred             CCccccccccCCCCC--cEE--ccCCCccChhhHHHHHHh----cCCCCCCCCCCccc
Q 014562          133 GSFFDCNICLDLSRD--PVV--TCCGHLFCWPCLYRWLHV----HSDAKECPVCKGEV  182 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~--pv~--l~CGH~FC~~CI~~wl~~----~~~~~~CPvCr~~l  182 (422)
                      ...+.|-||++.+..  ++.  ..|-|+|+..||..|...    ......||.|....
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            356899999999864  442  468999999999999876    22457899998543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.41  E-value=0.16  Score=56.91  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=26.9

Q ss_pred             ccccccccCCCC-Cc-EEccCCCccChhhHHHHHHh
Q 014562          135 FFDCNICLDLSR-DP-VVTCCGHLFCWPCLYRWLHV  168 (422)
Q Consensus       135 ~~~C~ICl~~~~-~p-v~l~CGH~FC~~CI~~wl~~  168 (422)
                      ...|.+|...+. .| ++.+|||.||+.||.+....
T Consensus       817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~  852 (911)
T KOG2034|consen  817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS  852 (911)
T ss_pred             ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence            349999998774 45 46799999999999876543

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=89.05  E-value=0.18  Score=59.05  Aligned_cols=51  Identities=27%  Similarity=0.603  Sum_probs=37.7

Q ss_pred             CccccccccCCCCC--c-EEccCCCccChhhHHHHHHhc--C-----CCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRD--P-VVTCCGHLFCWPCLYRWLHVH--S-----DAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~--p-v~l~CGH~FC~~CI~~wl~~~--~-----~~~~CPvCr~~l~~  184 (422)
                      ....|-||+...-.  | +.+.|+|.|+..|..+.|...  +     +-..||+|+.++..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            34589999876532  3 678999999999998877761  1     12479999887754

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.93  E-value=0.23  Score=49.81  Aligned_cols=54  Identities=28%  Similarity=0.477  Sum_probs=40.9

Q ss_pred             CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ...|.||+=.+.-.+   |+++.|||+.-..-+.+.-++..-.+.||.|-..-...+
T Consensus       334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~  390 (396)
T COG5109         334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYEN  390 (396)
T ss_pred             cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhh
Confidence            356899987666543   789999999999999887776444689999965544433

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=88.75  E-value=0.32  Score=54.19  Aligned_cols=56  Identities=29%  Similarity=0.634  Sum_probs=43.4

Q ss_pred             CCCccccccccCCC--CCcEEccCCCc-----cChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562          132 DGSFFDCNICLDLS--RDPVVTCCGHL-----FCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       132 ~~~~~~C~ICl~~~--~~pv~l~CGH~-----FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~  188 (422)
                      .+++..|-||...-  .+|..-||..+     .|.+|+.+|+.. ++..+|-+|+.++..++++
T Consensus         9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~IY   71 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKDIY   71 (1175)
T ss_pred             CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeeeec
Confidence            34557999998665  44666677643     689999999995 7788999999998877665

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=88.59  E-value=0.13  Score=49.65  Aligned_cols=46  Identities=24%  Similarity=0.572  Sum_probs=34.9

Q ss_pred             cccccccCC-CCCcE----Ecc-CCCccChhhHHHHHHhcCCCCCCC--CCCcccc
Q 014562          136 FDCNICLDL-SRDPV----VTC-CGHLFCWPCLYRWLHVHSDAKECP--VCKGEVT  183 (422)
Q Consensus       136 ~~C~ICl~~-~~~pv----~l~-CGH~FC~~CI~~wl~~~~~~~~CP--vCr~~l~  183 (422)
                      ..||||... +-.|-    +-| |-|..|.+|+.+.+..  +...||  -|.+-+.
T Consensus        11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~--GpAqCP~~gC~kILR   64 (314)
T COG5220          11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR--GPAQCPYKGCGKILR   64 (314)
T ss_pred             ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC--CCCCCCCccHHHHHH
Confidence            489999854 45552    234 9999999999999987  466899  7876553

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.25  E-value=0.29  Score=46.75  Aligned_cols=39  Identities=28%  Similarity=0.703  Sum_probs=30.7

Q ss_pred             cccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          138 CNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       138 C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      |-+|.+.-..-+++||-|. +|..|-..       ...||+|+....
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDES-------LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccccc-------CccCCCCcChhh
Confidence            9999988877778899987 79999432       447999987543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.03  E-value=0.15  Score=37.28  Aligned_cols=43  Identities=26%  Similarity=0.699  Sum_probs=24.9

Q ss_pred             ccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          137 DCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       137 ~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .|--|+-..  --++.|. |..|..|+...+..   +..||+|..++..
T Consensus         4 nCKsCWf~~--k~Li~C~dHYLCl~CLt~ml~~---s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCWFAN--KGLIKCSDHYLCLNCLTLMLSR---SDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS-S----SSEEE-SS-EEEHHHHHHT-SS---SSEETTTTEE---
T ss_pred             cChhhhhcC--CCeeeecchhHHHHHHHHHhcc---ccCCCcccCcCcc
Confidence            566666433  3356676 88899999988877   7789999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=87.98  E-value=0.32  Score=50.06  Aligned_cols=36  Identities=22%  Similarity=0.862  Sum_probs=28.0

Q ss_pred             CCCccChhhHHHHHHhc----------CCCCCCCCCCcccccCCce
Q 014562          153 CGHLFCWPCLYRWLHVH----------SDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       153 CGH~FC~~CI~~wl~~~----------~~~~~CPvCr~~l~~~~l~  188 (422)
                      |.-..|..|+.+|+...          +++..||+||+.+...|+.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~  356 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVC  356 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeee
Confidence            44456889999999862          3467899999999887764

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.36  E-value=0.27  Score=48.70  Aligned_cols=36  Identities=25%  Similarity=0.677  Sum_probs=31.7

Q ss_pred             CccccccccCCCCCcEEccC----CCccChhhHHHHHHhc
Q 014562          134 SFFDCNICLDLSRDPVVTCC----GHLFCWPCLYRWLHVH  169 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~C----GH~FC~~CI~~wl~~~  169 (422)
                      ..+.|.+|.+.+.+.....|    .|.||..|-.+.++.+
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q  306 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ  306 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence            45899999999999887777    6999999999988873

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.18  E-value=0.36  Score=50.26  Aligned_cols=55  Identities=27%  Similarity=0.680  Sum_probs=36.6

Q ss_pred             CccccccccCCCCCc----EEccCCCccChhhHHHHHHhc---CCCCCCCC--CCcccccCCce
Q 014562          134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVH---SDAKECPV--CKGEVTVKNIT  188 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~---~~~~~CPv--Cr~~l~~~~l~  188 (422)
                      ....|.||......+    .+..|+|.||..|+.+++...   +....||.  |...++...+.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~  208 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCR  208 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHh
Confidence            456999999444333    256899999999999988763   23456654  55555544433

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=86.82  E-value=0.31  Score=48.38  Aligned_cols=42  Identities=29%  Similarity=0.666  Sum_probs=35.0

Q ss_pred             cccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562          136 FDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG  180 (422)
Q Consensus       136 ~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~  180 (422)
                      ..||||.+.+..    +..++|||..+..|+......   ...||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~---~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE---GYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhcc---CCCCCcccc
Confidence            459999988754    457899999999999988776   389999988

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.89  E-value=0.4  Score=53.27  Aligned_cols=48  Identities=15%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             ccccccccCCCCCcE----Ec---cCCCccChhhHHHHHHhc---CCCCCCCCCCccc
Q 014562          135 FFDCNICLDLSRDPV----VT---CCGHLFCWPCLYRWLHVH---SDAKECPVCKGEV  182 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv----~l---~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l  182 (422)
                      ...|.||...+..++    +.   .|+|.||..||..|....   ..+..|++|..-|
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            457888888777743    33   499999999999998761   2245678887653

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.78  E-value=0.37  Score=47.94  Aligned_cols=37  Identities=24%  Similarity=0.770  Sum_probs=29.3

Q ss_pred             CCCccChhhHHHHHHh----------cCCCCCCCCCCcccccCCcee
Q 014562          153 CGHLFCWPCLYRWLHV----------HSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       153 CGH~FC~~CI~~wl~~----------~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      |....|.+|+.+|+..          +.++..||.||+.+...++.-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~  371 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC  371 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence            5566789999999865          355789999999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	422
1jm7_A	112	Solution Structure Of The Brca1/bard1 Ring-domain H		3e-07
2ldr_A	82	Solution Structure Of Helix-Ring Domain Of Cbl-B In		2e-04
2ysl_A	73	Solution Structure Of The Ring Domain (1-66) From T		3e-04
2k4d_A	83	E2-C-Cbl Recognition Is Necessary But Not Sufficien		8e-04
3vgo_A	394	Crystal Structure Of The N-Terminal Fragment Of Cbl		9e-04

>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
            +C ICL+L ++PV T C H+FC  C+ + L+      +CP+CK ++T +++
Sbjct: 22  LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73

>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The Tyr363 Phosphorylated Form Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
           C IC +  +D  +  CGHL C  CL  W    SD + CP C+ E  +K   PI
Sbjct: 29  CKICAENDKDVKIEPCGHLMCTSCLTAWQ--ESDGQGCPFCRCE--IKGTEPI 77

>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From Tripartite Motif-containing Protein 31 Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
           C ICLD+ + PV   CGH FC  C+ +         +CP+CK  V
Sbjct: 23  CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67

>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For Ubiquitination Activity Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
           C IC +  +D  +  CGHL C  CL  W    S+ + CP C+ E  +K   PI
Sbjct: 27  CKICAENDKDVKIEPCGHLMCTSCLTSWQ--ESEGQGCPFCRCE--IKGTEPI 75

>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B Length = 394

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
           C IC +  +D  +  CGHL C  CL  W    SD + CP C+ E  +K   PI
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAW--QESDGQGCPFCRCE--IKGTEPI 389

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	7e-22
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-19
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-19
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-19
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-18
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-18
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-17
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	9e-15
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-14
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-14
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	6e-14
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	9e-14
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-13
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-13
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	1e-13
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-13
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	2e-13
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-13
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	7e-13
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-12
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-12
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-12
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-12
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-12
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-11
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-11
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-11
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-11
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	4e-11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-11
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-10
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-09
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-07
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-07
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-07
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	8e-07
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-06
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-06
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-06
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	8e-06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	9e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	9e-06
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	1e-05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-05
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	7e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	8e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	8e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	8e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	1e-04
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-04
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	2e-04
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	5e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	6e-04

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 87.5 bits (217), Expect = 7e-22
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 133 GSFFDCNICLDL-------SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
           G+   C IC+D         R  V T CGH+FC  CL   L        CP C+ ++  K
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHK 57

Query: 186 NITPIY 191
              PIY
Sbjct: 58  RYHPIY 63

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 81.8 bits (202), Expect = 1e-19
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 129 SGNDGSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
                    C IC+D   +        V T CGH+FC  CL   L        CP C+ +
Sbjct: 4   GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKK 60

Query: 182 VTVKNITPIY 191
           +  K   PIY
Sbjct: 61  INHKRYHPIY 70

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 88.7 bits (219), Expect = 2e-19
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 101 NEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWP 160
           N+ P          +D +   ++  E       +F  C IC +  +D  +  CGHL C  
Sbjct: 298 NQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTS 357

Query: 161 CLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           CL  W    S+ + CP C+ E+       + 
Sbjct: 358 CLTSWQ--ESEGQGCPFCRCEIKGTEPIVVD 386

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 79.1 bits (195), Expect = 9e-19
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192
            +  +C ICL     PV   C H+FC+ C+     +    K C +C+ E+    +     
Sbjct: 13  LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG---KRCALCRQEIPEDFLDSGPS 69

Query: 193 RG 194
            G
Sbjct: 70  SG 71

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 125 DEKGSGNDGSFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
           DE+   +    F C IC++  RD  +   C  L C+ C+ RWL       +CP C+  + 
Sbjct: 12  DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--AQCPHCRAPLQ 69

Query: 184 VKNITP 189
           ++ +  
Sbjct: 70  LRELVN 75

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 78.7 bits (194), Expect = 2e-18
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 123 DDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
                GS  +   F C IC    ++PVVT C H FC  C             C +C    
Sbjct: 3   SGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT---PRCYICDQPT 59

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 20/74 (27%), Positives = 40/74 (54%)

Query: 116 DEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKEC 175
           D  + + ++ +          +C ICL+L ++PV T C H+FC  C+ + L+      +C
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 176 PVCKGEVTVKNITP 189
           P+CK ++T +++  
Sbjct: 62  PLCKNDITKRSLQE 75

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 73.7 bits (181), Expect = 6e-17
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
           + C  C  +   P  T CGH FC  C+   L   S   +C  C+  +    +
Sbjct: 16  YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS--PKCTACQESIVKDKV 65

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 67.4 bits (165), Expect = 9e-15
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
             C++CL+  ++PV+  CGH FC  C+ RW         CPVC
Sbjct: 16  ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
           ++C ICL   R+ V T CGH FC  C+ + +       +CPV    +    + P
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFP 70

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
             C ICLD+ + PV   CGH FC  C+ +         +CP+CK  V    I
Sbjct: 21  VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 66.1 bits (161), Expect = 3e-14
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 136 FDCNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
             C IC+D         R  V T CGH+FC  CL   L        CP C+ ++  K
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPTCRKKINHK 69

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 66.9 bits (163), Expect = 6e-14
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
             C IC  +  DPV T C HLFC  C+ R L V      CP C+      ++
Sbjct: 24  ISCQICEHILADPVETSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTDL 73

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
             C ICLD+ + PV   CGH FC  C+ +         +CP+C
Sbjct: 21  VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 67.4 bits (164), Expect = 1e-13
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 115 EDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE 174
           E   ++K++     +    +   C IC +   + V   C H FC  C+  W+       E
Sbjct: 44  EKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK---IE 100

Query: 175 CPVCKGEVTVKN 186
           CP+C+ ++  K 
Sbjct: 101 CPICRKDIKSKT 112

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 138 CNICLD-LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
           C ICL+  S   +   C H FC+ C+ RW+  +     CP+CK  V 
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVE 51

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE----CPVCKGEVTVKNITP 189
           C ICL+L  +P+   CGH  C  C+         +      CPVC    + +++  
Sbjct: 15  CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE---CPVCKGEVTVKNITP 189
           C ICL+L ++PV   C H FC  C+      + +      CPVC+      N+ P
Sbjct: 22  CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE---CPVCKGEVTVKNITP 189
           C ICL+L   P+   CGH FC  CL          K    CPVC+     +NI P
Sbjct: 22  CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 138 CNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
           C IC +     + +  C H +C  C+ ++L   +   +CP C   VT  ++  
Sbjct: 25  CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT---QCPTCCVTVTEPDLKN 74

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 64.8 bits (157), Expect = 7e-13
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 112 GFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSD 171
           GF +  +  K +            + C+ C ++ R P    CGH +C  CL   L     
Sbjct: 18  GFSKTLLGTKLEAK----------YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP- 66

Query: 172 AKECPVCKGEVT 183
            + C  C  E  
Sbjct: 67  -QNCAACVHEGI 77

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
             C IC D+  D VV  CCG+ +C  C+   L + SD   CP C     
Sbjct: 16  LLCLICKDIMTDAVVIPCCGNSYCDECIRTAL-LESDEHTCPTCHQNDV 63

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 114 LEDEVSEKKDDDEKGSGNDGSF-------FDCNICLDLSRDPVVTCCGHLFCWPCLYRWL 166
           L +EV     D          F       F C  C +L   P+ T C H  C  CL R  
Sbjct: 24  LWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSF 83

Query: 167 HVHSDAKECPVCKGEVT 183
              +    CP C+ ++ 
Sbjct: 84  --RAQVFSCPACRYDLG 98

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 64.0 bits (155), Expect = 3e-12
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
           ++C ICL   R+ V T CGH FC  C+ + +       +CPV    +    + P
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFP 70

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
             C IC+++  +PV   C H  C PC    +     +  CP C+  V+   
Sbjct: 16  CQCGICMEILVEPVTLPCNHTLCKPCFQSTV--EKASLCCPFCRRRVSSWT 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 59.8 bits (145), Expect = 6e-12
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 136 FDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
             C+IC     D   +T C H FC  C+ R  +       CP C   V       
Sbjct: 16  ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS---NRCPKCNIVVHQTQPLS 67

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 60.6 bits (146), Expect = 2e-11
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 136 FDCNICLDL-------SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
             C IC+D         R  V T CGH+FC  CL   L    +A  CP C+ ++  K   
Sbjct: 8   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRYH 64

Query: 189 PIYGRGNSTREPEEDSSLK 207
           PIY    +   P       
Sbjct: 65  PIYIGSGTVSCPICMDGYS 83

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 59.0 bits (142), Expect = 6e-11
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 135 FFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
              C IC+D   +        V T CGH+FC  CL   L    +A  CP C+ ++  K  
Sbjct: 72  TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHKRY 128

Query: 188 TPIY 191
            PIY
Sbjct: 129 HPIY 132

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 97  EERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHL 156
            ++ + + + C+N    L DEV     +           F C  C +L   PV T C H 
Sbjct: 42  PQQQHLIREDCQNQK--LWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHN 99

Query: 157 FCWPCLYRWLHVHSDAKECPVCK 179
            C  CL R     +    CP C+
Sbjct: 100 VCKDCLQRSF--KAQVFSCPACR 120

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 138 CNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
           C+ C ++ R+PV +  C H+FC  C+   +        CPVC     ++++  
Sbjct: 25  CSRCTNILREPVCLGGCEHIFCSNCVSDCI-----GTGCPVCYTPAWIQDLKI 72

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCK 179
             C IC D+  D VV  CCG+ +C  C+   L + SD   CP C 
Sbjct: 14  LLCLICKDIMTDAVVIPCCGNSYCDECIRTAL-LESDEHTCPTCH 57

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
           F  C  C   ++ P +  C H  C  CL       +   +CP+C+   
Sbjct: 6   FLRCQQCQAEAKCPKLLPCLHTLCSGCL------EASGMQCPICQAPW 47

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 134 SFFDCNICLDL----SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
              +C IC++        P +  CGH  C  CL + L    +   CP C     + ++T
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 136 FDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
             C +C     D   +  C H FC  C+ R+L      K CP+C  +V
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS---KYCPICDVQV 60

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
           +C IC+D  R  ++  C H FC  C+ +W   H   + CP+C+ ++T  N
Sbjct: 17  ECCICMD-GRADLILPCAHSFCQKCIDKWSDRH---RNCPICRLQMTGAN 62

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 136 FDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
             C ICLD+ ++ +    C H FC  C+   L   S  KECP C+ ++ 
Sbjct: 55  LMCPICLDMLKNTMTTKECLHRFCADCIITAL--RSGNKECPTCRKKLV 101

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 130 GNDGSFFDCNICLD---LSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
           G+ GS   C ICL+    SR       CGHL    C    L        CP+C G  +
Sbjct: 1   GSSGSS-GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR---CPLCSGPSS 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 51/406 (12%), Positives = 96/406 (23%), Gaps = 152/406 (37%)

Query: 1   MGEETSDTM------NLDLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRLRSRQ 54
           +    S          L   + P   ++S       + +          LR   RL   +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELR---RLLKSK 241

Query: 55  RYRWRQVPIPPESRNLPMELD-----QLLSHSANGS-TL-QTGEGSVAAEERANEVPKTC 107
            Y             L + L      +  +        L  T    V     A       
Sbjct: 242 PYE----------NCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 108 --ENNTGFLEDEVSE-------KKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFC 158
              ++     DEV          +  D        +    +I  +  RD + T       
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------- 343

Query: 159 WPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTRE--------PEEDSSLKIPL 210
           W     W HV+ D     +   E ++  + P        R+        P    S  IP 
Sbjct: 344 WD---NWKHVNCDKLTTII---ESSLNVLEP-----AEYRKMFDRLSVFPP---SAHIPT 389

Query: 211 RPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLI 270
                        +                            +       +     N L 
Sbjct: 390 -----------ILLSL--------------------------IWFDVIKSDVMVVVNKLH 412

Query: 271 NRILTSRGIRGEQNTVSAPPDDVDVQSGSNAEGEARFLHSLLMR------RQAQAHRAPT 324
              L  +  + +++T+S                    + S+ +        +   HR   
Sbjct: 413 KYSLVEK--QPKESTIS--------------------IPSIYLELKVKLENEYALHR--- 447

Query: 325 FSSSFSSTLNSAERVLEFYFRNLPERRNQEQPSPPVDDRDSFSSIA 370
                         +++ Y  N+P+  + +   PP  D+  +S I 
Sbjct: 448 -------------SIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIG 478

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 64/469 (13%), Positives = 124/469 (26%), Gaps = 147/469 (31%)

Query: 12  DLNLGPGPEAQSGSIPTEVVNLDDWVDEPIDRLREAVRL----RSRQR------------ 55
           + +     +     +  E +  D  +    D +   +RL     S+Q             
Sbjct: 32  NFDCKDVQDMPKSILSKEEI--DHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 56  --YRWRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGF 113
             Y++   PI  E R   M     +                       +  +   +N  F
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIE----------------------QRDRLYNDNQVF 126

Query: 114 LEDEVSEKKDDDE-------------------KGSGNDGSFFDCNICL--DLSRDPVVTC 152
            +  VS  +   +                    GSG           +  D+     V C
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--------WVALDVCLSYKVQC 178

Query: 153 C--GHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPL 210
                +F       WL++    K C     E  ++ +  +  + +       D S  I L
Sbjct: 179 KMDFKIF-------WLNL----KNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 211 RPQGRRIESLRQTIQRTAYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLI 270
           R     I S++               +RRL         L  L +  +A+          
Sbjct: 226 R-----IHSIQ-------------AELRRLLKSKPYENCLLVLLNVQNAK--------AW 259

Query: 271 N------RIL-TSRG---IRGEQNTVSAPPDDVDVQSG-SNAEGEARFLHSLLMR----- 314
           N      +IL T+R            +            +  E ++  L  L  R     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 315 RQAQAHRAPTFSSSFSSTLNSAERVLEFYFRNLPERRNQEQPS-----PPVDDRDSFSSI 369
           R+      P   S  + ++       + +     ++      S      P + R  F  +
Sbjct: 320 REVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 370 A-----AVINSE------SQMDTAVEIDSMVSLSTSSS-RRRSDSSRVS 406
           +     A I +         +  +  +  +  L   S   ++   S +S
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 137 DCNICLDLSRD----PVVTC----CGHLFCWPCLYRWLHVHSDAK--------ECPVCKG 180
            CNIC     D    P+V+C    C       CL  W     D K        +CP CK 
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369

Query: 181 EVTVK 185
           +++  
Sbjct: 370 KLSTS 374

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 133 GSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           GS   C I   + R PV++     +F    L +++         P+    ++++ I  I 
Sbjct: 1   GSHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEEIVEIV 57

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 129 SGNDG------SFFDCNICLD-LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
           SG+ G      +   CNIC   L +      CG     PC+ ++   +++ + CP C   
Sbjct: 3   SGSSGRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR-CPHCNDY 61

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 123 DDDEKGSGNDGSFFDCNICLD-LSRDPVVTC--CGHLFCWPCLYRWLHVHSDAKECPVCK 179
            +D    G +     C IC     +  V T   C H F  PC+  WL        CPVC+
Sbjct: 31  TEDHGAVGQEM---CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGT---CPVCR 84

Query: 180 GEV 182
              
Sbjct: 85  CMF 87

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 122 KDDDEKGSGNDGSFFDCNICLDLSRD-------PVVTCCGHLFCWPCLYRWLHVHSDAKE 174
           K D E+G+  D     C ICL +  +       P    C HLF   C+ +WL  +    +
Sbjct: 2   KQDGEEGTEEDTEE-KCTICLSILEEGEDVRRLP----CMHLFHQVCVDQWLITNK---K 53

Query: 175 CPVCKGEVT 183
           CP+C+ ++ 
Sbjct: 54  CPICRVDIE 62

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 130 GNDGSFFDCNICLD---LSRDPVVTCCGHLFCWPCLYRWLHVH---SDAKE--CPVCK 179
           G+ GS   C +CL    + +   +  C  +FC  CL +++ +           CP   
Sbjct: 1   GSSGSS-GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 119 SEKKDDDEKGSGNDGSFFDCNICLD--LSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKEC 175
           S      ++ + ++     C +CL+    RD +  C C H F   CL +WL V      C
Sbjct: 3   SGSSGKVKELNLHE----LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK---VC 55

Query: 176 PVCKGEVT 183
           P+C   V 
Sbjct: 56  PLCNMPVL 63

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 119 SEKKDDDEKGSGNDGSFFDCNICL-DLSRDPVVTC--CGHLFCWPCLYRWLHVHSDAKEC 175
           S      E+  G+     +C +C  D +    V    C HLF   C+  WL  H     C
Sbjct: 2   SSGSSGTEEHVGSGL---ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD---SC 55

Query: 176 PVCKGEVTVKN 186
           PVC+  +T +N
Sbjct: 56  PVCRKSLTGQN 66

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 18/66 (27%)

Query: 137 DCNICLDLSRDPVVTC---------------CGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
            C IC     D  + C               C H F   C+  W+  ++    CP+C+ +
Sbjct: 17  TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQD 73

Query: 182 VTVKNI 187
             V+ I
Sbjct: 74  WVVQRI 79

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 97  EERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVV-TCCGH 155
            +    +P    + T  + D  +   +DD +  G       C I       P++   C H
Sbjct: 144 LKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIEL-TCPITCKPYEAPLISRKCNH 202

Query: 156 LFCWPCLYRWLHVHSDAKECPV--CKGEVTVKNITP 189
           +F    +  +L  ++  ++CP   C   V++++   
Sbjct: 203 VFDRDGIQNYLQGYT-TRDCPQAACSQVVSMRDFVR 237

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 116 DEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDP------------------VVTCCGHLF 157
           ++V  K  ++ K +  +    DC IC++                        +T C H F
Sbjct: 10  EQVIRKYTEELKVAPEE----DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF 65

Query: 158 CWPCLYRWLHVHSDA--KECPVCKGEVTVKNITPIYGRGNSTR 198
              CL       +     +CP CK     K  T  +G+    R
Sbjct: 66  HLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFR 108

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 128 GSGNDGSFFDCNICL------DLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
              +     +C +CL      + +R   +  CGH F   C+  WL  HS    CP+C+  
Sbjct: 1   AMDDG---VECAVCLAELEDGEEAR--FLPRCGHGFHAECVDMWLGSHST---CPLCRLT 52

Query: 182 VTV 184
           V V
Sbjct: 53  VVV 55

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 137 DCNICLDLSRDPVVTC--CGHLF-CWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
            C++C    RD  +     GHL  C+ C  R   +      CP+CK E  ++ +  ++
Sbjct: 9   PCSLCEKRPRDGNIIHGRTGHLVTCFHCARR---LKKAGASCPICKKE--IQLVIKVF 61

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 138 CNICLDLSRDPVV--TCCGHLF-CWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           C IC    ++  +     GHL  C+ C  +   +    K CPVC+    ++ I   Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKK---LKKRNKPCPVCRQP--IQMIVLTY 62

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 132 DGSFFDCNICLDLSRDPVVTC--CGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
             +   CNIC  L      +C  CG     PC+ ++   +++ + CP C   
Sbjct: 177 PDAVKICNICHSLL-IQGQSCETCGIRMHLPCVAKYFQSNAEPR-CPHCNDY 226

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 3/141 (2%)

Query: 27  PTEVVNLDDWVDEPIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLSHSANGST 86
             + +N  D +   +   ++       +R R  Q           +  ++          
Sbjct: 103 KEQRLNFGDDIPSALRIAKKKRWNSIEER-RIHQESELHSYLTRLIAAERERELEECQRN 161

Query: 87  LQTGEGSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSR 146
            +  E       +   +    +     +++  S+  +  +K    D  +    I  +L R
Sbjct: 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPD--YLCGKISFELMR 219

Query: 147 DPVVTCCGHLFCWPCLYRWLH 167
           +P +T  G  +    +   L 
Sbjct: 220 EPCITPSGITYDRKDIEEHLQ 240

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
            +F C I L+L +DPV+   G  +    + +WL   +  K CP  +  +    +TP
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWL--DAGHKTCPKSQETLLHAGLTP 60

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 131 NDGSFFDCNICLDL----SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
                 +C +C++       +     CG+  C  C +R      +   CP C+       
Sbjct: 7   AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR--TDENGLCPACRKPYPEDP 64

Query: 187 I 187
            
Sbjct: 65  A 65

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)

Query: 136 FDCNICL-DLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
             C  C     R+P    +V  CGH  C  C+       +    CP C   +   N   
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA--GNCPECGTPLRKSNFRV 60

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 127 KGSGNDGSFFDCNICL-DLSRDPVVTC--CGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
             + +      C +C+ D     ++    C H F   C+ +WL  +     CP+C+ + 
Sbjct: 15  NPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR---TCPICRADS 70

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 138 CNICLDLSRDPVVTCCGHLF-CWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           C +C +   +     CGH   C  C  +        + CPVC+    V+++  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQ-------LQSCPVCRS--RVEHVQHVY 66

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 116 DEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKEC 175
           +E+  K    E    +    F   +   L  DPV    G +     + R L         
Sbjct: 10  EEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS---PTD 66

Query: 176 PVCKGEVTVKNITP 189
           P  +  +T   + P
Sbjct: 67  PFNRQTLTESMLEP 80

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 2/144 (1%)

Query: 46  EAVRLRSRQRYRWRQVPIPPESRNLPMELDQLLSHSANGSTLQTGEGSVAAEERANEVPK 105
            A+R+  ++R+   +     +   L   L +L+            + S  ++   +    
Sbjct: 17  SALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKM 76

Query: 106 TCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRW 165
             +++   ++ +    + D+++       +    I  +L R+P +T  G  +    +   
Sbjct: 77  KSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEH 136

Query: 166 LHVHSDAKECPVCKGEVTVKNITP 189
           L         PV +  +T   + P
Sbjct: 137 L--QRVGHFDPVTRSPLTQDQLIP 158

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 138 CNICLDLSRDPVVTCCGHLF-CWPCLYRWLHVHSDAKECPVCKGEVT 183
           C IC+D +   V   CGHL  C  C            +CP+C   +T
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVIT 67

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 119 SEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPV 177
           S      E    N     DC +C + + + V+  C H   C  C+          ++CP+
Sbjct: 2   SSGSSGVEPSEENSK---DCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPM 51

Query: 178 CKGEVTVKNITPIYG 192
           C+  V       + G
Sbjct: 52  CRQFVQ--ESFALSG 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	422
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.48
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.45
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.44
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.44
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.42
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.42
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.42
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.42
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.41
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.41
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.39
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.38
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.36
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.36
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.35
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.34
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.34
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.33
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.31
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.31
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.31
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.31
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.3
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.29
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.27
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.27
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.25
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.24
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.22
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.22
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.22
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.21
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.21
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.2
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.2
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.18
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.18
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.17
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.17
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.15
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.15
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.15
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.11
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.07
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.02
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.02
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.01
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.93
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.91
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.91
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.9
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.81
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.76
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.75
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.7
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.69
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.62
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.6
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.53
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.34
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.16
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.12
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.9
3nw0_A	238	Non-structural maintenance of chromosomes element	96.91
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.53
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.0
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.26
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	91.74
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	89.58
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	88.4

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.48  E-value=6.3e-15  Score=116.21  Aligned_cols=66  Identities=26%  Similarity=0.534  Sum_probs=56.3

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP  200 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~  200 (422)
                      .+.+.|+||++.|.+|++++|||+||..||..|+..  +...||+|+.++...++.+++.+.+.+..+
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~   71 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPNYVLKSLIALW   71 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred             cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH--CcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence            467899999999999999999999999999999975  367899999999988888877665544443

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.45  E-value=1.3e-14  Score=117.33  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP  200 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~  200 (422)
                      ..+++.|+||++.|.+||+++|||+||..||..|+..   ...||+|+.++...+++++..+.+.+..|
T Consensus        11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~l~pn~~L~~~i~~~   76 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTESMLEPVPELKEQIQAW   76 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence            3467999999999999999999999999999999997   57899999999988888887665544433

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=2e-13  Score=108.30  Aligned_cols=65  Identities=29%  Similarity=0.639  Sum_probs=56.5

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhc---CCCCCCCCCCcccccCCceecccCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH---SDAKECPVCKGEVTVKNITPIYGRGNST  197 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l~~~~l~~~~~~~~~~  197 (422)
                      .+.+.|+||++.+.+|++++|||+||..||..|+...   .....||+|+..+...++.+++.+.+++
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            3568999999999999999999999999999999872   2367899999999999999988776653

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.44  E-value=1.5e-14  Score=120.68  Aligned_cols=67  Identities=16%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPE  201 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~  201 (422)
                      ..+.+.||||+++|.+||+++|||+||..||..|+..   ...||+|+.++...+++++..+.+.+..|.
T Consensus        26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---SPTDPFNRQTLTESMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred             CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence            3468999999999999999999999999999999986   578999999999999999887766655553

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.42  E-value=5.3e-14  Score=108.53  Aligned_cols=57  Identities=39%  Similarity=0.802  Sum_probs=51.4

Q ss_pred             CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      .+.+.|+||++.+.++       +.++|||.||..||..|+..   ...||+||..+...++.++|.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~l   71 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI   71 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCCCSCCCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---CCCCCCCCCccChhheeeccC
Confidence            4567999999999887       88999999999999999998   579999999999999888773

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.42  E-value=3.8e-14  Score=115.17  Aligned_cols=65  Identities=26%  Similarity=0.455  Sum_probs=52.6

Q ss_pred             CCCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCccc-ccCCceecccCCCCC
Q 014562          132 DGSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEV-TVKNITPIYGRGNST  197 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l-~~~~l~~~~~~~~~~  197 (422)
                      ..+.+.|+||++.|.+|++++ |||+||..||..|+.. .+...||+|+..+ ....+.+++.+.+++
T Consensus        10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i   76 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDVSPDALIANKFLRQAV   76 (92)
T ss_dssp             CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH-CTTCCCTTTCCSSCCTTSCEECHHHHHHH
T ss_pred             CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh-cCCCcCcCCCCcCCCccccCcCHHHHHHH
Confidence            346789999999999999999 9999999999999986 2356899999997 455666666554433

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-13  Score=107.87  Aligned_cols=65  Identities=32%  Similarity=0.618  Sum_probs=56.1

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHh---cCCCCCCCCCCcccccCCceecccCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV---HSDAKECPVCKGEVTVKNITPIYGRGNST  197 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~---~~~~~~CPvCr~~l~~~~l~~~~~~~~~~  197 (422)
                      .+.+.|+||++.+.+|+.++|||+||..||..|+..   ......||+|+..+...++.+++.+.+++
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            356899999999999999999999999999999976   23367899999999998888888776653

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.42  E-value=4.5e-14  Score=111.18  Aligned_cols=65  Identities=25%  Similarity=0.524  Sum_probs=55.8

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhc----CCCCCCCCCCcccccCCceecccCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH----SDAKECPVCKGEVTVKNITPIYGRGNST  197 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~----~~~~~CPvCr~~l~~~~l~~~~~~~~~~  197 (422)
                      .+.+.|+||++.|.+|+.++|||+||..||..|+...    .....||+||..+...++.+++.+.+++
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            4568999999999999999999999999999999762    2256899999999988888888776653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=105.68  Aligned_cols=56  Identities=25%  Similarity=0.501  Sum_probs=49.4

Q ss_pred             CCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          133 GSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      .+.+.|+||++.+.+|+.+ +|||.||..||..|+..   ...||+||..+...++..+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~   69 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQTQPLSGP   69 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSSCSCCCC
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcccccccC
Confidence            4568999999999999986 99999999999999987   67999999999887766543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.41  E-value=3.2e-14  Score=118.20  Aligned_cols=68  Identities=19%  Similarity=0.090  Sum_probs=59.8

Q ss_pred             CCCccccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCccc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEE  202 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e  202 (422)
                      ..+++.||||+++|.+||+++|| |+||..||..|+..   ...||+|+.++...++++++.+.+.+..|..
T Consensus        19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~   87 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPNTELKEKIQRWLA   87 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred             CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence            34679999999999999999999 99999999999987   5689999999999999998887766665543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.39  E-value=1.1e-13  Score=104.23  Aligned_cols=56  Identities=39%  Similarity=0.841  Sum_probs=50.7

Q ss_pred             CccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          134 SFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      +.+.|+||++.+.++       +.++|||.||..||..|+..   ...||+||.++...++.++|.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCccceeeeeC
Confidence            457999999999887       78999999999999999998   679999999999999998873

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.8e-13  Score=105.08  Aligned_cols=56  Identities=34%  Similarity=0.685  Sum_probs=48.1

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      ..+.+.|+||++.+.+|+.++|||.||..||..|+........||+||.++...++
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            34568999999999999999999999999999999743346789999999877654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=4.1e-13  Score=102.61  Aligned_cols=54  Identities=24%  Similarity=0.612  Sum_probs=47.2

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      ..+.+.|+||++.+.+|+.++|||+||..||..|+..  ....||+|+.++...++
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--SSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--SSCCCTTTCCCCCTTTC
T ss_pred             CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--CcCCCCCCCcCCChhhc
Confidence            3467899999999999999999999999999999963  35689999999887665

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.36  E-value=2.8e-13  Score=112.43  Aligned_cols=58  Identities=28%  Similarity=0.803  Sum_probs=50.2

Q ss_pred             CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      +.+.|+||++.|.+|+. ++|||.||..||..|+...  ...||+||.++...++.+++.+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~l~~~~~~   79 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQLRELVNCRWA   79 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECTTH
T ss_pred             CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCHHHhHhhHHH
Confidence            45799999999999999 9999999999999999982  2689999999988777765543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.35  E-value=7.9e-13  Score=103.58  Aligned_cols=51  Identities=31%  Similarity=0.641  Sum_probs=44.4

Q ss_pred             CCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+.+.|+||++.|.+|++++ |||+||..||..|+... +...||+||+++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCCC
Confidence            46789999999999999999 99999999999999872 24689999997543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=9.5e-13  Score=104.58  Aligned_cols=48  Identities=31%  Similarity=0.706  Sum_probs=44.4

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      .+.+.|+||++.+.+|++++|||+||..||..|+..   ...||+|+..+.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence            456899999999999999999999999999999987   678999999886

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.9e-13  Score=111.31  Aligned_cols=70  Identities=19%  Similarity=0.372  Sum_probs=58.8

Q ss_pred             CCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhc---CCCCCCCC--CCcc-cccCCceecccCCCCCCCccc
Q 014562          133 GSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVH---SDAKECPV--CKGE-VTVKNITPIYGRGNSTREPEE  202 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~---~~~~~CPv--Cr~~-l~~~~l~~~~~~~~~~~~~~e  202 (422)
                      .+.+.||||+++|.+||+++ |||+||..||..|+..+   .....||+  |+.. +...++++++.+...+..+..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~   81 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK   81 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence            45689999999999999996 99999999999999873   23568999  9887 888999999887776665543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=104.19  Aligned_cols=55  Identities=25%  Similarity=0.739  Sum_probs=47.6

Q ss_pred             CCccccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          133 GSFFDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      .+.+.|+||++.|.+    |+.++|||.||..||..|+........||+||..+...++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i   71 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL   71 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence            456899999999998    9999999999999999999984335789999999876544

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.31  E-value=6.4e-13  Score=111.36  Aligned_cols=58  Identities=33%  Similarity=0.885  Sum_probs=49.4

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      .+.|+||++.+.+|+.++|||+||..||..|+....+...||+|+..+...++.+++.
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~   78 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR   78 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence            4699999999999999999999999999999987444468999999988776655443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.31  E-value=8.6e-13  Score=100.50  Aligned_cols=56  Identities=27%  Similarity=0.528  Sum_probs=48.3

Q ss_pred             ccccccccC-CCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          135 FFDCNICLD-LSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       135 ~~~C~ICl~-~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ++.|+||++ .+.+|    ++++|||+||..||..|+..  +...||+|++++...++.+++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~   63 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRVQLF   63 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEEECC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccccceeecc
Confidence            568999999 88888    57899999999999999875  3568999999999988887653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.1e-12  Score=97.62  Aligned_cols=47  Identities=34%  Similarity=0.757  Sum_probs=41.5

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      ..+.+.|+||++.+.+|++++|||+||..||..|+...+....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34668999999999999999999999999999999864446789998

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.31  E-value=5.2e-13  Score=116.99  Aligned_cols=47  Identities=30%  Similarity=0.851  Sum_probs=43.1

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+.|+||++.|.+|++++|||+||..||..|+..   ...||+||.++..
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---KIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---CSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCceECCCCCCccHHHHHHHHHc---CCcCCCCCCcCCC
Confidence            4689999999999999999999999999999987   6789999998753

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.31  E-value=7.5e-13  Score=113.60  Aligned_cols=58  Identities=26%  Similarity=0.548  Sum_probs=48.3

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc-CCceecccC
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV-KNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~-~~l~~~~~~  193 (422)
                      +.+.|+||++.|.+|++++|||+||..||..|+..  ....||+||.++.. ..+.+++.+
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~n~~l  109 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA--QVFSCPACRYDLGRSYAMQVNQPL  109 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCCCHHH
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH--CcCCCCCCCccCCCCCCCCCCHHH
Confidence            45799999999999999999999999999999985  35589999999876 445554443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.9e-13  Score=103.74  Aligned_cols=52  Identities=29%  Similarity=0.708  Sum_probs=46.2

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      .+.+.|+||++.+.+++.++|||.||..||..|+..   ...||+||..+...++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL---GKRCALCRQEIPEDFL   64 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC---SSBCSSSCCBCCHHHH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC---CCcCcCcCchhCHhhc
Confidence            356799999999999999999999999999999987   5789999999876544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.30  E-value=3.3e-13  Score=129.49  Aligned_cols=68  Identities=16%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPE  201 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~  201 (422)
                      ..+.+.|+||++.|.+||+++|||+||..||..|+...  ...||+|+.++...+++|+..+.+.+..+.
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~  272 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--GHFNPVTRSPLTQEQLIPNLAMKEVIDAFI  272 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT--CSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred             CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC--CCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence            34679999999999999999999999999999999872  234999999999989999887766555543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.29  E-value=8.8e-13  Score=108.72  Aligned_cols=59  Identities=22%  Similarity=0.580  Sum_probs=50.6

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCC
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN  195 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~  195 (422)
                      +.+.|+||++.|.+|+.+ +|||+||..||..|+..   ...||+|+..+...++.+++.+.+
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~n~~l~~   80 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVTEPDLKNNRILDE   80 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHHHH
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCChhhCCcCHHHHH
Confidence            357999999999999987 99999999999999987   579999999998777776655443

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=99.12  Aligned_cols=49  Identities=37%  Similarity=0.815  Sum_probs=43.7

Q ss_pred             CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+.+.|+||++.+.++       +.++|||.||..||..|+..   ...||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence            4567999999999887       88999999999999999998   6799999998753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.27  E-value=2.9e-12  Score=100.86  Aligned_cols=55  Identities=31%  Similarity=0.640  Sum_probs=46.5

Q ss_pred             CCccccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562          133 GSFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI  190 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~  190 (422)
                      .+...|+||++.|..+   +.++|||.||..||..|+..   ...||+||+.+...++.++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---TCSCTTTCCCCCCSCSCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---CCcCcCcCCccCCcccCCC
Confidence            3567999999999866   45799999999999999987   5789999999987766553

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.25  E-value=2.8e-12  Score=107.38  Aligned_cols=49  Identities=31%  Similarity=0.701  Sum_probs=44.4

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK  185 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~  185 (422)
                      +.+.|+||++.+.+|+.+ +|||+||..||..|+..   ...||+|+..+...
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh---CCcCcCCCcccccc
Confidence            457999999999999987 99999999999999987   57999999988754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.24  E-value=2.7e-12  Score=114.37  Aligned_cols=59  Identities=29%  Similarity=0.540  Sum_probs=49.2

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC-CceecccCC
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK-NITPIYGRG  194 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~-~l~~~~~~~  194 (422)
                      +.+.|+||++.|.+|++++|||+||..||..|+..  ....||+||..+... .+.+++.+.
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~n~~l~  136 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQNYIMIPNEILQ  136 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCBCHHHH
T ss_pred             cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh--CCCcCCCCCccCCCCCCCCCCHHHH
Confidence            35799999999999999999999999999999986  345899999998876 455554433

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.22  E-value=1.6e-12  Score=119.16  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP  200 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~  200 (422)
                      ..+.+.||||+++|.+||+++|||+||..||..|+...+  ..||+|+.++...++.||+.+.+.+..|
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~  169 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMKEVIDAF  169 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred             CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence            357899999999999999999999999999999998722  2699999999999999988766554444

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.22  E-value=7.1e-12  Score=91.80  Aligned_cols=47  Identities=32%  Similarity=0.680  Sum_probs=41.4

Q ss_pred             CccccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +...|+||++.+.+    ++.++|||.||..||..|+..   ...||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCcCC
Confidence            45699999999966    678999999999999999998   578999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.22  E-value=4.2e-12  Score=108.68  Aligned_cols=58  Identities=38%  Similarity=0.782  Sum_probs=52.4

Q ss_pred             CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      .+.+.|+||++.|.+|       +.++|||+||..||.+|++.   ...||+|++.+...++.+++..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~l~i~   69 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYIG   69 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---CSBCTTTCCBCTTTCEEECBCS
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---CCCCCCCCCcCccccccccccC
Confidence            3568999999999988       89999999999999999987   6699999999999998887754

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=2.7e-12  Score=98.97  Aligned_cols=50  Identities=32%  Similarity=0.823  Sum_probs=44.6

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      .+.+.|+||++.+.+ +.++|||.||..||..|+..   ...||+||.++...+
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---CSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---cCcCCCcCCcccCCC
Confidence            456799999999999 99999999999999999986   779999999887554

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=8.4e-12  Score=92.29  Aligned_cols=46  Identities=37%  Similarity=0.957  Sum_probs=40.1

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC  178 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC  178 (422)
                      .+.+.|+||++.+.+|++++|||+||..||..|+........||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3567999999999999999999999999999997643346789998

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.21  E-value=1.7e-11  Score=93.73  Aligned_cols=47  Identities=34%  Similarity=0.836  Sum_probs=42.2

Q ss_pred             CccccccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ....|+||++.+.++ +.++|||.||..|+..|+..   ...||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC---cCcCcCCChhhH
Confidence            346899999999997 68899999999999999988   579999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=94.61  Aligned_cols=49  Identities=31%  Similarity=0.749  Sum_probs=41.8

Q ss_pred             CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .....|+||++.|..   ++.++|||.||..||..|+..   ...||+||..+..
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence            355799999998853   467899999999999999998   5689999998764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.20  E-value=6.8e-12  Score=106.86  Aligned_cols=60  Identities=30%  Similarity=0.561  Sum_probs=51.5

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      ..+.+.|+||++.+.+|+.++|||+||..||..|+...  ...||+||.++...++.++..+
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~l   74 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLENQLFPDNFA   74 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHH
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC--CCCCCCCCCCcCHHhcccCHHH
Confidence            44678999999999999999999999999999999872  2389999999988777765543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.18  E-value=1.3e-11  Score=90.52  Aligned_cols=47  Identities=32%  Similarity=0.716  Sum_probs=41.0

Q ss_pred             CccccccccCCCCC---cEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRD---PVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~---pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +...|+||++.+.+   ++.++ |||.||..||..|++.   ...||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence            45699999999987   67776 9999999999999987   678999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1e-11  Score=97.08  Aligned_cols=48  Identities=25%  Similarity=0.638  Sum_probs=42.5

Q ss_pred             CccccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +...|+||++.|..+   +.++|||.||..||..|++.   ...||+||+.+..
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGP   72 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCCC
Confidence            456999999999887   67899999999999999998   5689999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.17  E-value=1e-11  Score=101.21  Aligned_cols=49  Identities=31%  Similarity=0.665  Sum_probs=42.7

Q ss_pred             CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ++...|+||++.|..   ++.++|||.||..||..|+..   ...||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---TCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---CCcCcCcCccCCC
Confidence            456799999999987   667899999999999999987   6699999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=5e-12  Score=107.54  Aligned_cols=55  Identities=25%  Similarity=0.684  Sum_probs=47.1

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      +.+.|+||++.|.+|+++ +|||+||..||..|+.     ..||+|+..+...++.+++.+
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~n~~l   76 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKINRQL   76 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCCCHHH
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccccHHH
Confidence            357999999999999998 9999999999999987     389999999876666655543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.15  E-value=4.8e-12  Score=107.04  Aligned_cols=49  Identities=31%  Similarity=0.779  Sum_probs=43.9

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +.+.|+||++.+.+|+.++|||+||..||..|+..  +...||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--TTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--CcCCCCCCCcccCc
Confidence            56899999999999999999999999999999965  35689999998864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.15  E-value=1.4e-11  Score=110.64  Aligned_cols=57  Identities=33%  Similarity=0.734  Sum_probs=46.9

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc-CCceeccc
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV-KNITPIYG  192 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~-~~l~~~~~  192 (422)
                      +.+.|+||++.|.+|+.+ +|||+||..||..|+..  +...||+|+.++.. ..+.+++.
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~~~~  111 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS--GNKECPTCRKKLVSKRSLRPDPN  111 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCCSGGGEEECHH
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCCCcccCCcCHH
Confidence            567999999999999987 99999999999999985  35689999999853 33444443

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.15  E-value=1.5e-11  Score=104.18  Aligned_cols=54  Identities=35%  Similarity=0.774  Sum_probs=47.2

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      +.+.|+||++.+.+|+.++|||+||..||..|+..  ....||+|+.++...++.+
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~   75 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLES   75 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--TCSBCTTTCCBCCGGGCBC
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH--CcCcCCCCCCCCCHhhccc
Confidence            35799999999999999999999999999999986  2458999999988766543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.6e-11  Score=93.55  Aligned_cols=48  Identities=33%  Similarity=0.708  Sum_probs=41.3

Q ss_pred             CccccccccCCCCCcE---EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPV---VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv---~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ....|+||++.|..+.   .++|||.||..||..|++.   ...||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCccccc
Confidence            4569999999998764   4599999999999999998   5689999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.11  E-value=1.9e-11  Score=104.63  Aligned_cols=57  Identities=39%  Similarity=0.802  Sum_probs=51.7

Q ss_pred             CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      ++...|+||++.+.++       +.++|||.||..||.+|++.   ...||+||..+...+++++|.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---CSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---CCCCCCCCCcCChhcceeeeC
Confidence            4567999999999876       88999999999999999998   679999999999999999874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.08  E-value=1.3e-10  Score=92.48  Aligned_cols=54  Identities=20%  Similarity=0.458  Sum_probs=43.3

Q ss_pred             CCCccccccccCCCC--CcEEcc--CCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          132 DGSFFDCNICLDLSR--DPVVTC--CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~--~pv~l~--CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      .++++.|+||++.+.  +++.++  |||.||..|+..++..  ....||+||+++....+
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccCCCch
Confidence            346789999999884  345555  9999999999998854  35789999999887654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.07  E-value=3.3e-11  Score=89.50  Aligned_cols=46  Identities=26%  Similarity=0.647  Sum_probs=40.3

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+.+.|+||++.|.+|++++|||+||..||..|      ...||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence            456899999999999999999999999999763      4579999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.07  E-value=5.7e-11  Score=100.03  Aligned_cols=50  Identities=28%  Similarity=0.496  Sum_probs=40.7

Q ss_pred             ccccccccCCCCCcE------------------EccCCCccChhhHHHHHHhc--CCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDPV------------------VTCCGHLFCWPCLYRWLHVH--SDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv------------------~l~CGH~FC~~CI~~wl~~~--~~~~~CPvCr~~l~~  184 (422)
                      ...|+||++.|.++.                  +++|||.||..||..|+...  .....||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            359999999997654                  78999999999999999641  125689999998754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.06  E-value=2.3e-11  Score=107.29  Aligned_cols=51  Identities=27%  Similarity=0.608  Sum_probs=44.5

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .++.+.|+||++.+.+|+.++|||+||..||..|+..  ....||+||.++..
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS--GPQNCAACVHEGIY   78 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG--SCEECHHHHHTTCC
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc--CCCCCCCCCCcccc
Confidence            3467899999999999999999999999999999986  24589999997643

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.05  E-value=5.7e-11  Score=114.40  Aligned_cols=66  Identities=17%  Similarity=0.337  Sum_probs=55.8

Q ss_pred             CCCCCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCC--CCcccccCCceecccCCCC
Q 014562          130 GNDGSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPV--CKGEVTVKNITPIYGRGNS  196 (422)
Q Consensus       130 ~~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPv--Cr~~l~~~~l~~~~~~~~~  196 (422)
                      ......+.||||++.|.+||+. .|||+||..||..|+.. .+...||+  |++.+...++.++..+.+.
T Consensus       176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~~dL~pN~~L~~l  244 (267)
T 3htk_C          176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSMRDFVRDPIMELR  244 (267)
T ss_dssp             CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred             cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence            3445779999999999999974 99999999999999986 33578999  9999999998887765543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.02  E-value=1.3e-10  Score=104.76  Aligned_cols=60  Identities=30%  Similarity=0.563  Sum_probs=51.5

Q ss_pred             CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      ..+.+.|+||++.+.+|+.++|||+||..||..|+..  ....||+|+..+...+++++...
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~   74 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPDNFA   74 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHH
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHh--CCCCCCCCccCcchhhhhhhHHH
Confidence            4567899999999999999999999999999999986  13489999999988877765443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1e-10  Score=93.26  Aligned_cols=49  Identities=31%  Similarity=0.642  Sum_probs=40.3

Q ss_pred             ccccccccCCCCC--------------cEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          135 FFDCNICLDLSRD--------------PVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       135 ~~~C~ICl~~~~~--------------pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ...|+||++.|.+              ++.+ +|||.||..||.+|+..   ..+||+||+++...+
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~~   78 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQR   78 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCBCCEEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCCcchhh
Confidence            4579999999976              3444 69999999999999998   569999999876543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.01  E-value=1.2e-10  Score=88.39  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=49.9

Q ss_pred             ccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562          135 FFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG  192 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~  192 (422)
                      .+.|+||++.+.+|+++ +|||+||..||.+|+..   ...||+++.++...+++++..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~---~~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh---CCCCcCCcCCCChhhcEECcc
Confidence            47899999999999999 99999999999999987   346999999999999998764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.93  E-value=4.3e-10  Score=114.17  Aligned_cols=51  Identities=33%  Similarity=0.860  Sum_probs=45.0

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      ...|+||++.+.+|+.++|||.||..|+..|+..  ....||+||.++....+
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCcee
Confidence            4699999999999999999999999999999984  26689999999876543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.91  E-value=2.5e-10  Score=89.48  Aligned_cols=43  Identities=35%  Similarity=0.702  Sum_probs=38.9

Q ss_pred             ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+.|+||++.+.+++.++|||. ||..|+..|       ..||+||.++..
T Consensus        24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence            4699999999999999999999 999999987       379999998753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.91  E-value=5.3e-10  Score=85.35  Aligned_cols=53  Identities=28%  Similarity=0.665  Sum_probs=44.6

Q ss_pred             CccccccccCCCCCcEEc--cCCCc-cChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          134 SFFDCNICLDLSRDPVVT--CCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l--~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      +...|.||++.+.+++.+  ||||. ||..|+..|+..   ...||+||.++.  .+..+|
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~--~~i~i~   62 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR---NKPCPVCRQPIQ--MIVLTY   62 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT---TCCCTTTCCCCC--EEEEEE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc---CCcCCCcCcchh--ceEeee
Confidence            345899999999999977  99999 899999999986   568999999884  344444

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.90  E-value=6.9e-10  Score=93.39  Aligned_cols=47  Identities=30%  Similarity=0.682  Sum_probs=40.3

Q ss_pred             ccccccccCCCCCc------------------EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDP------------------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~p------------------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ...|+||++.|.++                  +.++|||.||..||..|+..   +..||+||+++..
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF  101 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CSBCSSSCSBCCE
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---CCcCcCCCCccee
Confidence            34899999999865                  35799999999999999987   6799999998653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.81  E-value=1.7e-09  Score=82.32  Aligned_cols=52  Identities=29%  Similarity=0.740  Sum_probs=43.7

Q ss_pred             ccccccccCCCCCcEEc--cCCCc-cChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          135 FFDCNICLDLSRDPVVT--CCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l--~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      ...|+||++.+.+++++  ||||. ||..|+..|+..   ...||+||.++.  .+..+|
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~--~~i~i~   61 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA---GASCPICKKEIQ--LVIKVF   61 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT---TCBCTTTCCBCC--EEEEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh---CCcCCCcCchhh--ceEEEe
Confidence            45899999999999877  99998 999999999876   568999999884  344444

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=2.7e-09  Score=83.63  Aligned_cols=43  Identities=35%  Similarity=0.722  Sum_probs=37.8

Q ss_pred             ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ...|+||++.+.+++.++|||. ||..|+..       ...||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------CCCCccCCceecC
Confidence            4689999999999999999999 99999953       3589999998854

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=1e-08  Score=81.84  Aligned_cols=52  Identities=33%  Similarity=0.683  Sum_probs=42.7

Q ss_pred             CCccccccccCCCC--CcEEccCC-----CccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562          133 GSFFDCNICLDLSR--DPVVTCCG-----HLFCWPCLYRWLHVHSDAKECPVCKGEVTVK  185 (422)
Q Consensus       133 ~~~~~C~ICl~~~~--~pv~l~CG-----H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~  185 (422)
                      .+...|.||++.+.  +++++||+     |.||..||.+|+.. ++...||+|+..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeeecC
Confidence            34569999999884  56788996     99999999999987 2346899999988654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.70  E-value=2.1e-09  Score=92.01  Aligned_cols=46  Identities=30%  Similarity=0.696  Sum_probs=0.0

Q ss_pred             cccccccCCCCCcE------------------EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          136 FDCNICLDLSRDPV------------------VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       136 ~~C~ICl~~~~~pv------------------~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ..|+||++.|.++.                  .++|||.||..||..|+..   ...||+||+++..
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF  112 (117)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcCCCCCCeeee
Confidence            48999999997642                  2589999999999999998   6789999998754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=1.6e-08  Score=78.06  Aligned_cols=45  Identities=27%  Similarity=0.593  Sum_probs=39.1

Q ss_pred             CCccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .+...|.||++.+.+++++||||. ||..|+..       ...||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc
Confidence            345799999999999999999999 99999873       3589999998754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.62  E-value=6e-09  Score=82.83  Aligned_cols=43  Identities=28%  Similarity=0.725  Sum_probs=38.2

Q ss_pred             ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ...|+||++.+.+++.+||||. ||..|+..|       ..||+||.++..
T Consensus        18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC
Confidence            3589999999999999999999 999998765       279999998864

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.60  E-value=8e-09  Score=84.24  Aligned_cols=48  Identities=27%  Similarity=0.634  Sum_probs=39.2

Q ss_pred             CccccccccCCCCCcEEc---cCCCccChhhHHHHHHhc---C--CCCCCCC--CCcc
Q 014562          134 SFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVH---S--DAKECPV--CKGE  181 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~---~--~~~~CPv--Cr~~  181 (422)
                      +.+.|+||++.+..+..+   +|||.||..||..|+...   +  ....||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            467999999999887543   799999999999998751   2  2358999  9887

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.53  E-value=2e-08  Score=100.85  Aligned_cols=44  Identities=32%  Similarity=0.825  Sum_probs=39.5

Q ss_pred             CccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +.+.|+||++.+.+|+.++|||. ||..|+..|       ..||+||.++..
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence            45799999999999999999999 999999877       379999998753

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=4.1e-07  Score=71.58  Aligned_cols=49  Identities=24%  Similarity=0.580  Sum_probs=40.2

Q ss_pred             CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ....|.||++.+..... ..|+|.|+..||.+|++.. ....||+|+..+.
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC-SSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc-CCCCCCCCcCcCC
Confidence            34599999999986653 3899999999999999872 2378999998765

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.16  E-value=1.3e-06  Score=65.77  Aligned_cols=50  Identities=24%  Similarity=0.518  Sum_probs=40.8

Q ss_pred             CccccccccCCCCCcEEccCC--C---ccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVVTCCG--H---LFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CG--H---~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +...|.||++...++.++||.  |   .||..||.+|+.. +++..||+|+..+..
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh-CCCCccCCCCCeeec
Confidence            456999999987777778865  4   8999999999986 336789999998754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.12  E-value=9.2e-07  Score=88.06  Aligned_cols=52  Identities=29%  Similarity=0.664  Sum_probs=40.3

Q ss_pred             CCccccccccCCCCC----cE----EccCCCccChhhHHHHHHhcCC--------CCCCCCCCccccc
Q 014562          133 GSFFDCNICLDLSRD----PV----VTCCGHLFCWPCLYRWLHVHSD--------AKECPVCKGEVTV  184 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~----pv----~l~CGH~FC~~CI~~wl~~~~~--------~~~CPvCr~~l~~  184 (422)
                      +....|+||++.+.+    |.    ...|||.||..||.+|++....        ...||.|+.+++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            355699999999876    21    2479999999999999986221        1479999998763

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.90  E-value=5.9e-06  Score=68.19  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             ccccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          137 DCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       137 ~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      .|++|--.+..- .++||+|+||..|+..|.+.  ..+.||.|+.++..-..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~rVe~   52 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIEQ   52 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSEEEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeeeeEE
Confidence            699999888764 57899999999999999875  35789999998865443

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.91  E-value=0.00073  Score=64.24  Aligned_cols=50  Identities=24%  Similarity=0.551  Sum_probs=40.6

Q ss_pred             CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      ....|.||.+.....+.- .|+|.||..|+..|++. .....||.|+.....
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~-~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPH  229 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT-CSSCBCTTTCCBCCS
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh-CCCCCCCCCCCCCCC
Confidence            356999999999877643 49999999999999986 235689999887654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.53  E-value=0.00043  Score=77.14  Aligned_cols=69  Identities=12%  Similarity=0.061  Sum_probs=59.5

Q ss_pred             CCCCccccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCccc
Q 014562          131 NDGSFFDCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEE  202 (422)
Q Consensus       131 ~~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e  202 (422)
                      ..-+++.|||-++.+.+||+++.| ++|-+.+|.+|+..   ..+||+-+.++...++.||+.+...+..|..
T Consensus       887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~  956 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---DSTDPFNRMPLKLEDVTPNEELRQKILCFKK  956 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---CCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence            345789999999999999999998 69999999999987   5689999999999999998877666555543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.00  E-value=0.0028  Score=51.59  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             ccccccccCC-CCCcEE--ccCCCccChhhHHHHH
Q 014562          135 FFDCNICLDL-SRDPVV--TCCGHLFCWPCLYRWL  166 (422)
Q Consensus       135 ~~~C~ICl~~-~~~pv~--l~CGH~FC~~CI~~wl  166 (422)
                      ++.|+||.+. +.+++.  +.|+|.||..|+..+.
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4799999975 677777  8999999999999743

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=91.74  E-value=0.17  Score=40.01  Aligned_cols=45  Identities=27%  Similarity=0.673  Sum_probs=34.4

Q ss_pred             CCccccccccCCCCCcEEccC----CCccChhhHHHHHHhc--CCCCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCC----GHLFCWPCLYRWLHVH--SDAKECPV  177 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~C----GH~FC~~CI~~wl~~~--~~~~~CPv  177 (422)
                      ...+.|.+|.+.+.+.....|    +|.||..|-...++.+  .....||-
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS   63 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   63 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence            456899999999999866555    7999999999988872  22344554

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.58  E-value=0.28  Score=49.26  Aligned_cols=54  Identities=28%  Similarity=0.641  Sum_probs=41.0

Q ss_pred             ccccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCcee
Q 014562          135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      .+.|||-+..+..|+. ..|.|.-|.+-. .|+..  ......||+|.+.+...+|..
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~I  305 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLAI  305 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred             eecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence            4799999999999984 689999776542 23322  245789999999988777654

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=88.40  E-value=0.39  Score=48.07  Aligned_cols=54  Identities=20%  Similarity=0.434  Sum_probs=40.7

Q ss_pred             ccccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCcee
Q 014562          135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      .+.|||-...+..|+. ..|.|.-|.+-. .|+..  ......||+|.+.+...+|.-
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~I  271 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLIL  271 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence            4689999999999984 699999776543 23322  245789999999988777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	422
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-16
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-16
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-14
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-13
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-12
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-11
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	5e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-09
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	4e-09
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-08
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-08
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-07
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	3e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-05

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 115 EDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE 174
           +D +   ++  E       +F  C IC +  +D  +  CGHL C  CL  W       + 
Sbjct: 3   QDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG--QG 60

Query: 175 CPVCKGEVTVKNITPI 190
           CP C+ E+       +
Sbjct: 61  CPFCRCEIKGTEPIVV 76

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 9e-16
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
              +C ICL+L ++PV T C H+FC  C+ + L+      +CP+CK ++T +++  
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
             C IC  +  DPV T C HLFC  C+ R L V      CP C+      ++  
Sbjct: 24  ISCQICEHILADPVETSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTDLES 75

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 7e-13
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
           +  F  C  C   ++ P +  C H  C  CL           +CP+C+    +   TP
Sbjct: 3   EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPLGADTP 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 138 CNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
           C ICL+   +  +   C H FC+ C+ RW+  +     CP+CK  V 
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQN---PTCPLCKVPVE 51

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 137 DCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184
           +C +CL    D      +  CGH F   C+  WL  HS    CP+C+  V V
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTVVV 55

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
            +F C I L+L +DPV+   G  +    + +WL   +  K CP  +  +    +TP
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWL--DAGHKTCPKSQETLLHAGLTP 60

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 6/60 (10%)

Query: 131 NDGSFFDCNICLDLSRDPVVTC-----CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
            D     C IC +   +                  CL  WL +  +   C +C      +
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRN-TACQICGVVYNTR 60

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
            +    I  +L R+P +T  G  +    +   L         PV +  +T + + P  
Sbjct: 6   DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH--FNPVTRSPLTQEQLIPNL 61

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 138 CNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
           C I   + R PV++     +F    L +++         P+    ++++ I  I 
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT---GNDPITNEPLSIEEIVEIV 54

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 7/56 (12%)

Query: 137 DCNICLDLSRDP-----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
            C  C            +V  CGH  C  C+       +    CP C   +   N 
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA--GNCPECGTPLRKSNF 58

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
           +               C H F + C+ RWL        CP+   E   +
Sbjct: 41  NQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWEFQ 86

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 135 FFDCNICLD-LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189
              C+ C + L     +  C H+FC  C+   +        CPVC     ++++  
Sbjct: 22  LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG-----CPVCYTPAWIQDLKI 72

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 137 DCNICLDL----SRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
           +C +C++       +     CG+  C  C +R     +    CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN--GLCPACR 46

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 130 GNDGSFFDCNICLD---LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE-----CPVCK 179
           G+ GS   C +CL    + +   +  C  +FC  CL +++ +           CP   
Sbjct: 1   GSSGSS-GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 3/109 (2%)

Query: 92  GSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVT 151
           GS  +     +V +          +E      +    +       D            +T
Sbjct: 1   GSSGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGP-MVVGRLT 59

Query: 152 CCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITPIYGRGNSTR 198
            C H F   CL           + +CP CK     K  T  +G+    R
Sbjct: 60  KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFR 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	422
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.47
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.47
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.44
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.42
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.4
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.29
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.25
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.25
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.22
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.21
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.2
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.12
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.96
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.88
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.82
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.22
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	92.27

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-15  Score=122.16  Aligned_cols=60  Identities=32%  Similarity=0.839  Sum_probs=50.8

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR  193 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~  193 (422)
                      +.+.|+||++.|.+|++++|||+||..||..|+........||+||.++...++.+++.+
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l   79 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF   79 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSS
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHH
Confidence            347999999999999999999999999999999874445689999999887776655443

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=4.9e-15  Score=115.92  Aligned_cols=67  Identities=25%  Similarity=0.511  Sum_probs=58.0

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPE  201 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~  201 (422)
                      .++|.|+||++.|.+||+++|||+||..||..|+..  +...||.|+.++...++.+|+.+.+.+..|.
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~--~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~   72 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred             CccCCCcCcCchhhCceEccCCCcchHHHHHHHHHH--CCCCCCcccccCCcccccchHHHHHHHHHHH
Confidence            367999999999999999999999999999999986  3457999999999999999887766655543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=6.5e-15  Score=115.82  Aligned_cols=65  Identities=17%  Similarity=0.243  Sum_probs=55.9

Q ss_pred             CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCC
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTRE  199 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~  199 (422)
                      .+.+.|+||+++|.+|++++|||+||..||..|+..  +...||+|+.++...++.+++.+.+.+..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~--~~~~cP~c~~~l~~~~l~pN~~L~~~I~~   69 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR--VGHFNPVTRSPLTQEQLIPNLAMKEVIDA   69 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH--TCSSCTTTCCCCCGGGCEECHHHHHHHHH
T ss_pred             CccccCcCcCchhhhhcccCCcCeecHHHHHHHHhc--CCccCCCccccccccccccHHHHHHHHHH
Confidence            367899999999999999999999999999999986  34579999999998888888766554444

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=2.5e-14  Score=105.22  Aligned_cols=53  Identities=19%  Similarity=0.355  Sum_probs=48.4

Q ss_pred             cccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       136 ~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      +.|+||++.+.+|+.+ .|||+||..||.+|++.   +..||+|+.++...+++++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~---~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCGGGCEECC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh---ccCCCccCCcCCHHhceeCC
Confidence            4799999999999977 69999999999999998   56899999999999998864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=4e-14  Score=113.11  Aligned_cols=52  Identities=37%  Similarity=0.800  Sum_probs=45.8

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT  188 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~  188 (422)
                      .+.|+||++.+.+|++++|||+||+.||.+|++.  ....||+||.++...++.
T Consensus        23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          23 SISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--TCSBCTTTCCBCCGGGCB
T ss_pred             CcCCccCCcchhcceecCCCChhhHHHHHHHHhh--CCCcCcccCCCCChhhcc
Confidence            4699999999999999999999999999999986  245799999998766654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-13  Score=108.83  Aligned_cols=50  Identities=34%  Similarity=0.895  Sum_probs=43.9

Q ss_pred             ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562          135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN  186 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~  186 (422)
                      ...|+||++.+.++++++|||.||..||..|+..  +...||+||..+...+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~--~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHT--TCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHH--CcCcCCCCCcCccCCc
Confidence            3579999999999999999999999999999975  2567999999987544

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.5e-13  Score=110.90  Aligned_cols=67  Identities=19%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             CCccccccccCCCCCcEEccCCC-ccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCccc
Q 014562          133 GSFFDCNICLDLSRDPVVTCCGH-LFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEE  202 (422)
Q Consensus       133 ~~~~~C~ICl~~~~~pv~l~CGH-~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e  202 (422)
                      -++|.||||+++|.+||+++||| +||+.||..|+..   ...||+|+.++...++.++..+...+..|.+
T Consensus        20 P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~---~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~   87 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPNTELKEKIQRWLA   87 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred             cHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh---cCCcccccccccchhhcchHHHHHHHHHHHH
Confidence            46799999999999999998775 8999999999987   5689999999999999998887766655543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.1e-13  Score=107.97  Aligned_cols=52  Identities=27%  Similarity=0.742  Sum_probs=44.7

Q ss_pred             ccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562          135 FFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY  191 (422)
Q Consensus       135 ~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~  191 (422)
                      .+.|+||++.|.+|+.+ +|||+||..||..|+..     .||+|+.++...++.++.
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~-----~CP~Cr~~~~~~~l~~n~   74 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT-----GCPVCYTPAWIQDLKINR   74 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT-----BCSSSCCBCSCSSCCCCH
T ss_pred             cCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc-----cccccCCcCchhhCcccH
Confidence            47999999999999864 89999999999999965     699999988776665544

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.25  E-value=1.4e-12  Score=99.28  Aligned_cols=45  Identities=36%  Similarity=0.878  Sum_probs=40.1

Q ss_pred             cccccccCCCCCcE-EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          136 FDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       136 ~~C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      ..|+||++.+.+++ .++|||+||..||.+|++.   +.+||+||.++.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~i~   51 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh---CCcCCCCCcchH
Confidence            37999999998875 5899999999999999998   678999999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-12  Score=97.99  Aligned_cols=53  Identities=25%  Similarity=0.501  Sum_probs=41.9

Q ss_pred             ccccccccCCCCC-----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562          135 FFDCNICLDLSRD-----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP  189 (422)
Q Consensus       135 ~~~C~ICl~~~~~-----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~  189 (422)
                      +..|+||++.+..     .++++|||.||..||..|+..  ....||+||+++...++..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~~CP~CR~~i~~~~~~~   60 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRV   60 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEE
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCc--CcCCCCCCCcCcccccccc
Confidence            4699999987532     256799999999999999975  2457999999987766543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.3e-13  Score=96.77  Aligned_cols=48  Identities=25%  Similarity=0.620  Sum_probs=41.5

Q ss_pred             CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562          134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI  187 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l  187 (422)
                      +.+.|+||++.+.+|++++|||+||..||.+|      ...||+||.++....-
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~------~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSCCSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC------CCcCcCCCCcccCCCC
Confidence            56799999999999999999999999999754      4479999999876543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.20  E-value=3.7e-12  Score=93.12  Aligned_cols=47  Identities=32%  Similarity=0.718  Sum_probs=39.4

Q ss_pred             CccccccccCCCCCc---EE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562          134 SFFDCNICLDLSRDP---VV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT  183 (422)
Q Consensus       134 ~~~~C~ICl~~~~~p---v~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~  183 (422)
                      +...|+||++.|.+.   +. ++|||.||..||.+|++.   +..||+||+++.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~---~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh---CCcCCCCCCEeE
Confidence            446899999999764   33 479999999999999987   668999998763

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=8.1e-12  Score=90.14  Aligned_cols=47  Identities=21%  Similarity=0.546  Sum_probs=38.6

Q ss_pred             cccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          136 FDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       136 ~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +.|+||++.|...    +.++|||.||..||.+|+..  ....||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~--~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT--SCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh--cCCCCCccCCcCCC
Confidence            4799999998543    35689999999999999986  24579999998763

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.3e-10  Score=94.79  Aligned_cols=50  Identities=30%  Similarity=0.539  Sum_probs=39.2

Q ss_pred             cccccccCCCCCc------------------EEccCCCccChhhHHHHHHhcC--CCCCCCCCCcccccC
Q 014562          136 FDCNICLDLSRDP------------------VVTCCGHLFCWPCLYRWLHVHS--DAKECPVCKGEVTVK  185 (422)
Q Consensus       136 ~~C~ICl~~~~~p------------------v~l~CGH~FC~~CI~~wl~~~~--~~~~CPvCr~~l~~~  185 (422)
                      ..|+||++.+..+                  .+++|||.||..||..|+....  ...+||+||..+..+
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            4799999987542                  3679999999999999998621  245899999876443

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4e-10  Score=89.54  Aligned_cols=45  Identities=31%  Similarity=0.749  Sum_probs=38.1

Q ss_pred             ccccccCCCCC------------------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          137 DCNICLDLSRD------------------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       137 ~C~ICl~~~~~------------------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      .|+||++.+.+                  .+.++|||.||..||.+|++.   +.+||+||+++..
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CSBCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH---CCcCCCCCCcccc
Confidence            69999887754                  245799999999999999998   6789999998764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.82  E-value=8.4e-10  Score=81.39  Aligned_cols=52  Identities=23%  Similarity=0.464  Sum_probs=42.4

Q ss_pred             CCCccccccccCCCCCcEEccC-----CCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562          132 DGSFFDCNICLDLSRDPVVTCC-----GHLFCWPCLYRWLHVHSDAKECPVCKGEVTV  184 (422)
Q Consensus       132 ~~~~~~C~ICl~~~~~pv~l~C-----GH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~  184 (422)
                      +++...|.||++.+.++...+|     +|.||..||.+|+.. +++.+||+||+++..
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~-~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNT   59 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh-CCCCCCcccCCeeec
Confidence            3456799999999988776665     599999999999976 336689999998764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.8e-07  Score=73.09  Aligned_cols=46  Identities=24%  Similarity=0.574  Sum_probs=35.0

Q ss_pred             ccccccccCCCCC---cEEccCCCccChhhHHHHHHhc---C--CCCCCCCCCc
Q 014562          135 FFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVH---S--DAKECPVCKG  180 (422)
Q Consensus       135 ~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~---~--~~~~CPvCr~  180 (422)
                      ...|+||++.+..   +.+++|||.||..||..|++..   +  ....||.|..
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4589999998854   3456899999999999999752   1  1236998754

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.055  Score=39.83  Aligned_cols=45  Identities=27%  Similarity=0.656  Sum_probs=34.4

Q ss_pred             CccccccccCCCCCcEEccC----CCccChhhHHHHHHhc--CCCCCCCCC
Q 014562          134 SFFDCNICLDLSRDPVVTCC----GHLFCWPCLYRWLHVH--SDAKECPVC  178 (422)
Q Consensus       134 ~~~~C~ICl~~~~~pv~l~C----GH~FC~~CI~~wl~~~--~~~~~CPvC  178 (422)
                      ..+.|.+|.+.+.+.....|    +|.||..|-...++.+  ++...||.=
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG   57 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   57 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCC
Confidence            45799999999999866555    7999999999988873  234456553