Citrus Sinensis ID: 014569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccEEccccccccccccccccccccccccccHHcHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEccHHHHHHHHHcccccccHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccEEEEEEEEccccccccccccccEEEEEccEEcccccccccccEEEEEEEEEccccEEEEEEEEEcccEEEccEEEEEEccccccEEEEEccccccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccEEEEEcccHccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEcccccccEEccccccEEEEEEEEEEEEccccccHHcccEEEEEcccccEEEEEEEEEcccEEEccEEEEEEccccccEEEEEcccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mgtlkpptlptrthilkapllhstfnpqlhTLFNRCITlsstiscklrtsqdvkkkkdnvskkivfsdssppslkndevsgeveskngviglvkRLPRRVLAALSNLPLAIGEMAAIAALMALGTAieqgevpdfyfqkypednpvfgfFTWRWILTLgfdhmfsspIFLGLLVMMGLSLMactyttqipLVKVARRWSFLHSAEAIRKqefsdtlprasiQDLGVILMGAGYevflkgpslyafkglvgrfapIGVHLAMLLIMAGgtlsatgsfrgsvtvpqglnfvvgdvlgpngflstptdafsteVHVNKFYMDyydsgevkqfhsdlslfdiggkevmrktisvndplryggitiyqtdwSFSALQVLkndegpfnlamaplkvngdkklfgtflplgdvnspnvKGILFFHLVKF
Flexible Loop (DISEMBL)
mgtlkpptlptrTHILKAPLLHSTFNPQLHTLFNRCITLSStiscklrtsqdvkkkkdnvskkivfsdssppslkndevsgeveskngviglvkrlpRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAirkqefsdtlpraSIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKtisvndplrYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFlplgdvnspnVKGILFFHLVKF
Low Complexity Region (SEG)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQdvkkkkdnvskkIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPlaigemaaiaalmalgtaiEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFlgllvmmglslmACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Disordered region (IsUnstruct)
************THILKAPLLHSTFNPQLHTLFNRCITLSSTISCKL****************************************GVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLV**
Disordered Region (DISOPRED)
*******TLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSS******************************************************LPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRW****************TLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Disordered Region (DISEMBL)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLR************SKKIVFSD***************ESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Disordered Region (DISPRO)
*GTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTS********NVSKKIVFSDSSPPS**************GVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGILFFHLVKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q9XIA4	547	Cytochrome c biogenesis p	yes	no	0.936	0.722	0.698	1e-165
Q75KA9	564	Cytochrome c biogenesis p	yes	no	0.836	0.625	0.724	1e-150
Q8GTZ9	613	Cytochrome c biogenesis p	N/A	no	0.793	0.546	0.422	4e-69
Q2JXK6	478	Cytochrome c biogenesis p	yes	no	0.682	0.602	0.447	2e-67
B1WRN9	451	Cytochrome c biogenesis p	yes	no	0.720	0.674	0.409	5e-64
Q2JNP5	469	Cytochrome c biogenesis p	yes	no	0.687	0.618	0.423	5e-64
O68616	462	Cytochrome c biogenesis p	yes	no	0.720	0.658	0.405	4e-62
Q118K5	472	Cytochrome c biogenesis p	yes	no	0.760	0.680	0.400	2e-60
Q8DL16	442	Cytochrome c biogenesis p	yes	no	0.715	0.683	0.436	6e-60
Q9R6T0	456	Cytochrome c biogenesis p	yes	no	0.649	0.600	0.416	2e-59

>sp|Q9XIA4|CCS1_ARATH Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1

 Score =  580 bits (1496), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/415 (69%), Positives = 332/415 (80%), Gaps = 20/415 (4%)

Query: 15  ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSSP 71
           IL    +H    P  +    R ++L +  +CKL+  QD  ++     N++K I  SDS+P
Sbjct: 9   ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query: 72  PSLKNDEVSGEVESKNGVIG------------LVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           P     E +G+   K G  G             +K LPR+VL+ LSNLPLAI EM  IAA
Sbjct: 67  PV---TEETGDGIVKGGGNGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFTIAA 123

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++  S
Sbjct: 124 LMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAAS 183

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KG
Sbjct: 184 LMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKG 243

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           PSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF
Sbjct: 244 PSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGF 303

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
            S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+
Sbjct: 304 FSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGV 363

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGI
Sbjct: 364 TVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGI 418

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q75KA9|CCS1_ORYSJ Cytochrome c biogenesis protein CCS1, chloroplastic OS=Oryza sativa subsp. japonica GN=CCS1 PE=2 SV=1

 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/366 (72%), Positives = 301/366 (82%), Gaps = 13/366 (3%)

Query: 62  KKIVFSDSSPPSLKNDEVSGEV-------------ESKNGVIGLVKRLPRRVLAALSNLP 108
           K++VF D++PP  +     G                 +N  +GLV+RL +R L+ LSNLP
Sbjct: 67  KQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVARRKENAALGLVRRLTKRTLSLLSNLP 126

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAI EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+
Sbjct: 127 LAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPV 186

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVIL 228
           FLGLL ++  SLMACTYTTQIP+VKVARRWSF+HSA +IRKQEF+++LPRASIQDLGVIL
Sbjct: 187 FLGLLALLAASLMACTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQDLGVIL 246

Query: 229 MGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNF 288
           MG GYEVF KGPSLYAFKGL GRFAPIGVH+AM+ IMAG TLSATGSF+GSV VPQGLNF
Sbjct: 247 MGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLNF 306

Query: 289 VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTI 348
           V+GDV+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLFD+ GKEVMRKTI
Sbjct: 307 VIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRKTI 366

Query: 349 SVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS 408
            VNDPLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGT LPL +  S
Sbjct: 367 KVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLPLENSGS 426

Query: 409 PNVKGI 414
            NVKGI
Sbjct: 427 SNVKGI 432

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GTZ9|CCS1_CHLRE Cytochrome c biogenesis protein CCS1, chloroplastic OS=Chlamydomonas reinhardtii GN=CCS1 PE=1 SV=2

 Score =  262 bits (669), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 153/362 (42%), Positives = 207/362 (57%), Gaps = 27/362 (7%)

Query: 43  ISCKLRTSQDVKKKKDNVSKKIVFSDSSP-------------PSLKNDEVSGEVESKNGV 89
           + C  +  Q   KKK NV+ K+   ++ P             PS  +D  S       G 
Sbjct: 36  VRCFAKGGQPGDKKKLNVTDKLRLGNTPPTLDVLKAPRPTDAPSAIDDAPSTSGLGLGGG 95

Query: 90  IGLVKRLP---------RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKY 140
           +   + L          RR++  LS+LP AI  MA IA L  LGT I Q +  ++Y   Y
Sbjct: 96  VASPRTLVQSNAVQVAWRRLMKELSSLPRAIAIMALIAVLSGLGTFIPQNKSIEYYLVNY 155

Query: 141 PED-NPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWS 199
           P+    V GF T   ILTL  DH++++  F   + ++  SL ACTYT Q P VKVA+RW 
Sbjct: 156 PDGAEKVLGFLTGDLILTLQLDHIYTADYFYLSMGLLAASLAACTYTRQWPAVKVAQRWR 215

Query: 200 FLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHL 259
           FL   +++ KQ  ++ LP A + DLG IL+  GY+VF+K  SLY FKGL G+  PIGVH 
Sbjct: 216 FLTQPKSLLKQGRTEVLPNARVSDLGAILLQRGYQVFVKDGSLYGFKGLAGKLGPIGVHA 275

Query: 260 AMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMD 319
           A+LL + G   S  G+ +G+V  P+G +F V   L P+  +++   + S  +HVNKF +D
Sbjct: 276 ALLLCLFGTAWSGFGTLKGNVMCPEGQDFQVASFLQPSSPIASMPASASNVIHVNKFTID 335

Query: 320 YYDSGEVKQFHSDLSLFD--IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSA--LQVLK 375
           Y   G V QF+SDLSL D   GGKE+MRKTISVNDP R+ G+T+YQTDWS SA  L+VL 
Sbjct: 336 YRPDGSVAQFYSDLSLLDPAQGGKEMMRKTISVNDPFRFNGVTMYQTDWSLSAVTLRVLG 395

Query: 376 ND 377
            D
Sbjct: 396 QD 397

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q2JXK6|CCS1_SYNJA Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain JA-3-3Ab) GN=ccsB PE=3 SV=1

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/293 (44%), Positives = 177/293 (60%), Gaps = 5/293 (1%)

Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
           AIG   AIA L A+GT IEQ E   FY   YPE   +FGF TWR IL LG DH++ +  F
Sbjct: 33  AIGLFLAIALLSAVGTVIEQEETVAFYQAHYPEHPALFGFLTWRLILKLGLDHVYRTSWF 92

Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
           L LL++ G SL AC+ T Q P++KVARRWS+L    + ++  F   LP+ S+Q L   L 
Sbjct: 93  LALLILFGSSLAACSLTRQWPMLKVARRWSYLTRPHSFQRLPFWTYLPQRSLQGLPQRLR 152

Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
             GY VF  G  LYA KGL+GRF PI VH+++LLI+ G    +   F+    +P G    
Sbjct: 153 QRGYAVFQDGSRLYARKGLIGRFGPILVHVSLLLILLGAIWGSLAGFKAQALIPSGSVAA 212

Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
           +  V G       PT     ++ VN+F++DY   G VKQF+SDLS+ D GG+EV R+TIS
Sbjct: 213 IEQVTGAGDLAHLPT----WQIRVNRFWIDYAPDGRVKQFYSDLSILD-GGQEVKRQTIS 267

Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLP 402
           VN PL Y G+T+YQ DWS  ++++  N+  PF + + P+      KL+G F+P
Sbjct: 268 VNHPLSYRGVTLYQADWSIDSIRIRLNNSPPFQIPVVPVPTQAGSKLWGAFVP 320

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|B1WRN9|CCS1_CYAA5 Cytochrome c biogenesis protein CcsB OS=Cyanothece sp. (strain ATCC 51142) GN=ccsB PE=3 SV=1

 Score =  245 bits (626), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 181/305 (59%), Gaps = 1/305 (0%)

Query: 98  RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
           R+++  +++L LAI  + AIA     GT IEQGE   FY Q YPED  +FGF TW+ IL 
Sbjct: 21  RQLIKIVADLRLAIVLLLAIALFSISGTVIEQGETISFYQQNYPEDPALFGFLTWKVILI 80

Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
           LG +H++++  FL LLV+ G SL  CT+T Q P +K AR+W+F   A    K   S  L 
Sbjct: 81  LGLNHVYTTWWFLSLLVLFGTSLTTCTFTRQFPALKAARKWNFYQKARQFEKLALSTELA 140

Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
              ++ +  +L   GY+ F +  ++YA KG++G+  PI VH AML+I+ G    A   F 
Sbjct: 141 INDLKFVNNLLEQKGYKTFQENQAIYARKGIIGKIGPIVVHAAMLIILGGAIWGALTGFL 200

Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFD 337
               VP G  F V +++   G LS P       + VN+F++DY   G + QF+SDLS+ +
Sbjct: 201 AQAMVPTGSEFKVNNII-EAGPLSQPQIPKDWGIRVNRFWIDYTPDGTIDQFYSDLSVIN 259

Query: 338 IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLF 397
             G+E+  KTI VN+PLRY G+T YQTDW  + +Q   N+   F L MA L  NG+ +++
Sbjct: 260 NDGEELKHKTIYVNEPLRYHGVTFYQTDWGIAGVQAQVNNSPIFQLPMALLNTNGNGRIW 319

Query: 398 GTFLP 402
           GT++P
Sbjct: 320 GTWIP 324

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

>sp|Q2JNP5|CCS1_SYNJB Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ccsB PE=3 SV=1

 Score =  245 bits (625), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 124/293 (42%), Positives = 176/293 (60%), Gaps = 3/293 (1%)

Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
           AIG + AIA L A GT IEQ E   FY   YPE   +FGF TWR IL+LG DH++ +P F
Sbjct: 33  AIGLLLAIAVLSATGTVIEQEETAAFYQAHYPEHPALFGFLTWRVILSLGLDHVYRTPWF 92

Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
           L +L++ G SL AC+ T Q P++K ARRWS+L   ++ ++  F   LP+ S+Q L   L 
Sbjct: 93  LAILILFGSSLAACSLTRQWPMLKRARRWSYLTRPQSFQRLPFRTYLPQQSLQGLPQQLR 152

Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
             GY VF +G  LYA KGL+GR  PI VH++MLLI+ G    +   F+    +P G    
Sbjct: 153 RQGYLVFQEGHYLYARKGLIGRIGPILVHVSMLLILLGAIWGSISGFKAQELIPSGGVAS 212

Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
           +  + G           +  ++  N+F++DY   G VKQF+SDLS+ D  G+EV R+TIS
Sbjct: 213 IQHLTGAGDLARAHLPTW--QIRANRFWIDYAADGRVKQFYSDLSILD-QGQEVKRQTIS 269

Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLP 402
           VN PL Y G+T+YQ DWS  ++++  N+   F + + P++     KL+G F+P
Sbjct: 270 VNHPLSYRGVTLYQADWSIDSIRIRINNSPTFQIPVVPVRTEAGNKLWGAFVP 322

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|O68616|CCS1_SYNP2 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ccsB PE=3 SV=1

 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 182/311 (58%), Gaps = 7/311 (2%)

Query: 97  PRRV----LAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTW 152
           PR+V    L  +++L +AI  +  I+    LGT IEQG    FY + YPED  + GF +W
Sbjct: 16  PRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLSW 75

Query: 153 RWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEF 212
           + +L LG DH++++  +L LL+  G+SL+ACT+  Q+P +K AR W++   A    K   
Sbjct: 76  KVLLGLGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLAL 135

Query: 213 SDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA 272
           S  L   S+Q L   L    Y++F  G  LYA KG+VGR  PI VH+ M++ + G    A
Sbjct: 136 STELDHGSLQSLKPQLEKKRYKIFQDGEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWGA 195

Query: 273 TGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
            G F     +P G+NF V +V    G  S     +S  V+VN+F++DY  +G++ QF+SD
Sbjct: 196 FGGFMAQEMIPSGVNFKVNNVF-KAGIFSESDRPWS--VNVNRFWIDYTPTGDIDQFYSD 252

Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
           LS+ D  G+E+ RKTISVN PLRY GIT YQT WS   +QV  N+   F L  A +    
Sbjct: 253 LSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTEN 312

Query: 393 DKKLFGTFLPL 403
             KL+G+++P+
Sbjct: 313 GAKLWGSWVPI 323

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q118K5|CCS1_TRIEI Cytochrome c biogenesis protein CcsB OS=Trichodesmium erythraeum (strain IMS101) GN=ccsB PE=3 SV=1

 Score =  233 bits (594), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 187/322 (58%), Gaps = 1/322 (0%)

Query: 82  EVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYP 141
           E   KN +I  ++   R +L  L++L LAI  +  IA     GT IEQGE   FY + YP
Sbjct: 4   EDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYP 63

Query: 142 EDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFL 201
           E   +FGF TW+ IL L  DH++ +  FL +L++ G SL ACT+T Q+P +K A RW F 
Sbjct: 64  EKPALFGFLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFY 123

Query: 202 HSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAM 261
           +  +  +    S  +  AS+  L  IL   GY+   +G  LY  KG++G+  PI VH +M
Sbjct: 124 NKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVHASM 183

Query: 262 LLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYY 321
           L+I+AG  + +   F G   VP G  F V +++   G  +      +  V VN+F++DY 
Sbjct: 184 LIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDA-GIFAKSQIPKNWSVRVNRFWIDYT 242

Query: 322 DSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPF 381
            SG + QF+SDLS+ D  G+EV RKTI VN P+RY G+T+YQ DW+ +A++V  N    F
Sbjct: 243 PSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVF 302

Query: 382 NLAMAPLKVNGDKKLFGTFLPL 403
            L MA L   G  K++GT++P+
Sbjct: 303 RLPMAQLNTEGGGKIWGTWVPI 324

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q8DL16|CCS1_THEEB Cytochrome c biogenesis protein CcsB OS=Thermosynechococcus elongatus (strain BP-1) GN=ccsB PE=3 SV=1

 Score =  231 bits (590), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/305 (43%), Positives = 176/305 (57%), Gaps = 3/305 (0%)

Query: 98  RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
           RRVLA L +L LAI  +  IA     GT IEQG+   FY   YPE+  +FGF +WR +L 
Sbjct: 8   RRVLALLGDLRLAILLLLVIAIASMAGTVIEQGQSLSFYQANYPENPALFGFLSWRVLLA 67

Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
           LG DH++ +P +L LLV+ G SL ACT T Q+P +  A+RW +        K   S T+P
Sbjct: 68  LGLDHVYRTPWYLTLLVLFGASLTACTLTRQVPALTTAQRWHYYQEPRQFTKLALSTTIP 127

Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
           + S+  L   L   GY V+     LYA KGLVGR  PI VH +MLLI+ GG L A   F 
Sbjct: 128 QGSLTALATALRAKGYRVWQTDTQLYARKGLVGRLGPIVVHASMLLILLGGILGALTGFM 187

Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFD 337
               +P G    +  ++        P D     V VN+F++DY D+GE+ QF+SDLS+ D
Sbjct: 188 AQELIPSGETVHLQHIVEAGPLARIPQD---WSVKVNRFWIDYTDAGEIDQFYSDLSIQD 244

Query: 338 IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLF 397
             G+EV R TI VN PLRYGG+++YQ DW  +A++   N      L MAPL   G  +L+
Sbjct: 245 AKGQEVKRGTIHVNRPLRYGGVSLYQADWGIAAIRFRLNRSPVLQLPMAPLDTGGKGRLW 304

Query: 398 GTFLP 402
           GT+LP
Sbjct: 305 GTWLP 309

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q9R6T0|CCS1_SYNP6 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ccsB PE=3 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/281 (41%), Positives = 162/281 (57%), Gaps = 7/281 (2%)

Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
           GT IEQG+   FY + YP D  +FGF +WRWIL+LG DH++ +  FLGLL++ G SL AC
Sbjct: 46  GTVIEQGQSLAFYQENYPTDPALFGFLSWRWILSLGLDHVYRAGWFLGLLILFGASLTAC 105

Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
           T+  Q P ++ A+RW F        K   S +LP+  +  L  +L+   Y +F     LY
Sbjct: 106 TFRRQWPALRAAQRWQFYQEPRQFTKLALSASLPQGKLDSLEPLLLQRRYRLFRADDVLY 165

Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
           A +GL GR  PI VH  ML+++ G    + G F     +P G  F V +++  GP     
Sbjct: 166 ARRGLAGRVGPILVHAGMLVVLGGAIWGSLGGFYAQEMIPSGETFQVRNIVDAGPWSGSR 225

Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
            P D     V VN+F++DY   G + QF+SDLS+ D  G+E  R+TI VN PLRYGG+T 
Sbjct: 226 IPQD---WAVKVNRFWIDYAPDGRIDQFYSDLSVVDREGQEQDRQTIHVNQPLRYGGLTF 282

Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLP 402
           YQ DW+ +A QV  N+     L MA L   G  +++GTF+P
Sbjct: 283 YQADWAIAAAQVRLNNSPVLQLPMAQLPAAG--RIWGTFVP 321

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
255556127	556	conserved hypothetical protein [Ricinus	0.976	0.741	0.758	0.0
225428564	557	PREDICTED: cytochrome c biogenesis prote	0.973	0.737	0.729	1e-178
356538823	563	PREDICTED: cytochrome c biogenesis prote	0.964	0.722	0.721	1e-176
449506421	560	PREDICTED: cytochrome c biogenesis prote	0.954	0.719	0.737	1e-175
449438715	557	PREDICTED: cytochrome c biogenesis prote	0.954	0.723	0.713	1e-168
297847228	550	cytochrome c biogenesis protein family [	0.940	0.721	0.698	1e-164
18402618	547	cytochrome c biogenesis protein CCS1 [Ar	0.936	0.722	0.698	1e-163
242032857	561	hypothetical protein SORBIDRAFT_01g00688	0.836	0.629	0.737	1e-156
226528547	549	uncharacterized protein LOC100275725 [Ze	0.836	0.642	0.736	1e-155
224031199	549	unknown [Zea mays] gi|414873066|tpg|DAA5	0.836	0.642	0.733	1e-154

>gi|255556127|ref|XP_002519098.1| conserved hypothetical protein [Ricinus communis] gi|223541761|gb|EEF43309.1| conserved hypothetical protein [Ricinus communis]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/426 (75%), Positives = 368/426 (86%), Gaps = 14/426 (3%)

Query: 1   MGTLKP--PTLPTRTHILK-APLLHST--FNPQLHTLFNRCITLSSTISCKLRTSQDVKK 55
           M TLKP  P+ P +TH +   P ++ST   NPQ+H L NR   LS ++SCKL+TS++V+ 
Sbjct: 1   MKTLKPTKPS-PLKTHFINFHPFINSTIKLNPQIHILCNRR-ALSLSVSCKLKTSKEVEN 58

Query: 56  KKDNVSKKIVFSDSSPPSLKNDEV--SGEVESK-----NGVIGLVKRLPRRVLAALSNLP 108
           K  NVS+KI+ S+S+PP  +      +GE+  K      G +   KRLPR+VL+ LSNLP
Sbjct: 59  KDKNVSRKILLSNSAPPVSEEGGAGNNGEIPDKAAKGGGGPLRFFKRLPRKVLSVLSNLP 118

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAIGEM AIA LMALGT I+QG+ P+ YFQ YPE+NPV GFFTWRWILTLGFDHMFSSP+
Sbjct: 119 LAIGEMFAIAGLMALGTVIDQGQAPEIYFQNYPEENPVLGFFTWRWILTLGFDHMFSSPV 178

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVIL 228
           FLG+L ++GLSLMACTYTTQIPLVKVARRW+FLHSAEAIRKQEF+DTLP+ASIQD+GVIL
Sbjct: 179 FLGMLALLGLSLMACTYTTQIPLVKVARRWNFLHSAEAIRKQEFADTLPQASIQDVGVIL 238

Query: 229 MGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNF 288
           MGAGYEVFLKGPSLYAFKGL GRFAPIGVHLAMLLIMAG TL+ATGSFRGSVTVPQGLNF
Sbjct: 239 MGAGYEVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMAGATLTATGSFRGSVTVPQGLNF 298

Query: 289 VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTI 348
           VVGDVLGP+GFLSTPT+AF+TEVHVNKFYMDYYDSGEV QF+SDLSL+DI GKEV+RKTI
Sbjct: 299 VVGDVLGPSGFLSTPTEAFNTEVHVNKFYMDYYDSGEVSQFYSDLSLYDIDGKEVLRKTI 358

Query: 349 SVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS 408
           SVN+PLRYGG TIYQTDWSFSALQ+ KNDEGPFNLAMAPLK+NGDKKLFGTFLP+GDVNS
Sbjct: 359 SVNNPLRYGGFTIYQTDWSFSALQIRKNDEGPFNLAMAPLKINGDKKLFGTFLPVGDVNS 418

Query: 409 PNVKGI 414
           PNVKGI
Sbjct: 419 PNVKGI 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428564|ref|XP_002281077.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera] gi|297741415|emb|CBI32546.3| unnamed protein product [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/429 (72%), Positives = 361/429 (84%), Gaps = 18/429 (4%)

Query: 1   MGTLKPPTLPTRTHILKAPLLHSTFNPQLH----TLFNRCIT--LSSTISCKLRTSQDVK 54
           M TLKP    ++T  LK+PLL S+F PQ       + + C +  LS +I+CKL+TS+D K
Sbjct: 1   MYTLKPSF--SKTLFLKSPLLRSSFKPQFFPYTTQISSPCSSTPLSFSITCKLKTSEDGK 58

Query: 55  KKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNG---------VIGLVKRLPRRVLAALS 105
             K +++KKIV S+ +P   ++   +GE + K             GLVKR PR+VL+ LS
Sbjct: 59  SSK-SLAKKIVLSEGAPAVSEDGAGNGEAQPKPASKGGGGGGGFGGLVKRFPRKVLSRLS 117

Query: 106 NLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFS 165
           NLPLAIGEM  +AALMALGTAI+QGE PD+YFQK+PEDNPV GFFTWRW+LTLGFDHMFS
Sbjct: 118 NLPLAIGEMFTVAALMALGTAIDQGEAPDYYFQKFPEDNPVLGFFTWRWVLTLGFDHMFS 177

Query: 166 SPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLG 225
           SPIFLG+L ++  SLMACTYTTQIPLVKVARRW+FLHSAEAIRKQEFS++LP+AS++DLG
Sbjct: 178 SPIFLGMLALLATSLMACTYTTQIPLVKVARRWNFLHSAEAIRKQEFSESLPKASVRDLG 237

Query: 226 VILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQG 285
           V+LMGAGYEVFLKGPSLYAFKGL GRFAPIGVHLAMLLIM GGTLSATGSFRGSVTVPQG
Sbjct: 238 VVLMGAGYEVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMVGGTLSATGSFRGSVTVPQG 297

Query: 286 LNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMR 345
           LNFV+GDVL P+GFLSTPT AF TEVHVN+FYMDYYDSGEV QFH+DLSLFD+ GKEVMR
Sbjct: 298 LNFVMGDVLSPSGFLSTPTKAFDTEVHVNRFYMDYYDSGEVLQFHTDLSLFDLNGKEVMR 357

Query: 346 KTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGD 405
           KTISVNDPLR+ GITIYQTDWSFSALQ+ K+DEGPFNLAMAPLK+NGDKKLFGTFLP+GD
Sbjct: 358 KTISVNDPLRFDGITIYQTDWSFSALQIRKDDEGPFNLAMAPLKLNGDKKLFGTFLPVGD 417

Query: 406 VNSPNVKGI 414
            +SPNVKGI
Sbjct: 418 SDSPNVKGI 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538823|ref|XP_003537900.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/420 (72%), Positives = 354/420 (84%), Gaps = 13/420 (3%)

Query: 7   PTLPTRTHILKAPLLHS--TFNPQLHTLF--NRCITLSSTISCKLRTSQDVKKKKDNVSK 62
           P LP +TH LK P+ H    F P  ++     R  TL  TISCKL+ SQ++K K  +VS+
Sbjct: 14  PCLP-QTHFLKVPIFHPFFRFKPFSNSSHGAKRAHTLPLTISCKLKNSQEMKNKGKSVSQ 72

Query: 63  KIVFSDSSPPSLKNDE--------VSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEM 114
           KIV S++SPP L  D+        V    + K G+ G+   L R+ L  LSNLPLAIGEM
Sbjct: 73  KIVLSEASPPPLTEDDKNNGDSKDVPESSKKKGGLSGVANMLRRKTLQILSNLPLAIGEM 132

Query: 115 AAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLV 174
            A+A+LMALGT I+QGE PDFYFQKYPED+PVFGFFTWRW+LTLGFDHMF+SPIFLG+L 
Sbjct: 133 FAVASLMALGTFIDQGEAPDFYFQKYPEDHPVFGFFTWRWVLTLGFDHMFTSPIFLGVLA 192

Query: 175 MMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYE 234
           ++G SLMACTYTTQ+PL+KV+RRWSFLHSAEAIRKQEFS++LPRASIQD+G ILMGAGYE
Sbjct: 193 LLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIRKQEFSESLPRASIQDVGTILMGAGYE 252

Query: 235 VFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL 294
           VFLKGPSLYAF+GL GR AP+GVH+A+LLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL
Sbjct: 253 VFLKGPSLYAFQGLAGRLAPVGVHIALLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL 312

Query: 295 GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPL 354
            P GFLS+PTDAF+TE+HVNKF MDYY+SGEV QFH+DLSL ++ GKEVMRKTISVNDPL
Sbjct: 313 APFGFLSSPTDAFNTEIHVNKFSMDYYESGEVSQFHTDLSLRNMDGKEVMRKTISVNDPL 372

Query: 355 RYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           RYGGITIYQTDWS SALQ+LK++EGP+NLAMAPL++NGDKKLFGTFLP+GD+NSP+VKGI
Sbjct: 373 RYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGI 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506421|ref|XP_004162745.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Cucumis sativus]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 306/415 (73%), Positives = 352/415 (84%), Gaps = 12/415 (2%)

Query: 7   PTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVF 66
           P+L ++  +LK   LHS F+ Q+ TL    I  S +++CK + SQD  KK  N S KIV 
Sbjct: 21  PSL-SKPFLLKTSFLHSVFSHQI-TLRTAQIR-SFSVTCKNKASQD--KKLKNASNKIVL 75

Query: 67  SDSSPP-----SLKNDEVSGEVESKNGV--IGLVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           S+++PP     S K+     EV+  NG   + LVKRLP+R+L ALSNLPLAIGEM  IAA
Sbjct: 76  SEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLAIGEMFTIAA 135

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT I+QGE PDFYFQKYPEDNP++GFF WRWILTLGFDHM+SS IFLG+L ++G+S
Sbjct: 136 LMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLGMLALLGIS 195

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRW+FL S E IRK E SD LPRAS+QDLGV+LMGAGYEVF+KG
Sbjct: 196 LMACTYTTQIPLVKVARRWNFLQSGETIRKLECSDILPRASVQDLGVVLMGAGYEVFIKG 255

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           P+LYAFKGL GRFAPIGVHLAMLLIMAG TLSATGSFRGSVTVPQGLNFVVGDVL P+GF
Sbjct: 256 PTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVGDVLNPSGF 315

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
           L+ PT+AF+TEVHVNKFYM+YYDSGE+KQF+SDLSLFD+ GKEVMRKTISVN+PLRYGG 
Sbjct: 316 LAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVNNPLRYGGF 375

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           TIYQTDW FSALQ+LKNDEGPFNLA+APLK+NGDKKL+GTFLP+GDVNSP+VKGI
Sbjct: 376 TIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDVKGI 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438715|ref|XP_004137133.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 347/422 (82%), Gaps = 19/422 (4%)

Query: 7   PTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVF 66
           P+L ++  +LK   LHS F+ Q+ TL    I  S +++CK + SQD  KK  N S KIV 
Sbjct: 11  PSL-SKPFLLKTSFLHSVFSHQI-TLRTAQIR-SFSVTCKNKASQD--KKLKNASNKIVL 65

Query: 67  SDSSPP-----SLKNDEVSGEVESKNGV--IGLVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           S+++PP     S K+     EV+  NG   + LVKRLP+R+L ALSNLPLAIGEM  IAA
Sbjct: 66  SEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLAIGEMFTIAA 125

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT I+QGE PDFYFQKYPEDNP++GFF WRWILTLGFDHM+SS IFLG+L ++G+S
Sbjct: 126 LMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLGMLALLGIS 185

Query: 180 LMACTYTTQIPLVKVA-------RRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAG 232
           LMACTYTTQIPLV            W+FL S E IRK E SD LPRAS+QDLGV+LMGAG
Sbjct: 186 LMACTYTTQIPLVFFFFLFLSLKHTWNFLQSGETIRKLECSDILPRASVQDLGVVLMGAG 245

Query: 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGD 292
           YEVF+KGP+LYAFKGL GRFAPIGVHLAMLLIMAG TLSATGSFRGSVTVPQGLNFVVGD
Sbjct: 246 YEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVGD 305

Query: 293 VLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352
           VL P+GFL+ PT+AF+TEVHVNKFYM+YYDSGE+KQF+SDLSLFD+ GKEVMRKTISVN+
Sbjct: 306 VLNPSGFLAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVNN 365

Query: 353 PLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVK 412
           PLRYGG TIYQTDW FSALQ+LKNDEGPFNLA+APLK+NGDKKL+GTFLP+GDVNSP+VK
Sbjct: 366 PLRYGGFTIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDVK 425

Query: 413 GI 414
           GI
Sbjct: 426 GI 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847228|ref|XP_002891495.1| cytochrome c biogenesis protein family [Arabidopsis lyrata subsp. lyrata] gi|297337337|gb|EFH67754.1| cytochrome c biogenesis protein family [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/418 (69%), Positives = 333/418 (79%), Gaps = 21/418 (5%)

Query: 14  HILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSS 70
           +IL    LHS      +    R ++L  T +CKL+  Q+  ++     N++K I  SDS+
Sbjct: 8   NILHFSKLHSFSRSSSYFYRTRNVSL--TTNCKLQKPQNGNQRSSSNGNLTKTISLSDSA 65

Query: 71  PPSLKNDEVSGEVESKNGVIG--------------LVKRLPRRVLAALSNLPLAIGEMAA 116
           PP    +E  GEV    G  G               +K LPR+VL+ LSNLPLAI EM  
Sbjct: 66  PPV--TEETVGEVSGDGGGNGGGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFT 123

Query: 117 IAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMM 176
           IAALMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++
Sbjct: 124 IAALMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLL 183

Query: 177 GLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVF 236
             SLMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF
Sbjct: 184 AASLMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVF 243

Query: 237 LKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGP 296
           +KGPSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P
Sbjct: 244 MKGPSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAP 303

Query: 297 NGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRY 356
            GF S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRY
Sbjct: 304 VGFFSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRY 363

Query: 357 GGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           GG+T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGI
Sbjct: 364 GGVTVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGI 421

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402618|ref|NP_564544.1| cytochrome c biogenesis protein CCS1 [Arabidopsis thaliana] gi|75215676|sp|Q9XIA4.1|CCS1_ARATH RecName: Full=Cytochrome c biogenesis protein CCS1, chloroplastic; AltName: Full=C-type cytochrome synthesis protein 1; Flags: Precursor gi|5430762|gb|AAD43162.1|AC007504_17 Similar to CCS1 [Arabidopsis thaliana] gi|26449682|dbj|BAC41965.1| unknown protein [Arabidopsis thaliana] gi|332194302|gb|AEE32423.1| cytochrome c biogenesis protein CCS1 [Arabidopsis thaliana]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/415 (69%), Positives = 332/415 (80%), Gaps = 20/415 (4%)

Query: 15  ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSSP 71
           IL    +H    P  +    R ++L +  +CKL+  QD  ++     N++K I  SDS+P
Sbjct: 9   ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query: 72  PSLKNDEVSGEVESKNGVIG------------LVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           P     E +G+   K G  G             +K LPR+VL+ LSNLPLAI EM  IAA
Sbjct: 67  PV---TEETGDGIVKGGGNGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFTIAA 123

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++  S
Sbjct: 124 LMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAAS 183

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KG
Sbjct: 184 LMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKG 243

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           PSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF
Sbjct: 244 PSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGF 303

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
            S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+
Sbjct: 304 FSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGV 363

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGI
Sbjct: 364 TVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGI 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032857|ref|XP_002463823.1| hypothetical protein SORBIDRAFT_01g006880 [Sorghum bicolor] gi|241917677|gb|EER90821.1| hypothetical protein SORBIDRAFT_01g006880 [Sorghum bicolor]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/366 (73%), Positives = 305/366 (83%), Gaps = 13/366 (3%)

Query: 62  KKIVFSDSSPPSLKN-----DEVSGEVESK------NGVIGLVKRLPRRVLAALSNLPLA 110
           K+IVF D++PP  +      ++  GE  +       N  + L++R  +R LA LSNLPLA
Sbjct: 64  KQIVFFDAAPPVSQEGGAAVEKAGGEKPTTKVGSGGNAALALLRRATKRTLAVLSNLPLA 123

Query: 111 IGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFL 170
           I EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+FL
Sbjct: 124 ISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPVFL 183

Query: 171 GLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMG 230
           GLL ++  SLMACTYTTQ+P+VKVARRWSF HS E IRKQEF+D+LPRAS+QDLGVILMG
Sbjct: 184 GLLALLATSLMACTYTTQLPMVKVARRWSFTHSGERIRKQEFADSLPRASVQDLGVILMG 243

Query: 231 AGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVV 290
           AGYEVF KGPSLYAFKGL GR+APIGVHLAML IMAG TLSATGSF+GSV VPQGLNFV+
Sbjct: 244 AGYEVFTKGPSLYAFKGLAGRYAPIGVHLAMLFIMAGATLSATGSFKGSVDVPQGLNFVI 303

Query: 291 GDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISV 350
           GDV+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLF++ GKEVMRKTI V
Sbjct: 304 GDVMKPRGVLSVAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFNLDGKEVMRKTIKV 363

Query: 351 NDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS-- 408
           NDPLRYGGITIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGTFLPL DV+S  
Sbjct: 364 NDPLRYGGITIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTFLPLEDVDSSN 423

Query: 409 PNVKGI 414
           PNVKGI
Sbjct: 424 PNVKGI 429

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528547|ref|NP_001143217.1| uncharacterized protein LOC100275725 [Zea mays] gi|195616036|gb|ACG29848.1| hypothetical protein [Zea mays]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/364 (73%), Positives = 303/364 (83%), Gaps = 11/364 (3%)

Query: 62  KKIVFSDSSPPSLKN---------DEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIG 112
           K+IVF D++PP  +           E   +V S N  + L++R  +R L+ LSNLPLAI 
Sbjct: 54  KQIVFFDAAPPVSQEGGGAVKKAGSEKLTQVGSGNAALALLRRATKRTLSVLSNLPLAIS 113

Query: 113 EMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGL 172
           EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+FLGL
Sbjct: 114 EMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPVFLGL 173

Query: 173 LVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAG 232
           L ++  SLMACTYTTQ+P+VKVARRWSF HS E IRKQEF+D+LP+ASIQDLGVILMGAG
Sbjct: 174 LALLATSLMACTYTTQLPMVKVARRWSFTHSGERIRKQEFADSLPQASIQDLGVILMGAG 233

Query: 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGD 292
           YEVF KGPSLYAFKGL GR+APIGVHLAML IMAG TLSATGSF+GSV VPQGLNFV+GD
Sbjct: 234 YEVFTKGPSLYAFKGLAGRYAPIGVHLAMLFIMAGATLSATGSFKGSVDVPQGLNFVIGD 293

Query: 293 VLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352
           V+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLF++ GKEVMRKTI VND
Sbjct: 294 VMKPRGVLSVAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFNLDGKEVMRKTIKVND 353

Query: 353 PLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS--PN 410
           PLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGTFLPL D +S  PN
Sbjct: 354 PLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTFLPLEDSDSSNPN 413

Query: 411 VKGI 414
           VKGI
Sbjct: 414 VKGI 417

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224031199|gb|ACN34675.1| unknown [Zea mays] gi|414873066|tpg|DAA51623.1| TPA: hypothetical protein ZEAMMB73_446152 [Zea mays]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/364 (73%), Positives = 302/364 (82%), Gaps = 11/364 (3%)

Query: 62  KKIVFSDSSPPSLKN---------DEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIG 112
           K+IVF D++PP  +           E   +V S N  + L++R  +  L+ LSNLPLAI 
Sbjct: 54  KQIVFFDAAPPVSQEGGGAVKKAGSEKLTQVGSGNAALALLRRATKMTLSVLSNLPLAIS 113

Query: 113 EMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGL 172
           EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+FLGL
Sbjct: 114 EMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPVFLGL 173

Query: 173 LVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAG 232
           L ++  SLMACTYTTQ+P+VKVARRWSF HS E IRKQEF+D+LP+ASIQDLGVILMGAG
Sbjct: 174 LALLATSLMACTYTTQLPMVKVARRWSFTHSGERIRKQEFADSLPQASIQDLGVILMGAG 233

Query: 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGD 292
           YEVF KGPSLYAFKGL GR+APIGVHLAML IMAG TLSATGSF+GSV VPQGLNFV+GD
Sbjct: 234 YEVFTKGPSLYAFKGLAGRYAPIGVHLAMLFIMAGATLSATGSFKGSVDVPQGLNFVIGD 293

Query: 293 VLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352
           V+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLF++ GKEVMRKTI VND
Sbjct: 294 VMKPRGVLSVAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFNLDGKEVMRKTIKVND 353

Query: 353 PLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS--PN 410
           PLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGTFLPL D +S  PN
Sbjct: 354 PLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTFLPLEDSDSSNPN 413

Query: 411 VKGI 414
           VKGI
Sbjct: 414 VKGI 417

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:2010267	547	AT1G49380 "AT1G49380" [Arabido	0.940	0.725	0.639	1.1e-135
UNIPROTKB|Q74FJ5	454	GSU0613 "ResB-like family cyto	0.279	0.259	0.325	9.6e-08
TIGR_CMR|GSU_0613	454	GSU_0613 "ResB-like family pro	0.279	0.259	0.325	9.6e-08

TAIR|locus:2010267 AT1G49380 "AT1G49380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
 Identities = 264/413 (63%), Positives = 302/413 (73%)

Query:    15 ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQXXXXXXXXX---XXXIVFSDSSP 71
             IL    +H    P  +    R ++L +  +CKL+  Q               I  SDS+P
Sbjct:     9 ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query:    72 PSLKN--DEV--------SGEVESKNGVIGLVKRLPRRVLAALSNLPXXXXXXXXXXXXX 121
             P  +   D +         G  + + G +G +K LPR+VL+ LSNLP             
Sbjct:    67 PVTEETGDGIVKGGGNGGGGGGDGRGG-LGFLKILPRKVLSVLSNLPLAITEMFTIAALM 125

Query:   122 XXXXXXEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFXXXXXXXXXXXX 181
                   EQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIF            
Sbjct:   126 ALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAASLM 185

Query:   182 ACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPS 241
             ACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KGPS
Sbjct:   186 ACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKGPS 245

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             LYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF S
Sbjct:   246 LYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGFFS 305

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
              PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+T+
Sbjct:   306 IPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGVTV 365

Query:   362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
             YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGI
Sbjct:   366 YQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGI 418

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q74FJ5 GSU0613 "ResB-like family cytochrome c biogenesis protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 151 (58.2 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 41/126 (32%), Positives = 65/126 (51%)

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             L+A K    R     VHL++++I  G  L +   ++  V + +G       V+   G   
Sbjct:   160 LFAQKSPYSRLGVYVVHLSIVIIFIGALLGSFFGYKAYVNIVEGSG--ASTVMSRKG--- 214

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVM-RKTISVNDPLRYGGIT 360
              P D   T V    F + +YD+G  K+F S L++ D GGK V+ ++ + VN+PL Y GIT
Sbjct:   215 VPIDLGFT-VKCEDFSVSFYDTGAPKEFKSLLTVID-GGKVVIDKRPVIVNEPLTYKGIT 272

Query:   361 IYQTDW 366
              YQ+ +
Sbjct:   273 FYQSSY 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0613 GSU_0613 "ResB-like family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 151 (58.2 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 41/126 (32%), Positives = 65/126 (51%)

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             L+A K    R     VHL++++I  G  L +   ++  V + +G       V+   G   
Sbjct:   160 LFAQKSPYSRLGVYVVHLSIVIIFIGALLGSFFGYKAYVNIVEGSG--ASTVMSRKG--- 214

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVM-RKTISVNDPLRYGGIT 360
              P D   T V    F + +YD+G  K+F S L++ D GGK V+ ++ + VN+PL Y GIT
Sbjct:   215 VPIDLGFT-VKCEDFSVSFYDTGAPKEFKSLLTVID-GGKVVIDKRPVIVNEPLTYKGIT 272

Query:   361 IYQTDW 366
              YQ+ +
Sbjct:   273 FYQSSY 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      422       379   0.00089  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  237 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.67u 0.15s 27.82t   Elapsed:  00:00:02
  Total cpu time:  27.67u 0.15s 27.82t   Elapsed:  00:00:02
  Start:  Sat May 11 06:03:42 2013   End:  Sat May 11 06:03:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75KA9	CCS1_ORYSJ	No assigned EC number	0.7240	0.8364	0.6258	yes	no
Q9XIA4	CCS1_ARATH	No assigned EC number	0.6987	0.9360	0.7221	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
pfam05140	437	pfam05140, ResB, ResB-like family	4e-93
CHL00177	426	CHL00177, ccs1, c-type cytochrome biogenensis prot	5e-82
COG1333	478	COG1333, ResB, ResB protein required for cytochrom	2e-43

>gnl|CDD|218462 pfam05140, ResB, ResB-like family

 Score =  286 bits (735), Expect = 4e-93
 Identities = 116/317 (36%), Positives = 161/317 (50%), Gaps = 31/317 (9%)

Query: 107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSS 166
           L LAI  +  +A    +GT I Q E   FY + Y       G F    I  LG   ++SS
Sbjct: 1   LRLAISLLLLLAIASIIGTVIPQREPVAFYIENY-------GPFLGPIIDRLGLFDVYSS 53

Query: 167 PIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPR----ASIQ 222
             FL LL ++ +SL+ C+   Q PL+K  RRW       ++ +   S  L       +++
Sbjct: 54  WWFLALLALLFVSLIGCSLRRQPPLLKALRRWPVRTPERSLSRLPLSAELTTPAPEEALE 113

Query: 223 DLGVILMGAGYEVFLKGP-SLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVT 281
            L  +L   GY VF +G  SLYA KG +GR  P+ VHL ++LI+ G  L +   FRG V 
Sbjct: 114 QLAALLKKRGYRVFEEGGRSLYAEKGRLGRLGPLVVHLGLILILIGAALGSLFGFRGQVI 173

Query: 282 VPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGK 341
           VP+G  F +       G L  P   FS  + +N F ++YY +G+ KQF SDL+L D GGK
Sbjct: 174 VPEGETFDIAYDSFRAGALVQPLP-FS--IRLNDFTIEYYPTGQPKQFASDLTLLDPGGK 230

Query: 342 EVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFN-----------LAMAPLKV 390
           EV RKTI VN PLRYGG+TIYQ  W ++  + + +  G              L    L +
Sbjct: 231 EVKRKTIRVNHPLRYGGVTIYQASWGYAPGETVTDTSGLVVFDTETVPFLPQLPGNLLSL 290

Query: 391 NGDK-----KLFGTFLP 402
            G+K     + +G FLP
Sbjct: 291 GGEKVGYQLEFWGFFLP 307

This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein. Length = 437

>gnl|CDD|214387 CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated

 Score =  258 bits (660), Expect = 5e-82
 Identities = 117/302 (38%), Positives = 176/302 (58%), Gaps = 6/302 (1%)

Query: 94  KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
           K + +++L  L+NL  AI  +  IA    +GT IEQ +  +FY   YP  NP+FGF +W+
Sbjct: 1   KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWK 60

Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
            IL LG DH++ +  FL LL++ GLSL+ CT   Q+P +K+ARRW F  +    +K + S
Sbjct: 61  IILKLGLDHIYKTWWFLSLLLLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQIS 120

Query: 214 DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
             L + S+  L   L    Y +F +G  +YA+KGL+GR API VH +M+LI+ G  L A 
Sbjct: 121 TNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIAPIIVHFSMILILIGSILGAL 180

Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLS-TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
             F     +P+   F + +++  +G LS  P         VN F++ Y     +KQF+SD
Sbjct: 181 SGFTAQEIIPKTEIFHIQNIIS-SGQLSKIP----QESARVNDFWITYTPEKSIKQFYSD 235

Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
           LS+ +  GKE+ RKTISVN PL+Y G+TIYQTDW+   L++   +     + +  ++ N 
Sbjct: 236 LSILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENNN 295

Query: 393 DK 394
           +K
Sbjct: 296 NK 297

Length = 426

>gnl|CDD|224252 COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]

 Score =  157 bits (400), Expect = 2e-43
 Identities = 86/294 (29%), Positives = 130/294 (44%), Gaps = 22/294 (7%)

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAI  +  +A     GT + Q        Q YP+    FG    +WI  LG   ++SS  
Sbjct: 3   LAIALLLLLAIASIPGTVLPQRG----LNQPYPDYYAEFGGLWGQWIDQLGLFDVYSSWW 58

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL-----PRASIQD 223
           FL ++V++G+SL+ C+      L + A R   + +   + +   S  L     P A    
Sbjct: 59  FLAIIVLLGVSLVGCSLPRFPALYR-ALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAK 117

Query: 224 LGVILMGAGYEVFLKGP-SLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA--TGSFRGSV 280
           +  +L G GY++  +G  S+ A KG   R+ PI  H+A+L+I+ G  L     G      
Sbjct: 118 IEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIFHIALLIILVGALLDFFYEG-MVVGE 176

Query: 281 TVPQGLNFVVGDVLGPNGFLSTPTDAFSTE------VHVNKFYMDYYDSGEVKQFHSDLS 334
            VP G           + F + PT            V VN+F +DY  +G+   F SD+S
Sbjct: 177 IVPDGETNCSALPAANDKFRAGPT--ADGTILLPFCVRVNRFGIDYLPTGQAYSFASDIS 234

Query: 335 LFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPL 388
           + D  G+EV   TI VN PLRYGG+ +YQ D+  +    +    G         
Sbjct: 235 VTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLW 288

Length = 478

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
CHL00177	426	ccs1 c-type cytochrome biogenensis protein; Valida	100.0
PF05140	464	ResB: ResB-like family ; InterPro: IPR007816 This	100.0
COG1333	478	ResB ResB protein required for cytochrome c biosyn	100.0
PRK10369	571	heme lyase subunit NrfE; Provisional	97.4
TIGR03145	628	cyt_nit_nrfE cytochrome c nitrate reductase biogen	97.21
TIGR00353	576	nrfE c-type cytochrome biogenesis protein CcmF. Th	96.39
COG1138	648	CcmF Cytochrome c biogenesis factor [Posttranslati	93.06

>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated

Probab=100.00  E-value=3.4e-83  Score=660.76  Aligned_cols=316  Identities=38%  Similarity=0.718  Sum_probs=301.7

Q ss_pred             cchHHHHHHHhcChhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHH
Q 014569           94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL  173 (422)
Q Consensus        94 ~~~~kki~~~LsSlkLAI~LLllIai~SiiGT~IpQ~~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL  173 (422)
                      ++|++++|++|+|||+||+||++||++|++||+|||+++.++|+++||+++|+||+.+|+++++|||||||+||||++|+
T Consensus         1 ~~~~~~~~~~l~Slr~ai~LL~~ia~~s~~GT~i~Q~~~~~~Y~~~yp~~~p~~G~~~~~~~~~LgL~~vY~s~WF~~ll   80 (426)
T CHL00177          1 KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWKIILKLGLDHIYKTWWFLSLL   80 (426)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEccCCCCHHHHHHhccccccccchhHHHHHHhcCCCccccCHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhcCchhHHHHhhccccccChHhhhccCcccccchhhHHHHHHHHHhcCeEEEeecceEEEEccccccch
Q 014569          174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFA  253 (422)
Q Consensus       174 ~LL~lsL~~CT~~R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~~~~~~~l~~~L~~~gy~v~~~~~~lyA~KG~~grlG  253 (422)
                      +||++||++||++||+|+||.+|+|++++.|++++|++.+.+++.+..+++.+.|+++||+|+++++.+||+||+++|+|
T Consensus        81 ~ll~isL~~Cs~~R~~p~lk~~r~~~~~~~~~~l~kl~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~A~KG~~gr~G  160 (426)
T CHL00177         81 LLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQISTNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIA  160 (426)
T ss_pred             HHHHHHHhheeecccHHHHHHHhcCcccCChhHhhcCccccccchhHHHHHHHHHHHCCeEEEEeCcEEEEecCcchhhh
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceeeEEEE
Q 014569          254 PIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL  333 (422)
Q Consensus       254 pilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~SdL  333 (422)
                      |+++|+|||+||+|+++|+++||+|+++++|||++++++...+|+ ++.+|+   ++||||||+++||++|+|+||+|||
T Consensus       161 ~~lvHlslIvIL~Gal~g~l~G~~g~~~i~eGe~~~i~~~~~~g~-~~~l~~---~svrl~~F~i~y~~~g~p~qF~Sdl  236 (426)
T CHL00177        161 PIIVHFSMILILIGSILGALSGFTAQEIIPKTEIFHIQNIISSGQ-LSKIPQ---ESARVNDFWITYTPEKSIKQFYSDL  236 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceEEEEEEcCCCceecccccCCCC-ccccCC---cEEEEeeEEEEEcCCCCcceEEEEE
Confidence            999999999999999999999999999999999999888665665 455564   4999999999999999999999999


Q ss_pred             EEEecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcceEEeceeeccCCCceEEEEeecCCCCCCCCCcc
Q 014569          334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG  413 (422)
Q Consensus       334 sI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~~~lp~~~~~~~g~~~~w~~~~p~~~~~~~~~~~  413 (422)
                      ++.|++|+|+.+++|+|||||+|+|++|||+|||.+++++++++++.+|+||++++.+| +++|++|+|+++|++   ++
T Consensus       237 si~d~~g~e~~~~tI~VN~PL~y~G~~iYQss~~~~~~~v~~~~~~~~~~pl~~~~~~~-~~~~~~~lP~~~~~~---~~  312 (426)
T CHL00177        237 SILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENNN-NKIWLTWIPLNKQNQ---SG  312 (426)
T ss_pred             EEEcCCCCeeeeEEEEecCCEEECCEEEEEeccccccEEEEeCCCceEEEEeccccCCC-CeeEeeecCCCCCCC---cc
Confidence            99998999999999999999999999999999999999999999999999999999885 999999999988777   67


Q ss_pred             eEEE
Q 014569          414 ILFF  417 (422)
Q Consensus       414 ~~~~  417 (422)
                      ++|+
T Consensus       313 ~~l~  316 (426)
T CHL00177        313 LTLV  316 (426)
T ss_pred             EEEE
Confidence            7774

>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []

Probab=100.00  E-value=1.4e-62  Score=513.30  Aligned_cols=287  Identities=32%  Similarity=0.507  Sum_probs=253.3

Q ss_pred             hhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhhhhc
Q 014569          107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYT  186 (422)
Q Consensus       107 lkLAI~LLllIai~SiiGT~IpQ~~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL~LL~lsL~~CT~~  186 (422)
                      ||+||+||++||++|++||+|||+++.++|.++|       |+.+++|+++|||+||||||||++|++||++||++||++
T Consensus         1 mklai~Ll~~la~~s~iGt~ipQ~~~~~~y~~~~-------g~~~~~i~~~Lgl~~vy~S~wF~~ll~ll~~sL~~Cs~~   73 (464)
T PF05140_consen    1 MKLAIFLLLLLAIASIIGTLIPQGQPPEFYQQNY-------GPFWGPIFDRLGLFDVYSSWWFLLLLVLLALSLIACSID   73 (464)
T ss_pred             CcHHHHHHHHHHHHHhceeeecCCCcHHHHHHHh-------CchHHHHHHHcCCCceEecHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999       888899999999999999999999999999999999999


Q ss_pred             CchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHHhcCeEEEeecc----eEEEEccccccchhhHH
Q 014569          187 TQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLKGP----SLYAFKGLVGRFAPIGV  257 (422)
Q Consensus       187 R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~-----~~~~~~l~~~L~~~gy~v~~~~~----~lyA~KG~~grlGpilv  257 (422)
                      |++++||.+|+++....++.+++++.+.+++     ++..+++.+.|+++||+|.++++    .+||+||+|+|||++++
T Consensus        74 R~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~~~~~l~a~kg~~~~~G~~l~  153 (464)
T PF05140_consen   74 RLPPLWKALRRPPPPKPARFLKRMPLSATFPVPGDPEEALERLAALLKKKGYRVRRQEDGGGVFLYAEKGRWGRWGSLLF  153 (464)
T ss_pred             HHHHHHHHHcCCCCCCChhHhhcCCceEEEEcCCChHHHHHHHHHHHHhCCcEEEEecCCCcEEEEEEcCcchhhhHHHH
Confidence            9999999999999999999999999988875     56788999999999999998765    49999999999999999


Q ss_pred             HHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCC-CCCcCCCCCCcceEEEEccEEEEEecCCCceeeEEEEEEE
Q 014569          258 HLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGP-NGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLF  336 (422)
Q Consensus       258 HlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~-g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~SdLsI~  336 (422)
                      |+|||+||+|+++++++||+|+++++|||++++...... |.++    ...||+|+||||+++||++|+|++|+|||++.
T Consensus       154 Hlslivil~G~~~~~~~g~~g~~~l~eG~~~~~~~~~~~~g~~~----~~~~f~i~l~~F~~~~~~~g~~~~~~S~v~i~  229 (464)
T PF05140_consen  154 HLSLIVILIGALLGSLFGFRGQVMLPEGETFDIPYDSFESGPLF----QPLPFSIRLDDFTIEYYPNGSPKQYASDVTIL  229 (464)
T ss_pred             HHHHHHHHHHHHhhcccceeEEEEEecCCccccccccccccccc----cccceEEEEeeEEEEecccccccceEEEEEEE
Confidence            999999999999999999999999999999988654332 3311    35689999999999999999999999999999


Q ss_pred             ecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcc-----------eEEeceeeccCCC------ceEEEE
Q 014569          337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGP-----------FNLAMAPLKVNGD------KKLFGT  399 (422)
Q Consensus       337 d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~-----------~~lp~~~~~~~g~------~~~w~~  399 (422)
                      |++|+++.+++|+|||||+|+|++|||+||| ++.....++++.           -+.+...++..+.      -++|+.
T Consensus       230 ~~~~~~~~~~~I~VN~Pl~~~G~~~YQss~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (464)
T PF05140_consen  230 DGGGGEVKRATISVNHPLRYKGYRFYQSSYG-APGFTVTDTSGKLIFDSGQPQFLPQVPGDSISLPGGYQDGYQLQFWDF  308 (464)
T ss_pred             cCCCCcceeEEEEecccEEECCEEEEeccCC-CCceEEEecCCcccccccccccccccccceecccccCCCccEEEEEEE
Confidence            9776899999999999999999999999999 764333333322           2335555555543      278999


Q ss_pred             eecCCC
Q 014569          400 FLPLGD  405 (422)
Q Consensus       400 ~~p~~~  405 (422)
                      +.|...
T Consensus       309 ~~~~~~  314 (464)
T PF05140_consen  309 FPDFVP  314 (464)
T ss_pred             Eccccc
Confidence            988643

Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.

>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-58  Score=473.88  Aligned_cols=293  Identities=28%  Similarity=0.431  Sum_probs=255.5

Q ss_pred             hhHHHHHHHHHHHHhheeEEeccC---CCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhh
Q 014569          107 LPLAIGEMAAIAALMALGTAIEQG---EVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC  183 (422)
Q Consensus       107 lkLAI~LLllIai~SiiGT~IpQ~---~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL~LL~lsL~~C  183 (422)
                      ||+||+||++||++|++||++||+   ++.+.|...+       |+.+|+||+.|||+|||+||||++|++||++||++|
T Consensus         1 mr~AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~f-------g~~~gq~~~~Lgl~~Vy~SwWfl~iivlL~VSLv~C   73 (478)
T COG1333           1 MRLAIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEF-------GGLWGQWIDQLGLFDVYSSWWFLAIIVLLGVSLVGC   73 (478)
T ss_pred             ChhHHHHHHHHHHHhcccceeeccccCCCCcchHHHh-------CchHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999994   5544444443       788899999999999999999999999999999999


Q ss_pred             hhcCchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHHhcCeEEEee-cceEEEEccccccchhhHH
Q 014569          184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLK-GPSLYAFKGLVGRFAPIGV  257 (422)
Q Consensus       184 T~~R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~-----~~~~~~l~~~L~~~gy~v~~~-~~~lyA~KG~~grlGpilv  257 (422)
                      ++.|.++.+|+. ||+.+..|+++++++++.+++     +++.+++.+.|+++||+++++ +..++|+||+.+||||+++
T Consensus        74 ~lpr~~~~~ra~-r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~~i~AeKG~~~r~G~ii~  152 (478)
T COG1333          74 SLPRFPALYRAL-RAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIF  152 (478)
T ss_pred             cccccHHHHHHh-hcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccceeEEeccccccchhhHHH
Confidence            999988887766 578899999999999998874     347889999999999999998 7899999999999999999


Q ss_pred             HHHHHHHHHhhhce-ecceeEEEEEEeCCcee-----eeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceeeEE
Q 014569          258 HLAMLLIMAGGTLS-ATGSFRGSVTVPQGLNF-----VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS  331 (422)
Q Consensus       258 HlslIlIL~Gallg-~l~Gf~g~~~l~eGe~~-----~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~S  331 (422)
                      |+|||+||+|++++ .+.|+....+|++||+.     ...+.+..|..++. ...+||++++|+|+++|+++|++++|+|
T Consensus       153 HiaLliil~Gal~~~~~~Gm~~~~~V~~Ge~~~~~lpa~~~~fr~g~~~~~-~~l~~f~v~v~rf~~dy~~~g~~~~f~s  231 (478)
T COG1333         153 HIALLIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGPTADG-TILLPFCVRVNRFGIDYLPTGQAYSFAS  231 (478)
T ss_pred             HHHHHHHHHHHHHhhcccceeEeEEecCCCcccccccccccccccCCccce-eeeehHHHHHHhcccccccccchhhhcC
Confidence            99999999999999 68899999999999998     22334444542222 2336899999999999999999999999


Q ss_pred             EEEEEecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcceEEeceeecc--------------CCC-ceE
Q 014569          332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV--------------NGD-KKL  396 (422)
Q Consensus       332 dLsI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~~~lp~~~~~~--------------~g~-~~~  396 (422)
                      |+++.|.+++++.+++|+|||||+|+|++|||+|||+++..+..+..+.-+.|+..-..              +|. -.+
T Consensus       232 dI~v~~~~~~~~~~~~IrVN~PLr~~G~~vYq~d~G~~~~~t~~~~~~~~rt~~~~~~~~~~~~~l~~~fd~~~G~~v~i  311 (478)
T COG1333         232 DISVTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQTLLSSVFDPPNGMKVAI  311 (478)
T ss_pred             CceEEcCCcceeeeeeEEccCCEeecceEEEEecCccccceeEeccCcccccccccccccccccCccceecCCCcceEEe
Confidence            99999988999999999999999999999999999999998888888777777776654              332 579


Q ss_pred             EEEeecCCCCCC
Q 014569          397 FGTFLPLGDVNS  408 (422)
Q Consensus       397 w~~~~p~~~~~~  408 (422)
                      |+.++|+.+++.
T Consensus       312 ~g~~~Pt~~~~~  323 (478)
T COG1333         312 QGLLIPTKQLNG  323 (478)
T ss_pred             eccccCceeecc
Confidence            999999987665

>PRK10369 heme lyase subunit NrfE; Provisional

Probab=97.40  E-value=0.0015  Score=71.00  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             ccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceee
Q 014569          250 GRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF  329 (422)
Q Consensus       250 grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf  329 (422)
                      +++|.+++|+|+.++++|.+.++.+..+.+..+.+||+.++.                +|+++.++.+.+-.||-..  .
T Consensus       418 ~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~G~~~~~~----------------~y~~~~~~~~~~~~~n~~~--~  479 (571)
T PRK10369        418 VQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLA----------------GYTFRFERLDLQAKGNYTS--E  479 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccceeEEEEECCCCcEEEe----------------cEEEEEeeeeeccCCCcee--E
Confidence            579999999999999999999999999999999999998763                2588888887765555443  3


Q ss_pred             EEEEEEEecCCCee
Q 014569          330 HSDLSLFDIGGKEV  343 (422)
Q Consensus       330 ~SdLsI~d~~G~ev  343 (422)
                      +.++++.+ ||+++
T Consensus       480 ~a~~~v~~-~g~~~  492 (571)
T PRK10369        480 KAIIALFR-HQQRI  492 (571)
T ss_pred             EEEEEEEE-CCEEE
Confidence            47777765 56543

>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE

Probab=97.21  E-value=0.0024  Score=70.23  Aligned_cols=78  Identities=13%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 014569          246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE  325 (422)
Q Consensus       246 KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~  325 (422)
                      |...+++|.+++|+|+.++++|.+.++.+..+-+..+.+||+.+++                +|+++.++.+.+-.||.+
T Consensus       478 ~~~~~~~G~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~Ge~~~~~----------------~y~~~~~~~~~~~~pn~~  541 (628)
T TIGR03145       478 TLKLRQLGMVLAHLGVAICAIGAIMVSYFGSEIGVRLAPQQQQPLG----------------GYEFRYQGFENVIGPNYT  541 (628)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhccccceeEEEECCCCeEEEc----------------CEEEEEeeceecCCCCce
Confidence            3445789999999999999999999999999999999999998763                257888888777666655


Q ss_pred             ceeeEEEEEEEecCCCe
Q 014569          326 VKQFHSDLSLFDIGGKE  342 (422)
Q Consensus       326 pkqf~SdLsI~d~~G~e  342 (422)
                      .  .+.++++.+ ||++
T Consensus       542 ~--~~a~~~v~~-~g~~  555 (628)
T TIGR03145       542 A--EQANFSVTK-NGKI  555 (628)
T ss_pred             e--EEEEEEEEE-CCEE
Confidence            4  346788876 5654

Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.

>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF

Probab=96.39  E-value=0.011  Score=64.50  Aligned_cols=79  Identities=15%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 014569          246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE  325 (422)
Q Consensus       246 KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~  325 (422)
                      |...+++|.+++|+|+.++++|.+.++.+..+....+.+||+.+++                +|+++.++.+.+..||.+
T Consensus       421 ~~~~~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~----------------~y~~~y~~~~~~~gpn~~  484 (576)
T TIGR00353       421 KIKRSQWGMLLAHLGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLG----------------GYTFRFRCVDLEAGPNYT  484 (576)
T ss_pred             cCChhhhhhhhhHHHHHHHHHHHHHHcccceeEEEEECCCCcEEEc----------------CEEEEEeeeeecCCCCce
Confidence            3445789999999999999999999999999999999999998763                268899999887777665


Q ss_pred             ceeeEEEEEEEecCCCee
Q 014569          326 VKQFHSDLSLFDIGGKEV  343 (422)
Q Consensus       326 pkqf~SdLsI~d~~G~ev  343 (422)
                      ..+  .++++.+ ||+++
T Consensus       485 a~~--a~~~V~k-~g~~v  499 (576)
T TIGR00353       485 GEK--AIIDVTK-DGQPE  499 (576)
T ss_pred             EEE--EEEEEEE-CCEEE
Confidence            443  6677765 66543

The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.

>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.2  Score=55.26  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             eEEEE-ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEE
Q 014569          241 SLYAF-KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMD  319 (422)
Q Consensus       241 ~lyA~-KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ie  319 (422)
                      .+++. +...+.+|..+.|++++++++|++.+..++.+-.+.+++|++..+.+                ++++++|++++
T Consensus       480 ~~~~~~~~~~s~~g~~LaH~Gv~l~~~Gi~~s~~~~~E~~v~l~~G~~~~l~~----------------y~~~~~~~~~~  543 (648)
T COG1138         480 VIRGVVALKRSAWGMVLAHLGVALIAVGIAMSSTYRYEREVRLRPGQSVTLAG----------------YTFTLDDVDIA  543 (648)
T ss_pred             chhhhccCChhHHHHHHHHhhHHHhhhhhheehhhhheeeEEecCCceEEeee----------------EEEEEeeeeec
Confidence            34443 33446799999999999999999999999999999999999987742                57899999887


Q ss_pred             EecCCCceeeEEEEEEEecCCCee
Q 014569          320 YYDSGEVKQFHSDLSLFDIGGKEV  343 (422)
Q Consensus       320 yy~~G~pkqf~SdLsI~d~~G~ev  343 (422)
                      -.||-.-  -..++++.+ +|+|+
T Consensus       544 ~gpny~~--~~a~~~~~~-~~~~~  564 (648)
T COG1138         544 QGPNYTA--EVAIVSVTR-NGREI  564 (648)
T ss_pred             cCCceee--eeeEEEEee-ccchh
Confidence            6664221  123344443 56554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 46/292 (15%), Positives = 82/292 (28%), Gaps = 85/292 (29%)

Query: 4   LKPPTLPTRTHILK-APLLHSTFNPQLHTLFNR--------CITLSSTISCKLR--TSQD 52
            +P  LP    +L   P   S     +              C  L++ I   L      +
Sbjct: 313 CRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 53  VKKKKDNVSKKIVFSDSSP-PS-----LKNDEVSGEVESKNGVIGLVKRLPRRVLAALSN 106
            +K  D +S   VF  S+  P+     +  D +  +V        +V +L +  L     
Sbjct: 371 YRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMV------VVNKLHKYSLVEKQP 421

Query: 107 LPLAIG----------EMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWIL 156
               I           ++    AL    + ++   +P  +         +  +F      
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSH--- 476

Query: 157 TLGFDHM-----------FSSPIFLGL------LVMMGLSLMAC-----------TYTTQ 188
            +G  H+           F   +FL        +     +  A             Y   
Sbjct: 477 -IGH-HLKNIEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 189 I----P----LVKVARRWSFLHSAEA-IRKQEFSDTLPRASIQDLGVILMGA 231
           I    P    LV       FL   E  +   +++D L  A + +   I   A
Sbjct: 534 ICDNDPKYERLVNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00