Citrus Sinensis ID: 014582

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
ccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEEccccccccccccccccHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHccHHHHccccccHHHHHHHHHHHHHHHHHcccccc
cccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEccccEEEEEcccccccccEEccEEEEEEccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEcccccccccccEcEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccc
MRKVNWAIALHLGALRqlessssishrnpllhqrwfvqraaatpslsnfrsYSTEMLSNDLIKIMEQRVLAIERRSACLEnlvnqpeaspaeYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderdcilevragtggeeaSLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASaaisgvgvygklkfesgihrvqrvplteksgrvhtsaVSVAilpqadevdvrlrnedlridtyrsggsggqhanttnsavrvthiptgmtiSIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSrsklrseqigsgdrserirtynfpqgrvtdhrvgITHHAIsdmmegenLDIFIDALLLQQEMDAIASFGSTQ
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAatpslsnfrsYSTEMLSNDLIKIMEQRVLAIERRSACLEnlvnqpeaspaeySKANKELRKLRDSMHLISElrtkqkeidGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKsllpkddaderDCILevragtggeeasLFAVDVFKMYErysqkkgwkfeVVGVTESDLRGYKEasaaisgvgvygKLKFESGIHRvqrvplteksgrvhtsavsvailpqadevdvrLRNEDLRIdtyrsggsggqhanttnsavrvTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMErsrihlsrsklrseqigsgdrserirtynfpqgrvtdhrVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRlqslllksllPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNkakalkvlcaklYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
******************************LHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENL*************************************IDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRID*******************RVTHIPTGMTI*************KALKVLCAKLYEM**************************RTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD*********
***VNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRS************IMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEEL*********LQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLY***********************RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMD**A******
MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRS********NTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIH****************SERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
*RKVNWAIALHLGALRQLESS*******PLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL**************RSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRKVNWAIALHLGALRQLESSSSISHRNPLLHQRWFVQRAAATPSLSNFRSYSTEMLSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGSTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
A8GXI1357 Peptide chain release fac yes no 0.755 0.893 0.540 2e-99
A8GSC7355 Peptide chain release fac yes no 0.815 0.969 0.490 4e-99
B0BXT9355 Peptide chain release fac yes no 0.815 0.969 0.490 4e-99
Q1RJT5357 Peptide chain release fac yes no 0.755 0.893 0.537 7e-99
A8GNQ4355 Peptide chain release fac yes no 0.758 0.901 0.528 7e-99
A5V9C3360 Peptide chain release fac yes no 0.834 0.977 0.491 1e-98
B3CL87363 Peptide chain release fac yes no 0.800 0.931 0.504 3e-98
Q73IC2359 Peptide chain release fac yes no 0.822 0.966 0.493 6e-98
Q8YJ95359 Peptide chain release fac yes no 0.834 0.980 0.495 2e-97
C0RFB5359 Peptide chain release fac yes no 0.834 0.980 0.495 2e-97
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU 85-389) GN=prfA PE=3 SV=1 Back     alignment and function desciption
 Score =  363 bits (931), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/320 (54%), Positives = 236/320 (73%), Gaps = 1/320 (0%)

Query: 92  EYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEE 151
           E+ KA+KE   L D +  I E    + E++   +   E S DK  L+M  EE+    D  
Sbjct: 32  EFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFKQEPSLDKATLEMIEEEIRNLEDSL 91

Query: 152 KRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVV 211
             L+  +  +LLPKD+AD +  I+E+RAGTGGEEA+LFA  +F MY+RY++ KGW+FE++
Sbjct: 92  PTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAALFAAKLFNMYQRYAELKGWRFEIL 151

Query: 212 GVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA 271
            + E+ + GYKE SA+I G  V+ KLKFESG+HRVQRVP TE  GR+HTSA +VA+LP+ 
Sbjct: 152 SIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQRVPETESQGRIHTSAATVAVLPEV 211

Query: 272 DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKA 331
           ++VD++L  +DLRIDTYR+ G+GGQH NTT+SAVR+THIPTG+T+++QDE+SQH NKAKA
Sbjct: 212 EDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKA 271

Query: 332 LKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
           LK+L A++YE ER +    R+  R EQIGSGDRSERIRTYNFPQGRV+DHR+ +T + I 
Sbjct: 272 LKILRARIYEEERRKKDQERANNRREQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKID 331

Query: 392 DMMEGENLDIFIDALLLQQE 411
           +++ G+ LD FI+AL+   E
Sbjct: 332 EVINGQ-LDEFIEALIANDE 350
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
Rickettsia bellii (strain OSU 85-389) (taxid: 391896)
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Sheila Smith) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain Iowa) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain RML369-C) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain Hartford) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|A5V9C3|RF1_SPHWW Peptide chain release factor 1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|B3CL87|RF1_WOLPP Peptide chain release factor 1 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q73IC2|RF1_WOLPM Peptide chain release factor 1 OS=Wolbachia pipientis wMel GN=prfA PE=3 SV=1 Back     alignment and function description
>sp|Q8YJ95|RF1_BRUME Peptide chain release factor 1 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=prfA PE=3 SV=2 Back     alignment and function description
>sp|C0RFB5|RF1_BRUMB Peptide chain release factor 1 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=prfA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
255548277422 peptide chain release factor, putative [ 0.981 0.981 0.776 0.0
225437801392 PREDICTED: peptide chain release factor 0.893 0.961 0.826 1e-178
224130870358 predicted protein [Populus trichocarpa] 0.848 1.0 0.846 1e-176
449435146426 PREDICTED: peptide chain release factor 0.938 0.929 0.752 1e-173
42569997413 Peptide chain release factor 1 [Arabidop 0.883 0.903 0.805 1e-173
356503962415 PREDICTED: peptide chain release factor 0.950 0.966 0.718 1e-171
297828437410 hypothetical protein ARALYDRAFT_904175 [ 0.883 0.909 0.800 1e-170
3522941395 putative peptide chain release factor [A 0.864 0.924 0.766 1e-167
218196470368 hypothetical protein OsI_19275 [Oryza sa 0.869 0.997 0.743 1e-162
147818957 1542 hypothetical protein VITISV_040170 [Viti 0.862 0.236 0.745 1e-161
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis] gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/425 (77%), Positives = 375/425 (88%), Gaps = 11/425 (2%)

Query: 2   RKVNWAIALHLGALRQLESSSSIS-HRNPLLHQRWFVQRAAATPSLSNFRSYSTEM---L 57
           R +NWAI       +QL+ SS+I+ H++  + +  F+  A A  S    R+YSTE+   L
Sbjct: 5   RGLNWAI-------KQLQFSSAITWHQSHSIRESSFLGSAIANASHLFSRAYSTELQSHL 57

Query: 58  SNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRKLRDSMHLISELRTKQ 117
           S DLI+IMEQR+ AIE RSA LEN +++ EASPAEYS+ANKELRKLR  + LISELR+ Q
Sbjct: 58  SPDLIRIMEQRLSAIEHRSAYLENFIDKLEASPAEYSRANKELRKLRRPVELISELRSIQ 117

Query: 118 KEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEV 177
           KEIDGL+SL+ EC EDK M+DMA EEL  AI+EEKRLQ++LLKSLLP DDADERDCILEV
Sbjct: 118 KEIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDADERDCILEV 177

Query: 178 RAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKL 237
           RAGTGGEEASLF++D+F+MYERYSQKKGWKFEVV +TESDL+GYKEASAAISG GV+GKL
Sbjct: 178 RAGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAISGAGVFGKL 237

Query: 238 KFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQH 297
           KFESGIHRVQRVP+TEKSGRVHTSAVSVAILPQADEVDV+LRNEDLRIDTYRSGGSGGQH
Sbjct: 238 KFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQH 297

Query: 298 ANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSE 357
           ANTTNSAVRVTH+PTGMT+SIQDERSQHMNKAKALKVLCAKLYE+ERSRI +SRSKLRSE
Sbjct: 298 ANTTNSAVRVTHLPTGMTVSIQDERSQHMNKAKALKVLCAKLYEIERSRIQMSRSKLRSE 357

Query: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIAS 417
           QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAI++MM+GE+LD+FIDALLLQQEMDAIAS
Sbjct: 358 QIGSGDRSERIRTYNFPQGRVTDHRVGITHHAINNMMQGESLDVFIDALLLQQEMDAIAS 417

Query: 418 FGSTQ 422
           F   +
Sbjct: 418 FSCAE 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera] gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa] gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435146|ref|XP_004135356.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] gi|449503299|ref|XP_004161933.1| PREDICTED: peptide chain release factor 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42569997|ref|NP_182225.3| Peptide chain release factor 1 [Arabidopsis thaliana] gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana] gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group] gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
TAIR|locus:2041409413 AT2G47020 [Arabidopsis thalian 0.888 0.907 0.754 6.2e-149
TIGR_CMR|ECH_0597359 ECH_0597 "peptide chain releas 0.798 0.938 0.452 1.1e-78
TIGR_CMR|NSE_0406367 NSE_0406 "peptide chain releas 0.815 0.937 0.443 3.8e-78
TIGR_CMR|APH_0420359 APH_0420 "peptide chain releas 0.798 0.938 0.446 3.1e-76
TIGR_CMR|SPO_2461351 SPO_2461 "peptide chain releas 0.827 0.994 0.441 5.7e-75
UNIPROTKB|P0A7I0360 prfA "peptide chain release fa 0.789 0.925 0.421 2.8e-73
DICTYBASE|DDB_G0283175430 prfA "peptide chain release fa 0.822 0.806 0.429 4.6e-73
TIGR_CMR|CHY_2563358 CHY_2563 "peptide chain releas 0.803 0.946 0.418 2e-72
UNIPROTKB|Q9KQ25362 prfA "Peptide chain release fa 0.810 0.944 0.404 3.2e-72
TIGR_CMR|VC_2179362 VC_2179 "peptide chain release 0.810 0.944 0.404 3.2e-72
TAIR|locus:2041409 AT2G47020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 286/379 (75%), Positives = 323/379 (85%)

Query:    47 SNF-RSYSTEM---LSNDLIKIMEQRVLAIERRSACLENLVNQPEASPAEYSKANKELRK 102
             SN  R Y+T M   LS DLIKIM+QR+ AIE R+A L+ L+NQPE SP E+S+ANKELRK
Sbjct:    34 SNMIRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRK 93

Query:   103 LRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRXXXXXXXXX 162
             LRDSM LI++LR KQKEIDGLKSL+ E S+DKDMLD+A  EL  A++EEKR         
Sbjct:    94 LRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSL 153

Query:   163 XPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK 222
              PKD+ADERDCILEVRAGTGGEEASLFA+D+F+MYERYSQKKGWKF++V +TESD++GYK
Sbjct:   154 LPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYK 213

Query:   223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNED 282
             EASAAI G  VYGKLKFESGIHRVQR+P+TEKSGR+HTSA+SVAILPQADEVDV+LRNED
Sbjct:   214 EASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNED 273

Query:   283 LRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNXXXXXXXXXXXXYEM 342
             LRIDTYRSGGSGGQHANTTNSAVR+ H+PTGM +SIQDERSQHMN            YE+
Sbjct:   274 LRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEI 333

Query:   343 ERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIF 402
             ER RI  SRSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGITHHAI DMM+GENLD+F
Sbjct:   334 ERLRIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMF 393

Query:   403 IDALLLQQEMDAIASFGST 421
             IDALLL+QEMDAIASF ST
Sbjct:   394 IDALLLRQEMDAIASFSST 412
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
TIGR_CMR|ECH_0597 ECH_0597 "peptide chain release factor 1" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0406 NSE_0406 "peptide chain release factor 1" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0420 APH_0420 "peptide chain release factor 1" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2461 SPO_2461 "peptide chain release factor 1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7I0 prfA "peptide chain release factor RF1" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283175 prfA "peptide chain release factor 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2563 CHY_2563 "peptide chain release factor 1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQ25 prfA "Peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2179 VC_2179 "peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8GXI1RF1_RICB8No assigned EC number0.54060.75590.8935yesno
Q6G5T7RF1_BARHENo assigned EC number0.48880.82700.9721yesno
Q98G93RF1_RHILONo assigned EC number0.50570.79620.9359yesno
Q2RWE1RF1_RHORTNo assigned EC number0.52130.76770.9152yesno
B0CIC3RF1_BRUSINo assigned EC number0.49030.83410.9805yesno
C4K0C9RF1_RICPUNo assigned EC number0.52180.75820.9014yesno
A7HTY3RF1_PARL1No assigned EC number0.56640.67770.8056yesno
Q3YS23RF1_EHRCJNo assigned EC number0.48380.80560.9470yesno
Q4ULG0RF1_RICFENo assigned EC number0.52180.75820.9014yesno
B3CL87RF1_WOLPPNo assigned EC number0.50430.80090.9311yesno
Q5PAH2RF1_ANAMMNo assigned EC number0.50140.81040.9526yesno
Q68WK7RF1_RICTYNo assigned EC number0.5250.75820.9014yesno
B9KIV2RF1_ANAMFNo assigned EC number0.50140.81040.9526yesno
Q5NMC7RF1_ZYMMONo assigned EC number0.55050.68000.8016yesno
Q8YJ95RF1_BRUMENo assigned EC number0.49580.83410.9805yesno
A5V9C3RF1_SPHWWNo assigned EC number0.49160.83410.9777yesno
Q8U8B8RF1_AGRT5No assigned EC number0.48090.83640.9805yesno
A1URS5RF1_BARBKNo assigned EC number0.50.81270.9554yesno
Q5GSS8RF1_WOLTRNo assigned EC number0.51000.79620.9359yesno
C3PNN0RF1_RICAENo assigned EC number0.48730.81510.9690yesno
A8GSC7RF1_RICRSNo assigned EC number0.49010.81510.9690yesno
Q11E04RF1_MESSBNo assigned EC number0.50290.77250.9080yesno
Q92MK5RF1_RHIMENo assigned EC number0.48790.82460.9666yesno
A6WXQ3RF1_OCHA4No assigned EC number0.49310.83410.9859yesno
A6UCF2RF1_SINMWNo assigned EC number0.47720.82460.9666yesno
Q2K3T1RF1_RHIECNo assigned EC number0.48620.84590.9944yesno
Q9ZD21RF1_RICPRNo assigned EC number0.51870.75820.9014yesno
B0BXT9RF1_RICRONo assigned EC number0.49010.81510.9690yesno
A8GNQ4RF1_RICAHNo assigned EC number0.52810.75820.9014yesno
Q1RJT5RF1_RICBRNo assigned EC number0.53750.75590.8935yesno
B9JT13RF1_AGRVSNo assigned EC number0.51550.80560.9470yesno
B2S825RF1_BRUA1No assigned EC number0.49310.83410.9805yesno
Q8FYK3RF1_BRUSUNo assigned EC number0.49310.83410.9805yesno
A9M8K5RF1_BRUC2No assigned EC number0.49310.83410.9805yesno
Q2GBN7RF1_NOVADNo assigned EC number0.47050.83410.9943yesno
Q1QQY7RF1_NITHXNo assigned EC number0.48700.81510.9529yesno
A8EYR1RF1_RICCKNo assigned EC number0.51070.77010.9154yesno
Q1GPK3RF1_SPHALNo assigned EC number0.46790.83880.9971yesno
Q2YLN8RF1_BRUA2No assigned EC number0.49310.83410.9805yesno
Q73IC2RF1_WOLPMNo assigned EC number0.49300.82220.9665yesno
Q57B22RF1_BRUABNo assigned EC number0.49310.83410.9805yesno
Q2W6V3RF1_MAGSANo assigned EC number0.56590.68240.8135yesno
Q92HK9RF1_RICCNNo assigned EC number0.49010.81510.9690yesno
Q1MBB2RF1_RHIL3No assigned EC number0.48220.83880.9860yesno
Q2GGM5RF1_EHRCRNo assigned EC number0.48680.80560.9470yesno
B8EI32RF1_METSBNo assigned EC number0.51560.74400.8722yesno
A8F1S1RF1_RICM5No assigned EC number0.49010.81510.9529yesno
B5ZRR4RF1_RHILWNo assigned EC number0.48220.83880.9860yesno
C0RFB5RF1_BRUMBNo assigned EC number0.49580.83410.9805yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 1e-172
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 1e-160
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 1e-138
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 7e-82
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 5e-72
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 2e-60
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 7e-56
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 6e-54
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 8e-53
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 1e-51
pfam00472114 pfam00472, RF-1, RF-1 domain 6e-50
smart00937116 smart00937, PCRF, This domain is found in peptide 2e-44
pfam03462115 pfam03462, PCRF, PCRF domain 2e-40
PRK08179200 PRK08179, prfH, peptide chain release factor-like 5e-18
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 7e-17
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 0.003
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information 
 Score =  485 bits (1252), Expect = e-172
 Identities = 181/359 (50%), Positives = 254/359 (70%), Gaps = 4/359 (1%)

Query: 63  KIMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEI 120
             M  ++ A+E R   LE L++ PE  +    + K +KE  +L   +    E +  Q+++
Sbjct: 2   PSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDL 61

Query: 121 DGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAG 180
           +  K ++ E   D +M +MA EEL    +  + L+  L   LLPKD  D+++ ILE+RAG
Sbjct: 62  EEAKEML-EEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAG 120

Query: 181 TGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFE 240
           TGG+EA+LFA D+F+MY RY++++GWK E++  +E +L GYKE  A ISG GVY KLKFE
Sbjct: 121 TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFE 180

Query: 241 SGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANT 300
           SG+HRVQRVP TE  GR+HTSA +VA+LP+A+EV+V +  +DLRIDT+RS G+GGQH NT
Sbjct: 181 SGVHRVQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNT 240

Query: 301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIG 360
           T+SAVR+TH+PTG+ +  QDERSQH NKAKA+KVL A+LY+ ER +     +  R  Q+G
Sbjct: 241 TDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVG 300

Query: 361 SGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFG 419
           SGDRSERIRTYNFPQGRVTDHR+ +T + + ++MEG+ LD  IDAL+ + + + +A+ G
Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGD-LDELIDALIAEDQAEKLAALG 358

Length = 359
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 100.0
PRK09256138 hypothetical protein; Provisional 99.85
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.53
TIGR00634563 recN DNA repair protein RecN. All proteins in this 82.96
PRK10636638 putative ABC transporter ATP-binding protein; Prov 81.52
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-123  Score=918.57  Aligned_cols=356  Identities=50%  Similarity=0.823  Sum_probs=347.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 014582           64 IMEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMAT  141 (422)
Q Consensus        64 ~m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~  141 (422)
                      .|..+|+.+..||++|+.+|++|++  |++++++++||++.|+++++.|++|++..+++.++++|+.+ +.|+||++||+
T Consensus         4 ~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~-~~D~em~ema~   82 (363)
T COG0216           4 SLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE-EKDPEMREMAE   82 (363)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            4678999999999999999999986  99999999999999999999999999999999999999986 37999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCc
Q 014582          142 EELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGY  221 (422)
Q Consensus       142 eEl~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~  221 (422)
                      +|+..++.++..|+.+|..+|||+||+|++|||||||||+||+||++||++||+||.+||+.+||++++++.++++.|||
T Consensus        83 ~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~  162 (363)
T COG0216          83 EEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGY  162 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCcc-ccccCCCCeEEEEeccCCCCCccccc
Q 014582          222 KEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEV-DVRLRNEDLRIDTYRSGGSGGQHANT  300 (422)
Q Consensus       222 k~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~-~~~i~~~dl~i~~~RssGpGGQ~VNk  300 (422)
                      |++++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||+++++ ++.|+|+||+||||||||||||||||
T Consensus       163 kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhVNt  242 (363)
T COG0216         163 KEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHVNT  242 (363)
T ss_pred             eEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999875 79999999999999999999999999


Q ss_pred             cCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccc
Q 014582          301 TNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTD  380 (422)
Q Consensus       301 t~saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtD  380 (422)
                      |+|||||||+||||||+||++||||+||++||++|++||++++.+++.++.++.|++|+|+||||+||||||||||||||
T Consensus       243 TdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQnRVTD  322 (363)
T COG0216         243 TDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQNRVTD  322 (363)
T ss_pred             cchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcccccCccChHHHHHHHHHHHHHHHHHccCC
Q 014582          381 HRVGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGS  420 (422)
Q Consensus       381 hR~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~  420 (422)
                      ||+|+|+|+|+.||+|.+||++|++|..++++++|+++..
T Consensus       323 HRI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~~  362 (363)
T COG0216         323 HRINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELGE  362 (363)
T ss_pred             hhcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999994389999999999999999998753

>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 4e-77
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 1e-69
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 1e-69
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 5e-68
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 1e-57
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 6e-43
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 9e-43
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 2e-41
3f1e_X378 Crystal Structure Of A Translation Termination Comp 1e-35
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 2e-35
2wh1_Y351 Insights Into Translational Termination From The St 2e-35
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 3e-35
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 3e-35
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  285 bits (728), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 142/327 (43%), Positives = 215/327 (65%), Gaps = 6/327 (1%)
Query: 93  YSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEK 152
           +   ++E  +L D     ++ +  Q++I+  + ++    +D +M +MA +EL  A ++ +
Sbjct: 35  FRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSE 90
Query: 153 RXXXXXXXXXXPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVG 212
           +          PKD  DER+  LEVRAGTGG+EA+LFA D+F+MY RY++ + W+ E++ 
Sbjct: 91  QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMS 150
Query: 213 VTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQAD 272
            +E +  GYKE  A ISG GVYG+LKFESG HRVQRVP TE  GR+HTSA +VA++P+  
Sbjct: 151 ASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELP 210
Query: 273 EVDVRLRNE-DLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNXXXX 331
           + ++   N  DLRIDT+RS G+GGQH NTT+SA+R+TH+PTG+ +  QDERSQH N    
Sbjct: 211 DAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKA 270
Query: 332 XXXXXXXXYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAIS 391
                   +  E ++   + +  R   +GSGDRS+R RTYNFPQGRVTDHR+ +T + + 
Sbjct: 271 LSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLD 330
Query: 392 DMMEGENLDIFIDALLLQQEMDAIASF 418
           ++MEG+ LD+ I+ ++ + + D +A+ 
Sbjct: 331 EVMEGK-LDMLIEPIIQEHQADQLAAL 356
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 1e-169
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 1e-166
2b3t_B360 RF-1, peptide chain release factor 1; translation 1e-166
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 1e-160
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 3e-85
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 3e-84
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 5e-50
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 2e-13
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 8e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 5e-11
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
 Score =  478 bits (1234), Expect = e-169
 Identities = 136/370 (36%), Positives = 226/370 (61%), Gaps = 4/370 (1%)

Query: 53  STEMLSNDLIK-IMEQRVLAIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHL 109
            ++ + +      +  ++ A+E R   L  L++ P+  +    + + ++E    R+++ +
Sbjct: 2   GSDKIHHHHHHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAV 61

Query: 110 ISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDAD 169
             E +   + I   + +I + S D ++ +MA EEL  +   ++  +  L   LLPKD  D
Sbjct: 62  YREYKQVVQNIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPND 121

Query: 170 ERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAIS 229
           +++ ILE+R   GG+EA+LFA D+  MY++Y++ +GWKFEV+  + + + G KE  A +S
Sbjct: 122 DKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVS 181

Query: 230 GVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYR 289
           G  VY KLK+ESG HRVQRVP+TE  GRVHTS  +V ++P+ +EV+  +  +DLR+D Y 
Sbjct: 182 GQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYH 241

Query: 290 SGGSGGQHANTTNSAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHL 349
           + G+GGQ+ N   +AVR+ H+PT + + +Q+ER+Q  N+ KA+K++ A++ +        
Sbjct: 242 ASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQD 301

Query: 350 SRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
            +   R   +G+GDRSERIRTYNFPQ RVTDHR+G+T   +  ++ G+ LD  IDAL+L 
Sbjct: 302 EQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGK-LDEVIDALILY 360

Query: 410 QEMDAIASFG 419
            +   +    
Sbjct: 361 DQTQKLEELN 370
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.93
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.92
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.89
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 94.5
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
Probab=100.00  E-value=1.7e-112  Score=853.85  Aligned_cols=352  Identities=42%  Similarity=0.708  Sum_probs=344.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 014582           65 MEQRVLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATE  142 (422)
Q Consensus        65 m~~kle~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~e  142 (422)
                      |.+|++.+++|+++|+.+|++|+|  |++++++++||++.|+++++.|++|.+..+|+.++.+|+.    |+||++||++
T Consensus         1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~----D~e~~~~a~~   76 (354)
T 3d5a_X            1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD----DPELKEMAKA   76 (354)
T ss_dssp             CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            357899999999999999999998  9999999999999999999999999999999999999984    8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCce
Q 014582          143 ELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYK  222 (422)
Q Consensus       143 El~~l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k  222 (422)
                      |+..++++++.++.+|...|+|+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||
T Consensus        77 e~~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k  156 (354)
T 3d5a_X           77 EREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFS  156 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCCCccccccCCCCeEEEEeccCCCCCccccccC
Q 014582          223 EASAAISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQADEVDVRLRNEDLRIDTYRSGGSGGQHANTTN  302 (422)
Q Consensus       223 ~a~~~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~  302 (422)
                      +|++.|+|++|||+||+|+|||||||||+|+++||+|||||+|+|+|+++++++.|+++||+|+|+|||||||||||||+
T Consensus       157 ~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~  236 (354)
T 3d5a_X          157 KVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTD  236 (354)
T ss_dssp             EEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred             EEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCcccccc
Q 014582          303 SAVRVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHR  382 (422)
Q Consensus       303 saVrltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR  382 (422)
                      |||||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.++.|+.++|+|+||++||||||||+||||||
T Consensus       237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR  316 (354)
T 3d5a_X          237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHR  316 (354)
T ss_dssp             CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETT
T ss_pred             ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCCCeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcccccCccChHHHHHHHHHHHHHHHHHccCCC
Q 014582          383 VGITHHAISDMMEGENLDIFIDALLLQQEMDAIASFGST  421 (422)
Q Consensus       383 ~g~~~~~l~~vl~G~~Ld~~i~~l~~~~~~~~l~~~~~~  421 (422)
                      ||++++||++||+| +||+||++++.++++++|+++..+
T Consensus       317 ~~~~~~~l~~vldG-~Ld~~I~a~l~~~~~~~l~~~~~~  354 (354)
T 3d5a_X          317 IGFTTHDLEGVLSG-HLTPILEALKRADQERQLAALAEG  354 (354)
T ss_dssp             TTEEECCHHHHTTT-CCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCceeCChHHhhCC-chHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999 799999999999999999987543
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 7e-78
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 5e-74
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 6e-68
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 1e-15
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  243 bits (622), Expect = 7e-78
 Identities = 108/342 (31%), Positives = 182/342 (53%), Gaps = 10/342 (2%)

Query: 71  AIERRSACLENLVNQPE--ASPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIY 128
           A + R   +   + QP+    P       KE   L   +  + +++   +++ G    + 
Sbjct: 26  AKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG----LL 81

Query: 129 ECSEDKDMLDMATEELCLAIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASL 188
           E + + D  +   E +   +D  +   + L    +   + D  DC L+++AG+GG EA  
Sbjct: 82  ELAVEADDEETFNEAVA-ELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQD 140

Query: 189 FAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASAAISGVGVYGKLKFESGIHRVQR 248
           +A  + +MY R+++ +G+K E++  +E ++ G K  +  ISG   YG L+ E+G+HR+ R
Sbjct: 141 WASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVR 200

Query: 249 VPLTEKSGRVHTSAVSVAILPQADE-VDVRLRNEDLRIDTYRSGGSGGQHANTTNSAVRV 307
               +  GR HTS  S  + P+ D+ +D+ +   DLRID YR+ G+GGQH N T SAVR+
Sbjct: 201 KSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRI 260

Query: 308 THIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSER 367
           THIPTG+    Q++RSQH NK +A+K + AKLYE+E  + +  +  +   +   G    +
Sbjct: 261 THIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG-WGSQ 319

Query: 368 IRTYNFPQGRVTDHRVGITHHAISDMMEGENLDIFIDALLLQ 409
           IR+Y     R+ D R G+       +++G  LD FI+A L  
Sbjct: 320 IRSYVLDDSRIKDLRTGVETRNTQAVLDGS-LDQFIEASLKA 360
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.81
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-110  Score=844.70  Aligned_cols=334  Identities=33%  Similarity=0.559  Sum_probs=315.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 014582           69 VLAIERRSACLENLVNQPEA--SPAEYSKANKELRKLRDSMHLISELRTKQKEIDGLKSLIYECSEDKDMLDMATEELCL  146 (422)
Q Consensus        69 le~l~~r~~eLe~~lsdP~~--d~~~~~kl~Ke~~~L~~ive~~~~l~~~~~dl~el~eLl~e~~~D~em~e~a~eEl~~  146 (422)
                      ++.+++|+++|+.+|++|+|  ||+++++++||++.|+++++.|++|.+..+|+.++.+|+.+ ++|++|.+++..++..
T Consensus        24 ld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~e-e~deel~~e~~~~l~~  102 (362)
T d1gqea_          24 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELDA  102 (362)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHH
Confidence            56778899999999999999  99999999999999999999999999999999999999876 5799999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcccceeEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCCCceEEEE
Q 014582          147 AIDEEKRLQSLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAVDVFKMYERYSQKKGWKFEVVGVTESDLRGYKEASA  226 (422)
Q Consensus       147 l~~~l~~le~~l~~~llp~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~~iv~~~~~~~~G~k~a~~  226 (422)
                      +.+.++.++    ..++|+||+|.+||||||+||+||+||++||+||||||++||+++||++++++.++++.+|||+|++
T Consensus       103 l~~~l~~le----~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~v~~  178 (362)
T d1gqea_         103 LEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTI  178 (362)
T ss_dssp             HHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEE
T ss_pred             HhhhhhHHH----HhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEEeccccCCccceeEEEE
Confidence            988887766    7788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccccceeeecceeccccCCCCCCCCceeecceEEEEecCC-CccccccCCCCeEEEEeccCCCCCccccccCceE
Q 014582          227 AISGVGVYGKLKFESGIHRVQRVPLTEKSGRVHTSAVSVAILPQA-DEVDVRLRNEDLRIDTYRSGGSGGQHANTTNSAV  305 (422)
Q Consensus       227 ~i~G~~ay~~lk~E~GvHRvqRvp~~~~~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saV  305 (422)
                      .|+|++|||+||+|+|||||||||+|+++||+|||||+|+|+|+. ++++++|+|+||+|+|||||||||||||||+|||
T Consensus       179 ~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~sav  258 (362)
T d1gqea_         179 KISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAV  258 (362)
T ss_dssp             EEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEE
T ss_pred             EEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCccchhhhhcee
Confidence            999999999999999999999999999999999999999999997 5689999999999999999999999999999999


Q ss_pred             EEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCceeEeecCCCccccccccc
Q 014582          306 RVTHIPTGMTISIQDERSQHMNKAKALKVLCAKLYEMERSRIHLSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGI  385 (422)
Q Consensus       306 rltH~PtGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~qi~~~~rsekIRtYnfpq~rVtDhR~g~  385 (422)
                      ||||+||||+|+||++||||+||+.||++|++||++++.+++.++.+..+..+ ....||+|||||||||+||||||||+
T Consensus       259 ri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~iRtY~~~~~rv~DhR~~~  337 (362)
T d1gqea_         259 RITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNK-SDIGWGSQIRSYVLDDSRIKDLRTGV  337 (362)
T ss_dssp             EEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTC-CCCCSCSEEEEEEGGGTEEEETTTCC
T ss_pred             EEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCcCcCCccCccCCCCcccccccCC
Confidence            99999999999999999999999999999999999999988887777554332 33457889999999999999999999


Q ss_pred             cccCcccccCccChHHHHHHHHHH
Q 014582          386 THHAISDMMEGENLDIFIDALLLQ  409 (422)
Q Consensus       386 ~~~~l~~vl~G~~Ld~~i~~l~~~  409 (422)
                      +++||++||+| +||+||++++..
T Consensus       338 ~~~~~~~vl~G-~ld~~i~a~l~~  360 (362)
T d1gqea_         338 ETRNTQAVLDG-SLDQFIEASLKA  360 (362)
T ss_dssp             EESCHHHHHTT-CCHHHHHHHHHT
T ss_pred             eeCChhHHhCC-CHHHHHHHHHHC
Confidence            99999999999 799999999864
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure