Citrus Sinensis ID: 014613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Secondary Structure (PSIPRED)
cHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHccHcHEEEEEEEHcccHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHccHccccccHHHHHHHHHHHHcccccccccccccccHccccccccccccccccccccccccHHHHcccccccccHcccHHcccccccccccHHHHHHcHHcccccccccccccccccccccEEEEEccccEEccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHcccccccccccccccccccccccccccHHcccccccccccccccccHHHHHHccHHHccc
Coil and Loop (DISEMBL)
meaafrahplwagcseeeLDSAGEGLEKYVMTKLFTRVfasipddvktdEQLSEKIALVQQfvrpenldikASFQNETSWLLAQKELQKInmykaprdKLVCILNCCKVINNLLLNASIalnenppgadeflpVLIYVTIkanppqlhsnLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSadmdglsnqndesegQISVEQLIQSKhqgvnstkekehltpvrssesksvkkvtfakdqepitkvpslselenKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSkglgsaasslpssvlpsqVQLQVEtmkapeehkrvelndesekdtsetndssnqvlnsneekvesqlpedeekverggkndetsk
Flexible Loop (DISEMBL)
meaafrahplwagcseEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKhqgvnstkekehltpvrssesksvkkvtfakdqepitkvpslseleNKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETmkapeehkrvelndesekdtsetndssnqvlnsneekvesqlpedeekverggkndetsk
Low Complexity Region (SEG)
MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVinnlllnasialnENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPvrssesksvkkvTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVClskglgsaasslpssvlpsqvqlQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Disordered region (IsUnstruct)
********PLWAGCS******AGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID***************************************************************************************************************SQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGL**********************************************************************************
Disordered Region (DISOPRED)
***A*R*HPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDA*************************************************************************************************************************************DLLNNYKQLVFKY*****************************************************************************************
Disordered Region (DISEMBL)
MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALS***********SAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSK****************************FAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG*************QVQLQVETMKAPE*******************************************************
Disordered Region (DISPRO)
******AHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA*****PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQA********************************************************************TKVPSLSE**NKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGL**********************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNDESEGQISVEQLIQSKHQGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDETSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q9LT31	520	Vacuolar protein sorting-	yes	no	0.933	0.755	0.624	1e-138
O74396	572	Vacuolar protein sorting-	yes	no	0.444	0.326	0.414	5e-39
Q9UJ41	708	Rab5 GDP/GTP exchange fac	yes	no	0.415	0.247	0.388	3e-27
O18973	492	Rab5 GDP/GTP exchange fac	yes	no	0.425	0.363	0.386	3e-27
Q6PAR5	1458	GTPase-activating protein	yes	no	0.408	0.117	0.396	8e-27
A5D794	1413	GTPase-activating protein	no	no	0.408	0.121	0.396	8e-27
Q14C86	1478	GTPase-activating protein	no	no	0.408	0.116	0.396	8e-27
A2RV61	1452	GTPase-activating protein	N/A	no	0.408	0.118	0.385	1e-26
Q9JM13	491	Rab5 GDP/GTP exchange fac	no	no	0.425	0.364	0.380	2e-26
P54787	451	Vacuolar protein sorting-	yes	no	0.456	0.425	0.348	2e-25

>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/399 (62%), Positives = 298/399 (74%), Gaps = 6/399 (1%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 57  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NEN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q 
Sbjct: 237 ISNIDAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQS 292

Query: 241 VNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
           +N  +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VF
Sbjct: 293 LNPKRENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVF 351

Query: 301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVE 360
           QEYPY+FA  GDL I DVE LLN+YKQLVFKYVCL+KGLG   S  PSS  P Q      
Sbjct: 352 QEYPYIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFN 410

Query: 361 TMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 399
           T K  E+H+R   + +  K+T  + D   + L+   E V
Sbjct: 411 TSKESEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449

Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.
Arabidopsis thaliana (taxid: 3702)

>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps901 PE=1 SV=3

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 18/205 (8%)

Query: 11  WAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIAL 58
           WA  S+ E+D+A EG+EK V+ +L+T +F+       IP      DDV+ D  LSEK+ L
Sbjct: 172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231

Query: 59  VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 118
            Q ++  ENLDIK    +   + LA  EL++IN Y APRDK++C+LNCCKVI + L N  
Sbjct: 232 FQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV 290

Query: 119 IALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 178
                    AD F+P+LI+V ++A P  L SN+ YIQR+R   +L GE  Y+ + ++ A 
Sbjct: 291 -----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAM 345

Query: 179 SFISNIDAQALSMEESEFERNMESA 203
           SFI  +D  +L++ E EF   +E +
Sbjct: 346 SFIETLDCSSLTITEEEFNAQIEKS 370

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 17  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 70
           E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +     Q    P N DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478

Query: 71  KASFQNETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGA 128
                 E S ++ +     I M   + PRDKL CI  C K I N +    I  NE P  A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASA 529

Query: 129 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 187
           D+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589

Query: 188 ALSMEESEFERNM 200
           +L++ + +F+R M
Sbjct: 590 SLNLSQEDFDRYM 602

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Homo sapiens (taxid: 9606)

>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 10/189 (5%)

Query: 17  EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
           E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +
Sbjct: 203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261

Query: 76  -NETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
             E S ++ +     I M   + PRDKL CI  C K I N +    I  NE P  AD+FL
Sbjct: 262 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASADDFL 317

Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
           P LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++
Sbjct: 318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377

Query: 192 EESEFERNM 200
            + +F+R M
Sbjct: 378 SQEDFDRYM 386

Rab effector protein acting as linker between gamma-adaptin and RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A. Can act as a ubiquitin ligase.

Bos taurus (taxid: 9913)

>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)

Query: 10   LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
            +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   + 
Sbjct: 1281 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1340

Query: 68   -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
             L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ P
Sbjct: 1341 ALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1397

Query: 127  GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
            GAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1398 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1455

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Mus musculus (taxid: 10090)

>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)

Query: 10   LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
            +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   + 
Sbjct: 1236 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1295

Query: 68   -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
             L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ P
Sbjct: 1296 ALQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1352

Query: 127  GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
            GAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1353 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1410

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Bos taurus (taxid: 9913)

>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 7/179 (3%)

Query: 10   LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
            +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   + 
Sbjct: 1301 IWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHR 1360

Query: 68   -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
             L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C  I NLL   S+A  ++ P
Sbjct: 1361 ALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVP 1417

Query: 127  GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
            GAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1418 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1475

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking. Acts as a GEF for the Ras-related protein RAB31 by exchanging bound GDP for free GTP, leading to regulate LC2A4/GLUT4 trafficking. In the absence of insulin, it maintains RAB31 in an active state and promotes a futile cycle between LC2A4/GLUT4 storage vesicles and early endosomes, retaining LC2A4/GLUT4 inside the cells. Upon insulin stimulation, it is translocated to the plasma membrane, releasing LC2A4/GLUT4 from intracellular storage vesicles. Also involved in EGFR trafficking and degradation, possibly by promoting EGFR ubiquitination and subsequent degradation by the proteasome. Has GEF activity for Rab5 and GAP activity for Ras.

Homo sapiens (taxid: 9606)

>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 7/179 (3%)

Query: 10   LWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN- 67
            +W   SEE+L  A   +E+ +M ++F   F    D D+  D+ L E I  + + V   + 
Sbjct: 1275 IWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHR 1334

Query: 68   -LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
             L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C  I NLL   S+A   + P
Sbjct: 1335 ALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVP 1391

Query: 127  GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
            GAD+F+PVL++V IKANP  L S + YI  +   +RL+GE +Y++    +A  FI  ID
Sbjct: 1392 GADDFVPVLVFVLIKANPTYLLSTVQYISSF-YSNRLIGEESYWWMQFTAAVEFIKTID 1449

Acts both as a GTPase-activating protein (GAP) and a guanine nucleotide exchange factor (GEF), and participates in various processes such as endocytosis, insulin receptor internalization or LC2A4/GLUT4 trafficking.

Xenopus laevis (taxid: 8355)

>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 112/189 (59%), Gaps = 10/189 (5%)

Query: 17  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
           E+++   + +EK++MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +
Sbjct: 202 EKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 260

Query: 76  -NETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 132
             E S ++ +     I M   + PRDKL CI  C K I N +    I  NE P  AD+FL
Sbjct: 261 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKNE-PASADDFL 316

Query: 133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
           P LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++
Sbjct: 317 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 376

Query: 192 EESEFERNM 200
            + +F+R M
Sbjct: 377 SQEDFDRYM 385

Rab effector protein acting as linker between gamma-adaptin, RAB4A or RAB5A. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Stimulates nucleotide exchange on RAB5A (By similarity). Can act as a ubiquitin ligase.

Mus musculus (taxid: 10090)

>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1 SV=2

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 26/218 (11%)

Query: 5   FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS---------IPD----DVKTDEQ 51
           F  +  +      ++ +A EG+EK +M KL++R F+          + D    D+  D+ 
Sbjct: 116 FTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDT 175

Query: 52  LSEKIALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCK 108
           L EKI   + F+ P  LDI  +  N        LA KEL KIN +K+PRDK+VC+LN  K
Sbjct: 176 LLEKIRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASK 234

Query: 109 VINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAA 168
           VI  LL +  +  N    GAD F+PVLIY  +K     L SN+ YI+R+R    + GE  
Sbjct: 235 VIFGLLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEE 290

Query: 169 YFFTNMLSAESFISNIDAQALSMEESE-----FERNME 201
           Y+ +++ +A +FI N+  ++L++E+ E     ++RN +
Sbjct: 291 YYLSSLQAALNFIMNLTERSLTIEDHEDFEEAYQRNFK 328

Required for vacuolar protein sorting; may be required for the consumption of transport vesicles containing vacuolar protein precursors. May bind a Rab GTPase such as VPS21.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
255545562	477	Vacuolar protein sorting-associated prot	0.997	0.880	0.699	1e-164
225459441	463	PREDICTED: vacuolar protein sorting-asso	0.935	0.850	0.681	1e-156
224082206	396	predicted protein [Populus trichocarpa]	0.805	0.856	0.759	1e-152
356515841	467	PREDICTED: vacuolar protein sorting-asso	0.947	0.854	0.677	1e-152
356507682	465	PREDICTED: vacuolar protein sorting-asso	0.952	0.862	0.666	1e-148
449526840	474	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.978	0.869	0.636	1e-145
449442359	474	PREDICTED: LOW QUALITY PROTEIN: vacuolar	0.978	0.869	0.633	1e-144
357461699	478	Rab5 GDP/GTP exchange factor [Medicago t	0.933	0.822	0.613	1e-142
297830640	520	vacuolar sorting protein 9 domain-contai	0.859	0.696	0.671	1e-137
18402362	520	vacuolar sorting protein 9 domain-contai	0.933	0.755	0.624	1e-136

>gi|255545562|ref|XP_002513841.1| Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis] gi|223546927|gb|EEF48424.1| Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 295/422 (69%), Positives = 344/422 (81%), Gaps = 2/422 (0%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLWAGCS++EL+SAGEGLEKYVMTKLFTRVFAS+PDDVK DEQLSEK++L+Q
Sbjct: 57  MEAAFRAHPLWAGCSDDELESAGEGLEKYVMTKLFTRVFASLPDDVKADEQLSEKMSLIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK  FQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 117 QFIRPENLDIKPPFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NENPPGADEFLPV+IYVT+KANPPQL+SNLLYIQRYR QSRLVGEAAYFFTNMLSA SF
Sbjct: 177 SNENPPGADEFLPVVIYVTLKANPPQLNSNLLYIQRYRSQSRLVGEAAYFFTNMLSAVSF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA +LSMEE+EFE+NMESA+ALLSGLS D D LSNQ+D+S       ++++S+ + 
Sbjct: 237 ISNIDANSLSMEEAEFEKNMESARALLSGLSTDWDSLSNQSDQSARNNFKPEVMESQPRA 296

Query: 241 VNSTKEKEHLTPVRSSESKS-VKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQV 299
           V+S K +E L   +SSE++S  K + +AKD+  +TKV SLS++EN+GA MLLKE+ AS V
Sbjct: 297 VDSKKARESLIGSKSSEARSGSKNLQYAKDESFMTKVSSLSDIENRGAVMLLKEDLASSV 356

Query: 300 FQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQV 359
           F+EYPYLFA  GDLTI DVEDLL NYKQLVFKYVCLSKGLG    SL  S   +  Q   
Sbjct: 357 FREYPYLFAHAGDLTIHDVEDLLYNYKQLVFKYVCLSKGLGGTTPSLRLSNSQTHFQHAT 416

Query: 360 ETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGKNDET 419
           ET+K   E + VE NDES+K T++TN S    L S EE  ES+ P++E    +    +ET
Sbjct: 417 ETIKEHLETRSVEANDESQKQTAKTNSSGTFSLVS-EENFESKSPQEEAIALQEEGKEET 475

Query: 420 SK 421
           S+
Sbjct: 476 SQ 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459441|ref|XP_002285827.1| PREDICTED: vacuolar protein sorting-associated protein 9A isoform 1 [Vitis vinifera]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/415 (68%), Positives = 326/415 (78%), Gaps = 21/415 (5%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           ME AFRAHPLWAGCSEEEL+SAGEGLEKYVMTKL+TRVFAS+PDD K DEQL EKI LVQ
Sbjct: 63  MEMAFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGLVQ 122

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPE LDIK +FQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 123 QFIRPEQLDIKTTFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 182

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NE+PPGADEFLPVLIYVT+KANPPQLHSNLLYI RYRRQSR+V EAAYFFTNMLSAESF
Sbjct: 183 SNEDPPGADEFLPVLIYVTLKANPPQLHSNLLYILRYRRQSRMVAEAAYFFTNMLSAESF 242

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNI+A++LSM+E EFE NMESA+ALLSGLS+D+DG+               L + + + 
Sbjct: 243 ISNINAESLSMDEREFEMNMESARALLSGLSSDLDGV---------------LKEPQQKS 287

Query: 241 VNSTKEKE-----HLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEK 295
           + STKEK+      L+ + S  +   K    AKDQ  ITKVPS+S+LENKGA MLLKE++
Sbjct: 288 LYSTKEKDPSIGSDLSLLSSEATSGAKLEPHAKDQL-ITKVPSISDLENKGAAMLLKEDQ 346

Query: 296 ASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQV 355
           AS  F+EYPYL+A VGDLT++DVEDLLN+YKQLVFK+VCLSKGLG  A  LP S+  +Q 
Sbjct: 347 ASLAFREYPYLYANVGDLTVNDVEDLLNHYKQLVFKHVCLSKGLGVPAPPLPLSISQTQA 406

Query: 356 QLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKV 410
           Q   ETMK   + +  E+ D +  D   TND SNQV     E  ES+LP++E  V
Sbjct: 407 QKHAETMKDSADTRAAEVKDNTLNDIGSTNDVSNQVSLFEVETSESKLPQEEAVV 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082206|ref|XP_002306602.1| predicted protein [Populus trichocarpa] gi|222856051|gb|EEE93598.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/341 (75%), Positives = 304/341 (89%), Gaps = 2/341 (0%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           ME AF+AHPLWAGCSEEEL+SAGEGLEKYVMTKL +RVFAS+PDDV+ D+QLSEKI+L+Q
Sbjct: 57  METAFKAHPLWAGCSEEELESAGEGLEKYVMTKLSSRVFASVPDDVEVDKQLSEKISLIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK +FQNETSWLLAQKELQK+N+Y+APRDKLVCILNCCKVINNLL NAS+A
Sbjct: 117 QFIRPENLDIKPAFQNETSWLLAQKELQKVNLYRAPRDKLVCILNCCKVINNLLFNASMA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR QSRLVGEAAYF TN+LSAESF
Sbjct: 177 SNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRCQSRLVGEAAYFLTNILSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA++LSMEESEFE+NME A+  L+GLS D++GLS Q+D++ G  S  +L++SKH+ 
Sbjct: 237 ISNIDAKSLSMEESEFEKNMELARD-LTGLSTDLNGLSTQSDQNAGNNSRAELMESKHRA 295

Query: 241 VNSTKEKEHLTPVRSSESKSVKK-VTFAKDQEPITKVPSLSELENKGATMLLKEEKASQV 299
           ++S KE++     RSSE  S+ K + +AKD+ P+ K+ SLS++ENKGAT+LLKE+  SQV
Sbjct: 296 LSSKKERDLSIGSRSSEVTSMSKDLQYAKDESPMEKISSLSDIENKGATLLLKEDLTSQV 355

Query: 300 FQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG 340
            +EYPYLFA VGDLTI+DVEDLLNNYKQLVFKYVCLSKGLG
Sbjct: 356 LREYPYLFASVGDLTINDVEDLLNNYKQLVFKYVCLSKGLG 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515841|ref|XP_003526606.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Glycine max]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/409 (67%), Positives = 331/409 (80%), Gaps = 10/409 (2%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEA FRAHPLWAGCSEEEL+SAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEK+AL+Q
Sbjct: 57  MEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK  FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCC+VI+NLLLNAS+A
Sbjct: 117 QFIRPENLDIKPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
             ENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQR+R QSRLV EAAY+FTNMLSAESF
Sbjct: 177 SRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMD--GLSNQNDESEGQISVEQLIQSKH 238
           ISNIDA+A+SMEE+EF+ NME A+A+LSG+SAD    G   QND   GQ    +   +KH
Sbjct: 237 ISNIDAKAISMEEAEFDGNMEFARAMLSGISADTQDPGSPYQND---GQHPRAE--PTKH 291

Query: 239 QGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQ 298
           + +N   +    TP   ++S+S KKVTFA ++  ITKVPSLS+LENKGA+M+LKE+K ++
Sbjct: 292 KALNDNNDPALRTPSSVAKSES-KKVTFA-NESLITKVPSLSDLENKGASMILKEDKLNE 349

Query: 299 VFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQ 358
           VF E+PYLFA VGDL + DVEDLLNNYKQLVFKYV LSKGLG + +SLP S   +  +  
Sbjct: 350 VFGEFPYLFASVGDLMVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLPPSNSQNNSEDH 409

Query: 359 VETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDE 407
            ET     ++  ++ N +SE+    T+DSS++V    E+K+ES LP+D+
Sbjct: 410 AETTIDSSDNGPLDDNSKSEESIDTTDDSSDKV-TLEEQKIESDLPKDD 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507682|ref|XP_003522593.1| PREDICTED: vacuolar protein sorting-associated protein 9A-like [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/417 (66%), Positives = 324/417 (77%), Gaps = 16/417 (3%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEA F AHPLWAGCSEEEL SAGEGLEKYVMTKLF RVFAS+PDDVK D+QLSEK+AL+Q
Sbjct: 57  MEADFSAHPLWAGCSEEELASAGEGLEKYVMTKLFARVFASLPDDVKFDDQLSEKMALIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCC+VI+NLLLNAS+A
Sbjct: 117 QFIRPENLDIKPAFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASVA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
             ENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQR+R QSRLV EAAY+FTNMLSAESF
Sbjct: 177 SRENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMD--GLSNQNDESEGQISVEQLIQSKH 238
           ISNIDA+A+SM+E+EFE NME A+A+LSG+SAD    G   QN+    +        +KH
Sbjct: 237 ISNIDAKAISMDEAEFEGNMEFARAMLSGISADTQDPGSPYQNNGHHTRAE-----PTKH 291

Query: 239 QGVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQ 298
           + +    +    TP    +S+S KKVTFA D+  ITKVPSLS+LENKGA+M+LKE+K + 
Sbjct: 292 KALIDHNDPALRTPSSVVKSES-KKVTFA-DESLITKVPSLSDLENKGASMILKEDKLNA 349

Query: 299 VFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQ 358
           VF E+PYLFA VGDLT+ DVEDLLNNYKQLVFKYV LSKGLG + +SLP    PS  Q  
Sbjct: 350 VFGEFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGISPTSLP----PSNSQDN 405

Query: 359 VETMKAPEEHKRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERG 413
            E     +      L+D  +SE+    T DSS++V +  E K+ES LP+DE     G
Sbjct: 406 SEGHAEVDSSDGGPLDDNNKSEESIDTTEDSSDKV-SLEERKIESGLPKDEPVAPEG 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526840|ref|XP_004170421.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 9A-like [Cucumis sativus]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/426 (63%), Positives = 324/426 (76%), Gaps = 14/426 (3%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           ME AFRAHPLW+GCSEEEL+SAGEGLEKYVMTKLF+RV+AS+ DDVK DEQ+SEK+AL+Q
Sbjct: 57  MEGAFRAHPLWSGCSEEELESAGEGLEKYVMTKLFSRVYASLADDVKIDEQISEKMALIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK +FQNETSWLLAQKEL KINM+KAPRDKLVC+L+CCKVI+NLL NASIA
Sbjct: 117 QFIRPENLDIKPNFQNETSWLLAQKELLKINMHKAPRDKLVCLLSCCKVISNLLFNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NENPPGADEFLPVLIYV IKANPPQLHSNLLYIQRYR QSRL GEAAYFFTN+LSAESF
Sbjct: 177 SNENPPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNVLSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA+ALSMEE EF +NMESA+ALLSGLS+D++ LSN+N+  EG     +L+++  Q 
Sbjct: 237 ISNIDAKALSMEEIEFXKNMESARALLSGLSSDVEALSNKNNLDEGVGHYSELVETSSQA 296

Query: 241 VNSTKEKEHLTPVR--SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKAS- 297
                     +PVR   +E K   +   AKDQ  + KVPSLS+LENKGAT+LL ++    
Sbjct: 297 SVE-------SPVRPKPTEGKPRTEAPHAKDQSAVMKVPSLSDLENKGATILLNDQTGGR 349

Query: 298 QVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG--SAASSLPSSVLPSQV 355
           Q  +EYPYLF+QVGDLT  DVE+LL+ YKQLVFKYV LS+GL   +  SS   S + S  
Sbjct: 350 QALREYPYLFSQVGDLTFKDVEELLSQYKQLVFKYVSLSRGLSLTTEFSSYSKSEMHS-- 407

Query: 356 QLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGK 415
           Q   E+ K PE+ + V  NDES  D     D  +      EE V S LP+D+ ++ +   
Sbjct: 408 QHHHESFKEPEDVRDVTSNDESAGDRHRLIDGPDGTSLFGEENVGSGLPQDKVELPQREG 467

Query: 416 NDETSK 421
           N+E S+
Sbjct: 468 NNEMSQ 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442359|ref|XP_004138949.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 9A-like [Cucumis sativus]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/426 (63%), Positives = 323/426 (75%), Gaps = 14/426 (3%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           ME AFRAHPLW+GCSEEEL+SAGEGLEKYVMTKLF+RV+AS+ DDVK DEQ+SEK+AL+Q
Sbjct: 57  MEGAFRAHPLWSGCSEEELESAGEGLEKYVMTKLFSRVYASLADDVKIDEQISEKMALIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK +FQNETSWLLAQKEL KINM+KAPRDKLVC+L+CCKVI+NLL NASIA
Sbjct: 117 QFIRPENLDIKPNFQNETSWLLAQKELLKINMHKAPRDKLVCLLSCCKVISNLLFNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NENPPGADEFLPVLIYV IKANPPQLHSNLLYIQRYR QSRL GEAAYFFTN+LSAESF
Sbjct: 177 SNENPPGADEFLPVLIYVIIKANPPQLHSNLLYIQRYRGQSRLTGEAAYFFTNVLSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA+ALSMEE EFE+NMESA+ALLSGLS+D++ LSN+N+  EG     +L+++  Q 
Sbjct: 237 ISNIDAKALSMEEIEFEKNMESARALLSGLSSDVEALSNKNNLDEGVGHYSELVETSSQA 296

Query: 241 VNSTKEKEHLTPVR--SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKAS- 297
                     +PVR   +E K   +   AKDQ  + KVPSLS+LENKGAT+LL ++    
Sbjct: 297 SVE-------SPVRPKPTEGKPRTEAPHAKDQSAVMKVPSLSDLENKGATILLNDQTGGR 349

Query: 298 QVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLG--SAASSLPSSVLPSQV 355
           Q  +EY  LF+QVGDLT  DVE+LL+ YKQLVFKYV LS+GL   +  SS   S + S  
Sbjct: 350 QALREYSQLFSQVGDLTFKDVEELLSQYKQLVFKYVSLSRGLSLTTEFSSYSKSEMHS-- 407

Query: 356 QLQVETMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVESQLPEDEEKVERGGK 415
           Q   E+ K PE+ + V  NDES  D     D  +      EE V S LP+D+ ++ +   
Sbjct: 408 QHHHESFKEPEDVRDVTSNDESAGDRHRLIDGPDGTSLFGEENVGSGLPQDKVELPQREG 467

Query: 416 NDETSK 421
           N+E S+
Sbjct: 468 NNEMSQ 473

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461699|ref|XP_003601131.1| Rab5 GDP/GTP exchange factor [Medicago truncatula] gi|355490179|gb|AES71382.1| Rab5 GDP/GTP exchange factor [Medicago truncatula]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/440 (61%), Positives = 326/440 (74%), Gaps = 47/440 (10%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAF+AHPLWAGCS++EL+SAGEGLEKYVMTKLF RVFAS+PDDVK DEQLSEK+AL+Q
Sbjct: 57  MEAAFKAHPLWAGCSDDELESAGEGLEKYVMTKLFPRVFASVPDDVKLDEQLSEKMALIQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+RPENLDIK  FQNETSWLLAQKELQKINMYKAPRDKL CILNCCKVI NLLLNAS+A
Sbjct: 117 QFIRPENLDIKPPFQNETSWLLAQKELQKINMYKAPRDKLTCILNCCKVIGNLLLNASLA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
             +NPPGADEFLPVLIYVT+KANPPQLHSNLLYIQR+RRQSRLVGEA+Y+FTNMLSAESF
Sbjct: 177 SKDNPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA A+SM+E+EFERNME A+ALLSGLS D                  Q   S +Q 
Sbjct: 237 ISNIDANAISMDETEFERNMEFARALLSGLSVDT-----------------QDPNSPYQ- 278

Query: 241 VNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
            N  +  ++  P   ++ +S KKVTFA +   I KVPSLS+LENKGA M++KE+K + VF
Sbjct: 279 -NHVQHDKNKAPSSDAKLES-KKVTFASESS-IAKVPSLSDLENKGACMIIKEDKLNDVF 335

Query: 301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQL-QV 359
           +E+PY+FA VGDLT+SDVEDLL NYK+LV KYVCLSKGLG ++SS   S   +  Q   V
Sbjct: 336 REFPYMFASVGDLTVSDVEDLLKNYKRLVSKYVCLSKGLGVSSSSHHPSNPQNNAQQDHV 395

Query: 360 ETMKA-------------PEEHKRVELNDESEKDTSE-----TNDSSNQVLNSNEE---- 397
           ET+               P+ + +  +  E+  D+S+     +N+ S + L+++E+    
Sbjct: 396 ETLSKGLASSSSSHHPSNPQNNAQGHVESETTIDSSDNGPVASNEKSEKSLDTSEDNSDP 455

Query: 398 ---KVESQLPEDEEKVERGG 414
              K +S LP+DE     GG
Sbjct: 456 EEKKSDSGLPQDEAAAPEGG 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830640|ref|XP_002883202.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329042|gb|EFH59461.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/368 (67%), Positives = 287/368 (77%), Gaps = 6/368 (1%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 57  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NEN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA++LS++E+EFE+NMESA+A +SGL +     S Q          ++    K Q 
Sbjct: 237 ISNIDAKSLSLDEAEFEKNMESARARISGLGSQ----SYQTGHGTAPPPRDESTLQKTQS 292

Query: 241 VNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
           +N  +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VF
Sbjct: 293 LNPKRENTLFQSKSSDSLSGTNEILNINSETPMKKAESISDLENKGAT-LLKDTEPSKVF 351

Query: 301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVE 360
           QEYPYLFA  GDL I DVEDLLNNYKQLVFKYVCL+KGLG A S  PSS  P Q     +
Sbjct: 352 QEYPYLFASAGDLRIGDVEDLLNNYKQLVFKYVCLTKGLGDATSLAPSSS-PLQALSGFD 410

Query: 361 TMKAPEEH 368
           T K  E+H
Sbjct: 411 TYKESEDH 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402362|ref|NP_566645.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis thaliana] gi|75335448|sp|Q9LT31.1|VPS9A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 9A; Short=AtVSP9a gi|11994188|dbj|BAB01291.1| unnamed protein product [Arabidopsis thaliana] gi|15027907|gb|AAK76484.1| unknown protein [Arabidopsis thaliana] gi|19310677|gb|AAL85069.1| unknown protein [Arabidopsis thaliana] gi|332642763|gb|AEE76284.1| vacuolar sorting protein 9 domain-containing protein [Arabidopsis thaliana]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/399 (62%), Positives = 298/399 (74%), Gaps = 6/399 (1%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 57  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 116

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NEN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
           ISNIDA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q 
Sbjct: 237 ISNIDAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQS 292

Query: 241 VNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
           +N  +E        S       ++     + P+ K  S+S+LENKGAT LLK+ + S+VF
Sbjct: 293 LNPKRENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVF 351

Query: 301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVE 360
           QEYPY+FA  GDL I DVE LLN+YKQLVFKYVCL+KGLG   S  PSS  P Q      
Sbjct: 352 QEYPYIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFN 410

Query: 361 TMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 399
           T K  E+H+R   + +  K+T  + D   + L+   E V
Sbjct: 411 TSKESEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2092211	520	VPS9A [Arabidopsis thaliana (t	0.938	0.759	0.561	6.8e-111
TAIR|locus:2184727	712	VPS9B "AT5G09320" [Arabidopsis	0.755	0.446	0.592	5.2e-97
DICTYBASE|DDB_G0285073	726	DDB_G0285073 "vacuolar sorting	0.565	0.327	0.369	1.6e-39
POMBASE|SPBC4F6.10	572	vps901 "guanyl-nucleotide exch	0.444	0.326	0.4	1.8e-36
ASPGD|ASPL0000018244	767	AN3678 [Emericella nidulans (t	0.380	0.208	0.427	3.7e-36
DICTYBASE|DDB_G0289495	1197	DDB_G0289495 "vacuolar sorting	0.517	0.182	0.318	4.5e-30
ZFIN|ZDB-GENE-040426-1486	502	rabgef1 "RAB guanine nucleotid	0.434	0.364	0.378	3.4e-26
UNIPROTKB|F6Y7P9	492	RABGEF1 "Uncharacterized prote	0.425	0.363	0.349	3.9e-26
UNIPROTKB|Q2TBX8	491	RABGEF1 "RABGEF1 protein" [Bos	0.425	0.364	0.349	8.5e-26
UNIPROTKB|O18973	492	RABGEF1 "Rab5 GDP/GTP exchange	0.425	0.363	0.349	8.6e-26

TAIR|locus:2092211 VPS9A [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 225/401 (56%), Positives = 272/401 (67%)

Query:     1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
             MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct:    57 MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 116

Query:    61 QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXX 120
             QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV           
Sbjct:   117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query:   121 XXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
               EN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct:   177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236

Query:   181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
             ISNIDA+++S++E+EFE+NMESA+A +SGL    D  + Q          ++    K Q 
Sbjct:   237 ISNIDAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQS 292

Query:   241 VNSTKEKEHLTPXXXXXXXXXXXXTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
             +N  +E                       + P+ K  S+S+LENKGAT LLK+ + S+VF
Sbjct:   293 LNPKRENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVF 351

Query:   301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCXXXXXXXXXXXXXXXXXXXXXXXQVE 360
             QEYPY+FA  GDL I DVE LLN+YKQLVFKYVC                          
Sbjct:   352 QEYPYIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSSPLQASSG-FN 410

Query:   361 TMKAPEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKVES 401
             T K  E+H+R   + +  K+T  + D   + L+   E V +
Sbjct:   411 TSKESEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDVNN 451

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0000919 "cell plate assembly" evidence=IMP

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0042546 "cell wall biogenesis" evidence=IMP

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2184727 VPS9B "AT5G09320" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 198/334 (59%), Positives = 239/334 (71%)

Query:     1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
             ME+AFRAHPLW+GCS++ELD+AG+GLEKYVMTKLF RVFAS  +DV +DE+L +KI+LVQ
Sbjct:    54 MESAFRAHPLWSGCSDDELDNAGDGLEKYVMTKLFPRVFASNTEDVISDEKLFQKISLVQ 113

Query:    61 QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXX 120
             QF+ PENLDI+ +FQN+TSWLLAQKELQKINMY APRDKL+CIL CCKV           
Sbjct:   114 QFISPENLDIQPTFQNQTSWLLAQKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIA 173

Query:   121 XXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
               +N PGAD+FLPVLIYVTIKANPPQ HSNLLYIQRYRRQS+LVGEA Y FTN+LSAESF
Sbjct:   174 SNQNEPGADQFLPVLIYVTIKANPPQFHSNLLYIQRYRRQSKLVGEAGYLFTNILSAESF 233

Query:   181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQG 240
             ISNIDA++LSM+E++FE  M+SA A LSG  +     S Q D      +       +   
Sbjct:   234 ISNIDAKSLSMDEADFETKMKSAHARLSGPGSQ----SYQTDHGAALPTAHNT--KRENM 287

Query:   241 VNSTKEKEHLTPXXXXXXXXXXXXTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVF 300
             +  TK  +  +             T  K  +PIT + +        AT+L    +A+++F
Sbjct:   288 LLHTKSTDSFS-----GTNETLSETPIKKADPITDLENKG-----AATLLNDRSEATKIF 337

Query:   301 QEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVC 334
             QEYPY+FA VGDL I DVEDLLNNYKQLVFKYVC
Sbjct:   338 QEYPYMFASVGDLKIGDVEDLLNNYKQLVFKYVC 371

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

DICTYBASE|DDB_G0285073 DDB_G0285073 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 377 (137.8 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
 Identities = 96/260 (36%), Positives = 138/260 (53%)

Query:     9 PLWAGCSEEELDSAGEGLEKYVMTKLFTRVF------------ASIPDD---VKTDEQLS 53
             PLWA   E E++   +G+EKY+M KL+   F             +I  +   + T+E L 
Sbjct:   201 PLWANAGEAEVEGIRDGIEKYIMGKLYHCTFPPARLGGLELTEGNIVSEGSLIPTEEDLK 260

Query:    54 E-KIALVQQFVRPENLDIKASFQ-NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXX 111
               K   +  F+ P++LDI+     NE    LA  EL+KIN YK PRDK+VC+ NCCKV  
Sbjct:   261 LFKHITIHGFLEPQHLDIQQFINSNEQRQNLAISELRKINTYKTPRDKMVCVYNCCKVIF 320

Query:   112 XXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFF 171
                         NP GADEFLP+LIYV +K+NP  L SN+ Y+  +R QSR++ E A +F
Sbjct:   321 KLLKSVNPNG--NPSGADEFLPILIYVVLKSNPIMLKSNITYVNTFRDQSRMMTEIACYF 378

Query:   172 TNMLSAESFISNIDAQA-LSMEESEFERNMESAQALLS-GLSADMDGLSNQNDESEGQIS 229
             T+++SA SFI NI     L++EESEF R  +  +  L   L  +M    N    +  QI 
Sbjct:   379 THLVSAVSFIENITTPVDLTIEESEFYRLRDKFELELPLKLHPEMLKRLNYKPPTNLQI- 437

Query:   230 VEQLIQSKHQGVNSTKEKEH 249
             +   I + +  +N+     +
Sbjct:   438 LNSTINNNNNNINNNNNNNN 457

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC4F6.10 vps901 "guanyl-nucleotide exchange factor Vps901 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 375 (137.1 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
 Identities = 82/205 (40%), Positives = 120/205 (58%)

Query:    11 WAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIAL 58
             WA  S+ E+D+A EG+EK V+ +L+T +F+       IP      DDV+ D  LSEK+ L
Sbjct:   172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231

Query:    59 VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXX 118
              Q ++  ENLDIK    +   + LA  EL++IN Y APRDK++C+LNCCKV         
Sbjct:   232 FQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV 290

Query:   119 XXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 178
                      AD F+P+LI+V ++A P  L SN+ YIQR+R   +L GE  Y+ + ++ A 
Sbjct:   291 -----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAM 345

Query:   179 SFISNIDAQALSMEESEFERNMESA 203
             SFI  +D  +L++ E EF   +E +
Sbjct:   346 SFIETLDCSSLTITEEEFNAQIEKS 370

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006623 "protein targeting to vacuole" evidence=ISO

ASPGD|ASPL0000018244 AN3678 [Emericella nidulans (taxid:162425)]

 Score = 339 (124.4 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
 Identities = 71/166 (42%), Positives = 108/166 (65%)

Query:    44 DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWL-LAQKELQKINMYKAPRDKLVC 102
             +DV+ DE L++K+  +  +VR E+LDI     +   +L LAQ+EL KIN Y+APRDK++C
Sbjct:   407 EDVERDEVLAQKMR-IYSWVREEHLDIAPVSSSGRRFLNLAQQELLKINGYRAPRDKVIC 465

Query:   103 ILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSR 162
             ILNCCKV             ++   AD F+P+LIYV ++ANP  L SN+ YI R+R Q +
Sbjct:   466 ILNCCKVIFGLLRNAK----KSDTSADSFIPLLIYVVLQANPEHLVSNIQYILRFRNQEK 521

Query:   163 LVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLS 208
             L GEA Y+ +++  A  FI  +D  +L++ + EFERN+E+A + ++
Sbjct:   522 LGGEAGYYLSSLSGAIQFIETLDRTSLTVSDEEFERNVEAAVSAIA 567

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0289495 DDB_G0289495 "vacuolar sorting protein 9 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 308 (113.5 bits), Expect = 4.5e-30, Sum P(3) = 4.5e-30
 Identities = 72/226 (31%), Positives = 120/226 (53%)

Query:     1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
             M+      P W+  SEEEL+ +   L++YV+ K++  VF    ++ K D+ LS  I  + 
Sbjct:   639 MQNTLTLDPQWSQSSEEELNYSSHHLQQYVLEKIYDYVFQPSEEEAKKDQDLSMLIDKLS 698

Query:    61 QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXX 120
              F+  E+++I     +E  W  A K L KIN  ++ R K++ I+ CCK            
Sbjct:   699 -FITLEHMEIPIYGFSEAMWYKAGKYLLKINFTQSCRHKVMYIMKCCKTILKHFSTHLKE 757

Query:   121 XXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
                   GAD  LP LI+V +K NPP LHSN+++I ++   S    EA Y+ T ++SA  F
Sbjct:   758 LS----GADFLLPNLIWVLLKTNPPFLHSNVIFISKFSDSSD--SEAIYYLTQLISAIYF 811

Query:   181 ISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEG 226
             I N+  + L +++ E+ + M ++  ++S  S  +  L+N N+ + G
Sbjct:   812 IENLKPELLKIDKKEYYKLMGTSSPIISR-SPSLQSLNNNNNNNNG 856

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-1486 rabgef1 "RAB guanine nucleotide exchange factor (GEF) 1" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 75/198 (37%), Positives = 109/198 (55%)

Query:    15 SEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKI-AL----VQQFVRPENL 68
             S E++D   + +EKY+MT+L+  VF     DD K D     +I AL    +Q    P   
Sbjct:   210 SSEKVDRVMDQVEKYIMTRLYKSVFCPETSDDEKKDLATQHRIRALHWVTIQMLCVPVEE 269

Query:    69 DIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGA 128
             +I    +   S + A  ++ +++  + PRDKL CI +C K                P  A
Sbjct:   270 EIP---EVSDSVVKAITDIIEMDSKRVPRDKLACITSCSK----HIFNAIRVTKNEPASA 322

Query:   129 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 187
             D+FLP LIY+ +KANPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ
Sbjct:   323 DDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 382

Query:   188 ALSMEESEFERNMESAQA 205
             +L++   +FER M S QA
Sbjct:   383 SLNLSPEDFERYM-SGQA 399

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F6Y7P9 RABGEF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 299 (110.3 bits), Expect = 3.9e-26, P = 3.9e-26
 Identities = 66/189 (34%), Positives = 109/189 (57%)

Query:    17 EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
             E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +
Sbjct:   203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261

Query:    76 -NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFL 132
              +E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FL
Sbjct:   262 ISEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADDFL 317

Query:   133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
             P LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++
Sbjct:   318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377

Query:   192 EESEFERNM 200
              + +F+R M
Sbjct:   378 SQEDFDRYM 386

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q2TBX8 RABGEF1 "RABGEF1 protein" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 8.5e-26, P = 8.5e-26
 Identities = 66/189 (34%), Positives = 108/189 (57%)

Query:    17 EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
             E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +
Sbjct:   202 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 260

Query:    76 -NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFL 132
               E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FL
Sbjct:   261 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADDFL 316

Query:   133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
             P LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++
Sbjct:   317 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 376

Query:   192 EESEFERNM 200
              + +F+R M
Sbjct:   377 SQEDFDRYM 385

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O18973 RABGEF1 "Rab5 GDP/GTP exchange factor" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 8.6e-26, P = 8.6e-26
 Identities = 66/189 (34%), Positives = 108/189 (57%)

Query:    17 EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 75
             E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +
Sbjct:   203 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEE 261

Query:    76 -NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFL 132
               E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FL
Sbjct:   262 IPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADDFL 317

Query:   133 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSM 191
             P LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++
Sbjct:   318 PTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL 377

Query:   192 EESEFERNM 200
              + +F+R M
Sbjct:   378 SQEDFDRYM 386

GO:0005515 "protein binding" evidence=IPI

GO:0055037 "recycling endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:1900235 "negative regulation of Kit signaling pathway" evidence=IEA

GO:1900165 "negative regulation of interleukin-6 secretion" evidence=IEA

GO:0060368 "regulation of Fc receptor mediated stimulatory signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048261 "negative regulation of receptor-mediated endocytosis" evidence=IEA

GO:0046580 "negative regulation of Ras protein signal transduction" evidence=IEA

GO:0043305 "negative regulation of mast cell degranulation" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002686 "negative regulation of leukocyte migration" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT31	VPS9A_ARATH	No assigned EC number	0.6240	0.9334	0.7557	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
pfam02204	104	pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9)	3e-38
smart00167	117	smart00167, VPS9, Domain present in VPS9	5e-28

>gnl|CDD|216928 pfam02204, VPS9, Vacuolar sorting protein 9 (VPS9) domain

 Score =  133 bits (336), Expect = 3e-38
 Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 80  WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 139
           W  AQ+EL+K+N  K+PR+KL C+L  CK+I   L  ++      P GAD+ LP+LIYV 
Sbjct: 1   WEKAQEELKKLNEAKSPREKLKCLLRTCKLITEALSKSN---PGEPLGADDLLPILIYVL 57

Query: 140 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 185
           IKANPP L+SNL +I  +R    L GE  Y+ T + +A  FI N+D
Sbjct: 58  IKANPPNLYSNLQFISLFRDPDLLSGEEGYYLTTLEAALEFIENLD 103

Length = 104

>gnl|CDD|128469 smart00167, VPS9, Domain present in VPS9

 Score =  106 bits (267), Expect = 5e-28
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 5/120 (4%)

Query: 80  WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 139
             + Q EL+ + +YK+P DK+ C+L  CK+I  LL   S  +     GAD+FLPVLIYV 
Sbjct: 2   VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVA----GADDFLPVLIYVI 57

Query: 140 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI-DAQALSMEESEFER 198
           IK +P  L  N  Y++ +   S L GE  Y+ T++ +A + I  + +A AL +   +   
Sbjct: 58  IKCDPRDLLLNAEYMEEFLEPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQELE 117

Domain present in yeast vacuolar sorting protein 9 and other proteins. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
smart00167	117	VPS9 Domain present in VPS9. Domain present in yea	100.0
PF02204	104	VPS9: Vacuolar sorting protein 9 (VPS9) domain; In	99.93
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.79
KOG2320	651	consensus RAS effector RIN1 (contains VPS domain)	99.6
KOG2319	477	consensus Vacuolar assembly/sorting protein VPS9 [	99.12

>smart00167 VPS9 Domain present in VPS9

Probab=100.00  E-value=3.1e-33  Score=243.34  Aligned_cols=115  Identities=35%  Similarity=0.599  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhh
Q 014613           79 SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR  158 (421)
Q Consensus        79 ~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~  158 (421)
                      +|..|+.+|++||.++||+|||.||++||+.|++.+..    ..+.++|||||||+||||||||+|++|+||++||++|+
T Consensus         1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~----~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~   76 (117)
T smart00167        1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLET----QSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFL   76 (117)
T ss_pred             CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc----ccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHC
Confidence            58999999999999999999999999999999998853    23567999999999999999999999999999999999


Q ss_pred             ccccccCchhhHHhhHHHHHHHHHhCCCCCCC-CCHHHHH
Q 014613          159 RQSRLVGEAAYFFTNMLSAESFISNIDAQALS-MEESEFE  197 (421)
Q Consensus       159 ~~s~L~gE~gYyLTnLeAAv~FI~~ld~esLs-I~~~eF~  197 (421)
                      +++.+.||.|||||||++|+.||++++.++|. .++++|+
T Consensus        77 ~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~~~~~~~~  116 (117)
T smart00167       77 EPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQEL  116 (117)
T ss_pred             CccccccHHHHHHHHHHHHHHHHHHCCHHhCCccCHHHhc
Confidence            99999999999999999999999999999997 5566664

Domain present in yeast vacuolar sorting protein 9 and other proteins.

>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins

Probab=99.93  E-value=1.2e-25  Score=188.21  Aligned_cols=103  Identities=41%  Similarity=0.706  Sum_probs=88.8

Q ss_pred             HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhc
Q 014613           80 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR  159 (421)
Q Consensus        80 ~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~  159 (421)
                      |+.|+.+|++|+..+||.+|+.||.++++.|.+.+..   ......+|||||||+|+|||+||++++++++++||+.|+.
T Consensus         1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~---~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~   77 (104)
T PF02204_consen    1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKT---SKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFID   77 (104)
T ss_dssp             -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHH---HCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc---ccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcc
Confidence            7899999999999999999999999999999998822   3467889999999999999999999999999999999998


Q ss_pred             cccccCchhhHHhhHHHHHHHHHhCC
Q 014613          160 QSRLVGEAAYFFTNMLSAESFISNID  185 (421)
Q Consensus       160 ~s~L~gE~gYyLTnLeAAv~FI~~ld  185 (421)
                      +..+.||.|||||||++|++||++++
T Consensus        78 ~~~~~~e~~y~ltt~~aA~~~i~~~~  103 (104)
T PF02204_consen   78 SSLLSGEEGYYLTTFEAAVEYIQNLE  103 (104)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHcc
Confidence            88889999999999999999999986

; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.7e-20  Score=197.29  Aligned_cols=353  Identities=35%  Similarity=0.446  Sum_probs=266.8

Q ss_pred             ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHhccCCCCccccccccCChhhH
Q 014613            1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSW   80 (421)
Q Consensus         1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e~~~   80 (421)
                      |+..+..||.|..+++++.+..+.++++++|+..++.+|....++...|.....+...++..+.++..+..+.+.....|
T Consensus        14 ~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~   93 (477)
T KOG2319|consen   14 YSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFASDVEEVDADVLNEIDDSSLQTIISPEASGDQETFNQNTSI   93 (477)
T ss_pred             hhhhhccccccccchhhhhhhccccccchhcccccccCcchhhhhhhhHhhhccccchhhhhcCHhhccCccchhhccch
Confidence            56789999999999999999999999999999999999994444556676666667667778889999999888888889


Q ss_pred             HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhcc
Q 014613           81 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQ  160 (421)
Q Consensus        81 ~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~  160 (421)
                      ..|+.++..++.+..|.+|+.|++.||+.++........    .+.-+++|+|.++|++.+++++++++++.|..+|+..
T Consensus        94 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  169 (477)
T KOG2319|consen   94 ENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSI----APNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRRE  169 (477)
T ss_pred             hhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhc----ccccccccccceeeeccccCchhhhhhHHHHHHHHHh
Confidence            999999999999999999999999999999987765332    2223999999999999999999999999999999999


Q ss_pred             ccccCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccccCCCCCccccccchhhhhhhcccc-
Q 014613          161 SRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQ-  239 (421)
Q Consensus       161 s~L~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  239 (421)
                      ..+.++.+||++++..+..|+.+....++.+++.+|+..|..+.+...++..-....      ..+.+.+....-.... 
T Consensus       170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i------~~~~~~~~~~~~~~~~~  243 (477)
T KOG2319|consen  170 GPLEGENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDI------PVLEQIPELSKRVALAS  243 (477)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccc------cccccccchhHHHHHHH
Confidence            988999999999999999999999999999999999999999998887764421111      1111100000000000 


Q ss_pred             -CCCCCcccccCCCCCCccccccccccccccCCCccCCCChHHHHhhccchhhchh-hhhccccCccccccccCCcchhh
Q 014613          240 -GVNSTKEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEE-KASQVFQEYPYLFAQVGDLTISD  317 (421)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~g~~~~~~~~-~~~~~~~~y~~l~a~~~dl~~~d  317 (421)
                       ....-+.. ..++..     ...+ ..... .++-..-...|.|++|+-.++..- ..-..++.|+|+.+...+++.+.
T Consensus       244 ~~~~~i~~~-~~~~~~-----~~~~-~~~~~-~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~  315 (477)
T KOG2319|consen  244 QRLALIREL-LTPRDK-----KEAC-ALNCE-KPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRA  315 (477)
T ss_pred             HHHHHHHHh-hcchhh-----hHHH-HHHHH-HHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhccc
Confidence             00000000 000000     0000 00011 133344456678899977777654 56667799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHhhhhhhhcCCCCCcccc
Q 014613          318 VEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVE  372 (421)
Q Consensus       318 v~~ll~~yk~lv~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (421)
                      ++.+++.|+.++++|.+++++++.. ..+.+.++..|.-.+..+.+..+++...+
T Consensus       316 ~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~q~~~~~~~~~~~~~~~~~e  369 (477)
T KOG2319|consen  316 PERLSGEEKYYLFTYACASSDIFDA-TLLSLTISSLQDFAREHTAYESEEVSLRE  369 (477)
T ss_pred             HHhhhccchhhhhhhhhhhhhhhhh-hhhhcccchhhhhhhhccchhhhhhhhcc
Confidence            9999999999999999999999998 55666677777665555556655544433

>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=4.1e-15  Score=156.56  Aligned_cols=189  Identities=22%  Similarity=0.300  Sum_probs=149.3

Q ss_pred             CCCCHHHHHHHHH-HHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHh---ccCCCCccccccccCChhhHHHHHHHH
Q 014613           12 AGCSEEELDSAGE-GLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ---QFVRPENLDIKASFQNETSWLLAQKEL   87 (421)
Q Consensus        12 ~~~seeele~i~e-~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~---~fItpe~LgI~~~~~~e~~~~~Ai~eL   87 (421)
                      ...+++++|.+.| +|.+.|+..+-..|.........+|-.++. ++.-+   .--.+..||+--.-.....++.....+
T Consensus       332 ~~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l~~~h~~dGsl~~-l~en~~vvr~~~~~~lG~~~~~Ps~~~mEqvk~k~  410 (651)
T KOG2320|consen  332 SLLSETPLEAVLESALHKSVLKPLKPNLSAQLPPVHSKDGSLQQ-LKENQDVVRAANPTALGVFLSTPSDVLMEQVKQKF  410 (651)
T ss_pred             cccCcchHHHHHHHHHHHhhccccchhHhhhcchhhhhccHHHH-HhcccceecccCccccceeccCCcHHHHHHHHHHH
Confidence            3456789999988 799999999998888887766677765543 33211   233466888833334445567788889


Q ss_pred             HhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCch
Q 014613           88 QKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEA  167 (421)
Q Consensus        88 ~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~  167 (421)
                      .+|....+|..|+..++++|+.|+..+.+   ...+...|||||||+|.||+.|++.+.+..+++||.+|..++.+.||.
T Consensus       411 ~~m~r~YSP~kkl~~Llk~ckLly~~~~~---~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~~geg  487 (651)
T KOG2320|consen  411 TAMQRRYSPSKKLHALLKACKLLYAGMGG---DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLLSGEG  487 (651)
T ss_pred             HHHHHhhChHHHHHHHHHHHHHHHHHhcc---CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhhcCcc
Confidence            99999999999999999999999988753   235678899999999999999999999999999999999999999999


Q ss_pred             hhHHhhHHHHHHHHHhCCCCC-CC-CCHHHHHHHHHHHH
Q 014613          168 AYFFTNMLSAESFISNIDAQA-LS-MEESEFERNMESAQ  204 (421)
Q Consensus       168 gYyLTnLeAAv~FI~~ld~es-Ls-I~~~eF~~~m~~a~  204 (421)
                      |||||++.+|+++|.++.... .. ---.|-+..+..|.
T Consensus       488 gYYLTs~~~al~~iks~~~~~ra~r~l~~e~r~Slhqw~  526 (651)
T KOG2320|consen  488 GYYLTSLYGALEHIKSLGRITRAPRGLSVERRDSLHQWE  526 (651)
T ss_pred             chhHHHHHHHHHHHhccccccccccccchhhhHHHHHHH
Confidence            999999999999999998765 22 11134455555553

>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.5e-10  Score=119.62  Aligned_cols=168  Identities=33%  Similarity=0.407  Sum_probs=143.0

Q ss_pred             HHHHHHHHhHHHHhcCCCC-CChhhhHHHHHHHHHHhccCCCCccccccccCCh---hhHHHHHHHHHhcccCCChHH-H
Q 014613           25 GLEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNE---TSWLLAQKELQKINMYKAPRD-K   99 (421)
Q Consensus        25 ~LEkyVm~kLYd~lF~~~~-ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e---~~~~~Ai~eL~kIn~~kSP~D-K   99 (421)
                      .++.+.+.++|..++.... .+.+.|..++.+++.+ +++++..++|+..-+..   .....+...+..|+.+..|++ |
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  259 (477)
T KOG2319|consen  181 TCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRL-QGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLTPRDKK  259 (477)
T ss_pred             HHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhh-cccchhhccccccccccchhHHHHHHHHHHHHHHHhhcchhhh
Confidence            4555566666666666654 4678899999999998 89999999998765432   256788899999999999999 7


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccccCchhhHHhhHHHHHH
Q 014613          100 LVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAES  179 (421)
Q Consensus       100 L~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L~gE~gYyLTnLeAAv~  179 (421)
                      ..|.++|++.|++.+..    ......++|.|+|.++|.+++.+..++.+++.|+.+|+.+.++.|+.+|++.++.++..
T Consensus       260 ~~~~~~~~~~~f~~l~~----~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  335 (477)
T KOG2319|consen  260 EACALNCEKPIFSALKI----TDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASS  335 (477)
T ss_pred             HHHHHHHHHHHHhhhhc----cchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhh
Confidence            99999999999987753    34567899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCHHHHH
Q 014613          180 FISNIDAQALSMEESEFE  197 (421)
Q Consensus       180 FI~~ld~esLsI~~~eF~  197 (421)
                      ++...+..++.|.+.+.-
T Consensus       336 ~~~~~~~~~~~i~~~q~~  353 (477)
T KOG2319|consen  336 DIFDATLLSLTISSLQDF  353 (477)
T ss_pred             hhhhhhhhhcccchhhhh
Confidence            999999999998885544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	421
2efc_A	267	Ara7-GdpATVPS9A Length = 267		6e-97
2efh_A	267	Ara7-GdpATVPS9A(D185N) Length = 267		2e-96
2ot3_A	274	Crystal Structure Of Rabex-5 Vps9 Domain In Complex		7e-26
1txu_A	273	Crystal Structure Of The Vps9 Domain Of Rabex-5 Len		4e-24

>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A Length = 267

Iteration: 1
 Score =  350 bits (899), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 163/209 (77%), Positives = 187/209 (89%)
Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 59  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 118
Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXX 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV           
Sbjct: 119 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 178
Query: 121 XXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
             EN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 179 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 238
Query: 181 ISNIDAQALSMEESEFERNMESAQALLSG 209
           ISNIDA+++S++E+EFE+NMESA+A +SG
Sbjct: 239 ISNIDAKSISLDEAEFEKNMESARARISG 267

>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N) Length = 267

Iteration: 1
 Score =  349 bits (895), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 162/209 (77%), Positives = 187/209 (89%)
Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 59  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 118
Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXX 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV           
Sbjct: 119 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 178
Query: 121 XXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
             EN PGA+EFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 179 SNENAPGANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 238
Query: 181 ISNIDAQALSMEESEFERNMESAQALLSG 209
           ISNIDA+++S++E+EFE+NMESA+A +SG
Sbjct: 239 ISNIDAKSISLDEAEFEKNMESARARISG 267

>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With Nucleotide Free Rab21 Length = 274

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 18/193 (9%)
Query: 17  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 70
           E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +     Q    P N DI
Sbjct: 79  ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 138
Query: 71  KASFQNETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGA 128
                 E S ++ +     I M   + PRDKL CI  C K                P  A
Sbjct: 139 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASA 189
Query: 129 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 187
           D+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ
Sbjct: 190 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 249
Query: 188 ALSMEESEFERNM 200
           +L++ + +F+R M
Sbjct: 250 SLNLSQEDFDRYM 262

>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5 Length = 273

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 17  EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 70
           E ++   + +EKY+ T+L+  VF     DD K D  + ++I  +     Q    P N DI
Sbjct: 81  ERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQXLCVPVNEDI 140
Query: 71  KASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 130
               +     + A  ++ + +  + PRDKL CI  C K                P  AD+
Sbjct: 141 P---EVSDXVVKAITDIIEXDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADD 193
Query: 131 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-VGEAAYFFTNMLSAESFISNIDAQAL 189
           FLP LIY+ +K NPP+L SN+ YI R+   SRL  GE  Y+FTN+  A +FI  +DAQ+L
Sbjct: 194 FLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDAQSL 253
Query: 190 SMEESEFER 198
           ++ + +F+R
Sbjct: 254 NLSQEDFDR 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
2efe_A	267	Similarity to vacuolar protein sorting-associated	1e-67
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	3e-50
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A* Length = 267

 Score =  215 bits (548), Expect = 1e-67
 Identities = 175/209 (83%), Positives = 199/209 (95%)

Query: 1   MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQ 60
           MEAAFRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS  ++V  DE+L +K++LVQ
Sbjct: 59  MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQ 118

Query: 61  QFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 120
           QF+ PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA
Sbjct: 119 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 178

Query: 121 LNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 180
            NEN PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESF
Sbjct: 179 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 238

Query: 181 ISNIDAQALSMEESEFERNMESAQALLSG 209
           ISNIDA+++S++E+EFE+NMESA+A +SG
Sbjct: 239 ISNIDAKSISLDEAEFEKNMESARARISG 267

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A Length = 274

 Score =  170 bits (431), Expect = 3e-50
 Identities = 68/200 (34%), Positives = 109/200 (54%), Gaps = 10/200 (5%)

Query: 11  WAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLD 69
                 E ++   + +EKY+MT+L+  VF     DD K D  + ++I  ++ +V P+ L 
Sbjct: 73  RGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLC 131

Query: 70  IKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPP 126
           +  +          + A  ++ +++  + PRDKL CI  C K I     NA       P 
Sbjct: 132 VPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI----FNAIKITKNEPA 187

Query: 127 GADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNID 185
            AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +D
Sbjct: 188 SADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLD 247

Query: 186 AQALSMEESEFERNMESAQA 205
           AQ+L++ + +F+R M    +
Sbjct: 248 AQSLNLSQEDFDRYMSGQTS 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 67/230 (29%)

Query: 15  SEEELDSAGEGLEKYVMTKLFTRVFASIPDD-----VKTD--------EQLSEKIALVQQ 61
           +   LD     L    +  L  +     P D     + T+        E + + +A    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 62  F--VRPENLD--IKASFQNETSWLLAQKELQKINMYKA----PRD-----KLVCIL---- 104
           +  V  + L   I++S        L   E +K  M+      P        L+ ++    
Sbjct: 347 WKHVNCDKLTTIIESSLNV-----LEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 105 --NCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKA---NPPQLHSNLLYIQRYRR 159
             +   V+ N L   S+ + + P  +   +P  IY+ +K    N   LH ++  +  Y  
Sbjct: 400 IKSDVMVVVNKLHKYSL-VEKQPKESTISIP-SIYLELKVKLENEYALHRSI--VDHYNI 455

Query: 160 QSRLVGEAA-------YFFTNMLSAESFI----SNIDAQALSMEESEFER 198
                 +         YF+       S I     NI+        + F  
Sbjct: 456 PKTFDSDDLIPPYLDQYFY-------SHIGHHLKNIE---HPERMTLFRM 495

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 67/437 (15%), Positives = 134/437 (30%), Gaps = 145/437 (33%)

Query: 24  EGLEKYVMTKLFTRVFASI---PDDVKTDEQL-----SEKIALVQQFVRPENLDIKASFQ 75
           + + K +++K        I    D V    +L     S++  +VQ+FV       +   +
Sbjct: 39  QDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLR 88

Query: 76  NETSWLLA--QKELQ----KINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGAD 129
               +L++  + E +       MY   RD+L                     N+N     
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--------------------YNDNQV--- 125

Query: 130 EFLPVLIYVTIKANPPQLHSNLLYIQRYRR----------QSRLVGEAAYFFTNMLSAES 179
            F      V+      +L   LL ++  +           ++ +  +          +  
Sbjct: 126 -FAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------CLSYK 175

Query: 180 FISNIDAQA--LSM-EESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQS 236
               +D +   L++   +  E  +E  Q LL  +        N    S+   +++  I S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKLRIHS 229

Query: 237 KHQGVNST-KEKEH------LTPVRSSESKSVKK--------VTFAKDQEPITKVPSLSE 281
               +    K K +      L  V+++  K+           +T        T+      
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLT--------TR------ 273

Query: 282 LENKGATMLLKEEKASQVFQEYPYLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGS 341
              K  T  L     + +  ++         LT  +V+ LL  Y             L  
Sbjct: 274 --FKQVTDFLSAATTTHISLDHH-----SMTLTPDEVKSLLLKY-------------LDC 313

Query: 342 AASSLPSSVL---PSQVQLQVETMKAPEEHKRVE--LNDESEKDTSETNDSSNQVLNSNE 396
               LP  VL   P ++ +  E+++  +     +   +   +K  +   +SS  VL   E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDK-LTTIIESSLNVLEPAE 370

Query: 397 EK-------VESQLPED 406
            +       V    P  
Sbjct: 371 YRKMFDRLSV---FPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
2efe_A	267	Similarity to vacuolar protein sorting-associated	100.0
2ot3_A	274	RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain	100.0

>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*

Probab=100.00  E-value=3.5e-50  Score=390.92  Aligned_cols=208  Identities=84%  Similarity=1.283  Sum_probs=195.5

Q ss_pred             ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCChhhhHHHHHHHHHHhccCCCCccccccccCChhhH
Q 014613            1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSW   80 (421)
Q Consensus         1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~e~~~   80 (421)
                      |+..|+.||+|+++++++++.++++||+|||.+||+++|.+.+++.++|..|++||+.|++||+|+||||++.+.++.+|
T Consensus        59 ~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v~~~ly~~lf~~~~~d~~~D~~L~~ki~~l~~~i~~~~L~I~~~~~~~~~~  138 (267)
T 2efe_A           59 MEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSW  138 (267)
T ss_dssp             HHHHHHSCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHTTTCCGGGGTCCGGGCCTTCS
T ss_pred             HHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHccCCHHHcCCCCccCCcccH
Confidence            57889999999999999999999999999999999999999888889999999999999669999999999999888899


Q ss_pred             HHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhcc
Q 014613           81 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQ  160 (421)
Q Consensus        81 ~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~  160 (421)
                      ..|+++|++|+.++||+|||.||++||+.|++.+...+..+.+.++|||||||+||||||||+||+|+||++||++|+++
T Consensus       139 ~~A~~eL~ki~~~~sP~dKl~~l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~  218 (267)
T 2efe_A          139 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRE  218 (267)
T ss_dssp             HHHHHHHHTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCc
Confidence            99999999999999999999999999999999886544344567899999999999999999999999999999999999


Q ss_pred             ccccCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhc
Q 014613          161 SRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLS  208 (421)
Q Consensus       161 s~L~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a~~~~~  208 (421)
                      +.+.||.|||||||++|++||++++.++|+|+++||++.|++|++.+.
T Consensus       219 ~~l~gE~gY~lt~l~aA~~fI~~l~~~~L~i~~~ef~~~~~~~~~~~~  266 (267)
T 2efe_A          219 SKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNMESARARIS  266 (267)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHC--
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999988654

>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A

Probab=100.00  E-value=2e-43  Score=345.02  Aligned_cols=195  Identities=34%  Similarity=0.633  Sum_probs=177.5

Q ss_pred             ChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCC-CChhhhHHHHHHHHHHhccCCCCccccccccCC---
Q 014613            1 MEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQN---   76 (421)
Q Consensus         1 me~~~~~hp~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~-ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~---   76 (421)
                      |..+|+.|  |++ ++++++.++++||+|||.+||+.+|.+.. .+..+|..|++||+.| +||+|+||||+..+..   
T Consensus        66 ~~~~l~~~--~~~-s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L-~~i~~~~L~I~~~~~~p~~  141 (274)
T 2ot3_A           66 VAERMQTR--GKV-PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEV  141 (274)
T ss_dssp             HHHHHHST--TCC-CHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHH
T ss_pred             HHHHHHHH--hcc-CHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHH-cCCCHHHcCCCcccCCchH
Confidence            45678888  987 78899999999999999999999999975 4578899999999999 7999999999987643   


Q ss_pred             hhhHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHH
Q 014613           77 ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQR  156 (421)
Q Consensus        77 e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~  156 (421)
                      ...|..|+++|++|+.++||+|||.||++||+.|++.+...    .+.++|||||||+||||||||+||+|+||++||++
T Consensus       142 ~~~~~~A~~eL~~i~~~~sP~dKL~~l~~~~k~I~~~l~~~----~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI~~  217 (274)
T 2ot3_A          142 SDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITR  217 (274)
T ss_dssp             HHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            23699999999999999999999999999999999988642    35679999999999999999999999999999999


Q ss_pred             hhccccc-cCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 014613          157 YRRQSRL-VGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESA  203 (421)
Q Consensus       157 F~~~s~L-~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~~a  203 (421)
                      |++++.+ .||.|||||||++|+.||++++.++|+|+++||++.|..+
T Consensus       218 F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~~~  265 (274)
T 2ot3_A          218 FCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQ  265 (274)
T ss_dssp             HSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHTTS
T ss_pred             HcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHhhc
Confidence            9999865 7999999999999999999999999999999999998744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d2ot3a1	249	a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor	2e-57

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 249

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  186 bits (474), Expect = 2e-57
 Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 10/197 (5%)

Query: 9   PLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASI-PDDVKTDEQLSEKIALVQQFVRPEN 67
                   E ++   + +EKY+MT+L+  VF     DD K D  + ++I  ++ +V P+ 
Sbjct: 56  QTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQM 114

Query: 68  LDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 124
           L +  +          + A  ++ +++  + PRDKL CI  C K I N +          
Sbjct: 115 LCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNE 170

Query: 125 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISN 183
           P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  
Sbjct: 171 PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEK 230

Query: 184 IDAQALSMEESEFERNM 200
           +DAQ+L++ + +F+R M
Sbjct: 231 LDAQSLNLSQEDFDRYM 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d2ot3a1	249	Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Hom	100.0

>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: VPS9 domain
superfamily: VPS9 domain
family: VPS9 domain
domain: Rab5 GDP/GTP exchange factor (Rabex-5)
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=5.4e-44  Score=340.56  Aligned_cols=188  Identities=36%  Similarity=0.653  Sum_probs=173.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCC-CChhhhHHHHHHHHHHhccCCCCccccccccCC---hhhHHHHH
Q 014613            9 PLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQN---ETSWLLAQ   84 (421)
Q Consensus         9 p~W~~~seeele~i~e~LEkyVm~kLYd~lF~~~~-ed~e~D~~L~~KI~~L~~fItpe~LgI~~~~~~---e~~~~~Ai   84 (421)
                      +.|.+.++++++.++++||+|||++||+++|.+.. .+..+|..|++||+.| +|++|+||||+.....   ..+|..|+
T Consensus        56 ~~~~~~~~~~~~~~~~~vEk~i~~~ly~~~f~~~~~~~~~~D~~l~~~i~~l-~~i~~~~l~i~~~~~~~~~~~~~~~A~  134 (249)
T d2ot3a1          56 QTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRAL-RWVTPQMLCVPVNEDIPEVSDMVVKAI  134 (249)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHT-TTCCTTTTTCCCCTTSHHHHHHHHHHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHh-ccCCHHhcCCccccccchhhhHHHHHH
Confidence            46899999999999999999999999999999864 5678899999999998 8999999999876543   35799999


Q ss_pred             HHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHhcCCcchhhHHHHHHHhhccccc-
Q 014613           85 KELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-  163 (421)
Q Consensus        85 ~eL~kIn~~kSP~DKL~cIl~~~k~I~~~i~~~s~~~~~~~~gADDfLPILIYVIIKAn~p~L~SnI~YI~~F~~~s~L-  163 (421)
                      .+|++|+.++||+|||.||++||+.|++++...    .+.++|||||||+||||||||+||+|+|||+||++|++++++ 
T Consensus       135 ~~L~~i~~~~sP~dKl~~i~~~~~~I~~~~~~~----~~~~~~ADd~LP~liyviika~~~~l~S~i~yI~~F~~~~~l~  210 (249)
T d2ot3a1         135 TDIIEMDSKRVPRDKLACITKCSKHIFNAIKIT----KNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLM  210 (249)
T ss_dssp             HHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHH----HSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTT
T ss_pred             HHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhh----cCCCCChhHHHHHHHHHHHHcChhhHHHHHHHHHHHhChhhcc
Confidence            999999999999999999999999999987542    356789999999999999999999999999999999998865 


Q ss_pred             cCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 014613          164 VGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNME  201 (421)
Q Consensus       164 ~gE~gYyLTnLeAAv~FI~~ld~esLsI~~~eF~~~m~  201 (421)
                      .||.|||||||++||+||+++|.++|+|+++||++.|.
T Consensus       211 ~gE~~Y~lt~l~aAv~fI~~ld~~~L~i~~~~f~~~~~  248 (249)
T d2ot3a1         211 TGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS  248 (249)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHhhcC
Confidence            79999999999999999999999999999999999884