Citrus Sinensis ID: 014640
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | 2.2.26 [Sep-21-2011] | |||||||
| Q5HZ00 | 422 | Solanesyl diphosphate syn | yes | no | 0.990 | 0.988 | 0.718 | 1e-174 | |
| Q653T6 | 430 | Solanesyl-diphosphate syn | yes | no | 0.890 | 0.872 | 0.725 | 1e-157 | |
| Q7S565 | 449 | Probable hexaprenyl pyrop | N/A | no | 0.790 | 0.741 | 0.416 | 8e-70 | |
| Q33DR2 | 409 | Decaprenyl-diphosphate sy | yes | no | 0.814 | 0.838 | 0.394 | 7e-69 | |
| Q6CBH3 | 452 | Probable hexaprenyl pyrop | yes | no | 0.809 | 0.754 | 0.378 | 2e-67 | |
| Q54VJ9 | 456 | Decaprenyl-diphosphate sy | yes | no | 0.686 | 0.633 | 0.412 | 1e-66 | |
| Q5T2R2 | 415 | Decaprenyl-diphosphate sy | yes | no | 0.774 | 0.785 | 0.398 | 2e-66 | |
| P72580 | 323 | Prenyl transferase OS=Syn | N/A | no | 0.745 | 0.972 | 0.407 | 9e-64 | |
| Q0INZ4 | 372 | Probable solanesyl-diphos | no | no | 0.710 | 0.803 | 0.400 | 6e-62 | |
| Q75HZ9 | 403 | Solanesyl-diphosphate syn | no | no | 0.745 | 0.779 | 0.384 | 1e-61 |
| >sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 306/426 (71%), Positives = 356/426 (83%), Gaps = 9/426 (2%)
Query: 1 MLIYRGLSRIS-RISKKTSF--GRRWLPSH--PLLSGASHSAAAAAADSSVKVLGCREAY 55
ML R ++RIS + + SF + L SH ++ HS + DS K CR Y
Sbjct: 1 MLFTRSVARISSKFLRNRSFYGSSQSLASHRFAIIPDQGHSCS----DSPHKGYVCRTTY 56
Query: 56 SWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 115
S P G HQ++HQSSS++EE+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEY
Sbjct: 57 SLKSPVFGGFSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEY 116
Query: 116 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 175
FFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR RQ+ IAEITEMIHVA
Sbjct: 117 FFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVA 176
Query: 176 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 235
SLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT V
Sbjct: 177 SLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAV 236
Query: 236 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 295
EHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+Y
Sbjct: 237 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEY 296
Query: 296 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE 355
G+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +
Sbjct: 297 GRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEK 356
Query: 356 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 415
D NVDIALEYLGKS+GIQ+ RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHR
Sbjct: 357 DPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHR 416
Query: 416 VITRNK 421
VITRNK
Sbjct: 417 VITRNK 422
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May be involved in the supply of solanesyl diphosphate for ubiquinone-9 biosynthesis in mitochondria. Synthesizes C25 to C45 medium / long-chain products depending on the type of substrate available. Can use geranyl diphosphate, farnesyl diphosphate or geranylgeranyl diphosphate as substrates, but not dimethylallyl diphosphate. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 5 |
| >sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment) OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SPS2 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| 27261729 | 426 | geranylgeranyl diphosphate synthase [Cit | 1.0 | 0.988 | 0.981 | 0.0 | |
| 12055493 | 416 | geranyl diphosphat synthase [Quercus rob | 0.973 | 0.985 | 0.804 | 0.0 | |
| 449433571 | 423 | PREDICTED: solanesyl diphosphate synthas | 0.992 | 0.988 | 0.784 | 0.0 | |
| 255578548 | 417 | geranylgeranyl pyrophosphate synthase, p | 0.990 | 1.0 | 0.819 | 0.0 | |
| 343466169 | 423 | geranyl diphosphate synthase [Siraitia g | 0.992 | 0.988 | 0.776 | 0.0 | |
| 359489044 | 422 | PREDICTED: decaprenyl-diphosphate syntha | 0.990 | 0.988 | 0.769 | 0.0 | |
| 11322972 | 321 | geranyl diphosphate synthase [Citrus sin | 0.762 | 1.0 | 0.993 | 0.0 | |
| 350538483 | 415 | geranyl pyrophosphate synthase [Solanum | 0.976 | 0.990 | 0.767 | 0.0 | |
| 356514290 | 480 | PREDICTED: probable hexaprenyl pyrophosp | 0.864 | 0.758 | 0.831 | 1e-180 | |
| 356563558 | 419 | PREDICTED: probable hexaprenyl pyrophosp | 0.964 | 0.968 | 0.768 | 1e-179 |
| >gi|27261729|gb|AAN86061.1| geranylgeranyl diphosphate synthase [Citrus unshiu] | Back alignment and taxonomy information |
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Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/426 (98%), Positives = 419/426 (98%), Gaps = 5/426 (1%)
Query: 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP 60
MLIYRGLSRISRISKKT FGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP
Sbjct: 1 MLIYRGLSRISRISKKTPFGRRWLPSHPLLSGASHSAAAAAADSSVKVLGCREAYSWSLP 60
Query: 61 ALHGIRHQIHHQSSSVIE-----EQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 115
ALHGIRHQIHHQSSSVIE EQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY
Sbjct: 61 ALHGIRHQIHHQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEY 120
Query: 116 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 175
FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA
Sbjct: 121 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 180
Query: 176 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 235
SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV
Sbjct: 181 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 240
Query: 236 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 295
EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY
Sbjct: 241 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDY 300
Query: 296 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE 355
GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI+HGIITAPILFAMEEFPQLRTVVEQGFE
Sbjct: 301 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIQHGIITAPILFAMEEFPQLRTVVEQGFE 360
Query: 356 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 415
DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDV KSRRALLDLTHR
Sbjct: 361 DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVRKSRRALLDLTHR 420
Query: 416 VITRNK 421
VITRNK
Sbjct: 421 VITRNK 426
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Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12055493|emb|CAC20852.1| geranyl diphosphat synthase [Quercus robur] | Back alignment and taxonomy information |
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| >gi|449433571|ref|XP_004134571.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449490572|ref|XP_004158644.1| PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255578548|ref|XP_002530137.1| geranylgeranyl pyrophosphate synthase, putative [Ricinus communis] gi|223530362|gb|EEF32253.1| geranylgeranyl pyrophosphate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|343466169|gb|AEM42978.1| geranyl diphosphate synthase [Siraitia grosvenorii] | Back alignment and taxonomy information |
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| >gi|359489044|ref|XP_002268229.2| PREDICTED: decaprenyl-diphosphate synthase subunit 1 [Vitis vinifera] gi|296090181|emb|CBI40000.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|11322972|emb|CAC16851.1| geranyl diphosphate synthase [Citrus sinensis] | Back alignment and taxonomy information |
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| >gi|350538483|ref|NP_001234089.1| geranyl pyrophosphate synthase [Solanum lycopersicum] gi|82659078|gb|ABB88703.1| geranyl pyrophosphate synthase [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|356514290|ref|XP_003525839.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356563558|ref|XP_003550028.1| PREDICTED: probable hexaprenyl pyrophosphate synthase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 421 | ||||||
| TAIR|locus:2062315 | 422 | GPS1 "geranyl diphosphate synt | 0.881 | 0.879 | 0.719 | 8.3e-138 | |
| ZFIN|ZDB-GENE-030131-4430 | 411 | pdss1 "prenyl (decaprenyl) dip | 0.764 | 0.783 | 0.385 | 2.5e-58 | |
| SGD|S000000207 | 473 | COQ1 "Hexaprenyl pyrophosphate | 0.396 | 0.353 | 0.392 | 2e-57 | |
| ASPGD|ASPL0000038406 | 456 | AN10340 [Emericella nidulans ( | 0.603 | 0.557 | 0.415 | 2.6e-57 | |
| UNIPROTKB|E1BZW8 | 366 | PDSS1 "Uncharacterized protein | 0.824 | 0.948 | 0.358 | 1.2e-56 | |
| CGD|CAL0005672 | 510 | orf19.7478 [Candida albicans ( | 0.377 | 0.311 | 0.369 | 7.1e-56 | |
| UNIPROTKB|F6RJN8 | 418 | PDSS1 "Uncharacterized protein | 0.774 | 0.779 | 0.375 | 1.8e-55 | |
| MGI|MGI:1889278 | 409 | Pdss1 "prenyl (solanesyl) diph | 0.814 | 0.838 | 0.367 | 2.3e-55 | |
| UNIPROTKB|F1PV51 | 365 | PDSS1 "Uncharacterized protein | 0.798 | 0.920 | 0.372 | 2.9e-55 | |
| UNIPROTKB|F1RTW8 | 410 | PDSS1 "Uncharacterized protein | 0.774 | 0.795 | 0.383 | 6.1e-55 |
| TAIR|locus:2062315 GPS1 "geranyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 267/371 (71%), Positives = 307/371 (82%)
Query: 51 CREAYSWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLA 110
CR YS P G HQ++HQSSS++EE+LDPFSLVADELS+L+ +LR MV+AEVPKLA
Sbjct: 52 CRTTYSLKSPVFGGFSHQLYHQSSSLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLA 111
Query: 111 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 170
SAAEYFFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR RQ+ IAEITE
Sbjct: 112 SAAEYFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRVRQRGIAEITE 171
Query: 171 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXX 230
MIHVASLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA+LKN
Sbjct: 172 MIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVAL 231
Query: 231 XXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI 290
GETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+
Sbjct: 232 LATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAV 291
Query: 291 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVV 350
LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV
Sbjct: 292 LAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVV 351
Query: 351 EQGFEDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALL 410
+Q +D NVDIALEYLGKS+GIQ+ REL I SLPE ++EDV +SRRAL+
Sbjct: 352 DQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALI 411
Query: 411 DLTHRVITRNK 421
DLTHRVITRNK
Sbjct: 412 DLTHRVITRNK 422
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| ZFIN|ZDB-GENE-030131-4430 pdss1 "prenyl (decaprenyl) diphosphate synthase, subunit 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| SGD|S000000207 COQ1 "Hexaprenyl pyrophosphate synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000038406 AN10340 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BZW8 PDSS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| CGD|CAL0005672 orf19.7478 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6RJN8 PDSS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1889278 Pdss1 "prenyl (solanesyl) diphosphate synthase, subunit 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PV51 PDSS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RTW8 PDSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q33DR2 | DPS1_MOUSE | 2, ., 5, ., 1, ., 9, 1 | 0.3945 | 0.8147 | 0.8386 | yes | no |
| Q5HZ00 | SPS3_ARATH | 2, ., 5, ., 1, ., 8, 5 | 0.7183 | 0.9904 | 0.9881 | yes | no |
| Q653T6 | SPS1_ORYSJ | 2, ., 5, ., 1, ., 8, 4 | 0.7253 | 0.8907 | 0.8720 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 421 | |||
| PLN02890 | 422 | PLN02890, PLN02890, geranyl diphosphate synthase | 0.0 | |
| TIGR02749 | 322 | TIGR02749, prenyl_cyano, solanesyl diphosphate syn | 1e-100 | |
| PLN02857 | 416 | PLN02857, PLN02857, octaprenyl-diphosphate synthas | 3e-88 | |
| CHL00151 | 323 | CHL00151, preA, prenyl transferase; Reviewed | 3e-87 | |
| cd00685 | 259 | cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat | 7e-78 | |
| COG0142 | 322 | COG0142, IspA, Geranylgeranyl pyrophosphate syntha | 2e-75 | |
| cd00867 | 236 | cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S | 2e-52 | |
| pfam00348 | 260 | pfam00348, polyprenyl_synt, Polyprenyl synthetase | 2e-48 | |
| TIGR02748 | 319 | TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn | 1e-47 | |
| PRK10888 | 323 | PRK10888, PRK10888, octaprenyl diphosphate synthas | 5e-46 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 1e-39 | |
| PRK10581 | 299 | PRK10581, PRK10581, geranyltranstransferase; Provi | 7e-17 |
| >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase | Back alignment and domain information |
|---|
Score = 692 bits (1786), Expect = 0.0
Identities = 324/427 (75%), Positives = 366/427 (85%), Gaps = 11/427 (2%)
Query: 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSGASHSAA------AAAADSSVKVLGCREA 54
ML+ R ++RIS + G S AS AA + S+ KV+GCR
Sbjct: 1 MLLSRRVARIS-----ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGT 55
Query: 55 YSWSLPALHGIRHQIHHQSSSVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAE 114
YS S LHG ++Q+ HQSSS++EEQLDPFSLVADELS+LA +LRSMVVAEVPKLASAAE
Sbjct: 56 YSVSSRWLHGFQYQVRHQSSSLVEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAE 115
Query: 115 YFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 174
YFFK+GVEGKRFRPTVLLLMATALNV +PE GV D +A+ELRTRQQ IAEITEMIHV
Sbjct: 116 YFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHV 175
Query: 175 ASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATV 234
ASLLHDDVLDDADTRRG+GSLN VMGNKL+VLAGDFLLSRACVALA+LKNTEVV+LLAT
Sbjct: 176 ASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATA 235
Query: 235 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFD 294
VEHLVTGETMQ+T+S +QR SMDYYMQKTYYKTASLISNSCKA+A+LAGQTAEVA+LAF+
Sbjct: 236 VEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFE 295
Query: 295 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGF 354
YG+NLGLA+QLIDDVLDFTGTSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV++GF
Sbjct: 296 YGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGF 355
Query: 355 EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 414
++ +NVDIALEYLGKSRGIQ+TRELA +HANLAAAAI+SLPE +DEDV SRRAL+DLT
Sbjct: 356 DNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTE 415
Query: 415 RVITRNK 421
RVITRNK
Sbjct: 416 RVITRNK 422
|
Length = 422 |
| >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase | Back alignment and domain information |
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| >gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase | Back alignment and domain information |
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| >gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed | Back alignment and domain information |
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| >gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
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| >gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| PLN02890 | 422 | geranyl diphosphate synthase | 100.0 | |
| TIGR02749 | 322 | prenyl_cyano solanesyl diphosphate synthase. Membe | 100.0 | |
| PLN02857 | 416 | octaprenyl-diphosphate synthase | 100.0 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 100.0 | |
| CHL00151 | 323 | preA prenyl transferase; Reviewed | 100.0 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 100.0 | |
| COG0142 | 322 | IspA Geranylgeranyl pyrophosphate synthase [Coenzy | 100.0 | |
| KOG0776 | 384 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| PRK10581 | 299 | geranyltranstransferase; Provisional | 100.0 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 100.0 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 100.0 | |
| cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. | 100.0 | |
| KOG0777 | 322 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| KOG0711 | 347 | consensus Polyprenyl synthetase [Coenzyme transpor | 100.0 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.92 | |
| PF07307 | 212 | HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE | 97.81 | |
| TIGR01559 | 336 | squal_synth farnesyl-diphosphate farnesyltransfera | 96.89 | |
| PF00494 | 267 | SQS_PSY: Squalene/phytoene synthase; InterPro: IPR | 96.85 | |
| cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase | 96.63 | |
| PLN02632 | 334 | phytoene synthase | 96.35 | |
| TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this fam | 96.17 | |
| TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes | 96.03 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 90.86 | |
| COG1562 | 288 | ERG9 Phytoene/squalene synthetase [Lipid metabolis | 89.16 | |
| PRK12884 | 279 | ubiA prenyltransferase; Reviewed | 87.83 | |
| PRK12882 | 276 | ubiA prenyltransferase; Reviewed | 80.25 |
| >PLN02890 geranyl diphosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=671.22 Aligned_cols=418 Identities=77% Similarity=1.081 Sum_probs=381.8
Q ss_pred ChhhhhhhhhhcccccCccccccccCCCCccc----cccchhhhhcCCcccccCCcccCCChhhhhhhcccccccCChhh
Q 014640 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSG----ASHSAAAAAADSSVKVLGCREAYSWSLPALHGIRHQIHHQSSSV 76 (421)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 76 (421)
|+|+|+++||+ +.+.+++||+.+.+.+.+ ..+.+.+++.++++||.|||....|.+..++.+.++.+++..+.
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (422)
T PLN02890 1 MLLSRRVARIS---ATSGGGRGAYGCSQSLASSRAALLGRHGHPLSQSTSKVVGCRGTYSVSSRWLHGFQYQVRHQSSSL 77 (422)
T ss_pred CCcchHHHHHh---ccccccccchhhhhhhcccccccCCCCcccccCCCccccccccceeechhhhhhhhhhchhcccch
Confidence 89999999888 778889999999664333 33556778889999999999999999999999999999988889
Q ss_pred hhhhcCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhH
Q 014640 77 IEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALAT 156 (421)
Q Consensus 77 ~~~~~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~ 156 (421)
++...+++..+.+|++.|+++|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|...++..++...+....
T Consensus 78 ~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~ 157 (422)
T PLN02890 78 VEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVAS 157 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhcc
Confidence 99999999999999999999999999999999999999999876779999999999999999864322100000011123
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014640 157 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 236 (421)
Q Consensus 157 ~~~~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~ 236 (421)
+.+++++.+|+++||||+||||||||||++++|||+||+|.+||++.|||+||||+++|+..++...++++++.+++++.
T Consensus 158 ~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~ 237 (422)
T PLN02890 158 ELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVE 237 (422)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 014640 237 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 316 (421)
Q Consensus 237 ~l~~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~ 316 (421)
.+++||++|+.+..+...++++|++++++|||+||+.||++||+++|++++..+.+++||+++|+||||+||++||++++
T Consensus 238 ~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~ 317 (422)
T PLN02890 238 HLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTS 317 (422)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 99999999999887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccccccCcccHHHHHHHhhCchHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 014640 317 ASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 396 (421)
Q Consensus 317 ~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~ 396 (421)
+.+|||.|+||++||+|+|+|+|++..+++.+++.+.+.+++++++++++|.++|++++|++++++|.++|.+.|+.||+
T Consensus 318 ~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~ 397 (422)
T PLN02890 318 ASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPE 397 (422)
T ss_pred hhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988888889998888888999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 014640 397 NNDEDVTKSRRALLDLTHRVITRNK 421 (421)
Q Consensus 397 ~~~~~~~~~r~~L~~l~~~~~~R~k 421 (421)
+++++|..+|+.|..|++++++|+|
T Consensus 398 s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 398 TDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred CccccchHHHHHHHHHHHHHHhccC
Confidence 9876777789999999999999987
|
|
| >TIGR02749 prenyl_cyano solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >PLN02857 octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >CHL00151 preA prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 | Back alignment and domain information |
|---|
| >TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase | Back alignment and domain information |
|---|
| >PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 | Back alignment and domain information |
|---|
| >cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
|---|
| >PLN02632 phytoene synthase | Back alignment and domain information |
|---|
| >TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
|---|
| >TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PRK12884 ubiA prenyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PRK12882 ubiA prenyltransferase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 421 | ||||
| 3apz_A | 348 | Apo Form Of Arabidopsis MediumLONG-Chain Length Pre | 1e-148 | ||
| 3aq0_A | 348 | Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L | 1e-147 | ||
| 3mzv_A | 341 | Crystal Structure Of A Decaprenyl Diphosphate Synth | 6e-30 | ||
| 3aqb_B | 325 | M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha | 1e-26 | ||
| 3oyr_A | 345 | Crystal Structure Of Polyprenyl Synthase From Caulo | 3e-26 | ||
| 3lmd_A | 360 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-23 | ||
| 3n3d_A | 335 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-22 | ||
| 3pko_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-22 | ||
| 1vg4_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1v4i_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1v4e_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1v4h_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1wkz_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 1wl0_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-21 | ||
| 2azl_A | 299 | Crystal Structure For The Mutant F117e Of Thermotog | 2e-21 | ||
| 1vg7_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-21 | ||
| 1vg6_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-21 | ||
| 1v4j_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 3tc1_A | 315 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 5e-21 | ||
| 1vg2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-21 | ||
| 1v4k_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-21 | ||
| 1wl2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-20 | ||
| 1wl3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-20 | ||
| 1vg3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-20 | ||
| 1wy0_A | 342 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 5e-20 | ||
| 3rmg_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-19 | ||
| 1wl1_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-17 | ||
| 3ipi_A | 295 | Crystal Structure Of A Geranyltranstransferase From | 5e-15 | ||
| 3nf2_A | 352 | Crystal Structure Of Polyprenyl Synthetase From Str | 6e-14 | ||
| 3kra_A | 295 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 1e-13 | ||
| 4dhd_A | 358 | Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta | 2e-13 | ||
| 3uca_A | 324 | Crystal Structure Of Isoprenoid Synthase (Target Ef | 3e-12 | ||
| 4f62_A | 317 | Crystal Structure Of A Putative Farnesyl-Diphosphat | 4e-11 | ||
| 3npk_A | 291 | The Crystal Structure Of Geranyltranstransferase Fr | 7e-11 | ||
| 2ftz_A | 284 | Crystal Structure Of Geranyltranstransferase (Ec 2. | 7e-11 | ||
| 3p8l_A | 302 | Crystal Structure Of Polyprenyl Synthase From Enter | 2e-10 | ||
| 3lom_A | 313 | Crystal Structure Of Geranyltransferase From Legion | 4e-10 | ||
| 2j1p_A | 293 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 7e-10 | ||
| 3m9u_A | 309 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-08 | ||
| 1rqi_A | 300 | Active Conformation Of Farnesyl Pyrophosphate Synth | 2e-08 | ||
| 1rqj_A | 299 | Active Conformation Of Farnesyl Pyrophosphate Synth | 2e-08 | ||
| 2for_A | 323 | Crystal Structure Of The Shigella Flexneri Farnesyl | 2e-08 | ||
| 1rtr_A | 301 | Crystal Structure Of S. Aureus Farnesyl Pyrophospha | 2e-08 | ||
| 3p8r_A | 302 | Crystal Structure Of Polyprenyl Synthase From Vibri | 2e-08 | ||
| 3lk5_A | 380 | Crystal Structure Of Putative Geranylgeranyl Pyroph | 2e-08 | ||
| 3lvs_A | 298 | Crystal Structure Of Farnesyl Diphosphate Synthase | 8e-08 | ||
| 4fp4_A | 285 | Crystal Structure Of Isoprenoid Synthase A3mx09 (Ta | 1e-07 | ||
| 2azk_A | 289 | Crystal Structure For The Mutant W136e Of Sulfolobu | 2e-07 | ||
| 2q80_A | 301 | Crystal Structure Of Human Geranylgeranyl Pyrophosp | 3e-07 | ||
| 2azj_A | 289 | Crystal Structure For The Mutant D81c Of Sulfolobus | 2e-06 | ||
| 2j1o_A | 268 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 3e-06 | ||
| 2h8o_A | 335 | The 1.6a Crystal Structure Of The Geranyltransferas | 6e-06 | ||
| 1wmw_A | 330 | Crystal Structure Of Geranulgeranyl Diphosphate Syn | 2e-05 | ||
| 3llw_A | 311 | Crystal Structure Of Geranyltransferase From Helico | 3e-05 | ||
| 3q1o_A | 310 | Crystal Structure Of Geranyltransferase From Helico | 3e-05 | ||
| 3lji_A | 304 | Crystal Structure Of Putative Geranyltranstransfera | 7e-05 | ||
| 2dh4_A | 340 | Geranylgeranyl Pyrophosphate Synthase Length = 340 | 8e-05 | ||
| 3p41_A | 303 | Crystal Structure Of Polyprenyl Synthetase From Pse | 8e-05 | ||
| 3ts7_A | 324 | Crystal Structure Of Farnesyl Diphosphate Synthase | 3e-04 | ||
| 3m0g_A | 297 | Crystal Structure Of Putative Farnesyl Diphosphate | 8e-04 |
| >pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 | Back alignment and structure |
|
| >pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 | Back alignment and structure |
| >pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 | Back alignment and structure |
| >pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 | Back alignment and structure |
| >pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 | Back alignment and structure |
| >pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 | Back alignment and structure |
| >pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 | Back alignment and structure |
| >pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 | Back alignment and structure |
| >pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132a Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima Length = 299 | Back alignment and structure |
| >pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F52a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R44a Mutant Length = 299 | Back alignment and structure |
| >pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga Maritima Octaprenyl Pyrophosphate Synthase Length = 299 | Back alignment and structure |
| >pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123AD62A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima V73y Mutant Length = 299 | Back alignment and structure |
| >pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 | Back alignment and structure |
| >pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R91a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 | Back alignment and structure |
| >pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 | Back alignment and structure |
| >pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 | Back alignment and structure |
| >pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima H74a Mutant Length = 299 | Back alignment and structure |
| >pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 | Back alignment and structure |
| >pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 | Back alignment and structure |
| >pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 | Back alignment and structure |
| >pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 | Back alignment and structure |
| >pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 | Back alignment and structure |
| >pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 | Back alignment and structure |
| >pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 | Back alignment and structure |
| >pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 | Back alignment and structure |
| >pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 | Back alignment and structure |
| >pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 | Back alignment and structure |
| >pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 | Back alignment and structure |
| >pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 | Back alignment and structure |
| >pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 | Back alignment and structure |
| >pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 | Back alignment and structure |
| >pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 | Back alignment and structure |
| >pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 | Back alignment and structure |
| >pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 | Back alignment and structure |
| >pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 | Back alignment and structure |
| >pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 | Back alignment and structure |
| >pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target Efi-501993) From Pyrobaculum Calidifontis Length = 285 | Back alignment and structure |
| >pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Bound To Ggpp Length = 301 | Back alignment and structure |
| >pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 | Back alignment and structure |
| >pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 | Back alignment and structure |
| >pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 | Back alignment and structure |
| >pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 | Back alignment and structure |
| >pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 | Back alignment and structure |
| >pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 | Back alignment and structure |
| >pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase Length = 340 | Back alignment and structure |
| >pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 | Back alignment and structure |
| >pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 | Back alignment and structure |
| >pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 | Back alignment and structure |
|---|
Score = 456 bits (1175), Expect = e-161
Identities = 277/347 (79%), Positives = 318/347 (91%)
Query: 75 SVIEEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM 134
S++EE+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLM
Sbjct: 2 SLVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLM 61
Query: 135 ATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGS 194
ATAL+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GS
Sbjct: 62 ATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGS 121
Query: 195 LNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRC 254
LN VMGNK++VLAGDFLLSRAC ALA+LKNTEVV LLAT VEHLVTGETM++T+S++QR
Sbjct: 122 LNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRY 181
Query: 255 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 314
SMDYYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTG
Sbjct: 182 SMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTG 241
Query: 315 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 374
TSASLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ
Sbjct: 242 TSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQ 301
Query: 375 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 421
+ RELA++HANLAAAAI SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 302 RARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| 3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl sy | 100.0 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 100.0 | |
| 3apz_A | 348 | Geranyl diphosphate synthase; prenyltransferase, a | 100.0 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 100.0 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 100.0 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 100.0 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 100.0 | |
| 4dhd_A | 358 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 100.0 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 100.0 | |
| 3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural | 100.0 | |
| 3tc1_A | 315 | Octaprenyl pyrophosphate synthase; all alpha-helic | 100.0 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 100.0 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 100.0 | |
| 3uca_A | 324 | Geranyltranstransferase; isoprenoid synthesis, iso | 100.0 | |
| 1yhl_A | 362 | Farnesyl pyrophosphate synthase; farnesyl diphosph | 100.0 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 100.0 | |
| 3ts7_A | 324 | Geranyltranstransferase; isoprenoid synthesis, far | 100.0 | |
| 2qis_A | 374 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 100.0 | |
| 1rtr_A | 301 | Geranyltranstransferase; 2.50A {Staphylococcus aur | 100.0 | |
| 2h8o_A | 335 | Geranyltranstransferase; geranyltransferase,agroba | 100.0 | |
| 1rqj_A | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 100.0 | |
| 3lsn_A | 304 | Geranyltranstransferase; structural genomics, prot | 100.0 | |
| 3p8l_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 3p8r_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, i | 100.0 | |
| 3dyh_A | 390 | Farnesyl pyrophosphate synthase; protein-bisphosph | 100.0 | |
| 2ihi_A | 395 | Pyrophosphate synthase; PV092040, structural genom | 100.0 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 100.0 | |
| 3lom_A | 313 | Geranyltranstransferase; geranyltransferase, struc | 100.0 | |
| 3mav_A | 395 | Farnesyl pyrophosphate synthase; PV092040, structu | 100.0 | |
| 3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphospha | 100.0 | |
| 3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 100.0 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 100.0 | |
| 2her_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3llw_A | 311 | Geranyltranstransferase (ISPA); structural genomic | 100.0 | |
| 2j1p_A | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 100.0 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 100.0 | |
| 3npk_A | 291 | Geranyltranstransferase; isoprene biosynthesis, SG | 100.0 | |
| 2q58_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 3kra_B | 274 | Geranyl diphosphate synthase small subunit; prenyl | 100.0 | |
| 3qkc_B | 273 | Geranyl diphosphate synthase small subunit; struct | 100.0 | |
| 4hd1_A | 294 | Squalene synthase HPNC; MCSG, structural genomics, | 96.67 | |
| 3acx_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 95.13 | |
| 3vj8_A | 343 | Squalene synthase; farnesyl-diphosphate farnesyltr | 94.54 |
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-72 Score=564.45 Aligned_cols=316 Identities=31% Similarity=0.434 Sum_probs=267.2
Q ss_pred hcCchHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhH
Q 014640 80 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 159 (421)
Q Consensus 80 ~~d~~~~i~~el~~v~~~l~~~~~~~~p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
..+....+.++++.|+..|++.+.+.+|.+.++++|++..| |||+||+|++++++++|++.+
T Consensus 24 ~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~---------------- 85 (345)
T 3oyr_A 24 VDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND---------------- 85 (345)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH----------------
Confidence 45567889999999999999999999999999999999988 999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014640 160 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 239 (421)
Q Consensus 160 ~~~~~lA~avEliH~AsLIHDDIiD~s~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~ 239 (421)
.++.+|+++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||..+++..++++++.+++++..++
T Consensus 86 -~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 164 (345)
T 3oyr_A 86 -HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIA 164 (345)
T ss_dssp -THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHhhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 014640 240 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 319 (421)
Q Consensus 240 ~Gq~~dl~~~~~~~~s~~~Yl~~i~~KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~ 319 (421)
+||++|+.+..+...++++|++++.+|||+||++||++|++++|++++..+.+++||+++|+||||+||++||+++++.+
T Consensus 165 ~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~ 244 (345)
T 3oyr_A 165 EGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETL 244 (345)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhc
Confidence 99999999987778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCcccHHHHHHHhhC-chHHHHHHc----ccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 014640 320 GKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQ----GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 394 (421)
Q Consensus 320 GK~~g~Dl~~Gk~TlPvl~Ale~~-~~l~~~l~~----~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 394 (421)
|||.|+||++||+|+|++++++.. ++.++.+.+ ...++++++++++++.++|++++|++++++|.++|++.|+.|
T Consensus 245 GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~l 324 (345)
T 3oyr_A 245 GKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMF 324 (345)
T ss_dssp ------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 444444433 334567899999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhcc
Q 014640 395 PENNDEDVTKSRRALLDLTHRVITRN 420 (421)
Q Consensus 395 p~~~~~~~~~~r~~L~~l~~~~~~R~ 420 (421)
|+++ +|+.|.+|++++++|+
T Consensus 325 p~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 325 PAND------WREALEELADFAVSRR 344 (345)
T ss_dssp CSSH------HHHHHHHHHHHHHHC-
T ss_pred CCcH------HHHHHHHHHHHHHhcc
Confidence 9998 9999999999999996
|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} | Back alignment and structure |
|---|
| >4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... | Back alignment and structure |
|---|
| >3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 421 | ||||
| d2q80a1 | 291 | a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s | 6e-30 | |
| d1fpsa_ | 348 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 8e-25 | |
| d1v4ea_ | 280 | a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th | 3e-24 | |
| d1rqja_ | 299 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 4e-24 | |
| d1rtra_ | 290 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 3e-17 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (287), Expect = 6e-30
Identities = 60/312 (19%), Positives = 110/312 (35%), Gaps = 33/312 (10%)
Query: 109 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 168
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 169 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 228
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 229 TLLATV-VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 287
L +E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 288 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 344
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 345 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 404
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 405 SRRALLDLTHRV 416
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 421 | |||
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 100.0 | |
| d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga mariti | 100.0 | |
| d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1rtra_ | 290 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 96 | 96.45 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-63 Score=487.44 Aligned_cols=279 Identities=22% Similarity=0.279 Sum_probs=250.0
Q ss_pred hHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014640 107 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 186 (421)
Q Consensus 107 p~l~~~~~y~~~~g~~GKr~Rp~Lvll~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLIHDDIiD~s 186 (421)
..|.++.+|.+..| |||+||.|+++++++++++. +.+..+|+++||||+||||||||||++
T Consensus 5 ~~l~e~~~y~~~~g--GKr~Rp~l~~~~~~~~~~~~-----------------~~~~~~a~aiEllH~asLihDDi~D~~ 65 (291)
T d2q80a1 5 RILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASLLIDDIEDNS 65 (291)
T ss_dssp HHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC--CchHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 35678899999988 99999999999999998752 367899999999999999999999999
Q ss_pred CCCCCCCcchhccChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccccCCC-CCCHHHHHHHHhh
Q 014640 187 DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYY 265 (421)
Q Consensus 187 ~~RRG~pt~~~~~G~~~Avl~GD~Lla~A~~~la~~~~~~v~~~ls~~~~~l~~Gq~~dl~~~~~~-~~s~~~Yl~~i~~ 265 (421)
++|||+||+|.+||++.|||+||||++.|+..+++..++.++..+++++..+++||.+|+.+..+. ..++++|++++.+
T Consensus 66 ~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~ 145 (291)
T d2q80a1 66 KLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQ 145 (291)
T ss_dssp SEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ccccCCCccccccchhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhHhccccccccccccccCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998775443 4589999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhccccccccccccCCCcccccccCcccHHHHHHHhhCc-
Q 014640 266 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP- 344 (421)
Q Consensus 266 KTasL~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~AfQI~DDllD~~~~~~~~GK~~g~Dl~~Gk~TlPvl~Ale~~~- 344 (421)
|||+||++||.+|++++|.+++ +++||+++|+||||+||++||+++++.+|||.|+||++||+|||+++|++..+
T Consensus 146 KT~~Lf~~~~~~ga~~~~~~~~----l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~ 221 (291)
T d2q80a1 146 KTGGLFGLAVGLMQLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPE 221 (291)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTT
T ss_pred ccchhhHhhhhhhhhhcccchh----hHHHHHHHHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHHHhccc
Confidence 9999999999999999998754 78899999999999999999999999999999999999999999999998754
Q ss_pred --hHHHHHHcccCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 014640 345 --QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 414 (421)
Q Consensus 345 --~l~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~r~~L~~l~~ 414 (421)
++.+++.....+++.++.+++++.++|++++|++++++|.++|.+.|+.||+++ .++.|.+...
T Consensus 222 ~~~l~~il~~~~~~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~------~~~~L~~~L~ 287 (291)
T d2q80a1 222 STQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP------ELVALVKHLS 287 (291)
T ss_dssp CCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH------HHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHHHH
Confidence 467778777778889999999999999999999999999999999999999988 6766655443
|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|