Citrus Sinensis ID: 014642

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MAKVVVGMAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHcccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHcHHccccccEEEEEEccccccccccHHHHHHHccEEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccEEEEccccccccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHccccccccccccccHHHHHccccccccEEEEcccccEEEEEccccHHHHHHHHHHccccccEEEEccccHHHHHHHcHHHHHHHHHHHHcccEEEEEEEcHHHHHccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHcccEEEEEEEccHHHccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEccccccccEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccEEcccccEccccccccccHEEEEccccccEcccccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEccccccccHcccccccccHHHEEEEEEc
Coil and Loop (DISEMBL)
MAKVVVGMAakgeqkkemsfteKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSqkfgsasnicassLDSYETVVKKFKEARSNLDTLKKLGASiihgvdatemkehSELSKRKFDRIifnfphagfhgkeedDEVIRMHMSLVEGFFrnasgmlrprgevhvshkttapFCKWHIEELARKHSLLRLDCVqfrkedypgysnkkgagslcddyfplgkcstfkfglyrarkgskvmsdggfIVKRTKAvqeipiqvqkretdpfdwrctnaksatdmNEFRACvkfdgsgagypvreyprfdslvhpqtsftrnaidhpgykrlalmgnsrfhngcfnsshttlgravddvgylvpeslipyERYYAEVAGFqresgrsydktvprgrtlypvdgrcyqetmkpaqpswmrlgfiyql
Flexible Loop (DISEMBL)
makvvvgmaakgeqkkemsftekDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKrtkavqeipiqvqkretdpfdwRCTNAksatdmneFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGfqresgrsydktvprgrtlypvdgrcyqetmkpaqpswmrlgfiyql
Low Complexity Region (SEG)
MAKVVVGMAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Disordered region (IsUnstruct)
******************************WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDA***********RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIY**
Disordered Region (DISOPRED)
************************************SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKG********FPLGKCSTFKFGL*********************************************KSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAG**********KTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Disordered Region (DISEMBL)
MAKVVVGMAAK****************EEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Disordered Region (DISPRO)
***************************EEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKVVVGMAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYERYYAEVAGFQRESGRSYDKTVPRGRTLYPVDGRCYQETMKPAQPSWMRLGFIYQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
P0C8L4	209	Uncharacterized protein A	no	no	0.472	0.952	0.495	1e-49
O94480	282	UPF0617 protein C1919.13c	yes	no	0.444	0.663	0.291	3e-21
Q9BRP7	624	Ferredoxin-fold anticodon	yes	no	0.285	0.192	0.338	1e-12
Q3UY23	622	Ferredoxin-fold anticodon	yes	no	0.372	0.252	0.285	3e-11
P40493	336	UPF0617 protein YIL096C O	yes	no	0.415	0.520	0.235	3e-09

>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 129/202 (63%), Gaps = 3/202 (1%)

Query: 29  EKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD 88
           EKWI HYSS H+ILLVGEG+FSFS  L+  FGSA NI A+SLDS + +  K+ +A  N++
Sbjct: 5   EKWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNIN 64

Query: 89  TLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAG--FHGKEEDDEVIRMHMSLV 146
            LK+ G  I H VD   M   + LS +++DRI+FNFPHAG  F G+E     I  H  LV
Sbjct: 65  ILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELV 124

Query: 147 EGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNK 206
            GF  NA  ML   GE+H++HKTT PF  W I++L +   L  L   +F    YPGY  K
Sbjct: 125 RGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITK 184

Query: 207 KGAGS-LCDDYFPLGKCSTFKF 227
           +G+G    DDYFP+G+CST+ F
Sbjct: 185 RGSGGRRSDDYFPVGECSTYMF 206

Arabidopsis thaliana (taxid: 3702)

>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.13c PE=3 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 107/189 (56%), Gaps = 2/189 (1%)

Query: 23  KDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALS-QKFGSASNICASSLDSYETVVKKFK 81
           K++   E++++ +   ++ LL+GEG+FSF+F+L      S   + A+S DS E + +K+ 
Sbjct: 42  KNKGPTERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYP 101

Query: 82  EARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRM 141
           +A   +  ++  G  ++H +DAT++  H +L  +KFD I +NFPH+G  G ++ D  I  
Sbjct: 102 DAAEYISKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSG-KGIKDQDRNILD 160

Query: 142 HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYP 201
           +  ++  FF+ +  +L  +G + ++   T P+  W+++ LA+      L   +F    YP
Sbjct: 161 NQKMLLAFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYP 220

Query: 202 GYSNKKGAG 210
            YS+++  G
Sbjct: 221 EYSHRRTIG 229

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 7/127 (5%)

Query: 40  QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH 99
           ++LLVGEG+FSF+ ALS+    ++ + A+ L     + +    A  NL  L++ G  +  
Sbjct: 5   RLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAELARD-PLAWENLQCLRERGIDVRF 63

Query: 100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP 159
           GVD T++ +  EL +R+FD+I F FPH G          +  +  L+  FF++ + +L  
Sbjct: 64  GVDCTQLADVFELHEREFDQIYFIFPHCGRKAG------VAKNRELLAKFFQSCADVLAE 117

Query: 160 RGEVHVS 166
            GEVHV+
Sbjct: 118 EGEVHVA 124

Homo sapiens (taxid: 9606)

>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 40  QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH 99
           ++LLVGEG+FSF+ +L      + ++ A+    +   ++    A  NL  L++ G  +  
Sbjct: 5   RLLLVGEGNFSFAASLIDGLDPSVSVTATGFQ-HRAALEGDPVALENLKRLRERGVEVRF 63

Query: 100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP 159
           GVD T++        R FDRI FNFPH G          +  +  L+  FF++ + +L  
Sbjct: 64  GVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG------VAKNRELLAKFFQSCADVLAK 117

Query: 160 RGEVHVS-------HKTTAPFCKWH----IEELARKHSLLRLDCVQFRKEDYPGY 203
            GEVHV+            P  +WH    +  +A     +  D   F  E  PGY
Sbjct: 118 AGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY 172

Mus musculus (taxid: 10090)

>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL096C PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 54/229 (23%)

Query: 32  IMHYSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDS--YETVVKKFKEARSNLD 88
           +M +     ++L GEGDFSF+ ++  Q +  + N+  +S D+   E  +K       N  
Sbjct: 65  VMPFEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPHTFEENYQ 124

Query: 89  TLKKLGASIIHGVDATEMKEHSELSK------------------RKFDRIIFNFPHAGFH 130
            LK L   I   +D T++ +  ++SK                  +    I+FNFPH G  
Sbjct: 125 YLKDLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNG-K 183

Query: 131 GKEEDDEVIRMHMSLVEGFFRNASGMLR-----------------------PR------- 160
           G ++ +  IR H  L+  FF+N+  +                         P+       
Sbjct: 184 GIKDQERNIREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAE 243

Query: 161 --GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKK 207
             G + +S     P+  W I+ LA+K+ L      +F+ E++PGY +++
Sbjct: 244 GYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRR 292

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
359494364	364	PREDICTED: uncharacterized protein At4g2	0.767	0.887	0.481	2e-81
224074444	413	predicted protein [Populus trichocarpa]	0.586	0.598	0.583	6e-80
359494357	355	PREDICTED: uncharacterized protein At4g2	0.745	0.884	0.468	7e-78
296090026	516	unnamed protein product [Vitis vinifera]	0.786	0.641	0.441	2e-76
356569597	576	PREDICTED: uncharacterized protein LOC10	0.610	0.446	0.526	1e-75
357460297	467	hypothetical protein MTR_3g061070 [Medic	0.477	0.430	0.636	3e-74
224122324	243	predicted protein [Populus trichocarpa]	0.574	0.995	0.555	3e-73
297853298	480	hypothetical protein ARALYDRAFT_892585 [	0.543	0.477	0.593	8e-73
334183353	515	uncharacterized protein [Arabidopsis tha	0.520	0.425	0.604	6e-71
296090024	383	unnamed protein product [Vitis vinifera]	0.522	0.574	0.563	7e-71

>gi|359494364|ref|XP_002263396.2| PREDICTED: uncharacterized protein At4g26485 [Vitis vinifera]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/361 (48%), Positives = 223/361 (61%), Gaps = 38/361 (10%)

Query: 16  KEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYET 75
           +EM   E   +E+EK +MHYSS HQILLVGEGDFSFS  L+  F SASNI ASSLD Y+ 
Sbjct: 5   EEMVKDEVGVEEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVASSLDPYDV 64

Query: 76  VVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEED 135
           ++K +K+A+SNL+ L+KLGAS++ GVDAT+MK H++L  RKFDRII+NFPHAGFHGKE++
Sbjct: 65  LIKMYKKAKSNLEALEKLGASLLFGVDATKMKLHTDLKMRKFDRIIYNFPHAGFHGKEDN 124

Query: 136 DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF 195
             +I MH  LV GFFRNASGMLR  GE+HV+HKTTAPF  W++EELA ++SL+  +CV F
Sbjct: 125 RLMINMHRDLVHGFFRNASGMLRANGEIHVNHKTTAPFSHWNLEELASQNSLVLFECVDF 184

Query: 196 RKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLY-RARKGSKVMSDGGFIVKRTKAVQE 254
           +KEDYPGY+NK+GAGS CD+ F LG CSTFKF     A K S+++          +  Q+
Sbjct: 185 KKEDYPGYNNKRGAGSRCDEPFRLGACSTFKFRFSPTAMKMSRIVCHSDL---NHRGSQQ 241

Query: 255 IPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSF 314
           I +   ++     D+R        +MN                    PR   L  P T  
Sbjct: 242 INLMQMQQWPGSSDYRGPGRNILANMNGI------------------PRHMGL--PLTIS 281

Query: 315 TRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESL-IPYERYYAEVA 373
             N               SR  +G FN +  T GR   DVGY V E+L + +ERY AE  
Sbjct: 282 VSNEC-------------SRIFDGYFNHAVETFGRTGYDVGYTVHEALRLGFERYMAEGP 328

Query: 374 G 374
           G
Sbjct: 329 G 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074444|ref|XP_002304372.1| predicted protein [Populus trichocarpa] gi|222841804|gb|EEE79351.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 147/252 (58%), Positives = 191/252 (75%), Gaps = 5/252 (1%)

Query: 8   MAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICA 67
           MA K  +K+ M      E+++EKW+ HYSS HQILLVG+GDFSFS +L+  FGS SNI A
Sbjct: 1   MADKEAEKQVMI-----EEDKEKWLKHYSSNHQILLVGDGDFSFSLSLALSFGSGSNIVA 55

Query: 68  SSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHA 127
           SSLD+ + ++KK+K+A+SNL+ L KL AS +HGVDAT+MK H +L  RKFDRIIFNFPHA
Sbjct: 56  SSLDTSDVLIKKYKKAKSNLENLAKLKASTLHGVDATKMKLHPDLRMRKFDRIIFNFPHA 115

Query: 128 GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSL 187
           GFHGKE++ ++I  H +LV GFFRNA  MLR  GE+HV+HKTTAPFC W+IEELAR++SL
Sbjct: 116 GFHGKEDNIKLIEKHRNLVRGFFRNAKSMLRADGEIHVNHKTTAPFCHWNIEELARRNSL 175

Query: 188 LRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVK 247
           + ++ V+F+ EDYPGY+NK+G  + CD+ FPLG+CSTFKF    A K SK  S  GF  K
Sbjct: 176 VLIERVEFKIEDYPGYNNKRGDSNRCDEPFPLGECSTFKFRFSHAAKMSKATSHLGFAGK 235

Query: 248 RTKAVQEIPIQV 259
           R   + + PI++
Sbjct: 236 RCPQLHDNPIKM 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494357|ref|XP_003634764.1| PREDICTED: uncharacterized protein At4g26485-like [Vitis vinifera] gi|296090018|emb|CBI39837.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 218/361 (60%), Gaps = 47/361 (13%)

Query: 16  KEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYET 75
           +EM   E   +E+EK +MHYSS HQILLVGEGDFSFS  L+  F SASNI ASSLD Y+ 
Sbjct: 5   EEMVKDEVGVEEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVASSLDPYDV 64

Query: 76  VVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEED 135
           ++K +K+A+SNL+ L+KLGAS++ GVDAT+MK H++L   KFDRII+NFPHAGFHGKE++
Sbjct: 65  LIKMYKKAKSNLEALEKLGASLLFGVDATKMKLHTDLKMWKFDRIIYNFPHAGFHGKEDN 124

Query: 136 DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF 195
             +I MH  LV GFFRNASGMLR  GE+HV+HKTTAPF  W++EELA ++SL+  +CV F
Sbjct: 125 RLMINMHRDLVHGFFRNASGMLRANGEIHVNHKTTAPFSHWNLEELASQNSLVLFECVDF 184

Query: 196 RKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYR-ARKGSKVMSDGGFIVKRTKAVQE 254
           +KEDYPGY+NK+GAGS CD+ F LG C TFKF     A K S+++          +  Q+
Sbjct: 185 KKEDYPGYNNKRGAGSRCDEPFRLGACGTFKFRFSPIAMKMSRIVCHSDL---NHRGSQQ 241

Query: 255 IPIQVQKRETDPFDWRCTNAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSF 314
           I +   ++     D+R        +MN                    PR   L  P T F
Sbjct: 242 INLMQMQQWPGSSDYRGPGRNILANMNGI------------------PRHMGL--PLTIF 281

Query: 315 TRNAIDHPGYKRLALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESL-IPYERYYAEVA 373
                                 +G FN +  T GR   DVGY V E+  + +ERY AE  
Sbjct: 282 ----------------------DGYFNHAVETFGRNGYDVGYTVHEAFRLGFERYMAEGP 319

Query: 374 G 374
           G
Sbjct: 320 G 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090026|emb|CBI39845.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/396 (44%), Positives = 224/396 (56%), Gaps = 65/396 (16%)

Query: 8   MAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICA 67
           M +      EM   E   +E+EK +MHYSS HQILLVGEGDFSFS  L+  F SASNI A
Sbjct: 122 MISVTPMAHEMVKDEVGVEEQEKRLMHYSSFHQILLVGEGDFSFSLCLAHSFASASNIVA 181

Query: 68  SSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHA 127
           SSLD Y+ ++K +K+A+SNL+ L+KLGAS++ GVDAT+MK H++L  RKFDRII+NFPHA
Sbjct: 182 SSLDPYDVLIKMYKKAKSNLEALEKLGASLLFGVDATKMKLHTDLKMRKFDRIIYNFPHA 241

Query: 128 GFHGKEEDDEVIR---------------------------MHMSLVEGFFRNASGMLRPR 160
           GFHGKE++  +I                            MH  LV GFFRNASGMLR  
Sbjct: 242 GFHGKEDNRLMINLNFTAKSSIHCSCSSWSMLLFSYVLFVMHRDLVHGFFRNASGMLRAN 301

Query: 161 GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLG 220
           GE+HV+HKTTAPF  W++EELA ++SL+  +CV F+KEDYPGY+NK+GAGS CD+ F LG
Sbjct: 302 GEIHVNHKTTAPFSHWNLEELASQNSLVLFECVDFKKEDYPGYNNKRGAGSRCDEPFRLG 361

Query: 221 KCSTFKFGLY-RARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETDPFDWRCTNAKSATD 279
            CSTFKF     A K S+++          +  Q+I +   ++     D+R        +
Sbjct: 362 ACSTFKFRFSPTAMKMSRIVCHSDL---NHRGSQQINLMQMQQWPGSSDYRGPGRNILAN 418

Query: 280 MNEFRACVKFDGSGAGYPVREYPRFDSLVHPQTSFTRNAIDHPGYKRLALMGNSRFHNGC 339
           MN                    PR   L  P T    N               SR  +G 
Sbjct: 419 MNGI------------------PRHMGL--PLTISVSNEC-------------SRIFDGY 445

Query: 340 FNSSHTTLGRAVDDVGYLVPESL-IPYERYYAEVAG 374
           FN +  T GR   DVGY V E+L + +ERY AE  G
Sbjct: 446 FNHAVETFGRTGYDVGYTVHEALRLGFERYMAEGPG 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569597|ref|XP_003552985.1| PREDICTED: uncharacterized protein LOC100802899 [Glycine max]

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/260 (52%), Positives = 188/260 (72%), Gaps = 3/260 (1%)

Query: 8   MAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICA 67
           M  + ++ +  +  +++ ++  KW+ HYSS HQILLVGEGDFSFS +L++ FGSASN+ A
Sbjct: 1   MEEETKKNQYHTIQQQEREDNAKWVTHYSSYHQILLVGEGDFSFSLSLAKSFGSASNMVA 60

Query: 68  SSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHA 127
           SSL+SY+ V+K +K A+SNLD L KLGA ++HGVDAT+MK HS+L  R+FD++IFNFPHA
Sbjct: 61  SSLNSYDDVIKMYKNAKSNLDDLHKLGACLLHGVDATKMKLHSDLKMRRFDQVIFNFPHA 120

Query: 128 GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSL 187
           GFHGKE++  +I+ H +LV GFF+NASGMLR  GE+HVSHKTTAPF  W+IE+LA +  L
Sbjct: 121 GFHGKEDNTLLIKKHKALVLGFFKNASGMLRANGEIHVSHKTTAPFNNWNIEKLAAQCFL 180

Query: 188 LRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVK 247
             ++C  F++EDYPGY+NK+G    CD+ FPLGKC TFKF      K    +     +V 
Sbjct: 181 KLIECADFKREDYPGYNNKRGDSYRCDEPFPLGKCCTFKFIYNPKAKRQNHVKRNQMVVS 240

Query: 248 RTKA---VQEIPIQVQKRET 264
           R +    +QEI + V++  T
Sbjct: 241 RQQTCLPLQEIEVAVEQLPT 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460297|ref|XP_003600430.1| hypothetical protein MTR_3g061070 [Medicago truncatula] gi|355489478|gb|AES70681.1| hypothetical protein MTR_3g061070 [Medicago truncatula]

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 162/201 (80%)

Query: 27  EEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN 86
           +E KW+ HY S HQILLVG+GDFSFS +L++ FGSASNI ASSLD+Y+ V+KK+K A+SN
Sbjct: 32  DEPKWVTHYCSDHQILLVGDGDFSFSLSLAKAFGSASNIVASSLDTYDEVIKKYKNAKSN 91

Query: 87  LDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV 146
           ++ L+KLGA ++HGVDAT MK H +L  R+FDR+IFNFPHAGFH KE++  +I+MHM LV
Sbjct: 92  VEELQKLGAYVLHGVDATAMKFHPDLKMRRFDRVIFNFPHAGFHRKEDNLMMIKMHMDLV 151

Query: 147 EGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNK 206
            GFF+NA  MLR  GE+HV+HKTT PF  W+IE+LA++  L  +DC+ F KEDYPGY+NK
Sbjct: 152 FGFFKNACHMLRANGEIHVNHKTTPPFIDWNIEKLAKQCFLTMIDCIDFNKEDYPGYNNK 211

Query: 207 KGAGSLCDDYFPLGKCSTFKF 227
           +G    CDD FPLGKCSTFKF
Sbjct: 212 RGDSYRCDDPFPLGKCSTFKF 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122324|ref|XP_002330595.1| predicted protein [Populus trichocarpa] gi|222872153|gb|EEF09284.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/243 (55%), Positives = 186/243 (76%), Gaps = 1/243 (0%)

Query: 27  EEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN 86
           ++EKW+ HYSSKHQILLVGEGDFSFS+ L++ FGS S I ASSLDSY+ V++K+K+A+SN
Sbjct: 1   DKEKWVKHYSSKHQILLVGEGDFSFSWCLARSFGSGSKIVASSLDSYDAVIQKYKKAKSN 60

Query: 87  LDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV 146
           L++LK+LGAS ++GVDAT+MK H  L  +KFDRIIFNFPHAGF+ KE+++ +I MH  LV
Sbjct: 61  LESLKELGASTLYGVDATKMKHHLPLRMQKFDRIIFNFPHAGFYLKEDNNLMIEMHKELV 120

Query: 147 EGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNK 206
             FF NA+ ML+  GE+HV+HKT++PFC W+I ELAR++SL  +    F+ EDYPGYSNK
Sbjct: 121 GNFFGNANDMLQAYGEIHVTHKTSSPFCHWNILELARRNSLEFIGRDDFKMEDYPGYSNK 180

Query: 207 KGAGSLCDDYFPLGKCSTFKF-GLYRARKGSKVMSDGGFIVKRTKAVQEIPIQVQKRETD 265
           +G G  CD  FPLG+CSTFKF   +  ++   V+++    +KR++ +Q  P+++ KR+  
Sbjct: 181 RGEGDRCDQPFPLGECSTFKFRSSHTDKQIYGVINNSDSALKRSRQIQGNPMEIWKRQKI 240

Query: 266 PFD 268
            FD
Sbjct: 241 TFD 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853298|ref|XP_002894530.1| hypothetical protein ARALYDRAFT_892585 [Arabidopsis lyrata subsp. lyrata] gi|297340372|gb|EFH70789.1| hypothetical protein ARALYDRAFT_892585 [Arabidopsis lyrata subsp. lyrata]

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 167/229 (72%)

Query: 6   VGMAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNI 65
           +   A  E  K  S    +++EEE W+ HYSS HQILLVGEGDFSFS +L+  FGSASNI
Sbjct: 15  IAPMAMREFSKLTSRARDNDEEEEVWVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNI 74

Query: 66  CASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFP 125
           CASSLDSY+ VV+K+K+ARSN++TLK+LGA ++HGVDAT +  H +L  R+FDR+IFNFP
Sbjct: 75  CASSLDSYDVVVRKYKKARSNIETLKRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFP 134

Query: 126 HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH 185
           HAGFHG+E D  +IR H  LV GFF  AS +LR  GEVHVSHK  APFC W++EELA + 
Sbjct: 135 HAGFHGRESDSSLIRKHRELVFGFFNGASRLLRADGEVHVSHKNKAPFCNWNLEELASRC 194

Query: 186 SLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARK 234
            L+ +  V F K +YPGY NK+G GS CD  F LG+CSTFKF   R  K
Sbjct: 195 FLVLIQRVAFEKSNYPGYENKRGDGSRCDKPFLLGECSTFKFRFSRVAK 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183353|ref|NP_564700.2| uncharacterized protein [Arabidopsis thaliana] gi|332195175|gb|AEE33296.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 164/220 (74%), Gaps = 1/220 (0%)

Query: 16  KEMSFTEKD-EKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYE 74
           +E+S   +D + +EE W+ HYSS HQILLVGEGDFSFS +L+  FGSASNICASSLDSY+
Sbjct: 4   RELSQLNRDSDGDEEVWVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNICASSLDSYD 63

Query: 75  TVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEE 134
            VV+K+K+ARSNL TLK+LGA ++HGVDAT +  H +L  R+FDR+IFNFPHAGFHG+E 
Sbjct: 64  VVVRKYKKARSNLKTLKRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFPHAGFHGRES 123

Query: 135 DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ 194
           D  +IR H  LV GFF  AS +LR  GEVHVSHK  APF +W++EELA +  L+ +  V 
Sbjct: 124 DSSLIRKHRELVFGFFNGASRLLRANGEVHVSHKNKAPFSEWNLEELASRCFLVLIQRVA 183

Query: 195 FRKEDYPGYSNKKGAGSLCDDYFPLGKCSTFKFGLYRARK 234
           F K +YPGY NK+G G  CD  F LG+CSTFKF   R  K
Sbjct: 184 FEKNNYPGYENKRGDGRRCDQPFLLGECSTFKFRFSRVAK 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090024|emb|CBI39843.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 171/245 (69%), Gaps = 25/245 (10%)

Query: 8   MAAKGEQKKEMSFTEKDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICA 67
           +A+     +EM   E   +E+EK +MHYSS HQILLVGEGDFSFS  L   F SASNI A
Sbjct: 122 IASSMAVGEEMVKDEVGVEEQEKRLMHYSSFHQILLVGEGDFSFSLCLGHSFASASNIVA 181

Query: 68  SSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHA 127
           SSLD Y  ++K +K+A+SNL+ L+KLGAS++ GVDAT+MK H  L  RKFDRII+NFPHA
Sbjct: 182 SSLDPYVVLIKMYKKAKSNLEALEKLGASLLFGVDATKMKLHIGLKMRKFDRIIYNFPHA 241

Query: 128 GFHGKEEDDEVIR-------------------------MHMSLVEGFFRNASGMLRPRGE 162
            FHGKE++  +I+                         MH  LV GFFRNASGMLR  GE
Sbjct: 242 SFHGKEDNRLMIKKRIVVMDMICSLNFIVQSSIHCSCSMHRDLVHGFFRNASGMLRANGE 301

Query: 163 VHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPLGKC 222
           +HV+HKTTAPF  W++EELA ++SL+  +CV F+KEDYPGY+NK+GAGS CD+ F LG C
Sbjct: 302 IHVNHKTTAPFSHWNLEELASQNSLVLFECVDFKKEDYPGYNNKRGAGSRCDEPFRLGAC 361

Query: 223 STFKF 227
           STFKF
Sbjct: 362 STFKF 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2161745	220	AT5G56060 [Arabidopsis thalian	0.467	0.895	0.450	1.4e-41
TAIR|locus:2012115	314	AT1G55800 "AT1G55800" [Arabido	0.235	0.315	0.485	5.4e-39
TAIR|locus:504954949	256	AT5G56075 [Arabidopsis thalian	0.439	0.722	0.414	5.7e-36
TAIR|locus:2179265	193	AT5G25030 [Arabidopsis thalian	0.444	0.968	0.371	9.8e-32
POMBASE|SPCC1919.13c	282	SPCC1919.13c "ribosome biogene	0.444	0.663	0.291	3e-23
UNIPROTKB|G4MUS2	346	MGG_11170 "Uncharacterized pro	0.213	0.260	0.378	1.3e-15
ZFIN|ZDB-GENE-030131-8403	582	si:dkey-71l1.3 "si:dkey-71l1.3	0.382	0.276	0.324	6.4e-14
UNIPROTKB|J9PAV7	809	ALG9 "Uncharacterized protein"	0.372	0.194	0.331	1.2e-12
CGD|CAL0004722	353	orf19.7366 [Candida albicans (	0.249	0.297	0.314	1.9e-11
UNIPROTKB|Q5A4G8	353	CaO19.7366 "Putative uncharact	0.249	0.297	0.314	1.9e-11

TAIR|locus:2161745 AT5G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 91/202 (45%), Positives = 130/202 (64%)

Query:    32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK 91
             +  YS+K +ILLVGEGDFSFS +L++ FGSA+NI A+SLD+ E +  K+ + ++N++ L+
Sbjct:     9 LQQYSNKQKILLVGEGDFSFSLSLARVFGSATNITATSLDTREELGIKYTDGKANVEGLE 68

Query:    92 KLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGF-HGKEEDDEVIRMHMSLVEGFF 150
               G +++HGV+   M     L +  +DRIIFNFPH+G   G E D   I +H  LV GF 
Sbjct:    69 LFGCTVVHGVNVHSMSSDYRLGR--YDRIIFNFPHSGLGFGSEHDIFFIMLHQGLVRGFL 126

Query:   151 RNASGMLRPR-GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKGA 209
              +A  ML+   GE+HV+HKTT PF +W IE LA +  L  +  ++F K  +PGYSNKKG 
Sbjct:   127 ESARKMLKDEDGEIHVTHKTTDPFNRWGIETLAGEKGLRLIGEIEFHKWAFPGYSNKKGG 186

Query:   210 GSLCDDYFPLGKC-STFKFGLY 230
             GS C+  F L +  S   + +Y
Sbjct:   187 GSNCNSTFLLRRILSLLDYHVY 208

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

TAIR|locus:2012115 AT1G55800 "AT1G55800" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.4e-39, Sum P(2) = 5.4e-39
 Identities = 50/103 (48%), Positives = 67/103 (65%)

Query:    74 ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKE 133
             + VV+K+K ARSNL+TLK+LGA ++HGVDAT +  H +L  R+FDR+IFNFPH GFH KE
Sbjct:    88 DDVVRKYKNARSNLETLKRLGAFLLHGVDATTLHFHPDLRYRRFDRVIFNFPHTGFHRKE 147

Query:   134 EDDEVIRMHMSLVEGFFRN----ASGMLRPRGEVHVSHKTTAP 172
              D   I+   + +   F++    AS MLR  GE+    K   P
Sbjct:   148 SDPCQIQPAAATLRNLFKDFLHGASHMLRADGELEAFEKRNYP 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504954949 AT5G56075 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 85/205 (41%), Positives = 125/205 (60%)

Query:    27 EEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN 86
             +E K + HY++K +ILLVGEGDFSFS +L++ FGSASN+ A+SLD+   + +KFK  ++N
Sbjct:    62 QETKRLRHYTNKQKILLVGEGDFSFSLSLARAFGSASNLTATSLDTQGELEQKFKNGKAN 121

Query:    87 LDTLKKLGASIIHGVDATEM-KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSL 145
             ++ L++LG S+++GV+   M  + S      +DR+IFNFP                H  L
Sbjct:   122 VEELERLGCSVVYGVNVHSMITKPSVGGSAIYDRVIFNFP---------------TH-EL 165

Query:   146 VEGFFRNASGMLRPR---GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPG 202
             V GF ++A  +++     GE+HV HKT  PF +W ++ L  K  L  +  V+F    YPG
Sbjct:   166 VRGFMKSARVLVKDEDKGGEIHVIHKTEYPFSEWKLKTLGEKEGLDLIREVEFCLSHYPG 225

Query:   203 YSNKKGAGSLCDDYFPLGKCSTFKF 227
             Y NK+G+G   D  FP+GK STF F
Sbjct:   226 YFNKRGSGGYSDSSFPVGKSSTFMF 250

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

TAIR|locus:2179265 AT5G25030 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 75/202 (37%), Positives = 118/202 (58%)

Query:    27 EEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN 86
             +E K +  YS++ +IL+VGEG+FSFS +L++  GSA+NI A SLD  E + + +   + N
Sbjct:     4 QESKRLSRYSNEQKILVVGEGEFSFSLSLAKALGSATNITAISLDIREDLGRNYNNGKGN 63

Query:    87 LDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV 146
             ++ L++LG +++ GV+   MK    L+   +D IIFNFPHAG   K            + 
Sbjct:    64 VEELERLGCTVVRGVNVHSMKSDDRLAH--YDIIIFNFPHAGKRNK------------VF 109

Query:   147 EGFFRNASGMLRPR-GEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSN 205
              GF  +A  M++   GE+H++  T  PF KW ++ LA +  L  +  +QF K  +P  SN
Sbjct:   110 GGFMESAREMMKDEDGEIHITLNTLNPFNKWDLKALAEESGLRLIQRMQFIKWAFPSSSN 169

Query:   206 KKGAGSLCDDYFPLGKCSTFKF 227
             K+ +GS CD  +P+G   T+ F
Sbjct:   170 KRESGSNCDFIYPIGSAITYMF 191

GO:0000049 "tRNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

POMBASE|SPCC1919.13c SPCC1919.13c "ribosome biogenesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 270 (100.1 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 55/189 (29%), Positives = 108/189 (57%)

Query:    23 KDEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASN-ICASSLDSYETVVKKFK 81
             K++   E++++ +   ++ LL+GEG+FSF+F+L     S+   + A+S DS E + +K+ 
Sbjct:    42 KNKGPTERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYP 101

Query:    82 EARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRM 141
             +A   +  ++  G  ++H +DAT++  H +L  +KFD I +NFPH+G   K++D  ++  
Sbjct:   102 DAAEYISKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKGIKDQDRNILDN 161

Query:   142 HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYP 201
                L+  FF+ +  +L  +G + ++   T P+  W+++ LA+      L   +F    YP
Sbjct:   162 QKMLL-AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYP 220

Query:   202 GYSNKKGAG 210
              YS+++  G
Sbjct:   221 EYSHRRTIG 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0042254 "ribosome biogenesis" evidence=NAS

UNIPROTKB|G4MUS2 MGG_11170 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 158 (60.7 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 36/95 (37%), Positives = 55/95 (57%)

Query:   118 DRIIFNFPHAGFHGKEED-DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW 176
             DRI+FNFPH G  GK  D +  +R +  L+  FF+ A+  L P G + V+     P+  W
Sbjct:   196 DRILFNFPHVG--GKSTDVNRQVRYNQELLVDFFKRANCCLSPGGSIVVTLFEGEPYTLW 253

Query:   177 HIEELARKHSLLRLD-CVQFRKEDYPGYSNKKGAG 210
             ++ +LAR HS L+++    FR + YPGY + +  G
Sbjct:   254 NVRDLAR-HSGLQVERSFAFRADAYPGYHHARTLG 287

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-8403 si:dkey-71l1.3 "si:dkey-71l1.3" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 58/179 (32%), Positives = 88/179 (49%)

Query:    36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA 95
             S   ++LLVGEG+FSFS ALS+  G    + A+   S E    + +    N+  L++ G+
Sbjct:     2 SKTREVLLVGEGNFSFSAALSETGGDDVGVTATCFQS-ENETYRQEGVALNVQRLRERGS 60

Query:    96 SIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASG 155
              ++  VD T +KEH  L    FD +IFNFPH G     + + V+ M       FF +A  
Sbjct:    61 VVLFEVDCTCLKEHEALQDHLFDCVIFNFPHCGRKSGVKKNRVLLMK------FFLSAVA 114

Query:   156 MLRPRGEVHVS-------HKTTAPFCKWH----IEELARKHSLLRLDCVQFRKEDYPGY 203
             +L+  GEVHV+           +P  +WH    +  +A +  L+  +   F  E Y GY
Sbjct:   115 VLKDNGEVHVTLCNGQGGTPCDSPMREWHNSWQVVAMAAEAGLILREIRPFECEMYQGY 173

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0004826 "phenylalanine-tRNA ligase activity" evidence=IEA

GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|J9PAV7 ALG9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 58/175 (33%), Positives = 87/175 (49%)

Query:    40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH 99
             ++LLVGEG+FSF+ ALS+    ++ + A+ L     V +    AR NL  L++ G  I+ 
Sbjct:     5 RLLLVGEGNFSFAAALSETLDGSTRVTATCLQRAADVARD-PVARENLRRLRERGTEILF 63

Query:   100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP 159
              VD T + +  EL  R+FDRI FNFPH G          +  +  L+  FF++   +L  
Sbjct:    64 CVDCTRLADALELHPREFDRIYFNFPHCGRKAG------VAKNRELLAKFFQSCKDVLAE 117

Query:   160 RGEVHVS-----HKTTA--PFCKWH----IEELARKHSLLRLDCVQFRKEDYPGY 203
              GEVHV+       T+A  P  +WH    +  +A     +  +   F  E  PGY
Sbjct:   118 EGEVHVALCRGQGGTSADKPRREWHNSWQVVAMAALGGFILSEVHPFSCESVPGY 172

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

CGD|CAL0004722 orf19.7366 [Candida albicans (taxid:5476)]

 Score = 161 (61.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 34/108 (31%), Positives = 61/108 (56%)

Query:    15 KKEMSFTEKDEKEEEKWIMHYSS--KHQILLVGEGDFSFSFALS-QKFGSASNICASSLD 71
             +K     +K+ K   K +M ++     ++LL+GEGDFSF+ +L  Q F    N+ A+S D
Sbjct:    57 RKHNKAHQKEGKSTTKGLMPFNKDGNDKVLLIGEGDFSFAKSLILQNFIQPENLIATSFD 116

Query:    72 SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119
             S+E ++ K++     ++ LK +G  I+H +D T + +  +L+  K  R
Sbjct:   117 SFEQLINKYENVNEIIEELKNMGVIIMHEIDGTNLLKSLKLNPNKLKR 164

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A4G8 CaO19.7366 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 161 (61.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 34/108 (31%), Positives = 61/108 (56%)

Query:    15 KKEMSFTEKDEKEEEKWIMHYSS--KHQILLVGEGDFSFSFALS-QKFGSASNICASSLD 71
             +K     +K+ K   K +M ++     ++LL+GEGDFSF+ +L  Q F    N+ A+S D
Sbjct:    57 RKHNKAHQKEGKSTTKGLMPFNKDGNDKVLLIGEGDFSFAKSLILQNFIQPENLIATSFD 116

Query:    72 SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR 119
             S+E ++ K++     ++ LK +G  I+H +D T + +  +L+  K  R
Sbjct:   117 SFEQLINKYENVNEIIEELKNMGVIIMHEIDGTNLLKSLKLNPNKLKR 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
pfam10354	166	pfam10354, DUF2431, Domain of unknown function (DU	8e-69

>gnl|CDD|220711 pfam10354, DUF2431, Domain of unknown function (DUF2431)

 Score =  215 bits (549), Expect = 8e-69
 Identities = 82/167 (49%), Positives = 116/167 (69%), Gaps = 1/167 (0%)

Query: 42  LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGV 101
           LLVGEGDFSFS AL+  FGS +N+ A+SLDS E + +K+ +A  NL  L++ G +++HGV
Sbjct: 1   LLVGEGDFSFSLALATHFGSPTNLVATSLDSREELEEKYGDAEENLQELEENGVTVLHGV 60

Query: 102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRG 161
           DAT++K+H  L K  FDRIIFNFPH G   K+ D   IR++  L+ GFF+NAS +L+P G
Sbjct: 61  DATKLKKHFRLKKNSFDRIIFNFPHVGGKIKDSDRN-IRLNRELLRGFFKNASELLKPGG 119

Query: 162 EVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYPGYSNKKG 208
           E+HV+ K   P+  W+IE LA +  L+  + V+F   DYPGY +++ 
Sbjct: 120 EIHVTLKDGEPYNSWNIEALAAEAGLILEESVKFDISDYPGYKHRRT 166

This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known. Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	100.0
KOG4174	282	consensus Uncharacterized conserved protein [Funct	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.83
KOG4174	282	consensus Uncharacterized conserved protein [Funct	97.62
PRK14968	188	putative methyltransferase; Provisional	97.33
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.29
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.17
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.14
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.09
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.05
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.03
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.01
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.9
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.86
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.86
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.82
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.81
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.78
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.74
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	96.73
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.72
PRK14967	223	putative methyltransferase; Provisional	96.69
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.69
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.65
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.64
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.52
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.48
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.32
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.28
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.23
TIGR00438	188	rrmJ cell division protein FtsJ.	96.19
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.17
PRK03612	521	spermidine synthase; Provisional	96.15
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.11
PRK01581	374	speE spermidine synthase; Validated	96.07
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.98
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.86
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.84
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	95.83
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	95.78
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.64
PRK04457	262	spermidine synthase; Provisional	95.6
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.5
PLN02244	340	tocopherol O-methyltransferase	95.41
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.39
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.39
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	95.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.35
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.34
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.29
PRK04266	226	fibrillarin; Provisional	95.27
COG4123	248	Predicted O-methyltransferase [General function pr	95.17
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.11
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.08
PRK08317	241	hypothetical protein; Provisional	95.07
PRK11207	197	tellurite resistance protein TehB; Provisional	95.0
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.99
PLN02490	340	MPBQ/MSBQ methyltransferase	94.98
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.93
PRK00811	283	spermidine synthase; Provisional	94.78
COG1041	347	Predicted DNA modification methylase [DNA replicat	94.71
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.6
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.33
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.04
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	93.78
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	93.73
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	93.66
PTZ00146	293	fibrillarin; Provisional	93.64
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.38
PLN02366	308	spermidine synthase	93.24
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	93.22
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	93.16
PRK06922	677	hypothetical protein; Provisional	93.15
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	92.91
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	92.89
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	92.66
KOG2904	328	consensus Predicted methyltransferase [General fun	92.43
TIGR00740	239	methyltransferase, putative. A simple BLAST search	92.43
PHA03411	279	putative methyltransferase; Provisional	92.33
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	92.23
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	92.16
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	92.05
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	91.74
PLN02336	475	phosphoethanolamine N-methyltransferase	91.72
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	91.68
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	91.62
TIGR00452	314	methyltransferase, putative. Known examples to dat	91.28
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	91.24
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	91.23
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.07
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	90.78
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	90.71
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	90.21
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	90.09
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	89.87
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	89.7
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	89.61
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	89.53
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	89.19
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	89.01
PRK12335	287	tellurite resistance protein TehB; Provisional	88.9
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	88.85
COG2890	280	HemK Methylase of polypeptide chain release factor	88.8
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	88.63
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	88.36
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	87.97
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	87.18
PRK06940	275	short chain dehydrogenase; Provisional	86.74
PLN02336	475	phosphoethanolamine N-methyltransferase	86.63
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	85.91
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	85.74
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	85.61
PLN02823	336	spermine synthase	84.7
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	84.09
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	84.08
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	82.98
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	81.9
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	81.59
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	81.4
COG2520	341	Predicted methyltransferase [General function pred	81.2
PRK06202	232	hypothetical protein; Provisional	80.52
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	80.33
PRK10258	251	biotin biosynthesis protein BioC; Provisional	80.28
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	80.2

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=100.00  E-value=5.3e-63  Score=448.74  Aligned_cols=166  Identities=49%  Similarity=0.911  Sum_probs=162.8

Q ss_pred             EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEE
Q 014642           42 LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRII  121 (421)
Q Consensus        42 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrII  121 (421)
                      |||||||||||+|||++++++.+||||||||++++.+|||++.+||++|++.||+|+||||||+|++++.++.++|||||
T Consensus         1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi   80 (166)
T PF10354_consen    1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII   80 (166)
T ss_pred             CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence            89999999999999999988999999999999999999999999999999999999999999999999988999999999


Q ss_pred             EcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCCCCCC
Q 014642          122 FNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRKEDYP  201 (421)
Q Consensus       122 FNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~~~YP  201 (421)
                      |||||+| .+.++++++|++||+||.+||+||+++|+++|+|||||++|+||++|||+++|+++||+|.++++|++++||
T Consensus        81 FNFPH~G-~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~yp  159 (166)
T PF10354_consen   81 FNFPHVG-GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSDYP  159 (166)
T ss_pred             EeCCCCC-CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHHCC
Confidence            9999999 588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccC
Q 014642          202 GYSNKKG  208 (421)
Q Consensus       202 GY~hKRt  208 (421)
                      ||+||||
T Consensus       160 gY~~~rT  166 (166)
T PF10354_consen  160 GYEHKRT  166 (166)
T ss_pred             CcccCCC
Confidence            9999997

>KOG4174 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.6e-56  Score=427.15  Aligned_cols=206  Identities=46%  Similarity=0.807  Sum_probs=191.7

Q ss_pred             ccccceeeeccCCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHH-HHHHhhhhHHHHHHHHHhCCCEEEeecc
Q 014642           25 EKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYE-TVVKKFKEARSNLDTLKKLGASIIHGVD  102 (421)
Q Consensus        25 ~~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~e-eL~~KY~~a~~Nl~~Lr~~Gv~VlhgVD  102 (421)
                      +..+++|++||++.++||+|||||||||+||+.++| ++.||+|||||+++ +|..||+++.+||++|+.+|+.|+|+||
T Consensus        44 ~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vd  123 (282)
T KOG4174|consen   44 DGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVD  123 (282)
T ss_pred             ccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEeccc
Confidence            567899999999999999999999999999999999 89999999999999 9999999999999999999999999999


Q ss_pred             cCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHH-HhHHHHHHHHHhhHhccC-CCCeEEEEecCCCCcCcccHHH
Q 014642          103 ATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIR-MHMSLVEGFFRNASGMLR-PRGEVHVSHKTTAPFCKWHIEE  180 (421)
Q Consensus       103 ATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~-~nr~LL~~FF~SA~~lL~-~~GeIHVTLk~g~PY~sWnI~~  180 (421)
                      ||+|+.++.+..++||+|||||||.|..-+-++++++. .||.|+.+||++|++||+ +.|+|||||++++||+.|||+.
T Consensus       124 v~sl~~~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~  203 (282)
T KOG4174|consen  124 VTSLKFHADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKF  203 (282)
T ss_pred             ceeEEecccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhH
Confidence            99999999999999999999999999633335566666 699999999999999999 8999999999999999999999


Q ss_pred             HHHhCCcEEEEEeeCCCCCCCCCccccCCCCCCCCcccC--CCceeEEEEee
Q 014642          181 LARKHSLLRLDCVQFRKEDYPGYSNKKGAGSLCDDYFPL--GKCSTFKFGLY  230 (421)
Q Consensus       181 LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G~r~Dk~F~~--g~a~TfvF~k~  230 (421)
                      ||++.||.|.+...|+++.||||.|||++|.+||.|+..  +++..|.|.+.
T Consensus       204 Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~~~  255 (282)
T KOG4174|consen  204 LAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFLKF  255 (282)
T ss_pred             hhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEEee
Confidence            999999999999999999999999999999999998775  45667777655

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.83  E-value=4.3e-05  Score=70.30  Aligned_cols=146  Identities=14%  Similarity=0.237  Sum_probs=96.4

Q ss_pred             eeeccC-CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642           31 WIMHYS-SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH  109 (421)
Q Consensus        31 ~i~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~  109 (421)
                      |-.-|. ...+||=+|-|+=.|+.+||+.+. ..++++.-..  .++.+   .+..++....-.++.++ ..|+.++...
T Consensus         9 ~~~~f~~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~--~~~l~---~a~~~~~~~~l~ni~~i-~~d~~~~~~~   81 (194)
T TIGR00091         9 FATVFGNKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIH--TPIVL---AANNKANKLGLKNLHVL-CGDANELLDK   81 (194)
T ss_pred             HHHHhCCCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEee--HHHHH---HHHHHHHHhCCCCEEEE-ccCHHHHHHh
Confidence            444444 456899999999999999998874 4567665443  33333   24455544322245544 4588765422


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR  189 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L  189 (421)
                       .+....+|.|+.|||..-.+.+.      .++|.+...|++.+..+|+++|.|+++.... .|..|-++.+.+..+|..
T Consensus        82 -~~~~~~~d~v~~~~pdpw~k~~h------~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~-~~~~~~~~~~~~~~~f~~  153 (194)
T TIGR00091        82 -FFPDGSLSKVFLNFPDPWPKKRH------NKRRITQPHFLKEYANVLKKGGVIHFKTDNE-PLFEDMLKVLSENDLFEN  153 (194)
T ss_pred             -hCCCCceeEEEEECCCcCCCCCc------cccccCCHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHhCCCeEe
Confidence             12345899999999865432211      1244556789999999999999999887553 578888888888777776


Q ss_pred             EE
Q 014642          190 LD  191 (421)
Q Consensus       190 ~~  191 (421)
                      ..
T Consensus       154 ~~  155 (194)
T TIGR00091       154 TS  155 (194)
T ss_pred             cc
Confidence            54

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG4174 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=5.9e-06  Score=81.56  Aligned_cols=127  Identities=19%  Similarity=0.131  Sum_probs=105.9

Q ss_pred             hhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEcCCCCC
Q 014642           49 FSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAG  128 (421)
Q Consensus        49 FSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G  128 (421)
                      |+|+++|-.......+++|||+.+..++.+ -|.+.+|+.-++..|..+.+.++.++.+.-..+..+-|+-+.+=+||.|
T Consensus         1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g   79 (282)
T KOG4174|consen    1 FGFAARLKETLDLSTQLTATCLQRPAELAR-DPLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG   79 (282)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcchhhhcc-ChhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence            688888877665567999999998888766 4788999999999999999999999999988888899999999999999


Q ss_pred             CCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          129 FHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       129 ~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                      .  +++    .-.+..|...+|               -|++.+|-..|||+.|++-.+.++.+.-++.-
T Consensus        80 ~--sa~----ni~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl  127 (282)
T KOG4174|consen   80 R--SAG----NITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDVTSL  127 (282)
T ss_pred             c--ccc----ceeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccceeE
Confidence            4  121    224667777776               56778888999999999999999988755543

>PRK14968 putative methyltransferase; Provisional

Probab=97.33  E-value=0.012  Score=52.19  Aligned_cols=141  Identities=19%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hCCCEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK--KLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr--~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||-+|=|+=.++..|++.   +.+++++-.+.  +..+   .++.|+....  ..++.++. .|+.+   .  +.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~--~~~~---~a~~~~~~~~~~~~~~~~~~-~d~~~---~--~~   87 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINP--YAVE---CAKCNAKLNNIRNNGVEVIR-SDLFE---P--FR   87 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCH--HHHH---HHHHHHHHcCCCCcceEEEe-ccccc---c--cc
Confidence            45678999999999999999886   45788766552  2222   2445554322  22254443 34432   1  22


Q ss_pred             cCcccEEEEcCCCCCCCCCcccH--HHH-----HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDD--EVI-----RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~--~~I-----~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      ...||.|++|.|...........  ...     ......+..|++.+..+|+++|.+.+.+.+....  =.+..+..++|
T Consensus        88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--~~l~~~~~~~g  165 (188)
T PRK14968         88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--DEVLEYLEKLG  165 (188)
T ss_pred             ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--HHHHHHHHHCC
Confidence            34899999999976521000000  000     0125668899999999999999988877542211  13556777888


Q ss_pred             cEEEEE
Q 014642          187 LLRLDC  192 (421)
Q Consensus       187 L~L~~~  192 (421)
                      +.....
T Consensus       166 ~~~~~~  171 (188)
T PRK14968        166 FEAEVV  171 (188)
T ss_pred             Ceeeee
Confidence            876643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.29  E-value=0.00067  Score=61.23  Aligned_cols=114  Identities=21%  Similarity=0.305  Sum_probs=73.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=+|=|.==.|++|++... ...|+|+-.+  ....+   -++.|++...-.++.|+. -|.-   +  .+...+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~--~~a~~---~a~~n~~~n~~~~v~~~~-~d~~---~--~~~~~~   98 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDIN--PDALE---LAKRNAERNGLENVEVVQ-SDLF---E--ALPDGK   98 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESB--HHHHH---HHHHHHHHTTCTTEEEEE-SSTT---T--TCCTTC
T ss_pred             cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCC--HHHHH---HHHHHHHhcCcccccccc-cccc---c--cccccc
Confidence            567899999999888888887753 3356666444  33332   355666655433444432 2332   2  233689


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ||.||+|-|....  .+       ....++..|++.|..+|+++|++.+-.....
T Consensus        99 fD~Iv~NPP~~~~--~~-------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen   99 FDLIVSNPPFHAG--GD-------DGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             EEEEEE---SBTT--SH-------CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             eeEEEEccchhcc--cc-------cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            9999999995542  11       2456789999999999999999987665543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.17  E-value=0.00059  Score=56.19  Aligned_cols=115  Identities=24%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD  118 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD  118 (421)
                      .+||=+|=|.=+|++++++..  ..++++.-.|....-     -++.|+..+.-.+-.-++.-|+.++.+  .+...+||
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~-----~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D   72 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVE-----LARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD   72 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHH-----HHHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred             CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHH-----HHHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence            467778878888888888774  568888888754311     133454443222224566678877652  24568899


Q ss_pred             EEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          119 RIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       119 rIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .||+|-|..+..+      .....+.+...|++.|.++|+++|.+.+.+.
T Consensus        73 ~Iv~npP~~~~~~------~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   73 LIVTNPPYGPRSG------DKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EEEE--STTSBTT----------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCCCccccc------cchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999999987422      1223445888999999999999999887653

...

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.14  E-value=0.002  Score=65.35  Aligned_cols=114  Identities=21%  Similarity=0.327  Sum_probs=76.2

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD  118 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD  118 (421)
                      .+||=+|=|.=.++..|++... ...|+++-.+  ....+   .++.|++.-. ..+.+ +..|+..   .  + ..+||
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis--~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~fD  263 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVS--AAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRFD  263 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCcc
Confidence            4799999999999999998753 3456655443  22332   2455554421 22333 2345432   1  1 46799


Q ss_pred             EEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc
Q 014642          119 RIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW  176 (421)
Q Consensus       119 rIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW  176 (421)
                      .||.|.|. .|.   +       .+......|++.|.++|+++|+++|....--||..|
T Consensus       264 lIvsNPPFH~g~---~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~  312 (342)
T PRK09489        264 MIISNPPFHDGI---Q-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL  312 (342)
T ss_pred             EEEECCCccCCc---c-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence            99999994 442   1       234567899999999999999999988887888754

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.09  E-value=0.013  Score=54.86  Aligned_cols=147  Identities=18%  Similarity=0.207  Sum_probs=99.3

Q ss_pred             ecccccccccccceeeecc----------CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHH
Q 014642           17 EMSFTEKDEKEEEKWIMHY----------SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSN   86 (421)
Q Consensus        17 ~~~~~~~~~~~~~K~i~~Y----------ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~N   86 (421)
                      +|.+-..... .+.|..|+          .+..+||=||=|.=.+|..+++... +..+++  .|..+++.+   .++.|
T Consensus        16 ~~~~~~~~~~-~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~g--iD~s~~~l~---~A~~~   88 (187)
T PRK00107         16 KYNLTAIRDP-EELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARP-ELKVTL--VDSLGKKIA---FLREV   88 (187)
T ss_pred             cccccccCCH-HHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEE--EeCcHHHHH---HHHHH
Confidence            4555444444 23666555          3367999999999999999988653 334544  565554443   35556


Q ss_pred             HHHHHhCCCEEEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642           87 LDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus        87 l~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ++.+.-.++.++. -|+.++..     ..+||.|+.|.  .+             +   +..|++.+.++|+++|.+.+-
T Consensus        89 ~~~~~l~~i~~~~-~d~~~~~~-----~~~fDlV~~~~--~~-------------~---~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107         89 AAELGLKNVTVVH-GRAEEFGQ-----EEKFDVVTSRA--VA-------------S---LSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             HHHcCCCCEEEEe-ccHhhCCC-----CCCccEEEEcc--cc-------------C---HHHHHHHHHHhcCCCeEEEEE
Confidence            6655433454544 47776532     46899999873  11             1   357999999999999999988


Q ss_pred             ecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          167 HKTTAPFCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       167 Lk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                      ....   ..+.++++++..|+.+.......-
T Consensus       145 ~~~~---~~~~l~~~~~~~~~~~~~~~~~~~  172 (187)
T PRK00107        145 KGRD---PEEEIAELPKALGGKVEEVIELTL  172 (187)
T ss_pred             eCCC---hHHHHHHHHHhcCceEeeeEEEec
Confidence            6443   556788999999999998876653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.05  E-value=0.02  Score=53.16  Aligned_cols=109  Identities=18%  Similarity=0.335  Sum_probs=71.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=+|=|.=.++..|++..+...++++.-..  ++..+   .++.|+....-..+.++.+ |+.++.    +..
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~----~~~  112 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLS---VGRQKVKDAGLHNVELVHG-NAMELP----FDD  112 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCceEEEEe-chhcCC----CCC
Confidence            3457899999999999999999987655567665443  23322   2555554433224444444 666553    335


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ..||.|+.++..--.   ++           ...+++.+..+|+++|.+.+..
T Consensus       113 ~~fD~V~~~~~l~~~---~~-----------~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       113 NSFDYVTIGFGLRNV---PD-----------YMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             CCccEEEEecccccC---CC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence            789999998763221   11           1256788889999999987654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.03  E-value=0.017  Score=59.90  Aligned_cols=146  Identities=17%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=+|=|.=++|+.|++..+....|+|.-.+  +...   ..++.|++.+.-.++. +..-|++++....  . .
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l---~~~~~n~~~~g~~~v~-~~~~D~~~~~~~~--~-~  319 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKL---KLIEENAKRLGLTNIE-TKALDARKVHEKF--A-E  319 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHH---HHHHHHHHHcCCCeEE-EEeCCcccccchh--c-c
Confidence            456799999999999999999887544456665444  2222   2356666544222233 3445777764322  2 6


Q ss_pred             cccEEEEcCCCCCCCCCc---c------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhC
Q 014642          116 KFDRIIFNFPHAGFHGKE---E------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKH  185 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkE---d------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~a  185 (421)
                      .||+|+.|-|..|. |.-   .      ....+..-..+-..++..|..+|+|||.+..+.|+-.|- +...|..+.++.
T Consensus       320 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~  398 (444)
T PRK14902        320 KFDKILVDAPCSGL-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH  398 (444)
T ss_pred             cCCEEEEcCCCCCC-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence            79999999998874 310   0      112333344556789999999999999998877765442 455666655544


Q ss_pred             -CcEEEE
Q 014642          186 -SLLRLD  191 (421)
Q Consensus       186 -GL~L~~  191 (421)
                       ++.++.
T Consensus       399 ~~~~~~~  405 (444)
T PRK14902        399 PEFELVP  405 (444)
T ss_pred             CCcEEec
Confidence             465543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.01  E-value=0.012  Score=54.71  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=+|=|.=.|+.+|++.+. ..++++.  |......+   .+..|++...-..+.+ ..-|+.+.     +...+|
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~-~~~v~~i--D~~~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~-----~~~~~f  155 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERP-DARVTAV--DISPEALA---VARKNAARLGLDNVTF-LQSDWFEP-----LPGGKF  155 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCCCeEEE-EECchhcc-----CcCCce
Confidence            34899999999999999998763 3355544  43333322   3556665432212333 33355431     235789


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH  185 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a  185 (421)
                      |.||.|.|-............++.            .-..+..|++.+..+|+++|.+.+.+-.   ...-.+.++..++
T Consensus       156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l~~~  232 (251)
T TIGR03534       156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALFEAA  232 (251)
T ss_pred             eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHHHhC
Confidence            999999998864211111112221            1233568999999999999999887632   2334577778888


Q ss_pred             CcEEEEE
Q 014642          186 SLLRLDC  192 (421)
Q Consensus       186 GL~L~~~  192 (421)
                      |+..+..
T Consensus       233 gf~~v~~  239 (251)
T TIGR03534       233 GFADVET  239 (251)
T ss_pred             CCCceEE
Confidence            8865544

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.90  E-value=0.024  Score=58.92  Aligned_cols=148  Identities=19%  Similarity=0.232  Sum_probs=97.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++++||=+|=|-=.+|..|++..+....|+|  .|..+...+   .++.|++.+.-..+ .+..-|++++..........
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~rl~---~~~~n~~r~g~~~v-~~~~~D~~~~~~~~~~~~~~  325 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWA--VDRSASRLK---KLQENAQRLGLKSI-KILAADSRNLLELKPQWRGY  325 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEE--EcCCHHHHH---HHHHHHHHcCCCeE-EEEeCChhhccccccccccc
Confidence            4678999999999999999987654345655  454333332   35667654422223 44557888875432223467


Q ss_pred             ccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHh-CC
Q 014642          117 FDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARK-HS  186 (421)
Q Consensus       117 FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~-aG  186 (421)
                      ||+|+.|=|+.|.+.  + .+     ....+.....|....+.+|..+|++||.+..+.|+-.|- +.-.|..+.++ .+
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~  405 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD  405 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence            999999999988421  1 11     123444455667899999999999999999888887664 55666665444 46


Q ss_pred             cEEE
Q 014642          187 LLRL  190 (421)
Q Consensus       187 L~L~  190 (421)
                      +.+.
T Consensus       406 ~~~~  409 (434)
T PRK14901        406 WKLE  409 (434)
T ss_pred             cEec
Confidence            7654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.86  E-value=0.011  Score=54.55  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=84.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=||=|.=.+|..|+.... ..++  |..|...+..+   -++.|++.+.-.+++++. -|+.++.     ....
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V--~~iD~s~~~~~---~a~~~~~~~~~~~i~~i~-~d~~~~~-----~~~~  109 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARP-ELKL--TLLESNHKKVA---FLREVKAELGLNNVEIVN-GRAEDFQ-----HEEQ  109 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCC-CCeE--EEEeCcHHHHH---HHHHHHHHhCCCCeEEEe-cchhhcc-----ccCC
Confidence            478999999888888888876542 3345  45565444433   244555554322455444 4777752     2468


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ||.|+.|.  .+.                +..+++.+..+|+|+|.+.+.+.....-.-+.+++-+...|+..+++-+|.
T Consensus       110 fD~I~s~~--~~~----------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  171 (181)
T TIGR00138       110 FDVITSRA--LAS----------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLT  171 (181)
T ss_pred             ccEEEehh--hhC----------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccC
Confidence            99999874  210                235677778899999999988643322234455556666899999987776


Q ss_pred             CC
Q 014642          197 KE  198 (421)
Q Consensus       197 ~~  198 (421)
                      -.
T Consensus       172 ~~  173 (181)
T TIGR00138       172 GP  173 (181)
T ss_pred             CC
Confidence            44

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.86  E-value=0.024  Score=55.04  Aligned_cols=143  Identities=18%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=+|=|-=.+|..|++..+....|+|  .|......   ..+++|++.+.-..+ .+..-|++.+...    ..
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a--~D~~~~~l---~~~~~n~~~~g~~~v-~~~~~D~~~~~~~----~~  139 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVA--NEFSKSRT---KVLIANINRCGVLNV-AVTNFDGRVFGAA----VP  139 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEE--EcCCHHHH---HHHHHHHHHcCCCcE-EEecCCHHHhhhh----cc
Confidence            45678999999999999999887754445554  45433332   346667765532223 3455677765432    24


Q ss_pred             cccEEEEcCCCCCCCCC---c------ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHh-
Q 014642          116 KFDRIIFNFPHAGFHGK---E------EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARK-  184 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~Gk---E------d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~-  184 (421)
                      .||+|+.|=|+.|. |.   .      .....+.....+-...+.+|..+|+++|.+..+.|+-.|- +...|..+.++ 
T Consensus       140 ~fD~Vl~D~Pcsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~  218 (264)
T TIGR00446       140 KFDAILLDAPCSGE-GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR  218 (264)
T ss_pred             CCCEEEEcCCCCCC-cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence            59999999999985 31   1      1233455556677889999999999999999888887664 56777775554 


Q ss_pred             CCcEE
Q 014642          185 HSLLR  189 (421)
Q Consensus       185 aGL~L  189 (421)
                      .++.+
T Consensus       219 ~~~~~  223 (264)
T TIGR00446       219 PDVVE  223 (264)
T ss_pred             CCcEE
Confidence            35543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.82  E-value=0.0097  Score=65.62  Aligned_cols=161  Identities=17%  Similarity=0.130  Sum_probs=99.8

Q ss_pred             cccccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeec
Q 014642           24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHGV  101 (421)
Q Consensus        24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~VlhgV  101 (421)
                      |..++++|+..+.++.+||=+|=|.=.||+++++. | +..|  |+.|.-+...+   -++.|++...-.  .+ -+..-
T Consensus       525 Dqr~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V--~~vD~s~~al~---~a~~N~~~ng~~~~~v-~~i~~  596 (702)
T PRK11783        525 DHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AKST--TTVDMSNTYLE---WAERNFALNGLSGRQH-RLIQA  596 (702)
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCccce-EEEEc
Confidence            44567888888888999999999999999999875 3 3344  44564444333   366676543211  12 23445


Q ss_pred             ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHH
Q 014642          102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEEL  181 (421)
Q Consensus       102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~L  181 (421)
                      |+.+.-+.  + ..+||.||.|-|-.+. ++...  .+..-..-....+..|..+|+++|.+.++.+... +..  ..+.
T Consensus       597 D~~~~l~~--~-~~~fDlIilDPP~f~~-~~~~~--~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~  667 (702)
T PRK11783        597 DCLAWLKE--A-REQFDLIFIDPPTFSN-SKRME--DSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEG  667 (702)
T ss_pred             cHHHHHHH--c-CCCcCEEEECCCCCCC-CCccc--hhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHH
Confidence            66542211  1 4689999999998874 22200  1111122244566778899999999988776542 232  2667


Q ss_pred             HHhCCcEEEEEe-eCCCCCCC
Q 014642          182 ARKHSLLRLDCV-QFRKEDYP  201 (421)
Q Consensus       182 Aa~aGL~L~~~~-~F~~~~YP  201 (421)
                      +.++|+.+.... .-.+.|+|
T Consensus       668 ~~~~g~~~~~i~~~~~~~Dhp  688 (702)
T PRK11783        668 LAKLGLKAEEITAKTLPPDFA  688 (702)
T ss_pred             HHhCCCeEEEEecCCCCCCCC
Confidence            778888877664 33555665

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.81  E-value=0.028  Score=54.45  Aligned_cols=138  Identities=18%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=+|=|.=.++++|++... +.+++|.-.+  .+..+   -++.|++.   .|++++ .-|+.+.-.. .+ ..+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis--~~al~---~A~~N~~~---~~~~~~-~~D~~~~l~~-~~-~~~f  154 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADID--PAAVR---CARRNLAD---AGGTVH-EGDLYDALPT-AL-RGRV  154 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHH---cCCEEE-Eeechhhcch-hc-CCCE
Confidence            45899999999899999987763 3467765443  22222   35666643   355553 3465542111 11 2579


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH  185 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a  185 (421)
                      |.||.|-|-............++.+            .+++..++.+|..+|+++|.+.+.+-..+   .-.|.++.++.
T Consensus       155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~  231 (251)
T TIGR03704       155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARA  231 (251)
T ss_pred             eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHC
Confidence            9999999988642111111122222            34578999999999999999998876543   33677778777


Q ss_pred             CcEEE
Q 014642          186 SLLRL  190 (421)
Q Consensus       186 GL~L~  190 (421)
                      ||...
T Consensus       232 g~~~~  236 (251)
T TIGR03704       232 GLIAR  236 (251)
T ss_pred             CCCce
Confidence            77544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.78  E-value=0.03  Score=58.39  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk  113 (421)
                      .++.+||=+|=|-=..|..++...+.+..|+|.-.+ .+-+    ..+++|++.   .|+.  .+...|++++...   .
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis-~~rl----~~~~~n~~r---~g~~~v~~~~~Da~~l~~~---~  304 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS-REKI----QLVEKHAKR---LKLSSIEIKIADAERLTEY---V  304 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC-HHHH----HHHHHHHHH---cCCCeEEEEECchhhhhhh---h
Confidence            456788888888778888888776545567766443 2222    235666654   4542  3445688876432   2


Q ss_pred             cCcccEEEEcCCCCCCCCCcc---------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642          114 KRKFDRIIFNFPHAGFHGKEE---------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR  183 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd---------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa  183 (421)
                      ...||+|+.|=|..|. |.-.         ....+.....+-...+.+|..+|++||.+..+.|+-.|- +...|..+.+
T Consensus       305 ~~~fD~Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~  383 (431)
T PRK14903        305 QDTFDRILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY  383 (431)
T ss_pred             hccCCEEEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence            3579999999999886 3211         122344445566788999999999999999999987653 6778877544


Q ss_pred             -hCCcEEEEE
Q 014642          184 -KHSLLRLDC  192 (421)
Q Consensus       184 -~aGL~L~~~  192 (421)
                       +.++.+...
T Consensus       384 ~~~~~~~~~~  393 (431)
T PRK14903        384 EQKDAEVIDI  393 (431)
T ss_pred             hCCCcEEecc
Confidence             557776543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.74  E-value=0.034  Score=53.24  Aligned_cols=139  Identities=15%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...++++||-||=|.=-.+..+++..+...+|++.-..  ++..+   .++.|++.+.-..++++. -|+..|.    +.
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~---~A~~~~~~~g~~~v~~~~-~d~~~l~----~~  143 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLA---KARANARKAGYTNVEFRL-GEIEALP----VA  143 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHH---HHHHHHHHcCCCCEEEEE-cchhhCC----CC
Confidence            45678899999999866666677776654567776554  22332   255555443322344333 3555543    33


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--CCC-C-----------------c
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--TTA-P-----------------F  173 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~-P-----------------Y  173 (421)
                      ...||.|+.|.-..-.   .+           ....|+.+..+|+|+|.+.++=.  .+. |                 +
T Consensus       144 ~~~fD~Vi~~~v~~~~---~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (272)
T PRK11873        144 DNSVDVIISNCVINLS---PD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL  209 (272)
T ss_pred             CCceeEEEEcCcccCC---CC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence            5689999998532211   11           13567778899999999988521  111 1                 1


Q ss_pred             CcccHHHHHHhCCcEEEEEeeCC
Q 014642          174 CKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       174 ~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ...++.++.+++|+..++.....
T Consensus       210 ~~~e~~~~l~~aGf~~v~i~~~~  232 (272)
T PRK11873        210 QEEEYLAMLAEAGFVDITIQPKR  232 (272)
T ss_pred             CHHHHHHHHHHCCCCceEEEecc
Confidence            22245566677788776654443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=96.73  E-value=0.049  Score=50.26  Aligned_cols=133  Identities=18%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD  118 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD  118 (421)
                      ++||=||=|.=.++..|++.++ ..++++..+ |.+.+.    .+..++....-.+-.-+...|+.+..    + ...||
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~-s~~~~~----~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD   69 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTI-SPEQAE----VGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD   69 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEEC-CHHHHH----HHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence            3789999998888999998874 346666555 333221    24444433211111122335665431    1 24799


Q ss_pred             EEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-------------CcccHHHHHH
Q 014642          119 RIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-------------CKWHIEELAR  183 (421)
Q Consensus       119 rIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-------------~sWnI~~LAa  183 (421)
                      .|+-+  +-|++             +   ...+|+++..+|+|+|.+.++-......             +.=.+..+.+
T Consensus        70 ~I~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~  133 (224)
T smart00828       70 LVFGFEVIHHIK-------------D---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLA  133 (224)
T ss_pred             EeehHHHHHhCC-------------C---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHH
Confidence            99854  23332             1   3589999999999999988764211111             1113456788


Q ss_pred             hCCcEEEEEeeCCCC
Q 014642          184 KHSLLRLDCVQFRKE  198 (421)
Q Consensus       184 ~aGL~L~~~~~F~~~  198 (421)
                      ++||.+.+...+..+
T Consensus       134 ~~Gf~~~~~~~~~~~  148 (224)
T smart00828      134 RNNLRVVEGVDASLE  148 (224)
T ss_pred             HCCCeEEEeEECcHh
Confidence            899999999888654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.72  E-value=0.041  Score=52.21  Aligned_cols=142  Identities=16%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=+|-|.=.++.+|++... ...++++-.+  ....+   .++.|++......+.++. .|+...     +...
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis--~~~l~---~a~~n~~~~~~~~i~~~~-~d~~~~-----~~~~  174 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDIS--PEALA---VARRNAKHGLGARVEFLQ-GDWFEP-----LPGG  174 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHhCCCCcEEEEE-ccccCc-----CCCC
Confidence            3456899999999999999998863 4466666443  22222   356676611122344433 355321     2246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR  183 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa  183 (421)
                      +||.||.|.|.............++.            .-.++..|++.|..+|+++|.+.+.+-.   ...-++..+.+
T Consensus       175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l~  251 (275)
T PRK09328        175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALLA  251 (275)
T ss_pred             ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHHH
Confidence            89999999998874211101112221            2355788999999999999999986622   12234777777


Q ss_pred             hCCcEEEEE
Q 014642          184 KHSLLRLDC  192 (421)
Q Consensus       184 ~aGL~L~~~  192 (421)
                      ..|+.-+..
T Consensus       252 ~~gf~~v~~  260 (275)
T PRK09328        252 AAGFADVET  260 (275)
T ss_pred             hCCCceeEE
Confidence            888864444

>PRK14967 putative methyltransferase; Provisional

Probab=96.69  E-value=0.062  Score=50.42  Aligned_cols=141  Identities=15%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||-+|=|.=.++..|++. + ..++++.-.+. + ..+   -++.|++... ..+.++ .-|+.+.     +...
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~-~-~l~---~a~~n~~~~~-~~~~~~-~~d~~~~-----~~~~  100 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISR-R-AVR---SARLNALLAG-VDVDVR-RGDWARA-----VEFR  100 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCH-H-HHH---HHHHHHHHhC-CeeEEE-ECchhhh-----ccCC
Confidence            45679999999998888888875 3 34676665553 2 222   2455664332 123333 3455432     2346


Q ss_pred             cccEEEEcCCCCCCCCC--cccHHH----H-HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642          116 KFDRIIFNFPHAGFHGK--EEDDEV----I-RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL  188 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~Gk--Ed~~~~----I-~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~  188 (421)
                      .||.||.|-|.......  .+....    . .....++..|++.|..+|+++|.+.+.+.+-.  +.-++..+.+..|+.
T Consensus       101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~  178 (223)
T PRK14967        101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLD  178 (223)
T ss_pred             CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCC
Confidence            89999999776542110  000000    0 01345678999999999999999998766542  223566677777875


Q ss_pred             EEEE
Q 014642          189 RLDC  192 (421)
Q Consensus       189 L~~~  192 (421)
                      +...
T Consensus       179 ~~~~  182 (223)
T PRK14967        179 AEVV  182 (223)
T ss_pred             eEEE
Confidence            5444

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.69  E-value=0.051  Score=56.34  Aligned_cols=145  Identities=19%  Similarity=0.206  Sum_probs=95.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=+|=|-=+.++.|++..+. ..|+|  .|-.....+   .+++|++.+.- .++ +...|++++...  +...
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a--~D~s~~~l~---~~~~n~~~~g~-~~~-~~~~D~~~~~~~--~~~~  312 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQ-AQVVA--LDIDAQRLE---RVRENLQRLGL-KAT-VIVGDARDPAQW--WDGQ  312 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCC-CEEEE--EeCCHHHHH---HHHHHHHHcCC-CeE-EEEcCcccchhh--cccC
Confidence            45789999999999999999887632 35554  453333332   35566654321 233 445688876432  2346


Q ss_pred             cccEEEEcCCCCCCCCC----cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCcccHHHHHHh-
Q 014642          116 KFDRIIFNFPHAGFHGK----EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCKWHIEELARK-  184 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~Gk----Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sWnI~~LAa~-  184 (421)
                      .||+|+.|=|..|. |.    .+     ....+.....+...++..|..+|+|||.+.++.|.-.| -+.-+|..+.++ 
T Consensus       313 ~fD~Vl~D~Pcs~~-G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~  391 (427)
T PRK10901        313 PFDRILLDAPCSAT-GVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH  391 (427)
T ss_pred             CCCEEEECCCCCcc-cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC
Confidence            79999999998874 21    00     12344445567789999999999999999998886654 355667665444 


Q ss_pred             CCcEEEE
Q 014642          185 HSLLRLD  191 (421)
Q Consensus       185 aGL~L~~  191 (421)
                      .++.+..
T Consensus       392 ~~~~~~~  398 (427)
T PRK10901        392 PDAELLD  398 (427)
T ss_pred             CCCEEec
Confidence            4676654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.69  E-value=0.0093  Score=61.72  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeecccCCcCcccccccC
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG---ASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G---v~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+||=+|=|+=-.+..|++.+. ...|+++-.. +..+ +   -++.|++.....+   +.++    +.++-..  +...
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S-~~Av-~---~A~~N~~~n~~~~~~~v~~~----~~D~l~~--~~~~  297 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDES-PMAV-A---SSRLNVETNMPEALDRCEFM----INNALSG--VEPF  297 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCcccCceEEEE----Ecccccc--CCCC
Confidence            5899999999999999998763 4466665443 2222 2   3566765442211   2332    2222111  2345


Q ss_pred             cccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc------cHHHHHHhCCcE
Q 014642          116 KFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW------HIEELARKHSLL  188 (421)
Q Consensus       116 ~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nI~~LAa~aGL~  188 (421)
                      +||.|+.|-| |.|.. .         ...+...+|+.|...|+++|++.|-.....+|..|      +++.+|+..+|+
T Consensus       298 ~fDlIlsNPPfh~~~~-~---------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~~kf~  367 (378)
T PRK15001        298 RFNAVLCNPPFHQQHA-L---------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFV  367 (378)
T ss_pred             CEEEEEECcCcccCcc-C---------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccCCCEE
Confidence            7999999999 66531 1         22345789999999999999999987665666433      445567777888


Q ss_pred             EEEEee
Q 014642          189 RLDCVQ  194 (421)
Q Consensus       189 L~~~~~  194 (421)
                      +.+.++
T Consensus       368 vl~a~k  373 (378)
T PRK15001        368 VLKAVK  373 (378)
T ss_pred             EEEEEe
Confidence            877754

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.65  E-value=0.083  Score=47.65  Aligned_cols=138  Identities=18%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=+|=|+=.++.+|++..  + .+++.-++  .+..+   .++.|++... ..+.+ ...|+.+..      ...
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~~   82 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDIN--PFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RGK   82 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECC--HHHHH---HHHHHHHHcC-CceEE-EEccccccc------CCc
Confidence            34689999999999999998763  2 56666444  33322   3556664321 22333 334554421      247


Q ss_pred             ccEEEEcCCCCCCCCCc--ccHHHHH-----HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642          117 FDRIIFNFPHAGFHGKE--EDDEVIR-----MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR  189 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkE--d~~~~I~-----~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L  189 (421)
                      ||.|+.|-|+.-..+..  ++..+..     ....++..|+..+..+|+++|.+.+......  +.=.+.++.++.|+.+
T Consensus        83 fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~  160 (179)
T TIGR00537        83 FDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRY  160 (179)
T ss_pred             ccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeE
Confidence            99999999986432111  1111111     2356789999999999999999888664332  1234566677778776


Q ss_pred             EEE
Q 014642          190 LDC  192 (421)
Q Consensus       190 ~~~  192 (421)
                      ...
T Consensus       161 ~~~  163 (179)
T TIGR00537       161 EIV  163 (179)
T ss_pred             EEE
Confidence            644

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.64  E-value=0.034  Score=55.48  Aligned_cols=134  Identities=19%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++++||=+|=|.=+|+..++..   +..+++.-.|  ..+.+   .+..|++...-.++. +..-|++++..    ..
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~--~~~~~---~a~~nl~~~g~~~i~-~~~~D~~~l~~----~~  246 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDID--WKMVA---GARINLEHYGIEDFF-VKRGDATKLPL----SS  246 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCC--HHHHH---HHHHHHHHhCCCCCe-EEecchhcCCc----cc
Confidence            456678887655555565554432   3467766444  33332   366777654333333 45668888743    24


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      ..||.||.|-|-....+...     .....|...++..+.++|+++|.+.+.+.+..     ++.++++.+|+ +...
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~-----~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAG-----DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VVKR  313 (329)
T ss_pred             CCCCEEEECCCCcCcccccC-----CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-chhe
Confidence            68999999988643222110     12346788999999999999999988876543     45678999999 6554

This family is found exclusively in the Archaea.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.61  E-value=0.06  Score=56.14  Aligned_cols=142  Identities=18%  Similarity=0.260  Sum_probs=96.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk  113 (421)
                      .++++||=+|-|-=.+|..|++..+....|+  +.|..+...+   .+++|++.   .|+.  ....-|+.++.     .
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~--avD~s~~~l~---~~~~~~~~---~g~~~v~~~~~Da~~~~-----~  315 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQIT--AVDRYPQKLE---KIRSHASA---LGITIIETIEGDARSFS-----P  315 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEE--EEECCHHHHH---HHHHHHHH---hCCCeEEEEeCcccccc-----c
Confidence            3567999999999889999988765444454  4564444433   35566654   3542  34456776653     2


Q ss_pred             cCcccEEEEcCCCCCCCCC----c-----ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642          114 KRKFDRIIFNFPHAGFHGK----E-----EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR  183 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~Gk----E-----d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa  183 (421)
                      ...||+|+.+=|..|. |.    .     .....+.....+-..++.+|..+|++||.+..+.|+-.|- |..+|..+.+
T Consensus       316 ~~~fD~Vl~D~Pcsg~-g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~  394 (445)
T PRK14904        316 EEQPDAILLDAPCTGT-GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ  394 (445)
T ss_pred             CCCCCEEEEcCCCCCc-chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence            3579999999999985 31    1     1223444445566789999999999999999999988765 5788887655


Q ss_pred             hC-CcEEEE
Q 014642          184 KH-SLLRLD  191 (421)
Q Consensus       184 ~a-GL~L~~  191 (421)
                      .+ ++.+..
T Consensus       395 ~~~~~~~~~  403 (445)
T PRK14904        395 RHPEFSAEP  403 (445)
T ss_pred             hCCCCEEec
Confidence            44 566543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.52  E-value=0.011  Score=54.94  Aligned_cols=145  Identities=16%  Similarity=0.206  Sum_probs=89.4

Q ss_pred             ceeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeeccc-CCc
Q 014642           29 EKWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDA-TEM  106 (421)
Q Consensus        29 ~K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDA-TkL  106 (421)
                      ..|...|.. ..+||=+|=|.=.++..|++.+. ..+++|.-.+.  +..+   .+..|++...-.++.++ .-|+ ..+
T Consensus        31 ~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~--~~i~---~a~~~~~~~~~~~v~~~-~~d~~~~l  103 (202)
T PRK00121         31 LDWAELFGNDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHE--PGVG---KALKKIEEEGLTNLRLL-CGDAVEVL  103 (202)
T ss_pred             CCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEech--HHHH---HHHHHHHHcCCCCEEEE-ecCHHHHH
Confidence            455555555 56899999999999999988763 34677766553  2222   24445543322234443 3476 554


Q ss_pred             CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      ...  +....||.|+.|||........+      ..+.+...|++.+..+|+|+|.+.|+...- .+ ...+.+...+.|
T Consensus       104 ~~~--~~~~~~D~V~~~~~~p~~~~~~~------~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~-~~-~~~~~~~~~~~g  173 (202)
T PRK00121        104 LDM--FPDGSLDRIYLNFPDPWPKKRHH------KRRLVQPEFLALYARKLKPGGEIHFATDWE-GY-AEYMLEVLSAEG  173 (202)
T ss_pred             HHH--cCccccceEEEECCCCCCCcccc------ccccCCHHHHHHHHHHcCCCCEEEEEcCCH-HH-HHHHHHHHHhCc
Confidence            321  33567999999998543211111      122345789999999999999999876432 22 234556666677


Q ss_pred             cEEE
Q 014642          187 LLRL  190 (421)
Q Consensus       187 L~L~  190 (421)
                      +...
T Consensus       174 ~~~~  177 (202)
T PRK00121        174 GFLV  177 (202)
T ss_pred             cccc
Confidence            7554

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.48  E-value=0.059  Score=53.13  Aligned_cols=135  Identities=19%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ..+||=+|=|.=.++.+|++... ..+++|.  |-..+..+   -++.|++...-. .+.++. -|+.+     .+...+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~av--Dis~~al~---~A~~n~~~~~~~~~i~~~~-~D~~~-----~~~~~~  189 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAV--DISPDALA---VAEINIERHGLEDRVTLIQ-SDLFA-----ALPGRK  189 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCCCCcEEEEE-Cchhh-----ccCCCC
Confidence            46899999999999999998763 3456555  53233332   356666543211 133333 35532     123457


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH  185 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a  185 (421)
                      ||.||.|=|-+...........++           .--.++..+++.|.++|+++|.+.+.+-..+   . .+.++...+
T Consensus       190 fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~---~-~v~~~~~~~  265 (284)
T TIGR03533       190 YDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM---E-ALEEAYPDV  265 (284)
T ss_pred             ccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHHhC
Confidence            999999998876321111111121           0124578899999999999999998875322   1 466666666


Q ss_pred             CcE
Q 014642          186 SLL  188 (421)
Q Consensus       186 GL~  188 (421)
                      |+.
T Consensus       266 ~~~  268 (284)
T TIGR03533       266 PFT  268 (284)
T ss_pred             CCc
Confidence            643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.32  E-value=0.053  Score=40.90  Aligned_cols=103  Identities=20%  Similarity=0.305  Sum_probs=65.7

Q ss_pred             eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642           40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR  119 (421)
Q Consensus        40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr  119 (421)
                      +||-+|.|.-.++..+++ . ....+++...+...  ...   +..+........+++ ...|+.+...   .....||.
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~d~   69 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVA--LEL---ARKAAAALLADNVEV-LKGDAEELPP---EADESFDV   69 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHH--HHH---HHHHHhcccccceEE-EEcChhhhcc---ccCCceEE
Confidence            578899999999999888 2 35577777665322  111   111111111112333 4456665543   23467999


Q ss_pred             EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      |+.|.|.-..             ......+++.+..+|+++|.+.++
T Consensus        70 i~~~~~~~~~-------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          70 IISDPPLHHL-------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEEccceeeh-------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999986652             344667888888999999999887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.28  E-value=0.043  Score=51.72  Aligned_cols=121  Identities=16%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc---
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH---  109 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~---  109 (421)
                      ..+.++++||=+|=|.=+|+..|++..+....|+|.-++..    .            ...|+.++.+ |++++...   
T Consensus        47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~------------~~~~v~~i~~-D~~~~~~~~~i  109 (209)
T PRK11188         47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----D------------PIVGVDFLQG-DFRDELVLKAL  109 (209)
T ss_pred             ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----c------------CCCCcEEEec-CCCChHHHHHH
Confidence            34577889999999999999999998765567888877651    0            1136777766 88885411   


Q ss_pred             -cccccCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642          110 -SELSKRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC  174 (421)
Q Consensus       110 -~~Lk~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~  174 (421)
                       ..+....||.|+-|. ||...  ...  ..+..+-.++...++.+..+|++||.+.|.+..+..+.
T Consensus       110 ~~~~~~~~~D~V~S~~~~~~~g--~~~--~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~  172 (209)
T PRK11188        110 LERVGDSKVQVVMSDMAPNMSG--TPA--VDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD  172 (209)
T ss_pred             HHHhCCCCCCEEecCCCCccCC--ChH--HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH
Confidence             113457899999998 88853  211  12233344567899999999999999999888776433

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.23  E-value=0.14  Score=53.07  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-E--eecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-I--HGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-l--hgVDATkL~~~~~L  112 (421)
                      .++++||=+|=|-=.+|..+++..+ ...|+|.-.+  +...+   .+++|++.   .|+.+ +  ..-|+..+...  .
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~--~~~l~---~~~~n~~r---~g~~~~v~~~~~d~~~~~~~--~  305 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAP-QAQVVALDIH--EHRLK---RVYENLKR---LGLTIKAETKDGDGRGPSQW--A  305 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCC--HHHHH---HHHHHHHH---cCCCeEEEEecccccccccc--c
Confidence            4568999999999999999998775 4456665443  32222   35566654   45542 1  23344433221  2


Q ss_pred             ccCcccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHH
Q 014642          113 SKRKFDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELAR  183 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa  183 (421)
                      ....||+|+-+=|..|.+.  + .+     ....+..-..|-..++.+|..+|+|||.+.++.|+-.|- |.+.|..+-+
T Consensus       306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~  385 (426)
T TIGR00563       306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ  385 (426)
T ss_pred             cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence            3467999999999998521  1 11     223455555677889999999999999999999987664 6778877554


Q ss_pred             hC-CcEE
Q 014642          184 KH-SLLR  189 (421)
Q Consensus       184 ~a-GL~L  189 (421)
                      +. ++.+
T Consensus       386 ~~~~~~~  392 (426)
T TIGR00563       386 EHPDFPF  392 (426)
T ss_pred             hCCCCee
Confidence            43 5543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.19  E-value=0.047  Score=49.69  Aligned_cols=115  Identities=17%  Similarity=0.169  Sum_probs=75.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc----
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS----  110 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~----  110 (421)
                      ..++++||-+|=|.=.++..+++.......|+|.-.+..  .              +..++. ++..|+++.....    
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------------~~~~i~-~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------------PIENVD-FIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------------cCCCce-EEEeeCCChhHHHHHHH
Confidence            356889999999999999999988754557888766542  1              123555 3445776543110    


Q ss_pred             ccccCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          111 ELSKRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       111 ~Lk~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .+....||.|+.|. ||..  |....  ..-...+++..++..+..+|+++|.+.|...+.
T Consensus        93 ~~~~~~~D~V~~~~~~~~~--g~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNIS--GYWDI--DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HhCCCCccEEEcCCCCCCC--CCccc--cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            12356799999987 5542  11111  111234567889999999999999999976544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.17  E-value=0.069  Score=55.49  Aligned_cols=161  Identities=16%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             cccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeeccc
Q 014642           26 KEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK--LGASIIHGVDA  103 (421)
Q Consensus        26 ~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--~Gv~VlhgVDA  103 (421)
                      .++..|+..+..+.+||=+|=|.=+|+++.+..  .+..|++  .|..+...+   -+++|++...-  ..+.++ .-|+
T Consensus       209 r~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~--VD~s~~al~---~a~~N~~~Ngl~~~~v~~i-~~D~  280 (396)
T PRK15128        209 RDSRLATRRYVENKRVLNCFSYTGGFAVSALMG--GCSQVVS--VDTSQEALD---IARQNVELNKLDLSKAEFV-RDDV  280 (396)
T ss_pred             HHHHHHHHHhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEE--EECCHHHHH---HHHHHHHHcCCCCCcEEEE-EccH
Confidence            446677777888889998888887887776542  2445655  454333333   36677655321  123333 3466


Q ss_pred             CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc----ccHH
Q 014642          104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK----WHIE  179 (421)
Q Consensus       104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnI~  179 (421)
                      -+.-........+||.||.|=|-... +++    .+..-..-...++..|.++|+++|.+...-|.+. .+.    .-|.
T Consensus       281 ~~~l~~~~~~~~~fDlVilDPP~f~~-~k~----~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~  354 (396)
T PRK15128        281 FKLLRTYRDRGEKFDVIVMDPPKFVE-NKS----QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIA  354 (396)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCCC-ChH----HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHH
Confidence            55322111124689999999997542 222    1221122255667789999999999998888763 222    2344


Q ss_pred             HHHHhCCc--EEEEEeeCCCCCCC
Q 014642          180 ELARKHSL--LRLDCVQFRKEDYP  201 (421)
Q Consensus       180 ~LAa~aGL--~L~~~~~F~~~~YP  201 (421)
                      +.|.++|-  .+++. .-++.|+|
T Consensus       355 ~aa~~~~~~~~~l~~-~~~~~DhP  377 (396)
T PRK15128        355 DAAIDAGRDVQFIEQ-FRQAADHP  377 (396)
T ss_pred             HHHHHcCCeEEEEEE-cCCCCCCC
Confidence            56666654  44443 23566666

>PRK03612 spermidine synthase; Provisional

Probab=96.15  E-value=0.033  Score=59.52  Aligned_cols=135  Identities=20%  Similarity=0.289  Sum_probs=85.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhH-HHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEA-RSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a-~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      +.++||.+|=|+-..+..++++ +....|++--.|.+ -++.++++.. .-|-..+..-.++++.+ |+.+.-..   ..
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~~  371 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---LA  371 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---CC
Confidence            4568999999999999998874 33357888777742 1222221110 00111233345677665 77763221   13


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc----CcccHHHHHHhCCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF----CKWHIEELARKHSL  187 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnI~~LAa~aGL  187 (421)
                      ++||.||-|+|+....+         ..+..-..||+.+.+.|+|+|.+.+...  .|+    .-|.+.+..++.|+
T Consensus       372 ~~fDvIi~D~~~~~~~~---------~~~L~t~ef~~~~~~~L~pgG~lv~~~~--~~~~~~~~~~~i~~~l~~~gf  437 (521)
T PRK03612        372 EKFDVIIVDLPDPSNPA---------LGKLYSVEFYRLLKRRLAPDGLLVVQST--SPYFAPKAFWSIEATLEAAGL  437 (521)
T ss_pred             CCCCEEEEeCCCCCCcc---------hhccchHHHHHHHHHhcCCCeEEEEecC--CcccchHHHHHHHHHHHHcCC
Confidence            68999999999764211         1222236799999999999999887653  343    34788888888888

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.11  E-value=0.049  Score=53.80  Aligned_cols=130  Identities=24%  Similarity=0.384  Sum_probs=78.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeecccCCcCccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG----ASIIHGVDATEMKEHS  110 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATkL~~~~  110 (421)
                      -.++++||=+|=|-=+++.-+|+.+|  .+|++-++. .++..    .+.+   .+++.|    +.|.. .|..++..  
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS-~~Q~~----~a~~---~~~~~gl~~~v~v~~-~D~~~~~~--  126 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLS-EEQAE----YARE---RIREAGLEDRVEVRL-QDYRDLPG--  126 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHH---HHHCSTSSSTEEEEE-S-GGG-----
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECC-HHHHH----HHHH---HHHhcCCCCceEEEE-eeccccCC--
Confidence            45688999999999999999999984  567777763 33221    2322   344555    44433 46655432  


Q ss_pred             ccccCcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE---ecCCC--------------
Q 014642          111 ELSKRKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS---HKTTA--------------  171 (421)
Q Consensus       111 ~Lk~~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT---Lk~g~--------------  171 (421)
                           +||+||--  |-|+|.   +        |   +..||+.+..+|+|+|.+.|.   ..+..              
T Consensus       127 -----~fD~IvSi~~~Ehvg~---~--------~---~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k  187 (273)
T PF02353_consen  127 -----KFDRIVSIEMFEHVGR---K--------N---YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK  187 (273)
T ss_dssp             -----S-SEEEEESEGGGTCG---G--------G---HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH
T ss_pred             -----CCCEEEEEechhhcCh---h--------H---HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE
Confidence                 89999876  899984   1        1   458999999999999997543   32210              


Q ss_pred             ---C----cCcccHHHHHHhCCcEEEEEeeCC
Q 014642          172 ---P----FCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       172 ---P----Y~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                         |    -+.-.|...+++.||.+.....+.
T Consensus       188 yiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  188 YIFPGGYLPSLSEILRAAEDAGLEVEDVENLG  219 (273)
T ss_dssp             HTSTTS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred             eeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence               1    022345566778889888776653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK01581 speE spermidine synthase; Validated

Probab=96.07  E-value=0.046  Score=56.91  Aligned_cols=144  Identities=16%  Similarity=0.205  Sum_probs=89.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHH-HHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEAR-SNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~-~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      +..+||++|=|+-+.++.++++ ....+|++--+|.+ -++.++|+.-. -|-..+..-.++|+++ ||.+.-..   ..
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~---~~  224 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS---PS  224 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh---cC
Confidence            3469999999998877777764 34567988888853 23334443211 1111223334555443 55542111   23


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc----ccHHHHHHhCCcEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK----WHIEELARKHSLLRL  190 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s----WnI~~LAa~aGL~L~  190 (421)
                      .+||.||-++|..-...         .....-..||+.+...|+|+|-+.+.  .+.|...    |.+...-+++++...
T Consensus       225 ~~YDVIIvDl~DP~~~~---------~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        225 SLYDVIIIDFPDPATEL---------LSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             CCccEEEEcCCCccccc---------hhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHhCCceE
Confidence            67999999998643110         12333478999999999999987665  3344433    888888888888777


Q ss_pred             EEeeCC
Q 014642          191 DCVQFR  196 (421)
Q Consensus       191 ~~~~F~  196 (421)
                      .-.-+-
T Consensus       294 ~y~t~v  299 (374)
T PRK01581        294 SYHTIV  299 (374)
T ss_pred             EEEEec
Confidence            555553

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=95.98  E-value=0.048  Score=44.38  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ++.+||=+|=|.=+++..|++.+. +.+++|.-++  +++.+   -+++|+.+.... .++ ++.-|+ .....   ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~i~-~~~~d~-~~~~~---~~~   69 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDIS--PEMLE---IARERAAEEGLSDRIT-FVQGDA-EFDPD---FLE   69 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESS--HHHHH---HHHHHHHHTTTTTTEE-EEESCC-HGGTT---TSS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCC--HHHHH---HHHHHHHhcCCCCCeE-EEECcc-ccCcc---cCC
Confidence            467999999999999999999664 5567776654  33332   355666442222 333 444566 22111   235


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .||.|+.+. .+...-       +  +..-...+++.+.++|+|+|.+.|+-
T Consensus        70 ~~D~v~~~~-~~~~~~-------~--~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   70 PFDLVICSG-FTLHFL-------L--PLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CEEEEEECS-GSGGGC-------C--HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEECC-Cccccc-------c--chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            699999998 432100       0  11334567888999999999999875

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.86  E-value=0.062  Score=48.77  Aligned_cols=129  Identities=21%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=+++..+++... ..++++  .|......+   .+++|++.+.-.+++++.+ |+..     .+ ..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~--vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~-~~   96 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTA--IERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL-PG   96 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEE--EECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-Cc
Confidence            4677999999999999999998753 345555  453333332   3566776554334665543 4421     12 25


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .||.|+.+...    +             .+..++..+..+|+++|.+.+.....  .+.=++..+.++.|+...+....
T Consensus        97 ~~D~v~~~~~~----~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287         97 KADAIFIGGSG----G-------------NLTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             CCCEEEECCCc----c-------------CHHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCCCcceEEEE
Confidence            79999987431    1             13457788999999999998764321  11124566888889876665444


Q ss_pred             C
Q 014642          196 R  196 (421)
Q Consensus       196 ~  196 (421)
                      .
T Consensus       158 ~  158 (187)
T PRK08287        158 Q  158 (187)
T ss_pred             E
Confidence            3

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.84  E-value=0.25  Score=40.47  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      .+.+||=+|-|.=.++..|++..+ +.++++.-+.  +...+   .++.|++.+.-..+.+ +.-|+.....   ....+
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~   88 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERN--PEALR---LIERNARRFGVSNIVI-VEGDAPEALE---DSLPE   88 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCC--HHHHH---HHHHHHHHhCCCceEE-EeccccccCh---hhcCC
Confidence            456999999999999999998864 3466655543  22222   3555666553323433 3344443211   11257


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ||.|+...+.      .           .+..+++.+.++|+++|.+.++.-
T Consensus        89 ~D~v~~~~~~------~-----------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        89 PDRVFIGGSG------G-----------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             CCEEEECCcc------h-----------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            9999985421      0           134889999999999999998763

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=95.83  E-value=0.14  Score=54.05  Aligned_cols=143  Identities=15%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=+|=|.=.++.+|++... ..+++|+-.+  ++..+   .+++|++.+. ..++++. -|..+..  . ....
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS--~~ALe---~AreNa~~~g-~rV~fi~-gDl~e~~--l-~~~~  318 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERP-DAFVRASDIS--PPALE---TARKNAADLG-ARVEFAH-GSWFDTD--M-PSEG  318 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcC-CcEEEEE-cchhccc--c-ccCC
Confidence            3456899999999889999987763 4467666444  33332   3667776542 1233332 3443321  1 1234


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK  184 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~  184 (421)
                      +||.||.|=|.+....++.....++           .-.+.++.++..+...|+++|.+.+.+-..   ..-.++++.++
T Consensus       319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---Q~e~V~~ll~~  395 (423)
T PRK14966        319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---QGAAVRGVLAE  395 (423)
T ss_pred             CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---HHHHHHHHHHH
Confidence            7999999999987421111111111           112346788999999999999987766332   23368888888


Q ss_pred             CCcEEEEE
Q 014642          185 HSLLRLDC  192 (421)
Q Consensus       185 aGL~L~~~  192 (421)
                      .|+..++.
T Consensus       396 ~Gf~~v~v  403 (423)
T PRK14966        396 NGFSGVET  403 (423)
T ss_pred             CCCcEEEE
Confidence            88876555

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=95.78  E-value=0.074  Score=55.62  Aligned_cols=133  Identities=15%  Similarity=0.237  Sum_probs=90.8

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      +..+|=||=|+=.|++.||+.+ ...+++|.-....  +..   .+..++....-.++.++ ..||..+-..  +....+
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~--~i~---~a~~ka~~~gL~NV~~i-~~DA~~ll~~--~~~~s~  193 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTP--SIE---QVLKQIELLNLKNLLII-NYDARLLLEL--LPSNSV  193 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHH--HHH---HHHHHHHHcCCCcEEEE-ECCHHHhhhh--CCCCce
Confidence            4579999999999999999987 4568888766532  121   13333332211234444 6788876543  456889


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHh-HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMH-MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR  189 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~n-r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L  189 (421)
                      |+|+.|||-.-.+  +       .| |.....|+..+..+|++||.|++.-..- +|-.|-++.+.+...+.+
T Consensus       194 D~I~lnFPdPW~K--k-------rHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~-~y~~~~~e~~~~~~~~~~  256 (390)
T PRK14121        194 EKIFVHFPVPWDK--K-------PHRRVISEDFLNEALRVLKPGGTLELRTDSE-LYFEFSLELFLKLPKAKI  256 (390)
T ss_pred             eEEEEeCCCCccc--c-------chhhccHHHHHHHHHHHcCCCcEEEEEEECH-HHHHHHHHHHHhCCCcee
Confidence            9999999855432  1       23 3346789999999999999999987664 588888887766655554

>TIGR00417 speE spermidine synthase

Probab=95.64  E-value=0.059  Score=52.41  Aligned_cols=109  Identities=16%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeecccCCcCcccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK----KLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr----~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..+||.||-|+-+++..|+++. +..++++...|..  +.+   .+++++..+.    ...++++. -|+.+.-..   .
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~--vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~---~  142 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEK--VIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD---T  142 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHH--HHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh---C
Confidence            4599999999999999998764 3457888877742  222   1333333332    22344443 454332111   1


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .++||.||.+.|..-.  ..        .......||+.+..+|+++|.+.+.
T Consensus       143 ~~~yDvIi~D~~~~~~--~~--------~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVG--PA--------ETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCC--cc--------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence            3689999999875321  10        1123479999999999999998876

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK04457 spermidine synthase; Provisional

Probab=95.60  E-value=0.028  Score=54.81  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ...+||.||=|.-++++.|++.++ ...|++--+|.  ++.+   -++++...-. ...++|+.+ ||.+.-..   ...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp--~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~~  135 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINP--QVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HRH  135 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCH--HHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CCC
Confidence            356899999999999999998874 45676666653  2332   1333332211 124667665 77654221   135


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                      +||.|+.|.-+...  ..        .......||+.|..+|+|+|.+.|.+-...+
T Consensus       136 ~yD~I~~D~~~~~~--~~--------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~  182 (262)
T PRK04457        136 STDVILVDGFDGEG--II--------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK  182 (262)
T ss_pred             CCCEEEEeCCCCCC--Cc--------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence            79999998543221  10        0111369999999999999999998765443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.50  E-value=0.14  Score=54.80  Aligned_cols=140  Identities=19%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ..+||=+|=|.=.++.+|++.+. ...++|+-.+ .+.+ +   -++.|+....-. .+.+ ...|+..     .+....
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis-~~al-~---~A~~N~~~~~l~~~v~~-~~~D~~~-----~~~~~~  206 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDIS-LDAI-E---VAKSNAIKYEVTDRIQI-IHSNWFE-----NIEKQK  206 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECC-HHHH-H---HHHHHHHHcCCccceee-eecchhh-----hCcCCC
Confidence            35899999999999999988764 3467666443 3333 2   356676443211 1332 3334422     122457


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK  184 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~  184 (421)
                      ||.||.|=|.+...-.......+..+            ...+..++..|..+|+++|.+.+.+-..   ....|..+.++
T Consensus       207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~---q~~~v~~~~~~  283 (506)
T PRK01544        207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK---QEEAVTQIFLD  283 (506)
T ss_pred             ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc---hHHHHHHHHHh
Confidence            99999999998742111111111111            2456778899999999999998876433   34467778888


Q ss_pred             CCcEEEEE
Q 014642          185 HSLLRLDC  192 (421)
Q Consensus       185 aGL~L~~~  192 (421)
                      .|+..+..
T Consensus       284 ~g~~~~~~  291 (506)
T PRK01544        284 HGYNIESV  291 (506)
T ss_pred             cCCCceEE
Confidence            88865544

>PLN02244 tocopherol O-methyltransferase

Probab=95.41  E-value=0.51  Score=47.63  Aligned_cols=138  Identities=19%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EE-EeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SI-IHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~V-lhgVDATkL~~~~~L  112 (421)
                      .+..+||=||=|.=.++..|++.++  .+|++.-++ .+.+ +   .+..+++   +.|.  .| +..-|+..+.    +
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s-~~~i-~---~a~~~~~---~~g~~~~v~~~~~D~~~~~----~  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLS-PVQA-A---RANALAA---AQGLSDKVSFQVADALNQP----F  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECC-HHHH-H---HHHHHHH---hcCCCCceEEEEcCcccCC----C
Confidence            4567999999999999999998873  467766543 2222 2   1333322   2232  22 2334777653    3


Q ss_pred             ccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe-cC--CCC----c----------
Q 014642          113 SKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH-KT--TAP----F----------  173 (421)
Q Consensus       113 k~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL-k~--g~P----Y----------  173 (421)
                      ....||.|+.++-  |...                ...+|+.+..+|+|||.+.|+- +.  ..|    .          
T Consensus       183 ~~~~FD~V~s~~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~  246 (340)
T PLN02244        183 EDGQFDLVWSMESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK  246 (340)
T ss_pred             CCCCccEEEECCchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence            4578999998643  3321                2368888999999999988853 11  111    0          


Q ss_pred             -------Ccc----cHHHHHHhCCcEEEEEeeCCCCCCCCC
Q 014642          174 -------CKW----HIEELARKHSLLRLDCVQFRKEDYPGY  203 (421)
Q Consensus       174 -------~sW----nI~~LAa~aGL~L~~~~~F~~~~YPGY  203 (421)
                             ..|    +++++++++||..++..++....-|-|
T Consensus       247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~  287 (340)
T PLN02244        247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFW  287 (340)
T ss_pred             HHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence                   112    455678888998888766554433433

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.39  E-value=0.36  Score=44.12  Aligned_cols=107  Identities=18%  Similarity=0.315  Sum_probs=65.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||-||-|.=.++..|++..+...+++++-.+  +.+.+   .+++++......+...+...|+.++.    +....
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~  121 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS  121 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence            45799999999999999999887433455555543  22322   23344332111122234446887764    23467


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ||.|+.++=...   ..+           +..+++++..+|+++|.|.+.
T Consensus       122 ~D~I~~~~~l~~---~~~-----------~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        122 FDAVTIAFGLRN---VPD-----------IDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             ccEEEEeccccc---CCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence            999987642111   111           346788899999999987653

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.39  E-value=0.29  Score=45.57  Aligned_cols=127  Identities=18%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||-||-|.=+++..|++. +  .+++++-.+  ....+   .+..++..... .+.+ +..|+..+...   ....
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~iD~s--~~~~~---~a~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~  114 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL-G--ADVTGIDAS--EENIE---VARLHALESGL-KIDY-RQTTAEELAAE---HPGQ  114 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEcCC--HHHHH---HHHHHHHHcCC-ceEE-EecCHHHhhhh---cCCC
Confidence            4678999999988888888875 2  457666544  22222   23334332211 2233 34555554321   2368


Q ss_pred             ccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC----------------------
Q 014642          117 FDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP----------------------  172 (421)
Q Consensus       117 FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P----------------------  172 (421)
                      ||.||.++  .|.+.                ...+++++..+|+++|.+.|+.....+                      
T Consensus       115 fD~Ii~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (233)
T PRK05134        115 FDVVTCMEMLEHVPD----------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTH  178 (233)
T ss_pred             ccEEEEhhHhhccCC----------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccC
Confidence            99999864  33331                135788899999999999988643211                      


Q ss_pred             -----cCcccHHHHHHhCCcEEEEE
Q 014642          173 -----FCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       173 -----Y~sWnI~~LAa~aGL~L~~~  192 (421)
                           ++..++.++.+++||.+++.
T Consensus       179 ~~~~~~~~~~~~~~l~~~Gf~~v~~  203 (233)
T PRK05134        179 DYKKFIKPSELAAWLRQAGLEVQDI  203 (233)
T ss_pred             chhhcCCHHHHHHHHHHCCCeEeee
Confidence                 12235777888888888766

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=95.36  E-value=0.23  Score=45.73  Aligned_cols=130  Identities=18%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++.+||-+|=|.=++|..+++..+.+.+|+|.-.+  .+..+   .+++|++.+. ...+.++ .-|+.++-..   .
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~--~~~~~---~a~~n~~~~g~~~~v~~~-~~d~~~~l~~---~  108 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKD--EKAIN---LTRRNAEKFGVLNNIVLI-KGEAPEILFT---I  108 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHhCCCCCeEEE-EechhhhHhh---c
Confidence            3466799999999999999999887655566665544  33332   3677777654 2345544 3466543211   1


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      ...||+|+-+.   +.   +           -+..++..+..+|+|+|.|.+...+-.  ..=.+....++.|+.....
T Consensus       109 ~~~~D~V~~~~---~~---~-----------~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~~~~~  168 (198)
T PRK00377        109 NEKFDRIFIGG---GS---E-----------KLKEIISASWEIIKKGGRIVIDAILLE--TVNNALSALENIGFNLEIT  168 (198)
T ss_pred             CCCCCEEEECC---Cc---c-----------cHHHHHHHHHHHcCCCcEEEEEeecHH--HHHHHHHHHHHcCCCeEEE
Confidence            25799999864   11   1           135688899999999999987554321  1113444556778744333

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.35  E-value=0.18  Score=50.50  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccCcc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      .+||=+|-|.=.++.+|++.+. ..+++|+-.+ .+.+ +   .++.|++.+.-. .+.++. -|+.+     .+...+|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis-~~al-~---~A~~n~~~~~l~~~i~~~~-~D~~~-----~l~~~~f  202 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDIS-PDAL-A---VAEINIERHGLEDRVTLIE-SDLFA-----ALPGRRY  202 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCC-HHHH-H---HHHHHHHHhCCCCcEEEEE-Cchhh-----hCCCCCc
Confidence            5899999999999999998763 3456665443 2222 2   366776654321 244433 35432     1223579


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIR-----------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~-----------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      |.||.|=|.++..........++           .--.+...+++.|..+|+++|.+.+.+-..+   . .+.++....+
T Consensus       203 DlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~---~-~~~~~~~~~~  278 (307)
T PRK11805        203 DLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR---V-HLEEAYPDVP  278 (307)
T ss_pred             cEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH---H-HHHHHHhhCC
Confidence            99999988877421111011111           0125678899999999999999998765431   1 2555555555


Q ss_pred             cEE
Q 014642          187 LLR  189 (421)
Q Consensus       187 L~L  189 (421)
                      +..
T Consensus       279 ~~~  281 (307)
T PRK11805        279 FTW  281 (307)
T ss_pred             CEE
Confidence            444

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.34  E-value=0.72  Score=44.80  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~L  112 (421)
                      .++.+||=||=|.=.++..|++..+...+|+|.-..  +++.+.   ++++.......   ++. +..-|+.+|.    +
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S--~~ml~~---A~~r~~~~~~~~~~~i~-~~~~d~~~lp----~  141 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS--SEQLAV---AASRQELKAKSCYKNIE-WIEGDATDLP----F  141 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHH---HHHHhhhhhhccCCCeE-EEEcccccCC----C
Confidence            457899999999888999999887544466655433  333332   22222211111   233 3445777663    4


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ....||.|+.+|=.--.   +        +   ...+++.+..+|+|||.+.|.-.
T Consensus       142 ~~~sfD~V~~~~~l~~~---~--------d---~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        142 DDCYFDAITMGYGLRNV---V--------D---RLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCCCEeEEEEecccccC---C--------C---HHHHHHHHHHHcCcCcEEEEEEC
Confidence            56789999988653321   1        1   24678999999999999877643

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.29  E-value=0.086  Score=46.09  Aligned_cols=111  Identities=23%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +++.+||=+|=|.=-++..|++..+++.+  .+..|--+++.+.   +..+++.+.-..+ -++-.|++++...  +. .
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~~---a~~~~~~~~~~ni-~~~~~d~~~l~~~--~~-~   72 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIEY---AKKRAKELGLDNI-EFIQGDIEDLPQE--LE-E   72 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHHH---HHHHHHHTTSTTE-EEEESBTTCGCGC--SS-T
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHHH---hhccccccccccc-ceEEeehhccccc--cC-C
Confidence            45779999999999999999976555555  4556655555543   4444444333323 4455788887654  33 7


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.+.+.--.   .           -...+++.+..+|+++|.+.++...
T Consensus        73 ~~D~I~~~~~l~~~---~-----------~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   73 KFDIIISNGVLHHF---P-----------DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TEEEEEEESTGGGT---S-----------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEEcCchhhc---c-----------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            89999999654221   1           1236677899999999999888766

...

>PRK04266 fibrillarin; Provisional

Probab=95.27  E-value=0.78  Score=44.20  Aligned_cols=136  Identities=13%  Similarity=0.077  Sum_probs=81.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=+|=|.=.++..|++..+ ...|+|-  |..+++.+.   ..++.+.  ..++.++ --|++.......+. 
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~av--D~~~~ml~~---l~~~a~~--~~nv~~i-~~D~~~~~~~~~l~-  139 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAV--EFAPRPMRE---LLEVAEE--RKNIIPI-LADARKPERYAHVV-  139 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEE--ECCHHHHHH---HHHHhhh--cCCcEEE-ECCCCCcchhhhcc-
Confidence            34678999999998889999998875 3345554  644433331   2222222  1355554 34666532212222 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----CcCcc--cHHHHHHhCCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----PFCKW--HIEELARKHSL  187 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----PY~sW--nI~~LAa~aGL  187 (421)
                      ..||.|+-+.+..              ++  ...+++.+..+|+|+|.+.|++.-..     +-..|  +..+..+.+||
T Consensus       140 ~~~D~i~~d~~~p--------------~~--~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF  203 (226)
T PRK04266        140 EKVDVIYQDVAQP--------------NQ--AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGF  203 (226)
T ss_pred             ccCCEEEECCCCh--------------hH--HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCC
Confidence            4599998554421              00  12357788889999999999855321     11111  13367778899


Q ss_pred             EEEEEeeCC
Q 014642          188 LRLDCVQFR  196 (421)
Q Consensus       188 ~L~~~~~F~  196 (421)
                      ..++...+.
T Consensus       204 ~~i~~~~l~  212 (226)
T PRK04266        204 EILEVVDLE  212 (226)
T ss_pred             eEEEEEcCC
Confidence            999887763

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=95.17  E-value=0.22  Score=49.29  Aligned_cols=150  Identities=22%  Similarity=0.230  Sum_probs=106.4

Q ss_pred             eeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEeecccCCcC
Q 014642           30 KWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT--LKKLGASIIHGVDATEMK  107 (421)
Q Consensus        30 K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~--Lr~~Gv~VlhgVDATkL~  107 (421)
                      .|+..-. ..+||=+|=||===++.||+... ...|++--++.  ++   |.-|..|++.  |++ -+.| +.-|...+.
T Consensus        38 ~~~~~~~-~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~--~~---a~~A~~nv~ln~l~~-ri~v-~~~Di~~~~  108 (248)
T COG4123          38 AFAPVPK-KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQE--EA---AEMAQRNVALNPLEE-RIQV-IEADIKEFL  108 (248)
T ss_pred             hhccccc-CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCH--HH---HHHHHHHHHhCcchh-ceeE-ehhhHHHhh
Confidence            4454444 88999999999999999998864 36788887773  23   3357788876  444 2444 456888887


Q ss_pred             cccccccCcccEEEEcCCCCCCCCC--cccHHHHHHhHH--HHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642          108 EHSELSKRKFDRIIFNFPHAGFHGK--EEDDEVIRMHMS--LVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR  183 (421)
Q Consensus       108 ~~~~Lk~~~FDrIIFNFPH~G~~Gk--Ed~~~~I~~nr~--LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa  183 (421)
                      .+..  ..+||.||.|=|+--....  ++..+.+-.|..  .+..+.+.|+++|+++|.+.+-|..   -..=+|.++.+
T Consensus       109 ~~~~--~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~  183 (248)
T COG4123         109 KALV--FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLK  183 (248)
T ss_pred             hccc--ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHH
Confidence            7643  3479999999999875322  333344444432  3789999999999999999998864   34556788888


Q ss_pred             hCCcEEEEEe
Q 014642          184 KHSLLRLDCV  193 (421)
Q Consensus       184 ~aGL~L~~~~  193 (421)
                      ..+|...+..
T Consensus       184 ~~~~~~k~i~  193 (248)
T COG4123         184 SYNLEPKRIQ  193 (248)
T ss_pred             hcCCCceEEE
Confidence            8777766553

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.11  E-value=0.51  Score=42.71  Aligned_cols=104  Identities=14%  Similarity=0.289  Sum_probs=66.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=+|-|.=.++..+++..+...++++...+  +.+.+   .+.+++.  ....+.+ ...|+.++.    +....
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~---~~~~~~~--~~~~i~~-~~~d~~~~~----~~~~~  106 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLE---VAKKKSE--LPLNIEF-IQADAEALP----FEDNS  106 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHH---HHHHHhc--cCCCceE-EecchhcCC----CCCCc
Confidence            56799999999999999999887432355555443  22222   2333433  1123443 347777654    23467


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ||.|+.++-....   .+           +..+++++..+|+++|.+.+.
T Consensus       107 ~D~i~~~~~~~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~  142 (223)
T TIGR01934       107 FDAVTIAFGLRNV---TD-----------IQKALREMYRVLKPGGRLVIL  142 (223)
T ss_pred             EEEEEEeeeeCCc---cc-----------HHHHHHHHHHHcCCCcEEEEE
Confidence            9999987643221   11           346889999999999998764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.08  E-value=0.031  Score=52.45  Aligned_cols=149  Identities=18%  Similarity=0.314  Sum_probs=93.9

Q ss_pred             cceeeeccCCCC-eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc
Q 014642           28 EEKWIMHYSSKH-QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM  106 (421)
Q Consensus        28 ~~K~i~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL  106 (421)
                      ...|-..|.... -+|=||=|+=-|..++|+.+ ...|+|+--..  .....+   +...+....-.++.++ ..||..+
T Consensus         7 ~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~--~~~v~~---a~~~~~~~~l~Nv~~~-~~da~~~   79 (195)
T PF02390_consen    7 PLDWQEIFGNDNPLILEIGCGKGEFLIELAKRN-PDINFIGIEIR--KKRVAK---ALRKAEKRGLKNVRFL-RGDAREL   79 (195)
T ss_dssp             TTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES---HHHHHH---HHHHHHHHTTSSEEEE-ES-CTTH
T ss_pred             ccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecc--hHHHHH---HHHHHHhhcccceEEE-EccHHHH
Confidence            445666676665 56778988888999999887 46788886543  222221   3333333333355554 4599884


Q ss_pred             CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH-hC
Q 014642          107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR-KH  185 (421)
Q Consensus       107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa-~a  185 (421)
                      -.. .+....+|.|..|||-.=.+-+.      .++|-+=..|+.....+|++||+|++.--. .+|-.|-++.+.+ ..
T Consensus        80 l~~-~~~~~~v~~i~i~FPDPWpK~rH------~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-~~y~~~~~~~~~~~~~  151 (195)
T PF02390_consen   80 LRR-LFPPGSVDRIYINFPDPWPKKRH------HKRRLVNPEFLELLARVLKPGGELYFATDV-EEYAEWMLEQFEESHP  151 (195)
T ss_dssp             HHH-HSTTTSEEEEEEES-----SGGG------GGGSTTSHHHHHHHHHHEEEEEEEEEEES--HHHHHHHHHHHHHHST
T ss_pred             Hhh-cccCCchheEEEeCCCCCcccch------hhhhcCCchHHHHHHHHcCCCCEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence            332 23458899999999998653221      123334467888888999999999887765 4699999999999 47


Q ss_pred             CcEEEE
Q 014642          186 SLLRLD  191 (421)
Q Consensus       186 GL~L~~  191 (421)
                      ++....
T Consensus       152 ~f~~~~  157 (195)
T PF02390_consen  152 GFENIE  157 (195)
T ss_dssp             TEEEE-
T ss_pred             CeEEcc
Confidence            888774

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK08317 hypothetical protein; Provisional

Probab=95.07  E-value=0.33  Score=43.98  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=69.7

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~L  112 (421)
                      ...++.+||-+|-|.=.++..+++.+++..+++++..+.. .+.    .+..+   ....+..+- ...|++.+.    +
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~-~~~----~a~~~---~~~~~~~~~~~~~d~~~~~----~   83 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA-MLA----LAKER---AAGLGPNVEFVRGDADGLP----F   83 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH-HHH----HHHHH---hhCCCCceEEEecccccCC----C
Confidence            4556789999999999999999998865567888877532 111    12222   112222332 334666543    3


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ....||.|+.+.-..-.   .        +   ...+++.+..+|+++|.|.+.-.
T Consensus        84 ~~~~~D~v~~~~~~~~~---~--------~---~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHL---E--------D---PARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             CCCCceEEEEechhhcc---C--------C---HHHHHHHHHHHhcCCcEEEEEec
Confidence            45789999987432211   0        1   24578888999999999987653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.00  E-value=1.4  Score=40.86  Aligned_cols=105  Identities=15%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||=+|-|.=.+|+.||+.   +.+|+|.  |...+..+.   ++.++.   ..|+.  .....|+..+.    + 
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~---g~~V~gv--D~S~~~i~~---a~~~~~---~~~~~~v~~~~~d~~~~~----~-   92 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAAN---GFDVTAW--DKNPMSIAN---LERIKA---AENLDNLHTAVVDLNNLT----F-   92 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHC---CCEEEEE--eCCHHHHHH---HHHHHH---HcCCCcceEEecChhhCC----c-
Confidence            45679999999999999999975   2356554  643444332   333332   22322  12224544432    2 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeE-EEEec
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEV-HVSHK  168 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeI-HVTLk  168 (421)
                      ...||.|+.++...-.            +...+..+++.+..+|+|+|.+ .++..
T Consensus        93 ~~~fD~I~~~~~~~~~------------~~~~~~~~l~~i~~~LkpgG~~~~~~~~  136 (197)
T PRK11207         93 DGEYDFILSTVVLMFL------------EAKTIPGLIANMQRCTKPGGYNLIVAAM  136 (197)
T ss_pred             CCCcCEEEEecchhhC------------CHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            3569999988763211            2334678999999999999994 44543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.99  E-value=0.32  Score=45.43  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=+|=|.=.++..|++..+....++|.-.+  +++.+   .++.|++.+.-.++++++ .|+.....    ...
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~~  145 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PLA  145 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----ccC
Confidence            467899999999999999999987543456665444  34433   466777665433455554 36654321    135


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||+|+.+.+-...                    .......|+++|.+.+.+.+
T Consensus       146 ~fD~Ii~~~~~~~~--------------------~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       146 PYDRIYVTAAGPKI--------------------PEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             CCCEEEEcCCcccc--------------------cHHHHHhcCcCcEEEEEEcC
Confidence            89999998653221                    11234579999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.98  E-value=0.49  Score=48.58  Aligned_cols=139  Identities=14%  Similarity=0.083  Sum_probs=86.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||-|.=.+++.|++.++ +.+++++-. |.+.+ +   .++++..   ..++.+ ..-|+..+.    +...
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~-S~~mL-~---~A~~k~~---~~~i~~-i~gD~e~lp----~~~~  177 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQ-SPHQL-A---KAKQKEP---LKECKI-IEGDAEDLP----FPTD  177 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEEC-CHHHH-H---HHHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence            3467999999999889999998774 346766544 23332 2   1333321   224554 334555442    3457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--------------CcCcccHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------PFCKWHIEEL  181 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------PY~sWnI~~L  181 (421)
                      .||.||-+....-.   .+        .   ...|+.+..+|+++|.+.|.-....              ....-++.++
T Consensus       178 sFDvVIs~~~L~~~---~d--------~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~l  243 (340)
T PLN02490        178 YADRYVSAGSIEYW---PD--------P---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEW  243 (340)
T ss_pred             ceeEEEEcChhhhC---CC--------H---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHH
Confidence            89999987543221   11        0   1468999999999999877532110              0112345578


Q ss_pred             HHhCCcEEEEEeeCCCCCCCC
Q 014642          182 ARKHSLLRLDCVQFRKEDYPG  202 (421)
Q Consensus       182 Aa~aGL~L~~~~~F~~~~YPG  202 (421)
                      .+++||..++..+..+..|+|
T Consensus       244 L~~aGF~~V~i~~i~~~~~~~  264 (340)
T PLN02490        244 FTKAGFKDVKLKRIGPKWYRG  264 (340)
T ss_pred             HHHCCCeEEEEEEcChhhccc
Confidence            889999999988877655553

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.93  E-value=0.4  Score=45.81  Aligned_cols=106  Identities=15%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--E-EEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--S-IIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~-VlhgVDATkL~~~~~L  112 (421)
                      +...+||=||=|.=.+|..|++.   +.++++.  |..+++.+   .++.++.   +.|.  . -+..-|+.++...   
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~v--D~s~~~l~---~a~~~~~---~~g~~~~v~~~~~d~~~l~~~---  108 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILC--DLSAEMIQ---RAKQAAE---AKGVSDNMQFIHCAAQDIAQH---  108 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEE--ECCHHHHH---HHHHHHH---hcCCccceEEEEcCHHHHhhh---
Confidence            34579999999999999999985   3466655  54344433   2444443   3332  1 2344566665422   


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ....||.|+.+...--.   ++           ...++..+..+|+|+|.+.|+..+
T Consensus       109 ~~~~fD~V~~~~vl~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        109 LETPVDLILFHAVLEWV---AD-----------PKSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             cCCCCCEEEehhHHHhh---CC-----------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence            24689999987553211   11           125678888999999999887544

>PRK00811 spermidine synthase; Provisional

Probab=94.78  E-value=0.28  Score=48.33  Aligned_cols=109  Identities=18%  Similarity=0.280  Sum_probs=70.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeecccCCcCcccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-----KLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-----~~Gv~VlhgVDATkL~~~~~  111 (421)
                      ..++||.+|=|+-+.+..++++.+ ..+|++--+|.  ++.+.   +++++..+.     .-.++|+ --||.+.-..  
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~--~vv~~---a~~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~--  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE--RVVEV---CRKYLPEIAGGAYDDPRVELV-IGDGIKFVAE--  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH--HHHHH---HHHHhHHhccccccCCceEEE-ECchHHHHhh--
Confidence            457999999999999999987643 45677777774  23321   344444432     3345554 4466553221  


Q ss_pred             cccCcccEEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 LSKRKFDRIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                       ..++||.||-+.+. .+. .          ....-..||+.++++|+++|.+.+.
T Consensus       147 -~~~~yDvIi~D~~dp~~~-~----------~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        147 -TENSFDVIIVDSTDPVGP-A----------EGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCCcccEEEECCCCCCCc-h----------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             24689999999643 221 1          1123478999999999999986653

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.71  E-value=0.36  Score=50.03  Aligned_cols=123  Identities=20%  Similarity=0.211  Sum_probs=84.5

Q ss_pred             EecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEEEc
Q 014642           44 VGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRIIFN  123 (421)
Q Consensus        44 VGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFN  123 (421)
                      +|=|.|=--++|     -+.+++++  |=.+.+.+   .+..|++...-.+..|+-.-||++|.    |...+||-|+-+
T Consensus       206 cGTGgiLiEagl-----~G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~~~vdaIatD  271 (347)
T COG1041         206 CGTGGILIEAGL-----MGARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRDNSVDAIATD  271 (347)
T ss_pred             CCccHHHHhhhh-----cCceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCCCccceEEec
Confidence            455554434333     25678887  43344444   48899999886677777666999997    556689999999


Q ss_pred             CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          124 FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       124 FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      =|=--....+.     ..--+|+..||.+++++|+++|.+.+...    .   +...-+.+.|+.+...
T Consensus       272 PPYGrst~~~~-----~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~---~~~~~~~~~~f~v~~~  328 (347)
T COG1041         272 PPYGRSTKIKG-----EGLDELYEEALESASEVLKPGGRIVFAAP----R---DPRHELEELGFKVLGR  328 (347)
T ss_pred             CCCCccccccc-----ccHHHHHHHHHHHHHHHhhcCcEEEEecC----C---cchhhHhhcCceEEEE
Confidence            88533211110     01358999999999999999999888776    2   2234677888888876

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.60  E-value=0.38  Score=47.12  Aligned_cols=136  Identities=19%  Similarity=0.231  Sum_probs=82.2

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccccCcc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      .+||=+|=|.=.++++|+..+. ...++|+-.. .+.+ +   -++.|++.+.-.+ +.++. -|+.+     .+....|
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis-~~al-~---~a~~n~~~~~~~~~v~~~~-~d~~~-----~~~~~~f  183 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDIS-PDAL-A---VAEENAEKNQLEHRVEFIQ-SNLFE-----PLAGQKI  183 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECC-HHHH-H---HHHHHHHHcCCCCcEEEEE-Cchhc-----cCcCCCc
Confidence            5899999999999999998763 3467666443 2222 2   3566766553222 44333 34432     1223479


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHH------------hHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH-h
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRM------------HMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR-K  184 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~------------nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa-~  184 (421)
                      |.||.|=|-+........ ..+..            ...++..++..|..+|+++|.+.+.+-..+.   =.+.++.. .
T Consensus       184 DlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~---~~~~~~~~~~  259 (284)
T TIGR00536       184 DIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ---KSLKELLRIK  259 (284)
T ss_pred             cEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHhc
Confidence            999999988864211100 01111            1346788999999999999999888754321   13445444 3


Q ss_pred             CCcEEE
Q 014642          185 HSLLRL  190 (421)
Q Consensus       185 aGL~L~  190 (421)
                      .|+.-+
T Consensus       260 ~~~~~~  265 (284)
T TIGR00536       260 FTWYDV  265 (284)
T ss_pred             CCCcee
Confidence            565433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.33  E-value=0.76  Score=42.23  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=62.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-EEE-eecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-SII-HGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~Vl-hgVDATkL~~~~~Lk~  114 (421)
                      ...+||=+|-|.=+++..|++..   ..++++-.+. +.+ +   .+..++   ...+. .+- ...|+.++...   ..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~-~~~-~---~a~~~~---~~~~~~~~~~~~~d~~~~~~~---~~  110 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASE-ENI-E---VAKLHA---KKDPLLKIEYRCTSVEDLAEK---GA  110 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCH-HHH-H---HHHHHH---HHcCCCceEEEeCCHHHhhcC---CC
Confidence            36799999999888888888753   2466665532 222 1   122232   23333 222 23455444322   13


Q ss_pred             CcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          115 RKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       115 ~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ..||.|+.++-  |++.                ...+++++..+|+++|.|.++..+
T Consensus       111 ~~~D~i~~~~~l~~~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       111 KSFDVVTCMEVLEHVPD----------------PQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             CCccEEEehhHHHhCCC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            68999998642  2221                247889999999999999987643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.04  E-value=0.76  Score=47.10  Aligned_cols=105  Identities=26%  Similarity=0.302  Sum_probs=71.5

Q ss_pred             HHHHHhCCCE--EEeecccCCcCcccccccCcccEEEEcCCCCCCCCC--------cccHHHHHHhHHHHHHHHHhhHhc
Q 014642           87 LDTLKKLGAS--IIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGK--------EEDDEVIRMHMSLVEGFFRNASGM  156 (421)
Q Consensus        87 l~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~Gk--------Ed~~~~I~~nr~LL~~FF~SA~~l  156 (421)
                      .+.|+++|+.  ++...|+..+..... ...+||+|+-+=|+.|.+-.        ......|.....|=..++.+|.++
T Consensus       199 ~~nl~RlG~~nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~  277 (355)
T COG0144         199 RENLKRLGVRNVIVVNKDARRLAELLP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL  277 (355)
T ss_pred             HHHHHHcCCCceEEEeccccccccccc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3445666665  778888887755422 23479999999999995211        113455666677778889999999


Q ss_pred             cCCCCeEEEEecCCCCcCc-ccHHH-HHHhCCcEEEEE
Q 014642          157 LRPRGEVHVSHKTTAPFCK-WHIEE-LARKHSLLRLDC  192 (421)
Q Consensus       157 L~~~GeIHVTLk~g~PY~s-WnI~~-LAa~aGL~L~~~  192 (421)
                      |++||.+.-+.|+-.|-.. =.|.. |.+..++.+...
T Consensus       278 lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~  315 (355)
T COG0144         278 LKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV  315 (355)
T ss_pred             cCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence            9999999999999877533 33434 344446655544

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=93.78  E-value=0.25  Score=48.07  Aligned_cols=139  Identities=19%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             cceeeeccCCCC--eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-E-EEeeccc
Q 014642           28 EEKWIMHYSSKH--QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-S-IIHGVDA  103 (421)
Q Consensus        28 ~~K~i~~Yss~~--rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-~-VlhgVDA  103 (421)
                      ..+|-.-|....  -+|=||=|.=-|-..+|++. ...|.++--.-..        ....-++.+++.|+ . -+...||
T Consensus        37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~--------~v~~~l~k~~~~~l~Nlri~~~DA  107 (227)
T COG0220          37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVP--------GVAKALKKIKELGLKNLRLLCGDA  107 (227)
T ss_pred             cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehH--------HHHHHHHHHHHcCCCcEEEEcCCH
Confidence            466777777764  67889999999999999987 4668888544321        12234666777777 3 5678999


Q ss_pred             CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642          104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR  183 (421)
Q Consensus       104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa  183 (421)
                      +.+-.+. ...+..|+|..|||-.=.+-+.      .++|-+=..|++-...+|+++|.||+.--.- .|-.|.+.+...
T Consensus       108 ~~~l~~~-~~~~sl~~I~i~FPDPWpKkRH------~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~-~y~e~~~~~~~~  179 (227)
T COG0220         108 VEVLDYL-IPDGSLDKIYINFPDPWPKKRH------HKRRLTQPEFLKLYARKLKPGGVLHFATDNE-EYFEWMMLEVLE  179 (227)
T ss_pred             HHHHHhc-CCCCCeeEEEEECCCCCCCccc------cccccCCHHHHHHHHHHccCCCEEEEEecCH-HHHHHHHHHHHh
Confidence            9987764 3456899999999988764322      1234445678888899999999999987653 577885555433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=93.73  E-value=1.3  Score=43.18  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=65.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||-|.=..+..|++.+  +..+++.-.. .+.+ +   .+.++...  ...+.+ ...|++++.    +..
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s-~~~~-~---~a~~~~~~--~~~i~~-~~~D~~~~~----~~~  115 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDIC-EKMV-N---IAKLRNSD--KNKIEF-EANDILKKD----FPE  115 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECC-HHHH-H---HHHHHcCc--CCceEE-EECCcccCC----CCC
Confidence            4567899999998877788888765  3466666553 2222 1   12222221  112333 345776542    345


Q ss_pred             CcccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          115 RKFDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ..||.|+.+.  -|.+.   +        +   ...+|+.+..+|+|+|.+.|+-
T Consensus       116 ~~FD~V~s~~~l~h~~~---~--------d---~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSY---A--------D---KKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CCeEEEEEhhhHHhCCH---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence            7899999863  56542   1        1   2478889999999999999875

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=93.66  E-value=0.55  Score=47.84  Aligned_cols=133  Identities=24%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ..+||=||=|.==-+..|++..+   ..-.|-.| +...+.    -++.|+..=.=.+..|.++-.....      .. +
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v------~~-k  224 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV------EG-K  224 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc------cc-c
Confidence            34778888888777777777653   22333333 222222    2455544322223345555444443      23 8


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc-----c-cHHHHHHhCCcEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK-----W-HIEELARKHSLLRL  190 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-----W-nI~~LAa~aGL~L~  190 (421)
                      ||.||-|=|.--+  +       ..-..+...+|+.|.+.|+++|++.|--....||..     . +++.+|+..||.+.
T Consensus       225 fd~IisNPPfh~G--~-------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~Vl  295 (300)
T COG2813         225 FDLIISNPPFHAG--K-------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFKVL  295 (300)
T ss_pred             ccEEEeCCCccCC--c-------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEEEE
Confidence            9999999996643  2       124566789999999999999999999886666632     2 47778888888877


Q ss_pred             EEe
Q 014642          191 DCV  193 (421)
Q Consensus       191 ~~~  193 (421)
                      +..
T Consensus       296 ~a~  298 (300)
T COG2813         296 RAK  298 (300)
T ss_pred             EEe
Confidence            654

>PTZ00146 fibrillarin; Provisional

Probab=93.64  E-value=3.1  Score=42.24  Aligned_cols=136  Identities=16%  Similarity=0.153  Sum_probs=83.6

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~  111 (421)
                      .+..+.++||=+|=|.=+|+..|++..+..-.|+|--+.  +.+.+.      -++.. ++.++..+.+ |++.......
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~d------Ll~~ak~r~NI~~I~~-Da~~p~~y~~  198 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGRD------LTNMAKKRPNIVPIIE-DARYPQKYRM  198 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHHH------HHHHhhhcCCCEEEEC-CccChhhhhc
Confidence            355678899999999999999999988654467776443  221111      01111 1245655543 7765322111


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-----CC----cCcccHHHHH
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-----AP----FCKWHIEELA  182 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-----~P----Y~sWnI~~LA  182 (421)
                      + ...||+|+-+....      |+.          ..+..+|..+|+++|.+.|..+-.     .|    +. +.+ +..
T Consensus       199 ~-~~~vDvV~~Dva~p------dq~----------~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~~L  259 (293)
T PTZ00146        199 L-VPMVDVIFADVAQP------DQA----------RIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-QKL  259 (293)
T ss_pred             c-cCCCCEEEEeCCCc------chH----------HHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-HHH
Confidence            1 24699999988521      111          123344888999999999976532     12    22 445 556


Q ss_pred             HhCCcEEEEEeeCC
Q 014642          183 RKHSLLRLDCVQFR  196 (421)
Q Consensus       183 a~aGL~L~~~~~F~  196 (421)
                      +++||..++.+.+.
T Consensus       260 ~~~GF~~~e~v~L~  273 (293)
T PTZ00146        260 KKEGLKPKEQLTLE  273 (293)
T ss_pred             HHcCCceEEEEecC
Confidence            88899999887763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.38  E-value=0.3  Score=52.20  Aligned_cols=135  Identities=10%  Similarity=0.102  Sum_probs=94.1

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..-+|=||=|+=.|.+.+|+.+ +..|+++--....        .....+...++.   ++.++.+ |+..+...  +..
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~~-~~~~~~~~--~~~  415 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFPN-NLDLILND--LPN  415 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEcC-CHHHHHHh--cCc
Confidence            4467889999999999999988 4678998755421        122223333443   3455443 77766544  456


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLD  191 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~  191 (421)
                      ..+|.|..|||-.=.|-+.      .++|-+=..|+.....+|++||+||+.--. .+|-.|-++.+.+..++.+..
T Consensus       416 ~sv~~i~i~FPDPWpKkrh------~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~-~~y~~~~~~~~~~~~~f~~~~  485 (506)
T PRK01544        416 NSLDGIYILFPDPWIKNKQ------KKKRIFNKERLKILQDKLKDNGNLVFASDI-ENYFYEAIELIQQNGNFEIIN  485 (506)
T ss_pred             ccccEEEEECCCCCCCCCC------ccccccCHHHHHHHHHhcCCCCEEEEEcCC-HHHHHHHHHHHHhCCCeEecc
Confidence            7899999999998764332      123444467888888899999999987655 469999888887777787653

>PLN02366 spermidine synthase

Probab=93.24  E-value=0.42  Score=48.22  Aligned_cols=112  Identities=22%  Similarity=0.324  Sum_probs=70.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhh-hhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKF-KEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY-~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ....+||+||=|+-+.+..|+++. ...+|++--+|.. -++.++| +..  +. .+..-.++|+.+ ||...-+.  ..
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~--~~-~~~dpRv~vi~~-Da~~~l~~--~~  162 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDL--AV-GFDDPRVNLHIG-DGVEFLKN--AP  162 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhh--cc-ccCCCceEEEEC-hHHHHHhh--cc
Confidence            345799999999999999998763 3456877777742 2333332 211  11 244445666653 55443211  12


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      .++||.||-+.+...+  .        .....-..||+.+..+|+|+|.+.
T Consensus       163 ~~~yDvIi~D~~dp~~--~--------~~~L~t~ef~~~~~~~L~pgGvlv  203 (308)
T PLN02366        163 EGTYDAIIVDSSDPVG--P--------AQELFEKPFFESVARALRPGGVVC  203 (308)
T ss_pred             CCCCCEEEEcCCCCCC--c--------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence            4679999998765432  1        112234689999999999999873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.22  E-value=1.3  Score=41.25  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ..+++||=||=|.=.++..|++..+....++  +.|..+++.+   .+++|+..+.-.+..-+..-|+.+.-.    ...
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~--~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~  141 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVY--TVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGLE----KHA  141 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEE--EEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCCc----cCC
Confidence            3567999999999999999998875333454  4554444443   366676654322212234456655321    236


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .||+|+.+..-.-          +          -......|+++|.+.+.+.++
T Consensus       142 ~fD~Ii~~~~~~~----------~----------~~~l~~~L~~gG~lvi~~~~~  176 (205)
T PRK13944        142 PFDAIIVTAAAST----------I----------PSALVRQLKDGGVLVIPVEEG  176 (205)
T ss_pred             CccEEEEccCcch----------h----------hHHHHHhcCcCcEEEEEEcCC
Confidence            8999999865211          1          112446899999999987553

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=93.16  E-value=1.4  Score=47.06  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccccC
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~~  115 (421)
                      +.+||=++=|==+=|..||..++....|+|.-.+.     .+.....+|++.   .|+.  ++..-|++++....   ..
T Consensus       114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~-----~R~~~L~~nl~r---~G~~nv~v~~~D~~~~~~~~---~~  182 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA-----SRVKVLHANISR---CGVSNVALTHFDGRVFGAAL---PE  182 (470)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH-----HHHHHHHHHHHH---cCCCeEEEEeCchhhhhhhc---hh
Confidence            34554444433344455555554334577655542     222234556555   4543  45667888876542   35


Q ss_pred             cccEEEEcCCCCCCCC---Cc------ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhC
Q 014642          116 KFDRIIFNFPHAGFHG---KE------EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKH  185 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G---kE------d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~a  185 (421)
                      .||+|+-+=|+.|. |   +.      .....+.....|=...+.+|.++|+|||.+.=+-|+=.|- |.-+|..+.++.
T Consensus       183 ~fD~ILvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~  261 (470)
T PRK11933        183 TFDAILLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY  261 (470)
T ss_pred             hcCeEEEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence            69999999999994 3   11      1234555666677888999999999999999898987664 666777765554

>PRK06922 hypothetical protein; Provisional

Probab=93.15  E-value=0.56  Score=52.38  Aligned_cols=118  Identities=19%  Similarity=0.349  Sum_probs=74.2

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +..+.++.+||=||=|.=.++..|++.+. +.+++|  .|-...+.+.   ++.++... ...+.++.+ |+.++...  
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtG--IDIS~~MLe~---Ararl~~~-g~~ie~I~g-Da~dLp~~--  482 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYG--IDISENVIDT---LKKKKQNE-GRSWNVIKG-DAINLSSS--  482 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEE--EECCHHHHHH---HHHHhhhc-CCCeEEEEc-chHhCccc--
Confidence            45666788999999998888888988763 445655  4533333332   33333221 123444444 77776432  


Q ss_pred             cccCcccEEEEcCCC------CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 LSKRKFDRIIFNFPH------AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH------~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      +....||.|++|++-      +...+.       ..+..-+..+++++..+|+|||.+.|.
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~-------~f~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGK-------KFNHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccc-------cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            345789999999652      211111       112345678999999999999999886

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=92.91  E-value=0.86  Score=43.60  Aligned_cols=108  Identities=14%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+.+||=||=|.=..+..|++.+.. .+...|..|.-.++.+   .++.++...... .+.+ +.-|+..+.    +  .
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~-~~~~v~gvD~S~~ml~---~A~~~~~~~~~~~~v~~-~~~d~~~~~----~--~  124 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHH-DNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDV-IEGDIRDIA----I--E  124 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEE-EeCChhhCC----C--C
Confidence            5678999988877777778875421 1345566775444444   255555443222 3443 455666542    1  3


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .+|.||.|+..--.            +..-...+++.+..+|+|||.+.++-
T Consensus       125 ~~D~vv~~~~l~~l------------~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        125 NASMVVLNFTLQFL------------EPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CCCEEehhhHHHhC------------CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            48999988763221            01113477888899999999998874

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=92.89  E-value=3  Score=40.96  Aligned_cols=106  Identities=16%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~L  112 (421)
                      .+++.++||=||=|.=+++.++++++.   ++.+|.+|..+ +.+   .++.|++...-. .++++ .-|+-+..    +
T Consensus       146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~-~~~---~a~~~~~~~gl~~rv~~~-~~d~~~~~----~  213 (306)
T TIGR02716       146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPG-AID---LVNENAAEKGVADRMRGI-AVDIYKES----Y  213 (306)
T ss_pred             CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHH-HHH---HHHHHHHhCCccceEEEE-ecCccCCC----C
Confidence            367778999999999999999999873   34566777643 332   245555443211 13333 33554321    1


Q ss_pred             ccCcccEEEEc-CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 SKRKFDRIIFN-FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 k~~~FDrIIFN-FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                        ..+|.|++. .-|.-             +.......|+.+.+.|+|+|.+.|.
T Consensus       214 --~~~D~v~~~~~lh~~-------------~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       214 --PEADAVLFCRILYSA-------------NEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             --CCCCEEEeEhhhhcC-------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence              236987654 34432             1223346688899999999999887

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=92.66  E-value=0.18  Score=48.12  Aligned_cols=101  Identities=25%  Similarity=0.361  Sum_probs=57.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++..||-.-=|==.||+.+|+. +.+..|+|--.....     |.-...|++.=+=.+....+.-||.++..     .
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a-----~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-----~  167 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDA-----VEYLKENIRLNKVENRIEVINGDAREFLP-----E  167 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHH-----HHHHHHHHHHTT-TTTEEEEES-GGG--------T
T ss_pred             CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHH-----HHHHHHHHHHcCCCCeEEEEcCCHHHhcC-----c
Confidence            455677766544444555666664 346679988776322     11123343322222445677889988754     5


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ..|||||.|.|+...                  .|+..|..+++++|-||
T Consensus       168 ~~~drvim~lp~~~~------------------~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  168 GKFDRVIMNLPESSL------------------EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             T-EEEEEE--TSSGG------------------GGHHHHHHHEEEEEEEE
T ss_pred             cccCEEEECChHHHH------------------HHHHHHHHHhcCCcEEE
Confidence            789999999999873                  68888888999988887

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=92.43  E-value=1.1  Score=45.96  Aligned_cols=121  Identities=23%  Similarity=0.326  Sum_probs=80.2

Q ss_pred             eEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CEEEeec-ccCCcCcccccccCc
Q 014642           40 QILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLG-ASIIHGV-DATEMKEHSELSKRK  116 (421)
Q Consensus        40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgV-DATkL~~~~~Lk~~~  116 (421)
                      .||=||=|.=--|++|+..++   +.++|.-| |...+.    -|.+|.+.|+-.| +.|+|.+ --....+++ +..++
T Consensus       151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~~  222 (328)
T KOG2904|consen  151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEGK  222 (328)
T ss_pred             eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccCc
Confidence            799999998888888887775   44455555 332222    4788999999876 5566542 222233343 45688


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .|.||-|=|-+-....++-.-.|+.+            -..+.+|+.-|..+|+++|.+.+.+.
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            99999999988631111111112211            24567899999999999999999987

>TIGR00740 methyltransferase, putative

Probab=92.43  E-value=1.6  Score=41.22  Aligned_cols=107  Identities=13%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .++.+||=||=|.=.++..|++.+. .+.++  |.+|-.+++.+   .++.+++.... ..++++ .-|+.++.    + 
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v--~gvD~s~~ml~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~-  120 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKI--IGIDNSQPMVE---RCRQHIAAYHSEIPVEIL-CNDIRHVE----I-  120 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeE--EEEeCCHHHHH---HHHHHHHhcCCCCCeEEE-ECChhhCC----C-
Confidence            4567999999999999999998763 23344  45554334433   25555544321 134544 34777653    1 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                       ..+|.|+.++...-.            +..-...+++.+..+|+|+|.+.++
T Consensus       121 -~~~d~v~~~~~l~~~------------~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       121 -KNASMVILNFTLQFL------------PPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             -CCCCEEeeecchhhC------------CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence             348999988752211            0001236788889999999999887

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PHA03411 putative methyltransferase; Provisional

Probab=92.33  E-value=1.8  Score=43.77  Aligned_cols=134  Identities=17%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=+|=|.=-|++.+++..+ +.+|++.-.+.  .+.+.   ++.|+     .++.+ ..-|+..+.     ...+|
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp--~al~~---Ar~n~-----~~v~~-v~~D~~e~~-----~~~kF  127 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNP--EFARI---GKRLL-----PEAEW-ITSDVFEFE-----SNEKF  127 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCH--HHHHH---HHHhC-----cCCEE-EECchhhhc-----ccCCC
Confidence            35898886666666667766542 35777775553  23221   23332     14544 345665542     23679


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHh------HHH-HHHHHHhhHhccCCCCeEEEEecCCCCc-----CcccHHHHHHhC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMH------MSL-VEGFFRNASGMLRPRGEVHVSHKTTAPF-----CKWHIEELARKH  185 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~n------r~L-L~~FF~SA~~lL~~~GeIHVTLk~g~PY-----~sWnI~~LAa~a  185 (421)
                      |.||.|-|.... ..++.....+..      ..| +..|++....+|+|+|.+ ...-.+.|+     +.=...++-+++
T Consensus       128 DlIIsNPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~-~~~yss~~~y~~sl~~~~y~~~l~~~  205 (279)
T PHA03411        128 DVVISNPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA-GFAYSGRPYYDGTMKSNKYLKWSKQT  205 (279)
T ss_pred             cEEEEcCCcccc-CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceE-EEEEeccccccccCCHHHHHHHHHhc
Confidence            999999999874 233332222221      333 689999999999999954 444667674     223444577888


Q ss_pred             CcEEE
Q 014642          186 SLLRL  190 (421)
Q Consensus       186 GL~L~  190 (421)
                      ||++.
T Consensus       206 g~~~~  210 (279)
T PHA03411        206 GLVTY  210 (279)
T ss_pred             CcEec
Confidence            88864

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=92.23  E-value=1.2  Score=44.15  Aligned_cols=132  Identities=22%  Similarity=0.354  Sum_probs=67.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-HHhCCCEE-EeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT-LKKLGASI-IHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~-Lr~~Gv~V-lhgVDATkL~~~~~Lk~  114 (421)
                      .+++||+|||+|+ .|+|+|-. +.+.+|+.=-.|  +.+.+ |      |+. -++.|..| .+--|..+--  +.--.
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiD--eRll~-f------I~~~a~~~gl~i~~~~~DlR~~L--P~~~~  110 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALT-GLPKRITVVDID--ERLLD-F------INRVAEEEGLPIEAVHYDLRDPL--PEELR  110 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S---HHHHH-H------HHHHHHHHT--EEEE---TTS-----TTTS
T ss_pred             cCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcC--HHHHH-H------HHHHHHHcCCceEEEEecccccC--CHHHh
Confidence            3679999999997 35555532 335677655555  33332 1      221 22334431 2222333210  11114


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCC-eEEEEecCCCC-cCcc-cHHHHHHhCCcEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRG-EVHVSHKTTAP-FCKW-HIEELARKHSLLRLD  191 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~G-eIHVTLk~g~P-Y~sW-nI~~LAa~aGL~L~~  191 (421)
                      ++||.++-+=|-+.- |              +.-|..-+.+.|+..| .+.+.+...++ ...| ++.++..+.||.+.+
T Consensus       111 ~~fD~f~TDPPyT~~-G--------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d  175 (243)
T PF01861_consen  111 GKFDVFFTDPPYTPE-G--------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITD  175 (243)
T ss_dssp             S-BSEEEE---SSHH-H--------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred             cCCCEEEeCCCCCHH-H--------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence            889999999998862 2              4578888989998655 66666666543 4667 788888899999998


Q ss_pred             Ee-eCC
Q 014642          192 CV-QFR  196 (421)
Q Consensus       192 ~~-~F~  196 (421)
                      .. .|.
T Consensus       176 ii~~Fn  181 (243)
T PF01861_consen  176 IIPDFN  181 (243)
T ss_dssp             EEEEEE
T ss_pred             HHhhhc
Confidence            74 344

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=92.16  E-value=1.2  Score=45.99  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=||=|.=.++..|++.++  ..|++..+.. +.+.    .+..+++   ..++.+. -.|+..+       ..
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~-~~l~----~A~~~~~---~l~v~~~-~~D~~~l-------~~  227 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISA-EQQK----LAQERCA---GLPVEIR-LQDYRDL-------NG  227 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCH-HHHH----HHHHHhc---cCeEEEE-ECchhhc-------CC
Confidence            4678999999999999999998764  4677765542 2221    2444442   2233332 2354433       35


Q ss_pred             cccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .||.|+-+  |-|+|.   +        +   +..+|+.+..+|+|+|.+.|..
T Consensus       228 ~fD~Ivs~~~~ehvg~---~--------~---~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        228 QFDRIVSVGMFEHVGP---K--------N---YRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CCCEEEEeCchhhCCh---H--------H---HHHHHHHHHHHcCCCcEEEEEE
Confidence            79999865  456652   1        1   3478999999999999988864

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=92.05  E-value=0.32  Score=39.67  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=58.2

Q ss_pred             EEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEE
Q 014642           41 ILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRI  120 (421)
Q Consensus        41 ILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrI  120 (421)
                      ||=+|=|+-.....|++.+..+.+...+..|--+++.+.   ++++..+ ....++. +--|++++..    ...+||.|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~---~~~~~~~-~~~~~~~-~~~D~~~l~~----~~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL---AKKRFSE-DGPKVRF-VQADARDLPF----SDGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH---HHHHSHH-TTTTSEE-EESCTTCHHH----HSSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH---HHHhchh-cCCceEE-EECCHhHCcc----cCCCeeEE
Confidence            567888998999999988722223455556633333321   3333333 2224543 6778877643    35699999


Q ss_pred             EEc---CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCC
Q 014642          121 IFN---FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRG  161 (421)
Q Consensus       121 IFN---FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~G  161 (421)
                      ++.   +.|.              .++-+..+|+++.++|+|+|
T Consensus        72 ~~~~~~~~~~--------------~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHL--------------SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGS--------------SHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCC--------------CHHHHHHHHHHHHHHhCCCC
Confidence            994   4453              24446788889999999887

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=91.74  E-value=1.7  Score=41.39  Aligned_cols=100  Identities=21%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||=|.=.++..|++.+. +..+++  .|.-+.+.+.   +       ++.++.++. .|+..+.     ...
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~g--vD~s~~~~~~---a-------~~~~~~~~~-~d~~~~~-----~~~   88 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEA--LDSSPEMVAA---A-------RERGVDART-GDVRDWK-----PKP   88 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEE--EECCHHHHHH---H-------HhcCCcEEE-cChhhCC-----CCC
Confidence            3567999998888888889988763 345654  4533333321   1       233565543 5766552     235


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .||.|+.|+..-=.   .+       .    ..+++.+..+|+|||.+.++..
T Consensus        89 ~fD~v~~~~~l~~~---~d-------~----~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         89 DTDVVVSNAALQWV---PE-------H----ADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             CceEEEEehhhhhC---CC-------H----HHHHHHHHHhCCCCcEEEEEcC
Confidence            79999999864321   11       1    3567778889999999999854

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=91.72  E-value=2.2  Score=44.46  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=..+..|++.++  .++++.-.. .+.+.    .|..|..   ..+..|- ...|+..+.    +..
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS-~~~l~----~A~~~~~---~~~~~v~~~~~d~~~~~----~~~  330 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLS-VNMIS----FALERAI---GRKCSVEFEVADCTKKT----YPD  330 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECC-HHHHH----HHHHHhh---cCCCceEEEEcCcccCC----CCC
Confidence            5678999999999889999998763  467666653 33332    2444443   2222232 345666542    334


Q ss_pred             CcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          115 RKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ..||.|+.+  +-|+..                ...+|+.+..+|+|+|.+.|+-
T Consensus       331 ~~fD~I~s~~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        331 NSFDVIYSRDTILHIQD----------------KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             CCEEEEEECCcccccCC----------------HHHHHHHHHHHcCCCeEEEEEE
Confidence            689999986  555541                1367888999999999998874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=91.68  E-value=1.9  Score=39.85  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~~~  116 (421)
                      ..+||=+|-|.=.+|..||+.   +..|+|.  |-.+++.++   +..+.   +..|+.|. ...|+..+    .+ ...
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~i--D~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~----~~-~~~   94 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAW--DHNPASIAS---VLDMK---ARENLPLRTDAYDINAA----AL-NED   94 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC---CCeEEEE--ECCHHHHHH---HHHHH---HHhCCCceeEeccchhc----cc-cCC
Confidence            469999999999999999975   2356665  533334432   22222   23344321 12343322    12 246


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEe
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSH  167 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTL  167 (421)
                      ||.|+.+++..-.            +...+..+++++..+|+|+|. +.++.
T Consensus        95 fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477        95 YDFIFSTVVFMFL------------QAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             CCEEEEecccccC------------CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            9999988764321            223456789999999999998 44443

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=91.62  E-value=2.1  Score=40.52  Aligned_cols=103  Identities=17%  Similarity=0.210  Sum_probs=66.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||-|+=.++..|++.++ +.++++.-..  +++.+.   +..++     .++.+ ...|+..+.     ...
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~i~~---a~~~~-----~~~~~-~~~d~~~~~-----~~~   92 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSS--PAMLAE---ARSRL-----PDCQF-VEADIASWQ-----PPQ   92 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECC--HHHHHH---HHHhC-----CCCeE-EECchhccC-----CCC
Confidence            4567999999999999999998863 4467766544  333321   22222     13333 345666542     235


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.|+..--.   .|           ...+|+.+..+|+++|.+.++..+
T Consensus        93 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         93 ALDLIFANASLQWL---PD-----------HLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             CccEEEEccChhhC---CC-----------HHHHHHHHHHhcCCCcEEEEECCC
Confidence            89999999764221   11           135778888899999999998644

>TIGR00452 methyltransferase, putative

Probab=91.28  E-value=5.8  Score=40.31  Aligned_cols=143  Identities=16%  Similarity=0.185  Sum_probs=81.2

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      +++||=||=|+=-++..++.. | +..+  +.+|.-..+...+..++.   .+...+-..+...|+..|..     ...|
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~-g-~~~v--~GiDpS~~ml~q~~~~~~---~~~~~~~v~~~~~~ie~lp~-----~~~F  189 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGH-G-AKSL--VGIDPTVLFLCQFEAVRK---LLDNDKRAILEPLGIEQLHE-----LYAF  189 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHc-C-CCEE--EEEcCCHHHHHHHHHHHH---HhccCCCeEEEECCHHHCCC-----CCCc
Confidence            579999999998888888765 2 2233  566743434332221111   11212222233355555542     2379


Q ss_pred             cEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--CCC------C---c----Ccc----
Q 014642          118 DRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--TTA------P---F----CKW----  176 (421)
Q Consensus       118 DrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~------P---Y----~sW----  176 (421)
                      |.|+.+.  -|...                ...+++.+..+|++||++.|+..  ++.      |   |    +.|    
T Consensus       190 D~V~s~gvL~H~~d----------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS  253 (314)
T TIGR00452       190 DTVFSMGVLYHRKS----------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPS  253 (314)
T ss_pred             CEEEEcchhhccCC----------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCC
Confidence            9999873  44321                24688999999999999988632  221      1   2    223    


Q ss_pred             --cHHHHHHhCCcEEEEEeeCCCCCCCCCccccCCC
Q 014642          177 --HIEELARKHSLLRLDCVQFRKEDYPGYSNKKGAG  210 (421)
Q Consensus       177 --nI~~LAa~aGL~L~~~~~F~~~~YPGY~hKRt~G  210 (421)
                        .++.+.+++||..++.+.-..  .-.++.++|..
T Consensus       254 ~~~L~~~L~~aGF~~V~i~~~~~--tt~~eqr~t~w  287 (314)
T TIGR00452       254 VSALKNWLEKVGFENFRILDVLK--TTPEEQRKTDW  287 (314)
T ss_pred             HHHHHHHHHHCCCeEEEEEeccC--CCHHHhhhhhh
Confidence              234566778888887654332  22235555543

Known examples to date are restricted to the proteobacteria.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=91.24  E-value=1.7  Score=40.06  Aligned_cols=111  Identities=24%  Similarity=0.259  Sum_probs=67.4

Q ss_pred             EEecCChhHHHHHHHhhCCC------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           43 LVGEGDFSFSFALSQKFGSA------SNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        43 LVGEGDFSFSlSLa~~~gs~------~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ..|-|.+---.++......+      ..+++.-.|  .+..+   .+..|++...-.+..-+...|+++|.    +....
T Consensus        36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~  106 (179)
T PF01170_consen   36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGS  106 (179)
T ss_dssp             T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSB
T ss_pred             CCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCC
Confidence            36888888777776443211      124444444  33332   36778765443334456667999997    34568


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      +|.||.|=|.--..+      .-...++|...|++.++++|++ ..+.|+..+
T Consensus       107 ~d~IvtnPPyG~r~~------~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~  152 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLG------SKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN  152 (179)
T ss_dssp             SCEEEEE--STTSHC------HHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred             CCEEEECcchhhhcc------CHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence            999999999843212      1234589999999999999998 777777654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=91.23  E-value=2.2  Score=43.43  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||-||-|.=.++..|++..+....|++.  |..+++.+   .+++|++.+.-..+.++.+ |+.+...    ..
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~----~~  147 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVP----EF  147 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhccc----cc
Confidence            3467899999999999999999887533356654  44344443   3566665543334555544 6655422    12


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ..||.|+.++   |.   .    ++      ...    ....|+++|.+.+....
T Consensus       148 ~~fD~Ii~~~---g~---~----~i------p~~----~~~~LkpgG~Lvv~~~~  182 (322)
T PRK13943        148 APYDVIFVTV---GV---D----EV------PET----WFTQLKEGGRVIVPINL  182 (322)
T ss_pred             CCccEEEECC---ch---H----Hh------HHH----HHHhcCCCCEEEEEeCC
Confidence            4699999873   21   1    11      111    23579999998887643

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.07  E-value=0.43  Score=46.38  Aligned_cols=146  Identities=18%  Similarity=0.256  Sum_probs=86.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +.++||++|=|+-+-+..|.++. +...|++--+|.. -++.++|=......  +..-.++|++ -||-..-+..   ..
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~~---~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKET---QE  148 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHTS---SS
T ss_pred             CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHhc---cC
Confidence            56799999999999999998764 3457888877743 24444543221111  5555677744 4665543221   23


Q ss_pred             -cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc----CcccHHHHHHhCCcEEE
Q 014642          116 -KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF----CKWHIEELARKHSLLRL  190 (421)
Q Consensus       116 -~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY----~sWnI~~LAa~aGL~L~  190 (421)
                       +||.||-+-+...  +..       .+ ..-..||+.|++.|+++|-+.+..  +.|+    ..+.|...-+...- ..
T Consensus       149 ~~yDvIi~D~~dp~--~~~-------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~-~v  215 (246)
T PF01564_consen  149 EKYDVIIVDLTDPD--GPA-------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP-QV  215 (246)
T ss_dssp             T-EEEEEEESSSTT--SCG-------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS-EE
T ss_pred             CcccEEEEeCCCCC--CCc-------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC-ce
Confidence             8999999888732  211       12 345799999999999999988877  3233    33555554444444 33


Q ss_pred             EEeeCCCCCCCC
Q 014642          191 DCVQFRKEDYPG  202 (421)
Q Consensus       191 ~~~~F~~~~YPG  202 (421)
                      ....+....||+
T Consensus       216 ~~~~~~vP~~~~  227 (246)
T PF01564_consen  216 KPYTAYVPSYGS  227 (246)
T ss_dssp             EEEEEECTTSCS
T ss_pred             EEEEEEcCeecc
Confidence            333333333443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=90.78  E-value=0.74  Score=35.51  Aligned_cols=95  Identities=21%  Similarity=0.328  Sum_probs=60.2

Q ss_pred             EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccEEE
Q 014642           42 LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDRII  121 (421)
Q Consensus        42 LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDrII  121 (421)
                      |=+|=|+=.++..|++.  .+.+++++-.+..  ..+      ..-+.++..++. +...|+++|    .+..+.||.|+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~--~~~------~~~~~~~~~~~~-~~~~d~~~l----~~~~~sfD~v~   65 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEE--MLE------QARKRLKNEGVS-FRQGDAEDL----PFPDNSFDVVF   65 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HH--HHH------HHHHHTTTSTEE-EEESBTTSS----SS-TT-EEEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHH--HHH------HHHhcccccCch-heeehHHhC----ccccccccccc
Confidence            34677888899999987  4567877766532  211      112233344555 667778887    34578999999


Q ss_pred             EcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          122 FNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       122 FNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      .+.=.-=.              .=...+++.+..+|+|+|.+.|
T Consensus        66 ~~~~~~~~--------------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   66 SNSVLHHL--------------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EESHGGGS--------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccceeec--------------cCHHHHHHHHHHHcCcCeEEeC
Confidence            87532211              1245889999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=90.71  E-value=2.3  Score=44.04  Aligned_cols=135  Identities=14%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=+|=|-=.||+.||+..   ..|+|  .|..++..+   .+..|++...-.++.++. -|+.++-.........
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~---~~V~~--vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~~  362 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA---KSVVG--IEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQI  362 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC---CEEEE--EEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCCC
Confidence            45689888888888888888753   35555  453333332   466776654333455544 4665532211123457


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCc-ccHHHHHHhCCcEEEEEeeC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCK-WHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~s-WnI~~LAa~aGL~L~~~~~F  195 (421)
                      ||.||+|=|..|.            ..+++...    . -|++++-|+|+. +  |-.. -++..| .+.||.+....+|
T Consensus       363 ~D~vi~dPPr~G~------------~~~~l~~l----~-~l~~~~ivyvsc-~--p~tlard~~~l-~~~gy~~~~~~~~  421 (431)
T TIGR00479       363 PDVLLLDPPRKGC------------AAEVLRTI----I-ELKPERIVYVSC-N--PATLARDLEFL-CKEGYGITWVQPV  421 (431)
T ss_pred             CCEEEECcCCCCC------------CHHHHHHH----H-hcCCCEEEEEcC-C--HHHHHHHHHHH-HHCCeeEEEEEEe
Confidence            9999999998874            12222221    1 267777666753 3  4221 233334 3568999999999


Q ss_pred             CCCCCCCC
Q 014642          196 RKEDYPGY  203 (421)
Q Consensus       196 ~~~~YPGY  203 (421)
                      |  .||.=
T Consensus       422 D--mFP~T  427 (431)
T TIGR00479       422 D--MFPHT  427 (431)
T ss_pred             c--cCCCC
Confidence            8  57743

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=90.21  E-value=7  Score=37.57  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||-||=|.=-.+.++++ .| +..++|+-.|. ..+ +   .+++|++   ..|+...  +   .+..    ...
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~-~g-~~~v~giDis~-~~l-~---~A~~n~~---~~~~~~~--~---~~~~----~~~  178 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAK-LG-AKKVLAVDIDP-QAV-E---AARENAE---LNGVELN--V---YLPQ----GDL  178 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHH-cC-CCeEEEEECCH-HHH-H---HHHHHHH---HcCCCce--E---EEcc----CCC
Confidence            3577999999998655555544 44 33577775553 222 2   3555643   2343100  0   1110    012


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      .||.|+.|..                 ...+..++..+..+|+++|.+.++-...  ...-.+.+..++.||.+.+..
T Consensus       179 ~fD~Vvani~-----------------~~~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        179 KADVIVANIL-----------------ANPLLELAPDLARLLKPGGRLILSGILE--EQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             CcCEEEEcCc-----------------HHHHHHHHHHHHHhcCCCcEEEEEECcH--hhHHHHHHHHHHCCCEEEEEE
Confidence            7999999842                 1124567888889999999999873221  133456677888999888653

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=90.09  E-value=5.2  Score=41.86  Aligned_cols=136  Identities=16%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=+|=|.=.||++||+..   ..++|  .|..++..+   .|+.|++...-.++.+ ..-|+.+.-....+....
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~g--vD~s~~al~---~A~~n~~~~~~~~v~~-~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQA---AEVVG--VEGVEAMVE---RARENARRNGLDNVTF-YHANLEEDFTDQPWALGG  367 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhC---CEEEE--EeCCHHHHH---HHHHHHHHcCCCceEE-EEeChHHhhhhhhhhcCC
Confidence            45789888888888888888763   35665  453333333   3666765443223433 344665432111123457


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ||.||.|=|..|. .            +++..    ... +++++-|+|+-.-..  -.-++..|. +.||.+.+..+||
T Consensus       368 fD~Vi~dPPr~g~-~------------~~~~~----l~~-~~~~~ivyvSCnp~t--laRDl~~L~-~~gY~l~~i~~~D  426 (443)
T PRK13168        368 FDKVLLDPPRAGA-A------------EVMQA----LAK-LGPKRIVYVSCNPAT--LARDAGVLV-EAGYRLKRAGMLD  426 (443)
T ss_pred             CCEEEECcCCcCh-H------------HHHHH----HHh-cCCCeEEEEEeChHH--hhccHHHHh-hCCcEEEEEEEec
Confidence            9999999999984 1            11111    111 477777777763322  223555553 5789999999999


Q ss_pred             CCCCCCCc
Q 014642          197 KEDYPGYS  204 (421)
Q Consensus       197 ~~~YPGY~  204 (421)
                        .||.=.
T Consensus       427 --mFP~T~  432 (443)
T PRK13168        427 --MFPHTG  432 (443)
T ss_pred             --cCCCCC
Confidence              588433

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=89.87  E-value=4.5  Score=40.82  Aligned_cols=133  Identities=15%  Similarity=0.239  Sum_probs=74.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+.+||=||=|+=.++..+++..  +..|++  .|.......+.. +  .-..+. ...+.++ ..|+..+..     ..
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g--~~~V~G--iD~S~~~l~q~~-a--~~~~~~~~~~i~~~-~~d~e~lp~-----~~  188 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAG--AKLVVG--IDPSQLFLCQFE-A--VRKLLGNDQRAHLL-PLGIEQLPA-----LK  188 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC--CCEEEE--EcCCHHHHHHHH-H--HHHhcCCCCCeEEE-eCCHHHCCC-----cC
Confidence            35799999988888888888763  334544  553333322211 1  111111 1234443 346666642     46


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe--cCCC------C---c----Ccc----
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH--KTTA------P---F----CKW----  176 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL--k~g~------P---Y----~sW----  176 (421)
                      .||.|+.+    |.         + .|..=...+|+.+...|+|||++.++.  .++.      |   |    +.|    
T Consensus       189 ~FD~V~s~----~v---------l-~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps  254 (322)
T PRK15068        189 AFDTVFSM----GV---------L-YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPS  254 (322)
T ss_pred             CcCEEEEC----Ch---------h-hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCC
Confidence            79999964    11         1 121113467889999999999998763  1221      1   2    112    


Q ss_pred             --cHHHHHHhCCcEEEEEeeCC
Q 014642          177 --HIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       177 --nI~~LAa~aGL~L~~~~~F~  196 (421)
                        .+..+.+++||..++.+...
T Consensus       255 ~~~l~~~L~~aGF~~i~~~~~~  276 (322)
T PRK15068        255 VPALKNWLERAGFKDVRIVDVS  276 (322)
T ss_pred             HHHHHHHHHHcCCceEEEEeCC
Confidence              23556667777777666544

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=89.70  E-value=4.8  Score=41.01  Aligned_cols=130  Identities=19%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+.+||=||=|+=-|+..|++.   +.+|  |..|.-++..+.   ++.+.+..- ..++.++. -|+.++.    ....
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V--~GID~s~~~i~~---Ar~~~~~~~~~~~i~~~~-~dae~l~----~~~~  197 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATV--TGVDAVDKNVKI---ARLHADMDPVTSTIEYLC-TTAEKLA----DEGR  197 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEE--EEEeCCHHHHHH---HHHHHHhcCcccceeEEe-cCHHHhh----hccC
Confidence            4568999999998899999863   2344  455654444432   333321110 11344333 4666653    2347


Q ss_pred             cccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------------------C--c
Q 014642          116 KFDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------------------P--F  173 (421)
Q Consensus       116 ~FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------P--Y  173 (421)
                      .||.|+...  -|+..                ...|++.+..+|+|+|.+.|+--+..                  |  .
T Consensus       198 ~FD~Vi~~~vLeHv~d----------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gt  261 (322)
T PLN02396        198 KFDAVLSLEVIEHVAN----------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGT  261 (322)
T ss_pred             CCCEEEEhhHHHhcCC----------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCC
Confidence            899999865  33331                24688889999999999998853321                  1  1


Q ss_pred             Ccc-------cHHHHHHhCCcEEEEEeeC
Q 014642          174 CKW-------HIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       174 ~sW-------nI~~LAa~aGL~L~~~~~F  195 (421)
                      ..|       .+..+.+++||.+.+..-+
T Consensus       262 h~~~~f~tp~eL~~lL~~aGf~i~~~~G~  290 (322)
T PLN02396        262 HQWSSFVTPEELSMILQRASVDVKEMAGF  290 (322)
T ss_pred             cCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence            123       3566777788877766433

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=89.61  E-value=3.5  Score=41.72  Aligned_cols=137  Identities=20%  Similarity=0.329  Sum_probs=92.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +-.++++||=||=|==+.+.=+|+.+  +++||+.++.. +++    ..+   -+.+++.|....-.|-   |.....+.
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~-~Q~----~~~---~~r~~~~gl~~~v~v~---l~d~rd~~  135 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSE-EQL----AYA---EKRIAARGLEDNVEVR---LQDYRDFE  135 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCH-HHH----HHH---HHHHHHcCCCcccEEE---eccccccc
Confidence            45678999999999999999999998  57999999863 222    222   2346677766222222   22222333


Q ss_pred             cCcccEEEE--cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE-ecCCC-C---c-------------
Q 014642          114 KRKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS-HKTTA-P---F-------------  173 (421)
Q Consensus       114 ~~~FDrIIF--NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT-Lk~g~-P---Y-------------  173 (421)
                       .+|||||-  -|=|+|...              ...||+.+..+|+++|.+.+- +-... +   +             
T Consensus       136 -e~fDrIvSvgmfEhvg~~~--------------~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~  200 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKEN--------------YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGE  200 (283)
T ss_pred             -cccceeeehhhHHHhCccc--------------HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCc
Confidence             34999985  577777411              469999999999999985432 21111 1   1             


Q ss_pred             --CcccHHHHHHhCCcEEEEEeeCCCC
Q 014642          174 --CKWHIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       174 --~sWnI~~LAa~aGL~L~~~~~F~~~  198 (421)
                        ....|.+.+.++|+.+.....|.+.
T Consensus       201 lPs~~~i~~~~~~~~~~v~~~~~~~~h  227 (283)
T COG2230         201 LPSISEILELASEAGFVVLDVESLRPH  227 (283)
T ss_pred             CCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence              3356777889999999998888865

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=89.53  E-value=2.9  Score=44.80  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=78.0

Q ss_pred             HHHHhCCC--EEEeecccCCcCcccccccCcccEEEEcCCCCCC--CCCcc------cHHHHHHhHHHHHHHHHhhHhcc
Q 014642           88 DTLKKLGA--SIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGF--HGKEE------DDEVIRMHMSLVEGFFRNASGML  157 (421)
Q Consensus        88 ~~Lr~~Gv--~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~--~GkEd------~~~~I~~nr~LL~~FF~SA~~lL  157 (421)
                      .-|.++|+  +|.-+-|+..+.... +. ..||||.-+=|+.|.  .+|..      ....|..+..|=+..|.+|.+++
T Consensus       284 ~n~~rlGv~ntiv~n~D~~ef~~~~-~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv  361 (460)
T KOG1122|consen  284 ANLHRLGVTNTIVSNYDGREFPEKE-FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV  361 (460)
T ss_pred             HHHHHhCCCceEEEccCcccccccc-cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc
Confidence            33445554  466667777654322 22 389999999999992  22222      23567778888889999999999


Q ss_pred             CCCCeEEEEecCCCC-cCcccHHHHHHhC-CcEEEEEeeCCCC
Q 014642          158 RPRGEVHVSHKTTAP-FCKWHIEELARKH-SLLRLDCVQFRKE  198 (421)
Q Consensus       158 ~~~GeIHVTLk~g~P-Y~sWnI~~LAa~a-GL~L~~~~~F~~~  198 (421)
                      ++||-|.-+-|+-.| -|.|.|..+-++. .+.|....++-..
T Consensus       362 ~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~  404 (460)
T KOG1122|consen  362 KAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGG  404 (460)
T ss_pred             cCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCC
Confidence            999999999998766 4789998755555 8999888665443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=89.19  E-value=1.2  Score=42.65  Aligned_cols=106  Identities=22%  Similarity=0.309  Sum_probs=70.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||-||-|-==+|..|+...+....++  +.|..++|.+   .|+.||+.+.-.++.++++ |+..-..    ..
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv--~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~~----~~  139 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVV--SVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGWP----EE  139 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEE--EEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTTG----GG
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEE--EECccHHHHH---HHHHHHHHhccCceeEEEc-chhhccc----cC
Confidence            45688999999998778888888776432243  6676677765   4888999887778888887 5543211    24


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ..||+|+.+.--..          +  -.    .++    +.|++||.+.+-+.++
T Consensus       140 apfD~I~v~~a~~~----------i--p~----~l~----~qL~~gGrLV~pi~~~  175 (209)
T PF01135_consen  140 APFDRIIVTAAVPE----------I--PE----ALL----EQLKPGGRLVAPIGQG  175 (209)
T ss_dssp             -SEEEEEESSBBSS--------------H----HHH----HTEEEEEEEEEEESSS
T ss_pred             CCcCEEEEeeccch----------H--HH----HHH----HhcCCCcEEEEEEccC
Confidence            68999999863321          1  11    222    3689999999999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=89.01  E-value=3.7  Score=41.14  Aligned_cols=104  Identities=24%  Similarity=0.389  Sum_probs=76.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk  113 (421)
                      +.+.+||=.|=|.=+.|.+||+..|+.-.|  ++||-.++-.   .-|.+|+.+. -++  +++.. -|+++-..     
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~---k~A~~Nl~~~-~l~d~v~~~~-~Dv~~~~~-----  160 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFA---KTARENLSEF-GLGDRVTLKL-GDVREGID-----  160 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHH---HHHHHHHHHh-ccccceEEEe-cccccccc-----
Confidence            457899999999999999999998764455  4677666554   4589999886 222  33322 45555432     


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ...||.|+-+-|-.                   ..+...+.++|+|+|.+.+=+.+-
T Consensus       161 ~~~vDav~LDmp~P-------------------W~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         161 EEDVDAVFLDLPDP-------------------WNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             ccccCEEEEcCCCh-------------------HHHHHHHHHHhCCCcEEEEEcCCH
Confidence            24899999999865                   367788999999999988776554

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=88.90  E-value=4  Score=40.04  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH-GVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vlh-gVDATkL~~~~~Lk~~  115 (421)
                      +..+||=||=|.=.+++.|++.   +..|+|.  |..++..+   .++.+++.   .|+.|.. ..|+....    + ..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~av--D~s~~ai~---~~~~~~~~---~~l~v~~~~~D~~~~~----~-~~  183 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAV--DINQQSLE---NLQEIAEK---ENLNIRTGLYDINSAS----I-QE  183 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEE--ECCHHHHH---HHHHHHHH---cCCceEEEEechhccc----c-cC
Confidence            3459999999988888888874   3456555  53333333   13334332   3332221 22443321    2 46


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      .||.|+-++-..-            .+...+..+++.+.++|+++|.+.+
T Consensus       184 ~fD~I~~~~vl~~------------l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        184 EYDFILSTVVLMF------------LNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CccEEEEcchhhh------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            7999998864221            1234466889999999999999554

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=88.85  E-value=5  Score=37.13  Aligned_cols=100  Identities=21%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||-|.=.++..|++..+   .+++  .|..+++.+   .+.+|+..+.-.++.+..+ |+.+.  .  ....
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~--vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~--~~~~  143 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFS--VERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--W--PAYA  143 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhC---EEEE--EeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--C--CcCC
Confidence            4568999999998777877776642   4544  443344443   3556665542223454444 44321  1  1236


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .||+|+.+.+...          +      .    .....+|+++|.+.+...
T Consensus       144 ~fD~I~~~~~~~~----------~------~----~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        144 PFDRILVTAAAPE----------I------P----RALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCEEEEccCchh----------h------h----HHHHHhcCCCcEEEEEEc
Confidence            7999999864221          1      1    123468999999998876

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=88.80  E-value=5.6  Score=39.54  Aligned_cols=137  Identities=20%  Similarity=0.255  Sum_probs=84.2

Q ss_pred             eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642           40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR  119 (421)
Q Consensus        40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr  119 (421)
                      +||=+|=|.=-=|.+|+.+.. ..+|+||=... +.|.    -|+.|.+.+   |+.-++.|+. ++-.  .+++ +||.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~---~l~~~~~~~~-dlf~--~~~~-~fDl  179 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERN---GLVRVLVVQS-DLFE--PLRG-KFDL  179 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHc---CCccEEEEee-eccc--ccCC-ceeE
Confidence            799999998888888888764 35888886654 3332    245565443   3211223333 3222  1233 8999


Q ss_pred             EEEcCCCCCCCCCcccHH---------HHH--HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC-c
Q 014642          120 IIFNFPHAGFHGKEEDDE---------VIR--MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS-L  187 (421)
Q Consensus       120 IIFNFPH~G~~GkEd~~~---------~I~--~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG-L  187 (421)
                      ||+|=|=+-....+....         .+.  .-.+++..|+..+..+|+++|-+.+-+-.++.   =.|+++-...| +
T Consensus       180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~---~~v~~~~~~~~~~  256 (280)
T COG2890         180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG---EAVKALFEDTGFF  256 (280)
T ss_pred             EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH---HHHHHHHHhcCCc
Confidence            999999987531111110         010  13568899999999999999999998875431   13455666666 4


Q ss_pred             EEEEE
Q 014642          188 LRLDC  192 (421)
Q Consensus       188 ~L~~~  192 (421)
                      ..+..
T Consensus       257 ~~v~~  261 (280)
T COG2890         257 EIVET  261 (280)
T ss_pred             eEEEE
Confidence            43433

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=88.63  E-value=4.1  Score=37.06  Aligned_cols=102  Identities=20%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=||=|.=+++..|++... ...++++-.+  .+..+.   +..++.    ..+.+ ...|++.+.    +....|
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~--~~~~~~---~~~~~~----~~~~~-~~~d~~~~~----~~~~~f   99 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDIS--AGMLAQ---AKTKLS----ENVQF-ICGDAEKLP----LEDSSF   99 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeCh--HHHHHH---HHHhcC----CCCeE-EecchhhCC----CCCCce
Confidence            36899999999999999988753 3456665543  222211   111111    13343 335666543    235679


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      |.||.++..--.   .+           ...++..+..+|+++|.+.++..
T Consensus       100 D~vi~~~~l~~~---~~-----------~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       100 DLIVSNLALQWC---DD-----------LSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             eEEEEhhhhhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEeC
Confidence            999998753321   11           23688999999999999998754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=88.36  E-value=0.19  Score=50.40  Aligned_cols=158  Identities=21%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             cccccceeeeccCCCCeEEEEecCChhHHHH--HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH--HHhCCCEEEe
Q 014642           24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFA--LSQKFGSASNICASSLDSYETVVKKFKEARSNLDT--LKKLGASIIH   99 (421)
Q Consensus        24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlS--La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~--Lr~~Gv~Vlh   99 (421)
                      |..++++||..++.+++||=+    ||++=+  ++-+.+.+..  +|+.|.-...++   .+++|+..  |....++. .
T Consensus       110 DqR~nR~~v~~~~~gkrvLnl----FsYTGgfsv~Aa~gGA~~--v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~-~  179 (286)
T PF10672_consen  110 DQRENRKWVRKYAKGKRVLNL----FSYTGGFSVAAAAGGAKE--VVSVDSSKRALE---WAKENAALNGLDLDRHRF-I  179 (286)
T ss_dssp             GGHHHHHHHHHHCTTCEEEEE----T-TTTHHHHHHHHTTESE--EEEEES-HHHHH---HHHHHHHHTT-CCTCEEE-E
T ss_pred             HHHhhHHHHHHHcCCCceEEe----cCCCCHHHHHHHHCCCCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEE-E
Confidence            556789999999999999965    665432  2222333433  457776444443   25666432  22222222 2


Q ss_pred             ecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHH
Q 014642          100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIE  179 (421)
Q Consensus       100 gVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~  179 (421)
                      .-|+-+.-... -+..+||.||.+=|-.. +++.+   ..+...+|    +..|.++|+++|.+.++.|... .+.=.+.
T Consensus       180 ~~Dvf~~l~~~-~~~~~fD~IIlDPPsF~-k~~~~---~~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~  249 (286)
T PF10672_consen  180 QGDVFKFLKRL-KKGGRFDLIILDPPSFA-KSKFD---LERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLL  249 (286)
T ss_dssp             ES-HHHHHHHH-HHTT-EEEEEE--SSEE-SSTCE---HHHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHH
T ss_pred             ecCHHHHHHHH-hcCCCCCEEEECCCCCC-CCHHH---HHHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHH
Confidence            34665421111 13578999999999876 45543   22334444    4668889999999988888653 2211123


Q ss_pred             HHHHhC--CcEEEEEeeCCCCCCCC
Q 014642          180 ELARKH--SLLRLDCVQFRKEDYPG  202 (421)
Q Consensus       180 ~LAa~a--GL~L~~~~~F~~~~YPG  202 (421)
                      +..+++  .+.+++. --.+++||.
T Consensus       250 ~~~~~~a~~~~~~~~-~~~p~df~~  273 (286)
T PF10672_consen  250 EAVAEAAREVEFIER-LGQPPDFPD  273 (286)
T ss_dssp             HHHHHHHHHCEEEEE-EE-------
T ss_pred             HHHHHhCccceEeee-ecccccccc
Confidence            322322  3444433 236677875

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=87.97  E-value=6.3  Score=37.07  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=63.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=||-|.=.+|..|++..+....+++  .|-.+++.+   .++.|++.+.-.++++. .-|+....    ....
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~--vE~~~~~~~---~a~~~l~~~g~~~v~~~-~gd~~~~~----~~~~  144 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVT--IERIPELAE---KAKKTLKKLGYDNVEVI-VGDGTLGY----EENA  144 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEE--EeCCHHHHH---HHHHHHHHcCCCCeEEE-ECCcccCC----CcCC
Confidence            46789999999999999999988754344544  554444543   35566654432234433 34554432    1346


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||+|+.+.-      .+.    +      ...    ..+.|+++|.+.+.+.+
T Consensus       145 ~fD~I~~~~~------~~~----~------~~~----l~~~LkpgG~lvi~~~~  178 (212)
T PRK13942        145 PYDRIYVTAA------GPD----I------PKP----LIEQLKDGGIMVIPVGS  178 (212)
T ss_pred             CcCEEEECCC------ccc----c------hHH----HHHhhCCCcEEEEEEcC
Confidence            8999998631      110    1      112    23479999999998744

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=87.18  E-value=7  Score=36.28  Aligned_cols=131  Identities=12%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++.   +..|++.-.+  +++..   .+..++..... ..+. ..-.|+..+.       
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s--~~~i~---~a~~~~~~~~~~~~i~-~~~~d~~~~~-------  117 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDIS--EQMVQ---MARNRAQGRDVAGNVE-FEVNDLLSLC-------  117 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHHHhcCCCCceE-EEECChhhCC-------
Confidence            35689999999988899888864   3356655443  22222   13333322111 1222 2234555442       


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----------------------  171 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----------------------  171 (421)
                      ..||.|+..+...-. ..           .-+...+..+..++++  .+.|+.....                       
T Consensus       118 ~~fD~ii~~~~l~~~-~~-----------~~~~~~l~~i~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (219)
T TIGR02021       118 GEFDIVVCMDVLIHY-PA-----------SDMAKALGHLASLTKE--RVIFTFAPKTAWLAFLKMIGELFPGSSRATSAY  183 (219)
T ss_pred             CCcCEEEEhhHHHhC-CH-----------HHHHHHHHHHHHHhCC--CEEEEECCCchHHHHHHHHHhhCcCcccccceE
Confidence            679999986553221 00           1123344455555653  3444543221                       


Q ss_pred             CcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          172 PFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       172 PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ++...+++.+++.+|+.++.+..+.
T Consensus       184 ~~~~~~~~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       184 LHPMTDLERALGELGWKIVREGLVS  208 (219)
T ss_pred             EecHHHHHHHHHHcCceeeeeeccc
Confidence            1233457778888888888775443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK06940 short chain dehydrogenase; Provisional

Probab=86.74  E-value=5.8  Score=37.98  Aligned_cols=77  Identities=13%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccc-----
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSEL-----  112 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~L-----  112 (421)
                      +.+|+.|= . .-.+++|+.+..+.+|++++.+. +.+       ++..++|+..|.++ .+.+|.++......+     
T Consensus         3 k~~lItGa-~-gIG~~la~~l~~G~~Vv~~~r~~-~~~-------~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~   72 (275)
T PRK06940          3 EVVVVIGA-G-GIGQAIARRVGAGKKVLLADYNE-ENL-------EAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ   72 (275)
T ss_pred             CEEEEECC-C-hHHHHHHHHHhCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence            45777784 4 57777787776677899887753 222       22345566667654 577898886543222     


Q ss_pred             ccCcccEEEEcCC
Q 014642          113 SKRKFDRIIFNFP  125 (421)
Q Consensus       113 k~~~FDrIIFNFP  125 (421)
                      ...++|.||.|--
T Consensus        73 ~~g~id~li~nAG   85 (275)
T PRK06940         73 TLGPVTGLVHTAG   85 (275)
T ss_pred             hcCCCCEEEECCC
Confidence            1256899998853

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=86.63  E-value=3.8  Score=42.70  Aligned_cols=105  Identities=22%  Similarity=0.198  Sum_probs=65.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++..   ..|+|.  |-..++.++      +.+ +.. .....+...|+....  ..+..
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~---~~v~gi--D~s~~~l~~------a~~-~~~~~~~i~~~~~d~~~~~--~~~~~  101 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA---GQVIAL--DFIESVIKK------NES-INGHYKNVKFMCADVTSPD--LNISD  101 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC---CEEEEE--eCCHHHHHH------HHH-HhccCCceEEEEecccccc--cCCCC
Confidence            345699999999999999999863   356554  432333321      111 111 122233445665432  22345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ..||.|+.+++..=.            ...-+..+++.+..+|+++|.|.+.
T Consensus       102 ~~fD~I~~~~~l~~l------------~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        102 GSVDLIFSNWLLMYL------------SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCEEEEehhhhHHhC------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            789999999874322            1223568889999999999998775

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=85.91  E-value=9.9  Score=37.52  Aligned_cols=101  Identities=20%  Similarity=0.314  Sum_probs=61.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~Lk~~  115 (421)
                      ++.+||=||=|.=..+.++++ +| +..++|.-.+.. .+    ..+++|+..- .....+. ...|   +.   .....
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~-al----~~a~~n~~~n-~~~~~~~~~~~~---~~---~~~~~  224 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL-AV----ESARKNAELN-QVSDRLQVKLIY---LE---QPIEG  224 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH-HH----HHHHHHHHHc-CCCcceEEEecc---cc---cccCC
Confidence            467999999999777777775 34 457888877643 22    1345565421 1111111 1112   11   11246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      +||.|+.|..  .               .-+..++..+..+|+|+|.+.++-.
T Consensus       225 ~fDlVvan~~--~---------------~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       225 KADVIVANIL--A---------------EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             CceEEEEecC--H---------------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8999999963  1               1134677888999999999988743

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=85.74  E-value=3  Score=41.18  Aligned_cols=130  Identities=21%  Similarity=0.347  Sum_probs=79.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=.|-|.=|+|.+|++..+..-.|  .|||-.++-.+   .|..|++...-.+...++.-|+.+-.-...+ ..
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v--~t~E~~~~~~~---~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~~  112 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHV--YTYEFREDRAE---KARKNFERHGLDDNVTVHHRDVCEEGFDEEL-ES  112 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEE--EEEESSHHHHH---HHHHHHHHTTCCTTEEEEES-GGCG--STT--TT
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEE--EccccCHHHHH---HHHHHHHHcCCCCCceeEecceecccccccc-cC
Confidence            467899999999999999999998754344  46776665543   4878877654334445666676542221111 36


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhcc-CCCCeEEEEecCCCCcCcccHH---HHHHhCCcEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGML-RPRGEVHVSHKTTAPFCKWHIE---ELARKHSLLRLD  191 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL-~~~GeIHVTLk~g~PY~sWnI~---~LAa~aGL~L~~  191 (421)
                      .+|.|+-+-|..-                   ....+|.+.| +++|.|.+=+..-+     |+.   +..++.||..++
T Consensus       113 ~~DavfLDlp~Pw-------------------~~i~~~~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~  168 (247)
T PF08704_consen  113 DFDAVFLDLPDPW-------------------EAIPHAKRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIE  168 (247)
T ss_dssp             SEEEEEEESSSGG-------------------GGHHHHHHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEE
T ss_pred             cccEEEEeCCCHH-------------------HHHHHHHHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeE
Confidence            7999999999875                   3355677888 77787766543321     222   233346887766


Q ss_pred             EeeC
Q 014642          192 CVQF  195 (421)
Q Consensus       192 ~~~F  195 (421)
                      .+.-
T Consensus       169 ~~Ev  172 (247)
T PF08704_consen  169 TVEV  172 (247)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=85.61  E-value=1.8  Score=36.87  Aligned_cols=119  Identities=20%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||=|.=.|+..|++.   +.+++++-..  +.+.++            ..-....+  ++..    .....+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~--~~~~~~------------~~~~~~~~--~~~~----~~~~~~   77 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDIS--PQMIEK------------RNVVFDNF--DAQD----PPFPDG   77 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESS--HHHHHH------------TTSEEEEE--ECHT----HHCHSS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHhh------------hhhhhhhh--hhhh----hhcccc
Confidence            45679999999999999999664   3366655443  333332            11111111  1111    122457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC---------------------CcC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA---------------------PFC  174 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------------PY~  174 (421)
                      .||.|+.+  ++=. -       +. +   ...+++....+|+|+|.+.|+.....                     .|+
T Consensus        78 ~fD~i~~~--~~l~-~-------~~-d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (161)
T PF13489_consen   78 SFDLIICN--DVLE-H-------LP-D---PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFS  143 (161)
T ss_dssp             SEEEEEEE--SSGG-G-------SS-H---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBB
T ss_pred             chhhHhhH--HHHh-h-------cc-c---HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCC
Confidence            89999998  3321 1       11 1   55888889999999999999886531                     134


Q ss_pred             cccHHHHHHhCCcEEEE
Q 014642          175 KWHIEELARKHSLLRLD  191 (421)
Q Consensus       175 sWnI~~LAa~aGL~L~~  191 (421)
                      .+.+..+++++||.+++
T Consensus       144 ~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen  144 PDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHCCCEEEE
Confidence            56888999999998875

...

>PLN02823 spermine synthase

Probab=84.70  E-value=2.9  Score=42.94  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=67.9

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      .++||++|=|+-+-++-++++. +...|++--+|.. -++.++|-..  +-..|..-.++|+.+ ||-+.-+.   ..++
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~~---~~~~  176 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELEK---RDEK  176 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHhh---CCCC
Confidence            4689999999998888787754 3457888888742 2333333211  111234445655543 44442211   2467


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHH-hhHhccCCCCeEEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFR-NASGMLRPRGEVHVS  166 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~-SA~~lL~~~GeIHVT  166 (421)
                      ||.||.+.+..-..|.        .....-..||+ .+...|+++|-+.+-
T Consensus       177 yDvIi~D~~dp~~~~~--------~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        177 FDVIIGDLADPVEGGP--------CYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ccEEEecCCCccccCc--------chhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            9999999764211011        01222358998 899999999976543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=84.09  E-value=2.7  Score=44.22  Aligned_cols=164  Identities=22%  Similarity=0.240  Sum_probs=93.3

Q ss_pred             cccccceeeeccCCCCeEEEEecCChhHHHHH--HHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCC-CE-EE
Q 014642           24 DEKEEEKWIMHYSSKHQILLVGEGDFSFSFAL--SQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLG-AS-II   98 (421)
Q Consensus        24 ~~~~~~K~i~~Yss~~rILLVGEGDFSFSlSL--a~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~G-v~-Vl   98 (421)
                      |..++.+|+..+..++++|=+    ||++=+.  +-+.+.+..+  |+-| |...|.    -|++|++ |.... .+ -+
T Consensus       204 DqR~~R~~l~~~~~GkrvLNl----FsYTGgfSv~Aa~gGA~~v--t~VD~S~~al~----~a~~N~~-LNg~~~~~~~~  272 (393)
T COG1092         204 DQRDNRRALGELAAGKRVLNL----FSYTGGFSVHAALGGASEV--TSVDLSKRALE----WARENAE-LNGLDGDRHRF  272 (393)
T ss_pred             HhHHHHHHHhhhccCCeEEEe----cccCcHHHHHHHhcCCCce--EEEeccHHHHH----HHHHHHH-hcCCCccceee
Confidence            456778888888889999866    5554332  2233334343  3445 333332    2566653 33221 11 22


Q ss_pred             eecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc--
Q 014642           99 HGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW--  176 (421)
Q Consensus        99 hgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW--  176 (421)
                      ..-||=+.-+...-++.+||.||.+=|-.+. ++.+..+..+.+..|+.    -|.++|+|+|.+.+..|... ...=  
T Consensus       273 i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r-~k~~~~~~~rdy~~l~~----~~~~iL~pgG~l~~~s~~~~-~~~~~f  346 (393)
T COG1092         273 IVGDVFKWLRKAERRGEKFDLIILDPPSFAR-SKKQEFSAQRDYKDLND----LALRLLAPGGTLVTSSCSRH-FSSDLF  346 (393)
T ss_pred             ehhhHHHHHHHHHhcCCcccEEEECCccccc-CcccchhHHHHHHHHHH----HHHHHcCCCCEEEEEecCCc-cCHHHH
Confidence            2334444333323345799999999999985 55543444455555543    47889999999998888763 3322  


Q ss_pred             --cHHHHHHhCCcEEEEE-eeCCCCCCCCCc
Q 014642          177 --HIEELARKHSLLRLDC-VQFRKEDYPGYS  204 (421)
Q Consensus       177 --nI~~LAa~aGL~L~~~-~~F~~~~YPGY~  204 (421)
                        .|..-|...+...... ..-.+.|+|...
T Consensus       347 ~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~  377 (393)
T COG1092         347 LEIIARAAAAAGRRAQEIEGEGQPPDHPRNA  377 (393)
T ss_pred             HHHHHHHHHhcCCcEEEeeccCCCCCccccc
Confidence              2334555555544444 466666777443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=84.08  E-value=6  Score=37.54  Aligned_cols=113  Identities=16%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             eeccCCCCeEEEEecCChhHHHH-HHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFA-LSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlS-La~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      +.....+.+||=+|=|.=+|++. |++.   +..|++-  |...++.+   .++.|++.+.-..+.++ .-|+.+.-.. 
T Consensus        48 l~~~~~~~~vLDl~~GsG~l~l~~lsr~---a~~V~~v--E~~~~a~~---~a~~Nl~~~~~~~v~~~-~~D~~~~l~~-  117 (199)
T PRK10909         48 LAPVIVDARCLDCFAGSGALGLEALSRY---AAGATLL--EMDRAVAQ---QLIKNLATLKAGNARVV-NTNALSFLAQ-  117 (199)
T ss_pred             HhhhcCCCEEEEcCCCccHHHHHHHHcC---CCEEEEE--ECCHHHHH---HHHHHHHHhCCCcEEEE-EchHHHHHhh-
Confidence            33334567898887777777764 4443   3355554  54343332   46778777653345554 3466542111 


Q ss_pred             ccccCcccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          111 ELSKRKFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                        ....||.|++|=| +.|.            ..+++.....  ..+|.++|-|+|.+...
T Consensus       118 --~~~~fDlV~~DPPy~~g~------------~~~~l~~l~~--~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        118 --PGTPHNVVFVDPPFRKGL------------LEETINLLED--NGWLADEALIYVESEVE  162 (199)
T ss_pred             --cCCCceEEEECCCCCCCh------------HHHHHHHHHH--CCCcCCCcEEEEEecCC
Confidence              1346999999999 5542            2334443332  46789999999997653

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=82.98  E-value=4.1  Score=39.15  Aligned_cols=112  Identities=12%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHS  110 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~  110 (421)
                      +......++||=||=|-=.=+++|++..+.+..|++.-.|.  +.   +.-|++|++...-. .++++.| ||.+.-...
T Consensus        63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~---~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l  136 (234)
T PLN02781         63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EA---YEVGLEFIKKAGVDHKINFIQS-DALSALDQL  136 (234)
T ss_pred             HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HH---HHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHH
Confidence            35556788999999876665677777765444566555553  22   23467777654321 2444444 776532110


Q ss_pred             c--cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          111 E--LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       111 ~--Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .  .....||.|..+-+.                 .-...+|.-+..+|++||.|.+.
T Consensus       137 ~~~~~~~~fD~VfiDa~k-----------------~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADK-----------------PNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HhCCCCCCCCEEEECCCH-----------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence            0  013589999886432                 11236788888999999987763

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=81.90  E-value=21  Score=32.79  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEE-eecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SII-HGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~Vl-hgVDATkL~~~~~L  112 (421)
                      .+..+||=||-|.=.|+..|++..   ..++++-.+ .+.+ +   .++.++..   .|.  .|- ...|   +..    
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s-~~~i-~---~a~~~~~~---~~~~~~i~~~~~d---~~~----  123 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDIS-PQMV-E---EARERAPE---AGLAGNITFEVGD---LES----  123 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECC-HHHH-H---HHHHHHHh---cCCccCcEEEEcC---chh----
Confidence            346799999999888999998753   245554443 3332 2   13333322   222  222 2233   221    


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC---------------------
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA---------------------  171 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------------  171 (421)
                      ....||.|+.+..-.-+ ..+    .       +...++.+..++.  |.+.|+.....                     
T Consensus       124 ~~~~fD~v~~~~~l~~~-~~~----~-------~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~  189 (230)
T PRK07580        124 LLGRFDTVVCLDVLIHY-PQE----D-------AARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGGLFPGPSRTTR  189 (230)
T ss_pred             ccCCcCEEEEcchhhcC-CHH----H-------HHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhccccCCccCCCC
Confidence            13679999987552111 001    0       1233333334443  44444443211                     


Q ss_pred             --CcCcccHHHHHHhCCcEEEEEeeCCCC
Q 014642          172 --PFCKWHIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       172 --PY~sWnI~~LAa~aGL~L~~~~~F~~~  198 (421)
                        .++.-++..+.+.+||.+.+..++...
T Consensus       190 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  218 (230)
T PRK07580        190 IYPHREKGIRRALAAAGFKVVRTERISSG  218 (230)
T ss_pred             ccccCHHHHHHHHHHCCCceEeeeeccch
Confidence              122345778888999999998877643

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=81.59  E-value=45  Score=31.81  Aligned_cols=111  Identities=12%  Similarity=0.094  Sum_probs=59.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHH----HH---H-hCCCEEE-eecccCCcC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD----TL---K-KLGASII-HGVDATEMK  107 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~----~L---r-~~Gv~Vl-hgVDATkL~  107 (421)
                      +..+||.+|.|.=--++.||++   +.+|||.-+- ...+ ++- .++.++.    .+   + ..+..|- +-.|..++.
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S-~~Ai-~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELS-EIAV-EQF-FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCC-HHHH-HHH-HHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            4569999999999999999974   4566665332 2222 210 0011110    00   0 0111222 344555554


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEec
Q 014642          108 EHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHK  168 (421)
Q Consensus       108 ~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk  168 (421)
                      ..   ...+||.|+=.    +.        .+..+..+-..++++...+|+|+|. +.+|+.
T Consensus       108 ~~---~~~~fD~i~D~----~~--------~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       108 AA---DLGPVDAVYDR----AA--------LIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             cc---cCCCcCEEEec----hh--------hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            21   12346655321    10        1122455567899999999999997 556664

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=81.40  E-value=11  Score=37.09  Aligned_cols=96  Identities=17%  Similarity=0.313  Sum_probs=55.0

Q ss_pred             CCCeEEEEecCChhHH-HHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFS-FALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFS-lSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+++||+.|=|..-.. ..||++.| ...|++|...            .+.++.++++|+......+-.++.+... ...
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~------------~~~~~~a~~lGa~~vi~~~~~~~~~~~~-~~g  234 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS------------PRSLSLAREMGADKLVNPQNDDLDHYKA-EKG  234 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC------------HHHHHHHHHcCCcEEecCCcccHHHHhc-cCC
Confidence            5789999998766533 44567765 3467777543            1246677788986554322222222111 123


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .||.| |+.  +|.                 ..-+..+.++|+++|.|.+.
T Consensus       235 ~~D~v-id~--~G~-----------------~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        235 YFDVS-FEV--SGH-----------------PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             CCCEE-EEC--CCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence            47855 564  452                 02344566788999987654

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=81.20  E-value=3.7  Score=42.55  Aligned_cols=124  Identities=21%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             eccCCCCeE--EEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           33 MHYSSKHQI--LLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        33 ~~Yss~~rI--LLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      ..+..+.+|  +.-|=|=||+..|...   .+. |+|.-+....     |.-.++|+..=+-.+....+.-||..+....
T Consensus       184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~g---~~~-V~A~diNP~A-----~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~  254 (341)
T COG2520         184 ELVKEGETVLDMFAGVGPFSIPIAKKG---RPK-VYAIDINPDA-----VEYLKENIRLNKVEGRVEPILGDAREVAPEL  254 (341)
T ss_pred             hhhcCCCEEEEccCCcccchhhhhhcC---Cce-EEEEecCHHH-----HHHHHHHHHhcCccceeeEEeccHHHhhhcc
Confidence            334445554  3567788877766542   233 9998876422     1223445432222242335555777765432


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-CcCcc---cHHHHHHhCC
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-PFCKW---HIEELARKHS  186 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-PY~sW---nI~~LAa~aG  186 (421)
                          ..|||||.|.|+...                  .|...|..+++++|-||.=...-+ .-..|   .|...|...|
T Consensus       255 ----~~aDrIim~~p~~a~------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~  312 (341)
T COG2520         255 ----GVADRIIMGLPKSAH------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGG  312 (341)
T ss_pred             ----ccCCEEEeCCCCcch------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhcc
Confidence                789999999999653                  788889999999999998765432 11123   3444555665


Q ss_pred             c
Q 014642          187 L  187 (421)
Q Consensus       187 L  187 (421)
                      +
T Consensus       313 ~  313 (341)
T COG2520         313 Y  313 (341)
T ss_pred             C
Confidence            4

>PRK06202 hypothetical protein; Provisional

Probab=80.52  E-value=31  Score=32.41  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=45.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++... .+.+.-.|..|-..++.+.   +..+   +...++.+.. +|+..+..    ..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~---a~~~---~~~~~~~~~~-~~~~~l~~----~~  127 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF---ARAN---PRRPGVTFRQ-AVSDELVA----EG  127 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH---HHhc---cccCCCeEEE-Eecccccc----cC
Confidence            4567999998877777777876431 1223334445543333332   2222   2233555544 45655543    34


Q ss_pred             CcccEEEEcCC
Q 014642          115 RKFDRIIFNFP  125 (421)
Q Consensus       115 ~~FDrIIFNFP  125 (421)
                      ..||.|+.|+-
T Consensus       128 ~~fD~V~~~~~  138 (232)
T PRK06202        128 ERFDVVTSNHF  138 (232)
T ss_pred             CCccEEEECCe
Confidence            78999999975

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=80.33  E-value=29  Score=34.61  Aligned_cols=132  Identities=14%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=+|=|.=.||+.||+.   +..++|.-.+  ....+   .++.|++...-..+.+ ...|+.++...   ....|
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s--~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~---~~~~~  241 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP---GMQLTGIEIS--AEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA---QGEVP  241 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh---cCCCC
Confidence            468988888888888888874   2456665444  33322   3666765543223444 34577665321   12469


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                      |.||.|=|..|. +           ..++ ..+..    +.+.+-|+|+.....-  .-++..|   .||.+.+..+|| 
T Consensus       242 D~Vv~dPPr~G~-~-----------~~~~-~~l~~----~~~~~ivyvsc~p~t~--~rd~~~l---~~y~~~~~~~~D-  298 (315)
T PRK03522        242 DLVLVNPPRRGI-G-----------KELC-DYLSQ----MAPRFILYSSCNAQTM--AKDLAHL---PGYRIERVQLFD-  298 (315)
T ss_pred             eEEEECCCCCCc-c-----------HHHH-HHHHH----cCCCeEEEEECCcccc--hhHHhhc---cCcEEEEEEEec-
Confidence            999999998774 1           1111 11111    3555666666544332  1244444   699999999998 


Q ss_pred             CCCCCCcc
Q 014642          198 EDYPGYSN  205 (421)
Q Consensus       198 ~~YPGY~h  205 (421)
                       .||.=.|
T Consensus       299 -mFP~T~H  305 (315)
T PRK03522        299 -MFPHTAH  305 (315)
T ss_pred             -cCCCCCe
Confidence             5775443

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=80.28  E-value=15  Score=34.68  Aligned_cols=102  Identities=19%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=+|=|.=.++..|++.   +..+++.-+.  .++.+.   +..+..     ... +...|+..+.    +....
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s--~~~l~~---a~~~~~-----~~~-~~~~d~~~~~----~~~~~  103 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLS--PPMLAQ---ARQKDA-----ADH-YLAGDIESLP----LATAT  103 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhCC-----CCC-EEEcCcccCc----CCCCc
Confidence            3568999998887788888764   3466666443  222221   222211     112 2345666543    34568


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ||.|+-|++.--.   .|           +..++..+..+|+|+|.+.++....
T Consensus       104 fD~V~s~~~l~~~---~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        104 FDLAWSNLAVQWC---GN-----------LSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             EEEEEECchhhhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9999999875321   11           2467888889999999999986543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=80.20  E-value=11  Score=37.62  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=62.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=||=|.=++|.+||+.   +.+|+|.=..  ++..+ |  |  -+..+ +.|+.|=|  .+...... ...+.+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~s--e~~I~-~--A--k~ha~-e~gv~i~y--~~~~~edl-~~~~~~  124 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDAS--EKPIE-V--A--KLHAL-ESGVNIDY--RQATVEDL-ASAGGQ  124 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCC--hHHHH-H--H--HHhhh-hccccccc--hhhhHHHH-HhcCCC
Confidence            5679999999999999999986   3577765332  11111 0  0  01111 22444222  22222221 112479


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ||.|+.+=              +-.|-.=...|.++|.+|++|+|.+.++--+
T Consensus       125 FDvV~cmE--------------VlEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         125 FDVVTCME--------------VLEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             ccEEEEhh--------------HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            99999752              1123222446999999999999998887655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 50/411 (12%), Positives = 105/411 (25%), Gaps = 125/411 (30%)

Query: 15  KKEMS--FTEKDEKEEEK---WIMHYSSKHQI-LLVGEG---DFSFSFALSQKFGSASNI 65
           K+E+      KD         W +    +  +   V E    ++ F   L     +    
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQ 104

Query: 66  CASSLDSYETVV------------------KKFKEARSNLDTLKKLGASIIHG------- 100
            +     Y                      + + + R  L  L+     +I G       
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 101 VDATEMKEHSELSKRKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLR 158
             A ++    ++ + K D  IF  N             E +   + +++           
Sbjct: 165 WVALDVCLSYKV-QCKMDFKIFWLNL------KNCNSPETV---LEMLQKLLYQIDPNWT 214

Query: 159 PRGEVHVSHKTTAPFCKWHIEELAR----KHSLLRLDCVQFRKEDYPGYSNKKGAGSLCD 214
            R +   + K      +  +  L +    ++ LL L  VQ          N K       
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----------NAKAW----- 259

Query: 215 DYFPLGKCSTFKFGLYRARKGSKVMSDGGFIVKRTKAVQEI--PIQVQKRETDPFDWRCT 272
           + F L  C              K++     +  R K V +            D      T
Sbjct: 260 NAFNLS-C--------------KIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 273 NAKSATDMNEFRACVKFDGSGAGYPVREYPRFDSLVHPQT-----SFTRNAIDHPGYKRL 327
             +     +     +           ++ PR     +P+         R+ +    +   
Sbjct: 300 PDEV---KSLLLKYL-------DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNW 347

Query: 328 ALMGNSRFHNGCFNSSHTTLGRAVDDVGYLVPESLIPYE--RYYAEVAGFQ 376
             +   +          T +  ++          L P E  + +  ++ F 
Sbjct: 348 KHVNCDKL--------TTIIESSL--------NVLEPAEYRKMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.8
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.55
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.52
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.46
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.4
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.37
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.34
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.31
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.3
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.24
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.22
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.22
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.21
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.19
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.15
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.15
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.15
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.14
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.12
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.07
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.01
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.0
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.99
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.98
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.97
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.91
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.9
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.89
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.88
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.86
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.86
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.84
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.82
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.78
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.77
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.74
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.74
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.71
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.71
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.68
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.67
3cc8_A	230	Putative methyltransferase; structural genomics, j	96.66
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.62
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.61
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.61
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.6
3ocj_A	305	Putative exported protein; structural genomics, PS	96.57
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.56
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.53
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.49
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.49
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.49
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.47
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	96.44
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.43
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.41
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.35
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.35
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	96.29
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.28
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	96.28
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.25
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.24
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.24
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	96.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.22
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.21
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.19
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.16
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.15
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.15
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.15
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.14
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.13
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.1
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	96.05
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.0
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.0
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.98
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.98
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	95.96
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.96
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	95.94
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	95.92
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.85
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.85
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	95.84
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	95.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.76
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.76
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	95.75
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.73
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.71
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.69
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.68
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	95.67
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.66
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.64
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.6
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.57
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.56
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.55
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.54
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	95.54
1ws6_A	171	Methyltransferase; structural genomics, riken stru	95.5
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.48
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.41
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.4
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.39
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	95.37
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	95.37
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.35
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.34
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.3
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.3
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.29
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.27
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.26
2o07_A	304	Spermidine synthase; structural genomics, structur	95.22
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.21
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.19
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.18
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	95.15
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	95.11
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.04
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	94.93
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	94.91
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.88
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	94.83
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	94.81
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	94.74
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.7
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	94.66
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	94.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	94.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.46
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.46
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	94.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.38
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	94.32
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	94.32
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	94.3
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	94.27
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	94.22
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.21
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.19
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.08
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.03
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	94.0
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	93.97
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	93.91
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	93.77
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	93.69
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	93.66
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	93.61
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	93.6
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	93.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	93.48
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	93.48
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	93.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	93.44
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	93.42
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	93.41
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	93.3
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	93.3
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	93.26
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	93.22
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	93.12
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	93.1
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.94
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	92.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	92.89
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	92.87
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	92.87
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	92.85
2h00_A	254	Methyltransferase 10 domain containing protein; st	92.84
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	92.82
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	92.78
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	92.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	92.7
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	92.61
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	92.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	92.31
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	92.28
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	92.21
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	91.97
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	91.89
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	91.74
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	91.46
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	91.45
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	91.04
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	90.95
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	90.74
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	90.65
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	90.57
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	90.49
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.1
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	90.04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	89.72
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	89.71
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	89.33
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	89.07
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	88.76
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	88.75
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	88.38
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	88.28
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	87.93
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	87.37
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	86.32
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	86.04
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	85.36
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	84.65
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	84.54
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	83.86
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	83.32
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	83.09
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	83.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	82.86
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	82.68
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	82.05
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	81.1
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	80.06

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.80  E-value=0.00018  Score=62.35  Aligned_cols=156  Identities=10%  Similarity=0.056  Sum_probs=95.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..|++.++...+++|.-.+  ++..+   .++.|++...-..-.-+...|+.++...   ...
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~   92 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQ--DKAIA---NTTKKLTDLNLIDRVTLIKDGHQNMDKY---IDC   92 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSC--HHHHH---HHHHHHHHTTCGGGEEEECSCGGGGGGT---CCS
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCCeEEEECCHHHHhhh---ccC
Confidence            456799999999999999999988644567765544  33332   3555554432111134556687776532   237


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccH---HHHHH---hCCcEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHI---EELAR---KHSLLR  189 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI---~~LAa---~aGL~L  189 (421)
                      .||.|++|+|.......     .+..+......+++.+..+|+++|.+.+....+.+......   ....+   ..++.+
T Consensus        93 ~fD~v~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  167 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDH-----SISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIV  167 (197)
T ss_dssp             CEEEEEEEESBCTTSCT-----TCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEE
T ss_pred             CceEEEEcCCcccCccc-----ccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEE
Confidence            89999999977432111     11123334456999999999999999999877654332222   22222   235666


Q ss_pred             EEEeeCCCCCCCCCc
Q 014642          190 LDCVQFRKEDYPGYS  204 (421)
Q Consensus       190 ~~~~~F~~~~YPGY~  204 (421)
                      .....+....-|+|-
T Consensus       168 ~~~~~~~~~~~pp~~  182 (197)
T 3eey_A          168 QRTDFINQANCPPIL  182 (197)
T ss_dssp             EEEEETTCCSCCCEE
T ss_pred             EEEEeccCccCCCeE
Confidence            666555554555443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.72  E-value=0.00038  Score=66.94  Aligned_cols=146  Identities=18%  Similarity=0.205  Sum_probs=100.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..|++..+....|+|.-.+. . ..   ..+..|++.+.-.++.+ ..-|++++..    ...
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~-~-~l---~~a~~~~~~~g~~~v~~-~~~D~~~~~~----~~~  186 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE-N-RL---RETRLNLSRLGVLNVIL-FHSSSLHIGE----LNV  186 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH-H-HH---HHHHHHHHHHTCCSEEE-ESSCGGGGGG----GCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCH-H-HH---HHHHHHHHHhCCCeEEE-EECChhhccc----ccc
Confidence            4577999999999999999998875455777765542 2 22   23566766553334444 4558887653    235


Q ss_pred             cccEEEEcCCCCCCCC--C-c-----ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhCC
Q 014642          116 KFDRIIFNFPHAGFHG--K-E-----EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKHS  186 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G--k-E-----d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~aG  186 (421)
                      .||+|+.|-|..|..-  + .     .....+.....+-..++..+..+|+|+|.+.++-|+-.|- +.-.|..+.++.+
T Consensus       187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~  266 (315)
T 1ixk_A          187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD  266 (315)
T ss_dssp             CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred             cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCC
Confidence            7999999999877421  1 1     1223445556667899999999999999999988876654 4455667777888


Q ss_pred             cEEEE
Q 014642          187 LLRLD  191 (421)
Q Consensus       187 L~L~~  191 (421)
                      +.++.
T Consensus       267 ~~~~~  271 (315)
T 1ixk_A          267 VELLP  271 (315)
T ss_dssp             EEEEC
T ss_pred             CEEec
Confidence            77663

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.58  E-value=0.0005  Score=58.17  Aligned_cols=129  Identities=19%  Similarity=0.162  Sum_probs=90.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++.   +.+++++-.+  .++.+   .+..++     .++.++ ..|+.++.    +...
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~--~~~~~---~a~~~~-----~~~~~~-~~d~~~~~----~~~~  106 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLD--PILID---YAKQDF-----PEARWV-VGDLSVDQ----ISET  106 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHC-----TTSEEE-ECCTTTSC----CCCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCC--HHHHH---HHHHhC-----CCCcEE-EcccccCC----CCCC
Confidence            45779999999999999999986   3467776554  22222   122222     135443 44777653    3357


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      .||.|+.+.+-....           ...-+..++..+..+|+++|.+.++......+..-.+.++.+++|+.+.+..
T Consensus       107 ~~D~i~~~~~~~~~~-----------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  173 (195)
T 3cgg_A          107 DFDLIVSAGNVMGFL-----------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF  173 (195)
T ss_dssp             CEEEEEECCCCGGGS-----------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred             ceeEEEECCcHHhhc-----------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence            899999985544321           1122467888999999999999999888776777788889999999988774

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.55  E-value=0.00075  Score=59.81  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             ceeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcC
Q 014642           29 EKWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMK  107 (421)
Q Consensus        29 ~K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~  107 (421)
                      ..|...|.. +.+||=||=|.=.|+..||+.+. ..+++|.-.+ .+ ..+   .+..|+....-.++.+ ..-|+..+.
T Consensus        32 ~~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s-~~-~l~---~a~~~~~~~~~~~v~~-~~~d~~~~~  104 (214)
T 1yzh_A           32 AKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQ-KS-VLS---YALDKVLEVGVPNIKL-LWVDGSDLT  104 (214)
T ss_dssp             TTHHHHHTSCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESC-HH-HHH---HHHHHHHHHCCSSEEE-EECCSSCGG
T ss_pred             cCHHHHcCCCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcC-HH-HHH---HHHHHHHHcCCCCEEE-EeCCHHHHH
Confidence            356655654 67999999999999999998874 4577776554 22 222   3555655443223444 455887764


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCc
Q 014642          108 EHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSL  187 (421)
Q Consensus       108 ~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL  187 (421)
                      ..  +....||.|+.|||..-.+.+.      ...+.....|+..+..+|+++|.+++.... .++.. .+.++.+++|+
T Consensus       105 ~~--~~~~~~D~i~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~-~~~~~~~~~g~  174 (214)
T 1yzh_A          105 DY--FEDGEIDRLYLNFSDPWPKKRH------EKRRLTYKTFLDTFKRILPENGEIHFKTDN-RGLFE-YSLVSFSQYGM  174 (214)
T ss_dssp             GT--SCTTCCSEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHSCTTCEEEEEESC-HHHHH-HHHHHHHHHTC
T ss_pred             hh--cCCCCCCEEEEECCCCccccch------hhhccCCHHHHHHHHHHcCCCcEEEEEeCC-HHHHH-HHHHHHHHCCC
Confidence            32  3356799999999965321100      011223567899999999999999997532 22333 34455566789


Q ss_pred             EEEEEe
Q 014642          188 LRLDCV  193 (421)
Q Consensus       188 ~L~~~~  193 (421)
                      .+....
T Consensus       175 ~~~~~~  180 (214)
T 1yzh_A          175 KLNGVW  180 (214)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            887664

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.52  E-value=0.001  Score=58.23  Aligned_cols=139  Identities=16%  Similarity=0.236  Sum_probs=93.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++..+....+++.-.+  ++..+   .+..++....-.++. +...|+.++.    +..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~~~----~~~  104 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ--EEMVN---YAWEKVNKLGLKNVE-VLKSEENKIP----LPD  104 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESC--HHHHH---HHHHHHHHHTCTTEE-EEECBTTBCS----SCS
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHcCCCcEE-EEecccccCC----CCC
Confidence            3557799999999999999999987545566665443  22222   244444433222343 4455777654    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----------CcCcccHHHHHHh
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------PFCKWHIEELARK  184 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------PY~sWnI~~LAa~  184 (421)
                      ..||.|+.+...-..   ++           ...+++.+..+|+|+|.+.|+-....          .++...+..+.++
T Consensus       105 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          105 NTVDFIFMAFTFHEL---SE-----------PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             SCEEEEEEESCGGGC---SS-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             CCeeEEEeehhhhhc---CC-----------HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence            789999998764332   11           25788889999999999988754321          1345678889999


Q ss_pred             CCcEEEEEeeCCC
Q 014642          185 HSLLRLDCVQFRK  197 (421)
Q Consensus       185 aGL~L~~~~~F~~  197 (421)
                      +||..++...+..
T Consensus       171 ~Gf~~~~~~~~~~  183 (219)
T 3dh0_A          171 AGIRVGRVVEVGK  183 (219)
T ss_dssp             TTCEEEEEEEETT
T ss_pred             CCCEEEEEEeeCC
Confidence            9999999877653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.46  E-value=0.0011  Score=58.73  Aligned_cols=143  Identities=17%  Similarity=0.137  Sum_probs=90.3

Q ss_pred             CCCCeEEEEecC-ChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEG-DFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEG-DFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=+|=| .=.++..|++..  +.+++|+-.+. + ..+   .++.|++...- .+.++ .-|+..+..   +..
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~-~-~~~---~a~~~~~~~~~-~v~~~-~~d~~~~~~---~~~  121 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDE-E-FFE---YARRNIERNNS-NVRLV-KSNGGIIKG---VVE  121 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCH-H-HHH---HHHHHHHHTTC-CCEEE-ECSSCSSTT---TCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCH-H-HHH---HHHHHHHHhCC-CcEEE-eCCchhhhh---ccc
Confidence            467899999999 999999999886  45777776653 2 222   35556544322 35443 456654433   234


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHH------HhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIR------MHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL  188 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~------~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~  188 (421)
                      ..||.|+.|.|...... ++......      ....++..|++.+..+|+|+|.+.+.+..+. ...-.+.++.++.|+.
T Consensus       122 ~~fD~I~~npp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~  199 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKPL-GRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYS  199 (230)
T ss_dssp             SCEEEEEECCCCC----------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCE
T ss_pred             CceeEEEECCCCcCCcc-ccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCc
Confidence            78999999998765311 10000000      1224458899999999999999999765542 2334567788899997


Q ss_pred             EEEE
Q 014642          189 RLDC  192 (421)
Q Consensus       189 L~~~  192 (421)
                      +...
T Consensus       200 ~~~~  203 (230)
T 3evz_A          200 VKDI  203 (230)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.45  E-value=0.00079  Score=57.73  Aligned_cols=120  Identities=10%  Similarity=0.054  Sum_probs=75.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..|++.   +.+|+|.-.+  +++.+   .++.|++...-..+.++. -|+..+...   ...
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s--~~~l~---~a~~~~~~~~~~~v~~~~-~~~~~l~~~---~~~   88 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQ--EQALG---KTSQRLSDLGIENTELIL-DGHENLDHY---VRE   88 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESC--HHHHH---HHHHHHHHHTCCCEEEEE-SCGGGGGGT---CCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECC--HHHHH---HHHHHHHHcCCCcEEEEe-CcHHHHHhh---ccC
Confidence            45789999999999999999987   3467665443  33333   356666654333456665 566665433   257


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                      .||.|++|+|+... +.    ..+..+......+++.+..+|+|+|.+.|....+.+
T Consensus        89 ~fD~v~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  140 (185)
T 3mti_A           89 PIRAAIFNLGYLPS-AD----KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD  140 (185)
T ss_dssp             CEEEEEEEEC----------------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred             CcCEEEEeCCCCCC-cc----hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence            89999999876652 11    123334445567889999999999999999887654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.40  E-value=0.0011  Score=60.84  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=93.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=+|=|.=.+++.|++...  .+|+|.-.+.  +..+   .++.|+....-.+-.-+...|+.++...  +....
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~--~~~~---~a~~n~~~~~~~~~v~~~~~D~~~~~~~--~~~~~  119 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQE--RLAD---MAKRSVAYNQLEDQIEIIEYDLKKITDL--IPKER  119 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSH--HHHH---HHHHHHHHTTCTTTEEEECSCGGGGGGT--SCTTC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCH--HHHH---HHHHHHHHCCCcccEEEEECcHHHhhhh--hccCC
Confidence            678999999999999999998742  3677666553  2222   3666665433222234556688876542  34578


Q ss_pred             ccEEEEcCCCCCC--CCCc--ccHHHHHHh--HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEE
Q 014642          117 FDRIIFNFPHAGF--HGKE--EDDEVIRMH--MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRL  190 (421)
Q Consensus       117 FDrIIFNFPH~G~--~GkE--d~~~~I~~n--r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~  190 (421)
                      ||.||.|-|....  .+..  +..+.+..|  ...+..|++.|..+|+++|.+.+.+.   +...-.+..++++.|+...
T Consensus       120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~l~~~~~~~~  196 (259)
T 3lpm_A          120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PERLLDIIDIMRKYRLEPK  196 (259)
T ss_dssp             EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TTTHHHHHHHHHHTTEEEE
T ss_pred             ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HHHHHHHHHHHHHCCCceE
Confidence            9999999996542  1111  111122222  24467899999999999999999653   3344567778888999988


Q ss_pred             EEeeCC
Q 014642          191 DCVQFR  196 (421)
Q Consensus       191 ~~~~F~  196 (421)
                      +..+..
T Consensus       197 ~~~~v~  202 (259)
T 3lpm_A          197 RIQFVH  202 (259)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            776543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.39  E-value=0.0021  Score=58.59  Aligned_cols=145  Identities=13%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...+..+||=||=|.=.++..|++.  ...+++++-.+. + ..+   .++.+++...-.+-.-+...|+.++.    +.
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~-~-~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~  111 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLS-G-FID---IFNRNARQSGLQNRVTGIVGSMDDLP----FR  111 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCH-H-HHH---HHHHHHHHTTCTTTEEEEECCTTSCC----CC
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCH-H-HHH---HHHHHHHHcCCCcCcEEEEcChhhCC----CC
Confidence            3456789999999999999999987  244677765542 2 222   24344333211121334556777654    34


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC---CCC----cCcc----------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT---TAP----FCKW----------  176 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g~P----Y~sW----------  176 (421)
                      ...||.|+.+.+.--. +              ...+++.+..+|+|+|.+.|+-..   ..+    ...|          
T Consensus       112 ~~~fD~i~~~~~~~~~-~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (267)
T 3kkz_A          112 NEELDLIWSEGAIYNI-G--------------FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTI  176 (267)
T ss_dssp             TTCEEEEEESSCGGGT-C--------------HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEH
T ss_pred             CCCEEEEEEcCCceec-C--------------HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCH
Confidence            5789999998764321 1              246889999999999998887532   211    1234          


Q ss_pred             -cHHHHHHhCCcEEEEEeeCCCCCC-CCCc
Q 014642          177 -HIEELARKHSLLRLDCVQFRKEDY-PGYS  204 (421)
Q Consensus       177 -nI~~LAa~aGL~L~~~~~F~~~~Y-PGY~  204 (421)
                       .+.++.+++||.+++...+....| ..|.
T Consensus       177 ~~~~~~l~~aGf~~v~~~~~~~~~w~~~~~  206 (267)
T 3kkz_A          177 PNQVAKIHKAGYLPVATFILPENCWTDHYF  206 (267)
T ss_dssp             HHHHHHHHHTTEEEEEEEECCGGGTTTTTH
T ss_pred             HHHHHHHHHCCCEEEEEEECCHhHHHHHHH
Confidence             577888999999999998887666 5554

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.37  E-value=0.001  Score=59.23  Aligned_cols=135  Identities=17%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=+|=|.=.++..|++.++....+++.  |...+..+   .+..|++.+  .++.++ ..|+.+......+ .
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~---~~~~~~~~~--~~v~~~-~~d~~~~~~~~~~-~  141 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLR---ELVPIVEER--RNIVPI-LGDATKPEEYRAL-V  141 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHH---HHHHHHSSC--TTEEEE-ECCTTCGGGGTTT-C
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEE--ECCHHHHH---HHHHHHhcc--CCCEEE-EccCCCcchhhcc-c
Confidence            3467899999999999999999988654567665  43232222   233343322  355544 4577764321122 2


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----Cc---CcccHHHHHHhCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----PF---CKWHIEELARKHS  186 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----PY---~sWnI~~LAa~aG  186 (421)
                      ..||.|+.|.|+..                ....++..+..+|+|+|.+.++.....     |.   ....+.++ .++ 
T Consensus       142 ~~~D~v~~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-  203 (227)
T 1g8a_A          142 PKVDVIFEDVAQPT----------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-  203 (227)
T ss_dssp             CCEEEEEECCCSTT----------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-
T ss_pred             CCceEEEECCCCHh----------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-
Confidence            47999999988221                123567889999999999999864321     11   12356666 556 


Q ss_pred             cEEEEEeeCC
Q 014642          187 LLRLDCVQFR  196 (421)
Q Consensus       187 L~L~~~~~F~  196 (421)
                      |.+++...+.
T Consensus       204 f~~~~~~~~~  213 (227)
T 1g8a_A          204 FEVIERLNLE  213 (227)
T ss_dssp             SEEEEEEECT
T ss_pred             ceeeeEeccC
Confidence            9888887654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.34  E-value=0.00099  Score=59.83  Aligned_cols=148  Identities=14%  Similarity=0.248  Sum_probs=93.8

Q ss_pred             cceeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc
Q 014642           28 EEKWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM  106 (421)
Q Consensus        28 ~~K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL  106 (421)
                      ...|...|.. ..+||=||=|.=.++..||+.+. ..+++|.-.+  .+..+   .+..|++...-.++.++ ..|+.++
T Consensus        28 ~~~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s--~~~l~---~a~~~~~~~~~~nv~~~-~~d~~~l  100 (213)
T 2fca_A           28 KGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELF--KSVIV---TAVQKVKDSEAQNVKLL-NIDADTL  100 (213)
T ss_dssp             TTCHHHHHTSCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSC--HHHHH---HHHHHHHHSCCSSEEEE-CCCGGGH
T ss_pred             CCCHHHHcCCCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEec--hHHHH---HHHHHHHHcCCCCEEEE-eCCHHHH
Confidence            4467666764 56899999999999999998863 5678776554  22222   24555544322234444 4588876


Q ss_pred             CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      ...  +....||.|+.|||..-.+...      ...+.+...|++.+..+|+|+|.|++.... ..+..|-++.+. ++|
T Consensus       101 ~~~--~~~~~~d~v~~~~~~p~~~~~~------~~~rl~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~-~~g  170 (213)
T 2fca_A          101 TDV--FEPGEVKRVYLNFSDPWPKKRH------EKRRLTYSHFLKKYEEVMGKGGSIHFKTDN-RGLFEYSLKSFS-EYG  170 (213)
T ss_dssp             HHH--CCTTSCCEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHHTTSCEEEEEESC-HHHHHHHHHHHH-HHT
T ss_pred             Hhh--cCcCCcCEEEEECCCCCcCccc------cccccCcHHHHHHHHHHcCCCCEEEEEeCC-HHHHHHHHHHHH-HCC
Confidence            432  3456799999999854321110      012222468899999999999999987633 234555555554 458


Q ss_pred             cEEEEE
Q 014642          187 LLRLDC  192 (421)
Q Consensus       187 L~L~~~  192 (421)
                      +.+...
T Consensus       171 ~~~~~~  176 (213)
T 2fca_A          171 LLLTYV  176 (213)
T ss_dssp             CEEEEE
T ss_pred             Cccccc
Confidence            877654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.31  E-value=0.0025  Score=57.12  Aligned_cols=141  Identities=12%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...+..+||=||=|.=.++..|++..+  ..++++-.+  ....+   .+..++....-.+-.-+...|+.++.    +.
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~  111 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLF--PDFIE---IFNENAVKANCADRVKGITGSMDNLP----FQ  111 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECCTTSCS----SC
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECC--HHHHH---HHHHHHHHcCCCCceEEEECChhhCC----CC
Confidence            445678999999999999999999874  367666554  22222   23344332211121344566777664    34


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC---CCC----cCcc----------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT---TAP----FCKW----------  176 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g~P----Y~sW----------  176 (421)
                      ...||.|+.+....-. +              ...+++.+..+|+|+|.+.|+-..   ..+    ...|          
T Consensus       112 ~~~fD~v~~~~~l~~~-~--------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNI-G--------------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVI  176 (257)
T ss_dssp             TTCEEEEEEESCSCCC-C--------------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBH
T ss_pred             CCCEEEEEecChHhhc-C--------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCH
Confidence            5789999999543321 1              236888999999999999887532   111    1112          


Q ss_pred             -cHHHHHHhCCcEEEEEeeCCCCCC
Q 014642          177 -HIEELARKHSLLRLDCVQFRKEDY  200 (421)
Q Consensus       177 -nI~~LAa~aGL~L~~~~~F~~~~Y  200 (421)
                       .+.++.+++||..++...+....|
T Consensus       177 ~~~~~~l~~aGf~~v~~~~~~~~~w  201 (257)
T 3f4k_A          177 PTCIDKMERAGYTPTAHFILPENCW  201 (257)
T ss_dssp             HHHHHHHHHTTEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHCCCeEEEEEECChhhH
Confidence             456788899999999988887766

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.30  E-value=0.00053  Score=56.53  Aligned_cols=117  Identities=16%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc----c
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH----S  110 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~----~  110 (421)
                      ..+..+||=||-|.=.++..|++.++....+++.-.+.   +.+ .            .++.+ ...|+.++...    .
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~-~------------~~~~~-~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDP-I------------VGVDF-LQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCC-C------------TTEEE-EESCTTSHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---ccc-c------------CcEEE-EEcccccchhhhhhhc
Confidence            45677999999999999999999886556888887665   111 1            24444 34577765310    0


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      .+....||.|+.|.|.-.. +..  ......+..+...+++.+..+|+++|.+.++.....
T Consensus        83 ~~~~~~~D~i~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           83 RVGDSKVQVVMSDMAPNMS-GTP--AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCC-SCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             cCCCCceeEEEECCCcccc-CCC--ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            0345789999999985432 111  122334456678999999999999999999876653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.24  E-value=0.0033  Score=61.54  Aligned_cols=131  Identities=16%  Similarity=0.132  Sum_probs=83.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC-cCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE-MKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk-L~~~~~Lk~~  115 (421)
                      +..+||=|| |+=.++..|++.. ....+++.-.+ .+.+ +   -+++|++.+.-..+.++.+ |+.+ |...   ...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~-~~~l-~---~a~~~~~~~g~~~v~~~~~-D~~~~l~~~---~~~  240 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDID-ERLT-K---FIEKAANEIGYEDIEIFTF-DLRKPLPDY---ALH  240 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSC-HHHH-H---HHHHHHHHHTCCCEEEECC-CTTSCCCTT---TSS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECC-HHHH-H---HHHHHHHHcCCCCEEEEEC-hhhhhchhh---ccC
Confidence            467999999 9999999998763 23455554443 3333 2   3666766543113555444 8877 5321   135


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeE-EEEecC--CCCcCcccHHHHHH-hCCcEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEV-HVSHKT--TAPFCKWHIEELAR-KHSLLRLD  191 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeI-HVTLk~--g~PY~sWnI~~LAa-~aGL~L~~  191 (421)
                      .||.||.|-|....              . +..|+..|..+|+|+|.+ .++...  +.+-..+.+.++.. +.|+.+..
T Consensus       241 ~fD~Vi~~~p~~~~--------------~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  305 (373)
T 2qm3_A          241 KFDTFITDPPETLE--------------A-IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITD  305 (373)
T ss_dssp             CBSEEEECCCSSHH--------------H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred             CccEEEECCCCchH--------------H-HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhh
Confidence            79999999884321              1 378999999999999954 555554  32211156667776 88887765


Q ss_pred             Ee
Q 014642          192 CV  193 (421)
Q Consensus       192 ~~  193 (421)
                      ..
T Consensus       306 ~~  307 (373)
T 2qm3_A          306 II  307 (373)
T ss_dssp             EE
T ss_pred             hh
Confidence            43

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.22  E-value=0.00075  Score=64.53  Aligned_cols=146  Identities=13%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeecccCCcCcccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK----KLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr----~~Gv~VlhgVDATkL~~~~~  111 (421)
                      .+..+||.||=|+=.++..|++.. ....|++.-.|.  ++.+   -+++++..+.    ...+.++ .-|+.++...  
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~--~~i~---~a~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~--  164 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDG--EVME---QSKQHFPQISRSLADPRATVR-VGDGLAFVRQ--  164 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEE-ESCHHHHHHS--
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCH--HHHH---HHHHHhHHhhcccCCCcEEEE-ECcHHHHHHh--
Confidence            356799999999999999999864 345787777663  2222   2344444432    2235554 3476654221  


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHH-HHHHHhhHhccCCCCeEEEEecCC--CCcCcccHHHHHHhCCcE
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV-EGFFRNASGMLRPRGEVHVSHKTT--APFCKWHIEELARKHSLL  188 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL-~~FF~SA~~lL~~~GeIHVTLk~g--~PY~sWnI~~LAa~aGL~  188 (421)
                      ....+||.||.|.|....  .         ...|. ..||+.+..+|+|+|.+.+.....  .+...+.+.+..++.||.
T Consensus       165 ~~~~~fDvIi~d~~~~~~--~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~  233 (304)
T 3bwc_A          165 TPDNTYDVVIIDTTDPAG--P---------ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA  233 (304)
T ss_dssp             SCTTCEEEEEEECC--------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred             ccCCceeEEEECCCCccc--c---------chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence            124789999999876431  0         12222 689999999999999998875321  112346677778888988


Q ss_pred             EEEEeeCCCCCCC
Q 014642          189 RLDCVQFRKEDYP  201 (421)
Q Consensus       189 L~~~~~F~~~~YP  201 (421)
                      .++........||
T Consensus       234 ~v~~~~~~vP~yp  246 (304)
T 3bwc_A          234 SVQYALMHVPTYP  246 (304)
T ss_dssp             EEEEEECCCTTST
T ss_pred             cEEEEEeeccccc
Confidence            7776555433343

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.22  E-value=0.00049  Score=64.38  Aligned_cols=149  Identities=17%  Similarity=0.153  Sum_probs=93.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..|++..+....|+|.-.+. +.+ +   .++.|++.+.-.++.+ ..-|++++.........
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~-~~l-~---~~~~~~~~~g~~~v~~-~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK-TRT-K---ALKSNINRMGVLNTII-INADMRKYKDYLLKNEI  155 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCH-HHH-H---HHHHHHHHTTCCSEEE-EESCHHHHHHHHHHTTC
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCH-HHH-H---HHHHHHHHhCCCcEEE-EeCChHhcchhhhhccc
Confidence            4577999999998889999998765445787766542 222 2   3555655433223444 44587776432110246


Q ss_pred             cccEEEEcCCCCCCCCC---c--ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHH-HHhCCcE
Q 014642          116 KFDRIIFNFPHAGFHGK---E--EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEEL-ARKHSLL  188 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~Gk---E--d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~L-Aa~aGL~  188 (421)
                      .||+|+.|-|..|. |.   .  .....+.....+...++..|..+|+|+|.+.++.++-.|- +...|..+ .+..++.
T Consensus       156 ~fD~Vl~d~Pcs~~-g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~  234 (274)
T 3ajd_A          156 FFDKILLDAPCSGN-IIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVE  234 (274)
T ss_dssp             CEEEEEEEECCC-------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEE
T ss_pred             cCCEEEEcCCCCCC-cccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcE
Confidence            79999999999884 21   0  0111222233456789999999999999999999987665 44555553 4556777


Q ss_pred             EEE
Q 014642          189 RLD  191 (421)
Q Consensus       189 L~~  191 (421)
                      ++.
T Consensus       235 ~~~  237 (274)
T 3ajd_A          235 LII  237 (274)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.21  E-value=0.0017  Score=58.22  Aligned_cols=130  Identities=13%  Similarity=0.161  Sum_probs=87.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..+..+||-+|=|.=.++..|++.++.+.++++.-.+  ++..+   .++.|++.. ....+. +...|+.++    .+.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~---~a~~~~~~~~g~~~v~-~~~~d~~~~----~~~  163 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR--PHHLA---QAERNVRAFWQVENVR-FHLGKLEEA----ELE  163 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHH---HHHHHHHHHCCCCCEE-EEESCGGGC----CCC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHhcCCCCEE-EEECchhhc----CCC
Confidence            3567899999999999999999987655677776554  22222   355555543 212233 344577665    133


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...||.|+.|.|..                   ..++..+..+|+++|.+.+......  ....+.+..++.|+...+..
T Consensus       164 ~~~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          164 EAAYDGVALDLMEP-------------------WKVLEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             TTCEEEEEEESSCG-------------------GGGHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEEEEEE
T ss_pred             CCCcCEEEECCcCH-------------------HHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceEEEE
Confidence            46899999987643                   2577888999999999998875431  23455556667888877665


Q ss_pred             eC
Q 014642          194 QF  195 (421)
Q Consensus       194 ~F  195 (421)
                      ..
T Consensus       223 ~~  224 (258)
T 2pwy_A          223 EV  224 (258)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.19  E-value=0.0057  Score=56.95  Aligned_cols=138  Identities=12%  Similarity=0.074  Sum_probs=89.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~L  112 (421)
                      .++.+||=||=|.=.++..|++.++  .++++.-++ .+.+ +   .++.++.   ..|.   .-+..-|+.++      
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s-~~~~-~---~a~~~~~---~~~~~~~v~~~~~d~~~~------  134 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLS-ENQY-A---HDKAMFD---EVDSPRRKEVRIQGWEEF------  134 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECC-HHHH-H---HHHHHHH---HSCCSSCEEEEECCGGGC------
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECC-HHHH-H---HHHHHHH---hcCCCCceEEEECCHHHc------
Confidence            4677999999999999999999885  567776654 2222 2   2444433   3342   22344577665      


Q ss_pred             ccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC------------------
Q 014642          113 SKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP------------------  172 (421)
Q Consensus       113 k~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------  172 (421)
                       ...||.|+.+..  |+...  ++.     ...+-+..+|+.+..+|+|+|.+.|.......                  
T Consensus       135 -~~~fD~v~~~~~~~~~~d~--~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~  206 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADG--AGD-----AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRF  206 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCC--SSC-----CCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHH
T ss_pred             -CCCccEEEEcchHHhcCcc--ccc-----cchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccch
Confidence             478999999854  44211  000     00122468899999999999998887643211                  


Q ss_pred             --------------cCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          173 --------------FCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       173 --------------Y~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                                    .+.-.+..+++++||.+++...+..
T Consensus       207 ~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          207 IKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             HHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence                          0111567788889999998877654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.17  E-value=0.001  Score=58.30  Aligned_cols=135  Identities=12%  Similarity=0.050  Sum_probs=90.7

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +....+..+||=||=|.=.++..|++.   +.++++.-.+  .++.+   .+..++      ++.+. ..|+.++.    
T Consensus        38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~------~~~~~-~~d~~~~~----   98 (211)
T 3e23_A           38 LGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGS--PELAA---EASRRL------GRPVR-TMLFHQLD----   98 (211)
T ss_dssp             HTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHH------TSCCE-ECCGGGCC----
T ss_pred             HHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCC--HHHHH---HHHHhc------CCceE-EeeeccCC----
Confidence            344556789999999999999999986   3366665443  22222   133332      44433 45666664    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC------------cCcccHH
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP------------FCKWHIE  179 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------Y~sWnI~  179 (421)
                       ....||.|+.++...-.            ...-+..+++.+..+|+|+|.+.|+...+.+            ++.-.+.
T Consensus        99 -~~~~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (211)
T 3e23_A           99 -AIDAYDAVWAHACLLHV------------PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLR  165 (211)
T ss_dssp             -CCSCEEEEEECSCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHH
T ss_pred             -CCCcEEEEEecCchhhc------------CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHH
Confidence             35789999998643221            1122467888999999999999999876542            2334677


Q ss_pred             HHHHhCC-cEEEEEeeCCCC
Q 014642          180 ELARKHS-LLRLDCVQFRKE  198 (421)
Q Consensus       180 ~LAa~aG-L~L~~~~~F~~~  198 (421)
                      .+.+++| |.+++.......
T Consensus       166 ~~l~~aG~f~~~~~~~~~~~  185 (211)
T 3e23_A          166 ARYAEAGTWASVAVESSEGK  185 (211)
T ss_dssp             HHHHHHCCCSEEEEEEEEEE
T ss_pred             HHHHhCCCcEEEEEEeccCC
Confidence            8889999 999988765543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.15  E-value=0.0028  Score=54.91  Aligned_cols=139  Identities=15%  Similarity=0.143  Sum_probs=85.5

Q ss_pred             eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           31 WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        31 ~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      ++....++ +||=||=|.=.++..|++.   +.++++.-.+  ++..+   .+..++.... .++. +...|+.++.   
T Consensus        24 ~~~~~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~-~~~~d~~~~~---   89 (202)
T 2kw5_A           24 VANQIPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQS--SVGLA---KAKQLAQEKG-VKIT-TVQSNLADFD---   89 (202)
T ss_dssp             HHHHSCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSS--HHHHH---HHHHHHHHHT-CCEE-EECCBTTTBS---
T ss_pred             HHHhCCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECC--HHHHH---HHHHHHHhcC-CceE-EEEcChhhcC---
Confidence            34445566 9999999999999999876   3366666544  22222   2333433221 1333 3345777653   


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC--------CC---cCcccHH
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT--------AP---FCKWHIE  179 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--------~P---Y~sWnI~  179 (421)
                       +....||.|+.++.|..              ..-...+++.+..+|+|+|.+.++....        .|   ...+...
T Consensus        90 -~~~~~fD~v~~~~~~~~--------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (202)
T 2kw5_A           90 -IVADAWEGIVSIFCHLP--------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLE  154 (202)
T ss_dssp             -CCTTTCSEEEEECCCCC--------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHH
T ss_pred             -CCcCCccEEEEEhhcCC--------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHH
Confidence             34578999999988763              1124578888999999999999886432        12   2233333


Q ss_pred             HHHHhC-CcEEEEEeeCCCC
Q 014642          180 ELARKH-SLLRLDCVQFRKE  198 (421)
Q Consensus       180 ~LAa~a-GL~L~~~~~F~~~  198 (421)
                      ++.+.. ||.++....+...
T Consensus       155 ~l~~~l~Gf~v~~~~~~~~~  174 (202)
T 2kw5_A          155 TLQSELPSLNWLIANNLERN  174 (202)
T ss_dssp             HHHHHCSSSCEEEEEEEEEE
T ss_pred             HHHHHhcCceEEEEEEEEee
Confidence            332221 8887777665543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.15  E-value=0.0018  Score=65.34  Aligned_cols=149  Identities=12%  Similarity=0.104  Sum_probs=96.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++.+||=+|=|.=.++..|++..+....|+|.-.+.  ...   ..+..|++.+.-.++. +...|++++...  +..
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~--~~l---~~~~~~~~~~g~~~v~-~~~~D~~~~~~~--~~~  328 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDK--MRM---KRLKDFVKRMGIKIVK-PLVKDARKAPEI--IGE  328 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH--HHH---HHHHHHHHHTTCCSEE-EECSCTTCCSSS--SCS
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCH--HHH---HHHHHHHHHcCCCcEE-EEEcChhhcchh--hcc
Confidence            34577999999999999999998875435787765552  222   2355565543222333 445688877532  334


Q ss_pred             CcccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc-cHHHH-HHh
Q 014642          115 RKFDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW-HIEEL-ARK  184 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW-nI~~L-Aa~  184 (421)
                      ..||+|+.|-|..|..-  + .+     ....+.....+-..++..+..+|+|||.+.++-|+-.|...- .|..+ .+.
T Consensus       329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~  408 (450)
T 2yxl_A          329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH  408 (450)
T ss_dssp             SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence            67999999999988411  1 11     011233344455788999999999999999998887766444 44554 444


Q ss_pred             CCcEEEE
Q 014642          185 HSLLRLD  191 (421)
Q Consensus       185 aGL~L~~  191 (421)
                      .++.+..
T Consensus       409 ~~~~~~~  415 (450)
T 2yxl_A          409 PEFKLVP  415 (450)
T ss_dssp             SSCEECC
T ss_pred             CCCEEee
Confidence            4777654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.15  E-value=0.0011  Score=61.51  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++.+|++.++ ..+++|+-.+  +...+   -++.|++.+.-..+.++ .-|+.+.     +...
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s--~~~l~---~a~~n~~~~~~~~v~~~-~~d~~~~-----~~~~  175 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRM--PDAVS---LAQRNAQHLAIKNIHIL-QSDWFSA-----LAGQ  175 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSS--HHHHH---HHHHHHHHHTCCSEEEE-CCSTTGG-----GTTC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEEE-Ecchhhh-----cccC
Confidence            4567999999999999999998774 4577776554  22222   35667665532234443 3466542     2246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHh------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMH------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR  183 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~n------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa  183 (421)
                      .||.||.|.|..+.. .......+..|            -..+..++..+..+|+++|.+.+.+..   ...-.+.++.+
T Consensus       176 ~fD~Iv~npPy~~~~-~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l~  251 (276)
T 2b3t_A          176 QFAMIVSNPPYIDEQ-DPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAFI  251 (276)
T ss_dssp             CEEEEEECCCCBCTT-CHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHHH
T ss_pred             CccEEEECCCCCCcc-ccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHHH
Confidence            799999999988741 11000001111            145678999999999999999987532   34456777888


Q ss_pred             hCCcEEEE
Q 014642          184 KHSLLRLD  191 (421)
Q Consensus       184 ~aGL~L~~  191 (421)
                      ++|+..++
T Consensus       252 ~~Gf~~v~  259 (276)
T 2b3t_A          252 LAGYHDVE  259 (276)
T ss_dssp             HTTCTTCC
T ss_pred             HCCCcEEE
Confidence            88886443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.14  E-value=0.0031  Score=59.47  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=95.4

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +..++++||=+|=|.=.|+..||+..|..-.|+|--+.  ++..+   .+.++   .++.+-.+..-.|+........ .
T Consensus        74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s--~~~~~---~l~~~---a~~~~ni~~V~~d~~~p~~~~~-~  144 (233)
T 4df3_A           74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA--PRVMR---DLLTV---VRDRRNIFPILGDARFPEKYRH-L  144 (233)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECC--HHHHH---HHHHH---STTCTTEEEEESCTTCGGGGTT-T
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCC--HHHHH---HHHHh---hHhhcCeeEEEEeccCcccccc-c
Confidence            45678999999999999999999998866678875443  33332   13222   2334433333457777665433 3


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------Cc-CcccHHHHHHhCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------PF-CKWHIEELARKHS  186 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY-~sWnI~~LAa~aG  186 (421)
                      ...+|.|+-++||.+.                ...++.+|..+|+|+|.+.|.++...      |- ...+..+.-+++|
T Consensus       145 ~~~vDvVf~d~~~~~~----------------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~G  208 (233)
T 4df3_A          145 VEGVDGLYADVAQPEQ----------------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGG  208 (233)
T ss_dssp             CCCEEEEEECCCCTTH----------------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTT
T ss_pred             cceEEEEEEeccCChh----------------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCC
Confidence            4679999999998862                13578899999999999999886542      11 1123444556789


Q ss_pred             cEEEEEeeCCC
Q 014642          187 LLRLDCVQFRK  197 (421)
Q Consensus       187 L~L~~~~~F~~  197 (421)
                      |.+.+...+++
T Consensus       209 F~l~e~i~L~p  219 (233)
T 4df3_A          209 LEIKDVVHLDP  219 (233)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEccCC
Confidence            99999988765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.12  E-value=0.006  Score=55.99  Aligned_cols=129  Identities=17%  Similarity=0.172  Sum_probs=84.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeecccCCcCcccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG----ASIIHGVDATEMKEHSE  111 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATkL~~~~~  111 (421)
                      .++.+||=||=|.=.++..|++.++  .++++...+. +.+ +   .+..+   +++.|    +.+ ...|+.++.    
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~-~~~-~---~a~~~---~~~~~~~~~~~~-~~~d~~~~~----  127 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK-NQA-N---HVQQL---VANSENLRSKRV-LLAGWEQFD----  127 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH-HHH-H---HHHHH---HHTCCCCSCEEE-EESCGGGCC----
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCH-HHH-H---HHHHH---HHhcCCCCCeEE-EECChhhCC----
Confidence            4567999999999999999998775  3676665542 222 2   13333   33333    333 344665542    


Q ss_pred             cccCcccEEEEcC--CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----------C-------
Q 014642          112 LSKRKFDRIIFNF--PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------P-------  172 (421)
Q Consensus       112 Lk~~~FDrIIFNF--PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------P-------  172 (421)
                         ..||.|+.+.  -|++.   ++           ...+|+.+..+|+|+|.+.|+.....          |       
T Consensus       128 ---~~fD~v~~~~~l~~~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (287)
T 1kpg_A          128 ---EPVDRIVSIGAFEHFGH---ER-----------YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR  190 (287)
T ss_dssp             ---CCCSEEEEESCGGGTCT---TT-----------HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHH
T ss_pred             ---CCeeEEEEeCchhhcCh---HH-----------HHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccc
Confidence               6799999884  45542   11           35788899999999999888653321          1       


Q ss_pred             ---------------cCcccHHHHHHhCCcEEEEEeeCC
Q 014642          173 ---------------FCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       173 ---------------Y~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                                     ++.-.+..+.+++||.+++...+.
T Consensus       191 ~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          191 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             HHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             hhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence                           122356677888999998887654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.07  E-value=0.0068  Score=53.66  Aligned_cols=131  Identities=16%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||=|.=.++..|++.   +.++++.-.+  ..+.+.   +..+.   ...++. +...|+.++.    +...
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~~---a~~~~---~~~~~~-~~~~d~~~~~----~~~~  115 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDIS--EVMIQK---GKERG---EGPDLS-FIKGDLSSLP----FENE  115 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHHH---HHTTT---CBTTEE-EEECBTTBCS----SCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECC--HHHHHH---HHhhc---ccCCce-EEEcchhcCC----CCCC
Confidence            45779999999999999999987   3467666443  222221   11111   122343 4456777663    3467


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-------------------CcCcc
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-------------------PFCKW  176 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------------------PY~sW  176 (421)
                      .||.|+.+...--.   .+           ...+++.+..+|+|+|.+.|+.....                   .++.+
T Consensus       116 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (242)
T 3l8d_A          116 QFEAIMAINSLEWT---EE-----------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPW  181 (242)
T ss_dssp             CEEEEEEESCTTSS---SC-----------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHH
T ss_pred             CccEEEEcChHhhc---cC-----------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHH
Confidence            89999987653322   11           13678889999999999999874321                   13445


Q ss_pred             cHHHHHHhCCcEEEEEeeCC
Q 014642          177 HIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       177 nI~~LAa~aGL~L~~~~~F~  196 (421)
                      .+..+.+++||.+++...+.
T Consensus       182 ~~~~~l~~~Gf~~~~~~~~~  201 (242)
T 3l8d_A          182 EFEQLVKEQGFKVVDGIGVY  201 (242)
T ss_dssp             HHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHcCCEEEEeeccc
Confidence            78999999999999987663

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.01  E-value=0.004  Score=56.00  Aligned_cols=136  Identities=15%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||=|.=.++..|++..+ ...++|.-.+. +.+ +   .+..|.+..  .++.+ ..-|+........+. 
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~-~~~-~---~a~~~~~~~--~~v~~-~~~d~~~~~~~~~~~-  141 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAP-RIM-R---ELLDACAER--ENIIP-ILGDANKPQEYANIV-  141 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCH-HHH-H---HHHHHTTTC--TTEEE-EECCTTCGGGGTTTS-
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCH-HHH-H---HHHHHhhcC--CCeEE-EECCCCCcccccccC-
Confidence            34677999999999999999999876 45677765542 222 1   233343222  23333 345777633222233 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-CCc-------CcccHHHHHHhCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-APF-------CKWHIEELARKHS  186 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~PY-------~sWnI~~LAa~aG  186 (421)
                      ..||.|+.++|..+                ....+++.+..+|+|+|.+.|+++.. .+.       ..-.+. +.+++|
T Consensus       142 ~~~D~v~~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~G  204 (230)
T 1fbn_A          142 EKVDVIYEDVAQPN----------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGG  204 (230)
T ss_dssp             CCEEEEEECCCSTT----------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHT
T ss_pred             ccEEEEEEecCChh----------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCC
Confidence            67999996655433                13467888999999999999985431 111       113444 556789


Q ss_pred             cEEEEEeeCCC
Q 014642          187 LLRLDCVQFRK  197 (421)
Q Consensus       187 L~L~~~~~F~~  197 (421)
                      |.+.+..++++
T Consensus       205 f~~~~~~~~~~  215 (230)
T 1fbn_A          205 FKIVDEVDIEP  215 (230)
T ss_dssp             EEEEEEEECTT
T ss_pred             CEEEEEEccCC
Confidence            99998877653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.00  E-value=0.0023  Score=64.19  Aligned_cols=147  Identities=15%  Similarity=0.058  Sum_probs=94.7

Q ss_pred             cccceeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccC
Q 014642           26 KEEEKWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDAT  104 (421)
Q Consensus        26 ~~~~K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDAT  104 (421)
                      ..+..++..+.. +.+||=+|=|.=.||+.+|+. | + .|  |+.|..+...+   .++.|++.. .....+. .-|+.
T Consensus       202 r~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~-g-a-~V--~avDis~~al~---~a~~n~~~n-g~~~~~~-~~D~~  271 (393)
T 4dmg_A          202 RENRRLFEAMVRPGERVLDVYSYVGGFALRAARK-G-A-YA--LAVDKDLEALG---VLDQAALRL-GLRVDIR-HGEAL  271 (393)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHT-T-C-EE--EEEESCHHHHH---HHHHHHHHH-TCCCEEE-ESCHH
T ss_pred             HHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHc-C-C-eE--EEEECCHHHHH---HHHHHHHHh-CCCCcEE-EccHH
Confidence            334566777776 889999999999999999985 2 3 34  45564333333   366676543 2233444 55666


Q ss_pred             CcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC-cc--cHHHH
Q 014642          105 EMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC-KW--HIEEL  181 (421)
Q Consensus       105 kL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~-sW--nI~~L  181 (421)
                      ++-..  +... ||.||.|-|.... ++.    .+..-......++..|..+|+|+|.+++..+...+.. .|  .|.+.
T Consensus       272 ~~l~~--~~~~-fD~Ii~dpP~f~~-~~~----~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a  343 (393)
T 4dmg_A          272 PTLRG--LEGP-FHHVLLDPPTLVK-RPE----ELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRA  343 (393)
T ss_dssp             HHHHT--CCCC-EEEEEECCCCCCS-SGG----GHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHH--hcCC-CCEEEECCCcCCC-CHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            54222  1334 9999999997663 333    2444455667788999999999999998888876532 32  34456


Q ss_pred             HHhCCcEEE
Q 014642          182 ARKHSLLRL  190 (421)
Q Consensus       182 Aa~aGL~L~  190 (421)
                      +.++|..+.
T Consensus       344 ~~~~g~~~~  352 (393)
T 4dmg_A          344 AADLGRRLR  352 (393)
T ss_dssp             HHHHTCCEE
T ss_pred             HHHhCCeEE
Confidence            666665443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.99  E-value=0.0052  Score=53.26  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=||=|.=.++..|++.   +.+++++-++  +.+          ++..++.+...+...|+.++.........+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR---GIEAVGVDGD--RTL----------VDAARAAGAGEVHLASYAQLAEAKVPVGKD  116 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHH----------HHHHHHTCSSCEEECCHHHHHTTCSCCCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCC--HHH----------HHHHHHhcccccchhhHHhhcccccccCCC
Confidence            4579999999999999999987   3467665444  222          222233333334556777764443334567


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC------------------------
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP------------------------  172 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------------  172 (421)
                      ||.|+.++... .   ++           ...+++.+..+|+|+|.+.|+......                        
T Consensus       117 fD~v~~~~~l~-~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (227)
T 3e8s_A          117 YDLICANFALL-H---QD-----------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQP  181 (227)
T ss_dssp             EEEEEEESCCC-S---SC-----------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCC
T ss_pred             ccEEEECchhh-h---hh-----------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCccc
Confidence            99999998766 2   21           136788899999999999998643210                        


Q ss_pred             -----cCcccHHHHHHhCCcEEEEEee
Q 014642          173 -----FCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       173 -----Y~sWnI~~LAa~aGL~L~~~~~  194 (421)
                           ++.-++..+.+++||.+++...
T Consensus       182 ~~~~~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          182 MPWYFRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             EEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ceEEEecHHHHHHHHHHcCCeEEEEec
Confidence                 0122466788999999998765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.98  E-value=0.0021  Score=61.97  Aligned_cols=127  Identities=14%  Similarity=0.140  Sum_probs=84.9

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ....+.+||=+|=|-=.||+.+|+. | +..|+|.-.+.. .    +..+++|++...=.+-...+.-||.++..     
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~avD~np~-a----~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-----  189 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPY-T----FKFLVENIHLNKVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEEECCCHH-H----HHHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEEEECCHH-H----HHHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence            3456889998888888888888865 3 457887666532 1    23466777654333434567789887642     


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-CCcCccc---HHHHHHhCCcEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-APFCKWH---IEELARKHSLLR  189 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~PY~sWn---I~~LAa~aGL~L  189 (421)
                      ...||+||.|-|+...                  .|+..|..+|++||-||+-.... .-...|.   ++++++..|+.+
T Consensus       190 ~~~~D~Vi~~~p~~~~------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v  251 (278)
T 3k6r_A          190 ENIADRILMGYVVRTH------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV  251 (278)
T ss_dssp             CSCEEEEEECCCSSGG------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred             ccCCCEEEECCCCcHH------------------HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence            4679999999997641                  47778889999999998853321 1123343   456788888765


Q ss_pred             E
Q 014642          190 L  190 (421)
Q Consensus       190 ~  190 (421)
                      .
T Consensus       252 ~  252 (278)
T 3k6r_A          252 E  252 (278)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.97  E-value=0.0018  Score=60.78  Aligned_cols=126  Identities=11%  Similarity=0.042  Sum_probs=84.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.||+.||+...  ..++|.-.+  .+..+   .++.|++...-.+..-+..-|+.++..     ..
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s--~~~~~---~a~~n~~~n~~~~~v~~~~~D~~~~~~-----~~  191 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKD--PYTFK---FLVENIHLNKVEDRMSAYNMDNRDFPG-----EN  191 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCC--HHHHH---HHHHHHHHTTCTTTEEEECSCTTTCCC-----CS
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECC--HHHHH---HHHHHHHHcCCCceEEEEECCHHHhcc-----cC
Confidence            3478999999998899999998742  246555443  33332   355665532222223366678887654     57


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--Cc--CcccHHHHHHhCCcEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--PF--CKWHIEELARKHSLLRLD  191 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--PY--~sWnI~~LAa~aGL~L~~  191 (421)
                      .||.|+.|.|...                  ..|+..+..+|+|+|.+++..+...  ..  ..-.+.+.++++|+.+..
T Consensus       192 ~fD~Vi~~~p~~~------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          192 IADRILMGYVVRT------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             CEEEEEECCCSSG------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             CccEEEECCchhH------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence            8999999998321                  3577788889999999999776531  11  123567788899998776

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.91  E-value=0.019  Score=51.89  Aligned_cols=142  Identities=18%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++.+  +.++++.-.+. +.+ +   .+..++....-. .+. +...|+.++.    +..
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~-~~~-~---~a~~~~~~~~~~~~~~-~~~~d~~~~~----~~~  127 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISR-PQV-N---QANARATAAGLANRVT-FSYADAMDLP----FED  127 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCH-HHH-H---HHHHHHHHTTCTTTEE-EEECCTTSCC----SCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCH-HHH-H---HHHHHHHhcCCCcceE-EEECccccCC----CCC
Confidence            467899999999999999999876  35677765542 222 2   133333221111 233 3445777753    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-CC---------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-AP---------------------  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~P---------------------  172 (421)
                      ..||.|+.+...--.   .+           ...+|+.+..+|+|+|.+.|+-... .+                     
T Consensus       128 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T 3bus_A          128 ASFDAVWALESLHHM---PD-----------RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSL  193 (273)
T ss_dssp             TCEEEEEEESCTTTS---SC-----------HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred             CCccEEEEechhhhC---CC-----------HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCC
Confidence            789999988653322   11           1478888999999999988875321 11                     


Q ss_pred             cCcccHHHHHHhCCcEEEEEeeCCCCCCCCC
Q 014642          173 FCKWHIEELARKHSLLRLDCVQFRKEDYPGY  203 (421)
Q Consensus       173 Y~sWnI~~LAa~aGL~L~~~~~F~~~~YPGY  203 (421)
                      ++.-.+..+.+++||.+++...+.....+.|
T Consensus       194 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~  224 (273)
T 3bus_A          194 GGIDEYESDVRQAELVVTSTVDISAQARPSL  224 (273)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEECHHHHTTHH
T ss_pred             CCHHHHHHHHHHcCCeEEEEEECcHhHHHHH
Confidence            1223566788899999998888764433333

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.90  E-value=0.0093  Score=51.63  Aligned_cols=130  Identities=13%  Similarity=0.100  Sum_probs=88.0

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=||=|.=.++..|++.   +.++++.-.+  .++.+   .+..+     ..++.+ ...|+.++.    +....|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~---~a~~~-----~~~~~~-~~~d~~~~~----~~~~~f  103 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPA--TRLVE---LARQT-----HPSVTF-HHGTITDLS----DSPKRW  103 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCC--HHHHH---HHHHH-----CTTSEE-ECCCGGGGG----GSCCCE
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCC--HHHHH---HHHHh-----CCCCeE-EeCcccccc----cCCCCe
Confidence            679999999999999999987   3367766443  22222   12222     114544 344776653    345789


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-------------cCcccHHHHHHh
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-------------FCKWHIEELARK  184 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------Y~sWnI~~LAa~  184 (421)
                      |.|+.++..--. ..++           +..+++.+..+|+|+|.+.|+......             ++.-.+.++.++
T Consensus       104 D~v~~~~~l~~~-~~~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  171 (203)
T 3h2b_A          104 AGLLAWYSLIHM-GPGE-----------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET  171 (203)
T ss_dssp             EEEEEESSSTTC-CTTT-----------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred             EEEEehhhHhcC-CHHH-----------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence            999997632221 1111           357888899999999999999876542             233467788899


Q ss_pred             CCcEEEEEeeCCC
Q 014642          185 HSLLRLDCVQFRK  197 (421)
Q Consensus       185 aGL~L~~~~~F~~  197 (421)
                      +||.+++...+..
T Consensus       172 ~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          172 AGFQVTSSHWDPR  184 (203)
T ss_dssp             TTEEEEEEEECTT
T ss_pred             CCCcEEEEEecCC
Confidence            9999999988775

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.89  E-value=0.006  Score=54.64  Aligned_cols=133  Identities=10%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +....+..+||=||=|.=.++..|++.   +.++++.-.+ .+.+           +..++. +.+ ...|+.++..  .
T Consensus        36 l~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s-~~~~-----------~~a~~~-~~~-~~~d~~~~~~--~   96 (240)
T 3dli_A           36 IPYFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDIN-EDMI-----------KFCEGK-FNV-VKSDAIEYLK--S   96 (240)
T ss_dssp             GGGTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSC-HHHH-----------HHHHTT-SEE-ECSCHHHHHH--T
T ss_pred             HhhhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECC-HHHH-----------HHHHhh-cce-eeccHHHHhh--h
Confidence            444566789999999999999999886   3367665443 2222           222222 433 3456655421  2


Q ss_pred             cccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----------------Cc
Q 014642          112 LSKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------------PF  173 (421)
Q Consensus       112 Lk~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------PY  173 (421)
                      +....||.|+.+.-  |+.              ..-+..+|+.+..+|+|+|.+.|+..+..                ++
T Consensus        97 ~~~~~fD~i~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
T 3dli_A           97 LPDKYLDGVMISHFVEHLD--------------PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPV  162 (240)
T ss_dssp             SCTTCBSEEEEESCGGGSC--------------GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCC
T ss_pred             cCCCCeeEEEECCchhhCC--------------cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccC
Confidence            34588999998743  332              11145789999999999999999876532                23


Q ss_pred             CcccHHHHHHhCCcEEEEEeeCCC
Q 014642          174 CKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       174 ~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                      +...+..+.+++||.+++...|.+
T Consensus       163 ~~~~l~~~l~~aGf~~~~~~~~~~  186 (240)
T 3dli_A          163 HPETLKFILEYLGFRDVKIEFFEE  186 (240)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEECC
T ss_pred             CHHHHHHHHHHCCCeEEEEEEecc
Confidence            445778899999999999988864

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.88  E-value=0.0016  Score=60.44  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-HhCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-KKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++.+||=+|=|.=.++..|++..+.+..+++.-.+  ++..+   .+++|++.. ....+.+ ...|+.+     .+.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~g~~~v~~-~~~d~~~-----~~~  176 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLK---KAMDNLSEFYDIGNVRT-SRSDIAD-----FIS  176 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHH---HHHHHHHTTSCCTTEEE-ECSCTTT-----CCC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECC--HHHHH---HHHHHHHhcCCCCcEEE-EECchhc-----cCc
Confidence            3456799999999999999999886445567766554  22222   355555433 2112333 3447665     123


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...||.|+.|.|+.                   ..+++.+..+|+|+|.+.+......  ...++.+..++.||...+..
T Consensus       177 ~~~fD~Vi~~~~~~-------------------~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~~  235 (275)
T 1yb2_A          177 DQMYDAVIADIPDP-------------------WNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLETV  235 (275)
T ss_dssp             SCCEEEEEECCSCG-------------------GGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEEE
T ss_pred             CCCccEEEEcCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEEE
Confidence            46899999977643                   1678888999999999999875431  23455566677899888776


Q ss_pred             eC
Q 014642          194 QF  195 (421)
Q Consensus       194 ~F  195 (421)
                      ..
T Consensus       236 ~~  237 (275)
T 1yb2_A          236 EL  237 (275)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.86  E-value=0.0033  Score=64.60  Aligned_cols=148  Identities=18%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|-=..|..||...+....|+|.-.+. +.+    ..+.+|++.+.-.++ .+..-|+.++...   ...
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~-~rl----~~~~~n~~r~g~~nv-~v~~~Da~~l~~~---~~~  174 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFP-KRA----KILSENIERWGVSNA-IVTNHAPAELVPH---FSG  174 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSH-HHH----HHHHHHHHHHTCSSE-EEECCCHHHHHHH---HTT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCH-HHH----HHHHHHHHHcCCCce-EEEeCCHHHhhhh---ccc
Confidence            4577999999999999999998876555788765542 222    236677766543233 4455688776532   146


Q ss_pred             cccEEEEcCCCCCCCC--Ccc------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhCC
Q 014642          116 KFDRIIFNFPHAGFHG--KEE------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKHS  186 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G--kEd------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~aG  186 (421)
                      .||+|+.|=|..|..-  +..      ....+.....+...++.+|..+|+|+|.+..+-|+-.|- +.-.|..+.++.+
T Consensus       175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~  254 (456)
T 3m4x_A          175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP  254 (456)
T ss_dssp             CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred             cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC
Confidence            8999999999988411  110      112344455667789999999999999999999988775 5567777888888


Q ss_pred             cEEEEE
Q 014642          187 LLRLDC  192 (421)
Q Consensus       187 L~L~~~  192 (421)
                      +.+...
T Consensus       255 ~~l~~~  260 (456)
T 3m4x_A          255 VTIEEI  260 (456)
T ss_dssp             EEEECC
T ss_pred             CEEEec
Confidence            666544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.86  E-value=0.0035  Score=57.91  Aligned_cols=128  Identities=18%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||-+|=|.=.++.+|++.++.+.++++.-.+  ++..+   .++.|++.+.- ..+. +..-|+.+.     +..
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~v~-~~~~d~~~~-----~~~  179 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR--EEFAK---LAESNLTKWGLIERVT-IKVRDISEG-----FDE  179 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCC--HHHHH---HHHHHHHHTTCGGGEE-EECCCGGGC-----CSC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHcCCCCCEE-EEECCHHHc-----ccC
Confidence            456799999999999999999987655567665443  22222   35556544321 1233 344466554     334


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ..||.|+.|.|..                   ..++..+..+|+++|.+.+......  ....+.+..++.|+...+...
T Consensus       180 ~~~D~V~~~~~~~-------------------~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          180 KDVDALFLDVPDP-------------------WNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             CSEEEEEECCSCG-------------------GGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEEC
T ss_pred             CccCEEEECCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEEE
Confidence            6799999987643                   2567888899999999998875421  223455556678998777654


Q ss_pred             C
Q 014642          195 F  195 (421)
Q Consensus       195 F  195 (421)
                      -
T Consensus       239 ~  239 (277)
T 1o54_A          239 S  239 (277)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.84  E-value=0.0065  Score=57.07  Aligned_cols=146  Identities=11%  Similarity=0.091  Sum_probs=94.2

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ....+..+||=||=|.=.++..|++.++  ..+++.-.+  ++..+   .++.|+....-.+-.-+..-|+.++.    +
T Consensus       113 ~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~  181 (312)
T 3vc1_A          113 GQAGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLS--AAQAD---FGNRRARELRIDDHVRSRVCNMLDTP----F  181 (312)
T ss_dssp             CCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----C
T ss_pred             ccCCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCC--HHHHH---HHHHHHHHcCCCCceEEEECChhcCC----C
Confidence            3355678999999999999999999873  466665443  22222   24445443321112334555777653    3


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC-CCc------------------
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT-APF------------------  173 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g-~PY------------------  173 (421)
                      ....||.|+.+.-.--.            .   ...+|+.+..+|+|+|.+.|+-... ..+                  
T Consensus       182 ~~~~fD~V~~~~~l~~~------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV------------D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI  246 (312)
T ss_dssp             CTTCEEEEEEESCGGGS------------C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC
T ss_pred             CCCCEeEEEECCchhhC------------C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC
Confidence            45789999987542211            0   5678899999999999988765321 111                  


Q ss_pred             -CcccHHHHHHhCCcEEEEEeeCCCCCCCCCc
Q 014642          174 -CKWHIEELARKHSLLRLDCVQFRKEDYPGYS  204 (421)
Q Consensus       174 -~sWnI~~LAa~aGL~L~~~~~F~~~~YPGY~  204 (421)
                       +.-.+.++.+++||.+++...+.....|.+.
T Consensus       247 ~s~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~  278 (312)
T 3vc1_A          247 HSRREYLRAMADNRLVPHTIVDLTPDTLPYWE  278 (312)
T ss_dssp             CBHHHHHHHHHTTTEEEEEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence             1224567888999999999988755444443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.82  E-value=0.0033  Score=61.76  Aligned_cols=157  Identities=14%  Similarity=0.108  Sum_probs=97.8

Q ss_pred             ceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642           29 EKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE  108 (421)
Q Consensus        29 ~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~  108 (421)
                      ..++..+ .+.+||=+|=|.=.||+.||+.   +..++|.-.+  .+..+   .++.|++...-.++ .++.-|+.++-.
T Consensus       202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~n~~~n~~~~~-~~~~~d~~~~~~  271 (382)
T 1wxx_A          202 RLYMERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSS--AEALR---RAEENARLNGLGNV-RVLEANAFDLLR  271 (382)
T ss_dssp             HHHGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESC--HHHHH---HHHHHHHHTTCTTE-EEEESCHHHHHH
T ss_pred             HHHHHhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECC--HHHHH---HHHHHHHHcCCCCc-eEEECCHHHHHH
Confidence            4445555 6679999999999999999986   3456665444  22222   35666654322233 344557766432


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-Ccc--cHHHHHHhC
Q 014642          109 HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKW--HIEELARKH  185 (421)
Q Consensus       109 ~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sW--nI~~LAa~a  185 (421)
                      ...-...+||.||.|-|..+. +++    .+.........++..+..+|+|+|.+.++.+...+- +.|  .+.+.+.+.
T Consensus       272 ~~~~~~~~fD~Ii~dpP~~~~-~~~----~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~  346 (382)
T 1wxx_A          272 RLEKEGERFDLVVLDPPAFAK-GKK----DVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA  346 (382)
T ss_dssp             HHHHTTCCEEEEEECCCCSCC-STT----SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCeeEEEECCCCCCC-Chh----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            111124689999999998874 332    234455667788999999999999999998876542 222  233466677


Q ss_pred             C--cEEEEEeeCCCCCCC
Q 014642          186 S--LLRLDCVQFRKEDYP  201 (421)
Q Consensus       186 G--L~L~~~~~F~~~~YP  201 (421)
                      |  +.+++.. -.+.++|
T Consensus       347 g~~~~~i~~~-~~~~d~p  363 (382)
T 1wxx_A          347 HRLLRVVEKR-GQPFDHP  363 (382)
T ss_dssp             TCCEEEEEEE-CCCTTSC
T ss_pred             CCeEEEEEcC-CCCCCCC
Confidence            6  4444432 3444555

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.78  E-value=0.012  Score=51.30  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=71.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||=|.=.++..|++...   ++++.-.+  +++.+   .+..++.... .++.++ ..|+.++.    +...
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~~-~~d~~~~~----~~~~  102 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDIS--EDMIR---KAREYAKSRE-SNVEFI-VGDARKLS----FEDK  102 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESC--HHHHH---HHHHHHHHTT-CCCEEE-ECCTTSCC----SCTT
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECC--HHHHH---HHHHHHHhcC-CCceEE-ECchhcCC----CCCC
Confidence            3467999999999999999988742   67766554  33332   2444443322 345554 44777653    3457


Q ss_pred             cccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.|.|  +...              .-...+++.+..+|+|+|.+.|...+
T Consensus       103 ~~D~v~~~~~~~~~~~--------------~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          103 TFDYVIFIDSIVHFEP--------------LELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CEEEEEEESCGGGCCH--------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEEcCchHhCCH--------------HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            8999999988  4321              11357889999999999999887654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.77  E-value=0.006  Score=60.90  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=96.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..|++..+. ..|+|.-.+.. .    ...+..|++.+.- .+. +...|++++...  +...
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~-~----l~~~~~~~~~~g~-~~~-~~~~D~~~~~~~--~~~~  314 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQ-R----LSRVYDNLKRLGM-KAT-VKQGDGRYPSQW--CGEQ  314 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTT-T----HHHHHHHHHHTTC-CCE-EEECCTTCTHHH--HTTC
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHH-H----HHHHHHHHHHcCC-CeE-EEeCchhhchhh--cccC
Confidence            45789999999999999999987643 57887766542 1    1234455544321 243 345688876432  3346


Q ss_pred             cccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc-cHHH-HHHhC
Q 014642          116 KFDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW-HIEE-LARKH  185 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW-nI~~-LAa~a  185 (421)
                      .||+|+.|-|..|..-  + .+     ....+.....+-..++.+|..+|+|||.+.++.|+-.|-..- .|.. +++..
T Consensus       315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~  394 (429)
T 1sqg_A          315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTA  394 (429)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCC
Confidence            8999999999988411  1 11     112344555667899999999999999999999887665444 3444 44555


Q ss_pred             CcEEEE
Q 014642          186 SLLRLD  191 (421)
Q Consensus       186 GL~L~~  191 (421)
                      ++.+..
T Consensus       395 ~~~~~~  400 (429)
T 1sqg_A          395 DAELCE  400 (429)
T ss_dssp             TCEECS
T ss_pred             CCEEeC
Confidence            777653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.75  E-value=0.0096  Score=53.32  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=85.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ...+.+||=+|=|.=.++..|++.++....++|.-.. .+.+..    +.++.+..  .++.+ ...|+.+.... ....
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s-~~~i~~----~~~~a~~~--~~v~~-~~~d~~~~~~~-~~~~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS-HRSGRD----LINLAKKR--TNIIP-VIEDARHPHKY-RMLI  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCC-HHHHHH----HHHHHHHC--TTEEE-ECSCTTCGGGG-GGGC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECC-HHHHHH----HHHHhhcc--CCeEE-EEcccCChhhh-cccC
Confidence            3457799999999999999999988644567766443 222211    11222111  34443 45577764321 1234


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----C----cCcccHHHHHHhC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----P----FCKWHIEELARKH  185 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----P----Y~sWnI~~LAa~a  185 (421)
                      ..||.|+.|.|...                ....++..+..+|+|+|.+.|+.....     +    +..+  .++.+++
T Consensus       146 ~~~D~V~~~~~~~~----------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~l~~~  207 (233)
T 2ipx_A          146 AMVDVIFADVAQPD----------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE--VKKMQQE  207 (233)
T ss_dssp             CCEEEEEECCCCTT----------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH--HHTTGGG
T ss_pred             CcEEEEEEcCCCcc----------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH--HHHHHHC
Confidence            68999999988211                123566778899999999999876421     1    1222  3556788


Q ss_pred             CcEEEEEeeCCC
Q 014642          186 SLLRLDCVQFRK  197 (421)
Q Consensus       186 GL~L~~~~~F~~  197 (421)
                      ||.+.+....++
T Consensus       208 Gf~~~~~~~~~~  219 (233)
T 2ipx_A          208 NMKPQEQLTLEP  219 (233)
T ss_dssp             TEEEEEEEECTT
T ss_pred             CCceEEEEecCC
Confidence            999998777653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.74  E-value=0.012  Score=52.87  Aligned_cols=134  Identities=15%  Similarity=0.179  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++..   .++++.-.+  +.+.+   .+..++....-.++.+. ..|+.++.    +..
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~~~-~~d~~~~~----~~~   85 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDAT--KEMVE---VASSFAQEKGVENVRFQ-QGTAESLP----FPD   85 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESC--HHHHH---HHHHHHHHHTCCSEEEE-ECBTTBCC----SCT
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECC--HHHHH---HHHHHHHHcCCCCeEEE-ecccccCC----CCC
Confidence            3457799999999999999999874   256655443  33332   24444433321234443 44776653    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----------------------C
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------------------P  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------------P  172 (421)
                      ..||.|+.++..--.   .+           ...+++.+..+|+|+|.+.++-....                      .
T Consensus        86 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (239)
T 1xxl_A           86 DSFDIITCRYAAHHF---SD-----------VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRE  151 (239)
T ss_dssp             TCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCC
T ss_pred             CcEEEEEECCchhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCC
Confidence            789999998643222   11           24778889999999999988643221                      1


Q ss_pred             cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      ++.-.+..+.+++||..+....+
T Consensus       152 ~~~~~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          152 SSLSEWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCcEEEEEee
Confidence            22224556667777777766554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.74  E-value=0.013  Score=51.08  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=85.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC-------EEEeecccCCcC
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA-------SIIHGVDATEMK  107 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv-------~VlhgVDATkL~  107 (421)
                      ..++.+||=||=|.=.++..|++.   +.++++.-.+.  .+.+   .++.+   ++..|.       .-+...|+..+.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~--~~~~---~a~~~---~~~~~~~~~~~~~~~~~~~d~~~~~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINS--EAIR---LAETA---ARSPGLNQKTGGKAEFKVENASSLS   96 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCH--HHHH---HHHHH---TTCCSCCSSSSCEEEEEECCTTSCC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCH--HHHH---HHHHH---HHhcCCccccCcceEEEEecccccC
Confidence            346789999999999999999987   34676665542  2222   12222   333443       234455666653


Q ss_pred             cccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----------------
Q 014642          108 EHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----------------  171 (421)
Q Consensus       108 ~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----------------  171 (421)
                          +....||.|+.+....-..           +......+++.+..+|+|+|.+.++.....                
T Consensus        97 ----~~~~~~D~v~~~~~l~~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~  161 (235)
T 3sm3_A           97 ----FHDSSFDFAVMQAFLTSVP-----------DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPI  161 (235)
T ss_dssp             ----SCTTCEEEEEEESCGGGCC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHH
T ss_pred             ----CCCCceeEEEEcchhhcCC-----------CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccc
Confidence                3457899999986544321           122234788889999999999988743211                


Q ss_pred             ----------------------CcCcccHHHHHHhCCcEEEEEee
Q 014642          172 ----------------------PFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       172 ----------------------PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                                            .++.-.+.++.+++||.+++...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          162 TKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             HCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             hhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence                                  12334567788888888887754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.72  E-value=0.011  Score=49.77  Aligned_cols=108  Identities=20%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||=+|=|.=.++..|++.   +.++++.-.+.  +..+   .++.|+....-.+  +.+ ...|+.+.     +.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~--~~~~---~a~~~~~~~~~~~~~~~~-~~~d~~~~-----~~  116 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE---VKSTTMADINR--RAIK---LAKENIKLNNLDNYDIRV-VHSDLYEN-----VK  116 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCH--HHHH---HHHHHHHHTTCTTSCEEE-EECSTTTT-----CT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCH--HHHH---HHHHHHHHcCCCccceEE-EECchhcc-----cc
Confidence            36779999999999999999887   45677776553  2222   2444544322112  333 34466553     22


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ...||.|+.|.|....             ...+..+++.+..+|+++|.+.++....
T Consensus       117 ~~~~D~v~~~~~~~~~-------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          117 DRKYNKIITNPPIRAG-------------KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTTC-------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEECCCcccc-------------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            5689999999885431             2335678999999999999999988765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.71  E-value=0.012  Score=54.22  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=87.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+..+||=||=|.=.++..|++.++  .++++.-.. .+ ..+   .+..++....- ..+.++ ..|+.++.    +
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s-~~-~~~---~a~~~~~~~~~~~~~~~~-~~d~~~~~----~  146 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIA-PV-QNK---RNEEYNNQAGLADNITVK-YGSFLEIP----C  146 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESC-HH-HHH---HHHHHHHHHTCTTTEEEE-ECCTTSCS----S
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCC-HH-HHH---HHHHHHHhcCCCcceEEE-EcCcccCC----C
Confidence            446678999999999999999999874  366665443 22 222   23334333221 124443 44777753    3


Q ss_pred             ccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC---CC---------------
Q 014642          113 SKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT---AP---------------  172 (421)
Q Consensus       113 k~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---~P---------------  172 (421)
                      ....||.|+.++.  |+..                ...+|+.+..+|+|+|.+.|+-...   .+               
T Consensus       147 ~~~~fD~v~~~~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPD----------------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHD  210 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSS
T ss_pred             CCCCEeEEEecchhhhcCC----------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCC
Confidence            4578999998854  3321                3578899999999999988875321   11               


Q ss_pred             -cCcccHHHHHHhCCcEEEEEeeCC
Q 014642          173 -FCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       173 -Y~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                       .+.-.+.++.+++||.+++...+.
T Consensus       211 ~~~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          211 MGSLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             CCCHHHHHHHHHHCCCeEEEEEECc
Confidence             012245678889999999887654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.71  E-value=0.0015  Score=59.58  Aligned_cols=141  Identities=16%  Similarity=0.281  Sum_probs=89.3

Q ss_pred             eeeeccCC-----------CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh------
Q 014642           30 KWIMHYSS-----------KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK------   92 (421)
Q Consensus        30 K~i~~Yss-----------~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~------   92 (421)
                      .|...|..           +.+||=||=|.=.|++.||+... ..++++.-.+  +.+.+   .+.+|++.++.      
T Consensus        31 ~w~~~f~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~~~~  104 (246)
T 2vdv_E           31 DWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIR--VQVTN---YVEDRIIALRNNTASKH  104 (246)
T ss_dssp             CGGGTCGGGBC----CBSCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESC--HHHHH---HHHHHHHHHHHTC-CCS
T ss_pred             CHHHHhCcccccccccCCCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcC--HHHHH---HHHHHHHHHhhcccccc
Confidence            56666654           56899999999999999998863 3466665433  33332   35667766632      


Q ss_pred             --CCCEEEeecccCC-cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642           93 --LGASIIHGVDATE-MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus        93 --~Gv~VlhgVDATk-L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                        .++. +...|+.+ |...  +....+|.|+.+||-.-.+.+..      ..+.+...|+..+..+|++||.+.+....
T Consensus       105 ~~~nv~-~~~~D~~~~l~~~--~~~~~~d~v~~~~p~p~~k~~~~------~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          105 GFQNIN-VLRGNAMKFLPNF--FEKGQLSKMFFCFPDPHFKQRKH------KARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             TTTTEE-EEECCTTSCGGGT--SCTTCEEEEEEESCCCC------------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCcEE-EEeccHHHHHHHh--ccccccCEEEEECCCcccccchh------HHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence              1333 44568876 4432  34578999999999866432211      11222357888899999999999985533


Q ss_pred             CCCcCcccHHHHHHhCC
Q 014642          170 TAPFCKWHIEELARKHS  186 (421)
Q Consensus       170 g~PY~sWnI~~LAa~aG  186 (421)
                       ..|..|-.+.+.....
T Consensus       176 -~~~~~~~~~~~~~~~~  191 (246)
T 2vdv_E          176 -KDLHEWMVKHLEEHPL  191 (246)
T ss_dssp             -HHHHHHHHHHHHHSTT
T ss_pred             -HHHHHHHHHHHHhCcC
Confidence             3466777666655443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.68  E-value=0.0052  Score=54.89  Aligned_cols=137  Identities=12%  Similarity=0.171  Sum_probs=87.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++.+  +.++++.-.+.  +..+   .+..++...  ..+ -+...|+.++.    +..
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~--~~~~---~a~~~~~~~--~~~-~~~~~d~~~~~----~~~  118 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICS--NIVN---MANERVSGN--NKI-IFEANDILTKE----FPE  118 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCH--HHHH---HHHHTCCSC--TTE-EEEECCTTTCC----CCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCH--HHHH---HHHHHhhcC--CCe-EEEECccccCC----CCC
Confidence            3456799999999999999999987  34666665532  2221   122221111  123 33455777763    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-------------------cCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-------------------FCK  175 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------------Y~s  175 (421)
                      ..||.|+.+...--.            ...-...+++.+..+|+|+|.+.|+.....+                   ++.
T Consensus       119 ~~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (266)
T 3ujc_A          119 NNFDLIYSRDAILAL------------SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITV  186 (266)
T ss_dssp             TCEEEEEEESCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCH
T ss_pred             CcEEEEeHHHHHHhc------------ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCH
Confidence            789999998532221            0122457888999999999998887643221                   223


Q ss_pred             ccHHHHHHhCCcEEEEEeeCCC
Q 014642          176 WHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       176 WnI~~LAa~aGL~L~~~~~F~~  197 (421)
                      -.+..+.+++||..++...+..
T Consensus       187 ~~~~~~l~~~Gf~~~~~~~~~~  208 (266)
T 3ujc_A          187 EEYADILTACNFKNVVSKDLSD  208 (266)
T ss_dssp             HHHHHHHHHTTCEEEEEEECHH
T ss_pred             HHHHHHHHHcCCeEEEEEeCCH
Confidence            3567788899999998877653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.67  E-value=0.0055  Score=55.25  Aligned_cols=131  Identities=18%  Similarity=0.226  Sum_probs=86.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=+|=|.=.++..|++..+.+..+++.-.+  ++..+   .++.|++...-.+-..+..-|+.+.     +...
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~  161 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIR--EDFAK---LAWENIKWAGFDDRVTIKLKDIYEG-----IEEE  161 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHH---HHHHHHHHHTCTTTEEEECSCGGGC-----CCCC
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecC--HHHHH---HHHHHHHHcCCCCceEEEECchhhc-----cCCC
Confidence            457799999999999999999987656677776544  22322   3566665543223234455566643     3346


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC--cEEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS--LLRLDCV  193 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG--L~L~~~~  193 (421)
                      .||.|+.|.|..                   ..++..+..+|+++|.+.+......  ....+.+..++.|  +...+..
T Consensus       162 ~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~f~~~~~~  220 (255)
T 3mb5_A          162 NVDHVILDLPQP-------------------ERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLREFKDYFMKPRTI  220 (255)
T ss_dssp             SEEEEEECSSCG-------------------GGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHTGGGBSCCEEE
T ss_pred             CcCEEEECCCCH-------------------HHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccccEEE
Confidence            799999987733                   2578888999999999988753321  2234556667777  7666665


Q ss_pred             eCCC
Q 014642          194 QFRK  197 (421)
Q Consensus       194 ~F~~  197 (421)
                      ....
T Consensus       221 e~~~  224 (255)
T 3mb5_A          221 NVLV  224 (255)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            5433

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=96.66  E-value=0.029  Score=48.64  Aligned_cols=130  Identities=12%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++. +  .++++.-.+.  ++          ++..++.... +...|+.++..  .+...
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~--~~----------~~~~~~~~~~-~~~~d~~~~~~--~~~~~   92 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFP--EA----------AEQAKEKLDH-VVLGDIETMDM--PYEEE   92 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSH--HH----------HHHHHTTSSE-EEESCTTTCCC--CSCTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCH--HH----------HHHHHHhCCc-EEEcchhhcCC--CCCCC
Confidence            46789999999999999999987 3  5666665442  22          2233333333 34457665422  23457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------------------------
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------------------------  171 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------------------------  171 (421)
                      .||.|+.+...--.   .+           ...+++.+..+|+++|.+.++..+..                        
T Consensus        93 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (230)
T 3cc8_A           93 QFDCVIFGDVLEHL---FD-----------PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKT  158 (230)
T ss_dssp             CEEEEEEESCGGGS---SC-----------HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTT
T ss_pred             ccCEEEECChhhhc---CC-----------HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcc
Confidence            89999998643221   11           13788999999999999999864311                        


Q ss_pred             ---CcCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          172 ---PFCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       172 ---PY~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                         .++.-.+.++.+++||.+++...+..
T Consensus       159 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  187 (230)
T 3cc8_A          159 HIRFFTFNEMLRMFLKAGYSISKVDRVYV  187 (230)
T ss_dssp             CCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             eEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence               12344677888999999888776553

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.66  E-value=0.011  Score=51.51  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++. + ..+++|.-.+  +...+   .++.|+....-.++.+ ..-|+.+.      ...
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~------~~~  124 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDIS--DESMT---AAEENAALNGIYDIAL-QKTSLLAD------VDG  124 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHHHHHTTCCCCEE-EESSTTTT------CCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEE-Eecccccc------CCC
Confidence            45679999999999999998874 3 3467666554  22222   2555554433223443 34566543      237


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      .||.|+.|.|.                 ..+..+++.+..+|+++|.+.++....  .....+..+.+++|+.+.+...
T Consensus       125 ~fD~i~~~~~~-----------------~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~Gf~~~~~~~  184 (205)
T 3grz_A          125 KFDLIVANILA-----------------EILLDLIPQLDSHLNEDGQVIFSGIDY--LQLPKIEQALAENSFQIDLKMR  184 (205)
T ss_dssp             CEEEEEEESCH-----------------HHHHHHGGGSGGGEEEEEEEEEEEEEG--GGHHHHHHHHHHTTEEEEEEEE
T ss_pred             CceEEEECCcH-----------------HHHHHHHHHHHHhcCCCCEEEEEecCc--ccHHHHHHHHHHcCCceEEeec
Confidence            89999999753                 124688999999999999998864332  2455677888999999887654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.62  E-value=0.0022  Score=55.16  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=+|=|.=.++..|++.. .+.++++.-.+..  ..+   .++.|+..... .+. +...|+.+.-........
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~--~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~~~~~~~~~  100 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMD--ALA---VARRNAERFGA-VVD-WAAADGIEWLIERAERGR  100 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHH--HHH---HHHHHHHHhCC-ceE-EEEcchHhhhhhhhhccC
Confidence            567799999999999999999885 3446776655432  221   23444443321 222 223344441000001137


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHH------------HhHHHHHHHHHhhHhccCCCCe-EEEEecCCCCcCcccHHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIR------------MHMSLVEGFFRNASGMLRPRGE-VHVSHKTTAPFCKWHIEELA  182 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~------------~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~g~PY~sWnI~~LA  182 (421)
                      .||.|+.|.|.............++            ....++..|++.+..+|+++|. +.+.+...   ..-.+.++.
T Consensus       101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~l  177 (215)
T 4dzr_A          101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN---QADEVARLF  177 (215)
T ss_dssp             CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS---CHHHHHHHT
T ss_pred             cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc---cHHHHHHHH
Confidence            8999999999765321111001111            1123348899999999999999 77766432   223445555


Q ss_pred             H--hCCcEEEE
Q 014642          183 R--KHSLLRLD  191 (421)
Q Consensus       183 a--~aGL~L~~  191 (421)
                      +  +.|+..++
T Consensus       178 ~~~~~gf~~~~  188 (215)
T 4dzr_A          178 APWRERGFRVR  188 (215)
T ss_dssp             GGGGGGTEECC
T ss_pred             HHhhcCCceEE
Confidence            6  66765443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.61  E-value=0.0062  Score=62.76  Aligned_cols=147  Identities=17%  Similarity=0.215  Sum_probs=100.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|-=..|..||+..+....|+|.-.+. +.+    ..+.+|++.+.-. +.++ .-|++++...   ...
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~-~~l----~~a~~n~~r~G~~-v~~~-~~Da~~l~~~---~~~  169 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDG-KRV----RGLLENVERWGAP-LAVT-QAPPRALAEA---FGT  169 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCH-HHH----HHHHHHHHHHCCC-CEEE-CSCHHHHHHH---HCS
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCH-HHH----HHHHHHHHHcCCe-EEEE-ECCHHHhhhh---ccc
Confidence            3577999999999999999998876545677765442 222    2366677655332 4443 4587776432   246


Q ss_pred             cccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhC-
Q 014642          116 KFDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKH-  185 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~a-  185 (421)
                      .||+|+.|=|..|..-  + .+     ....+.....+-..++.+|..+|+|+|.+..+-|+-.|- +.-.|..+.++. 
T Consensus       170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~  249 (464)
T 3m6w_A          170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHP  249 (464)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCT
T ss_pred             cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCC
Confidence            8999999999987410  1 11     123455556677889999999999999999998987665 556666666655 


Q ss_pred             CcEEEEE
Q 014642          186 SLLRLDC  192 (421)
Q Consensus       186 GL~L~~~  192 (421)
                      ++.+...
T Consensus       250 ~~~l~~~  256 (464)
T 3m6w_A          250 EFRLEDA  256 (464)
T ss_dssp             TEEEECC
T ss_pred             CcEEEec
Confidence            6777654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.61  E-value=0.01  Score=60.99  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=95.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=+|=|-=++|..||+..+....|+|.-.+. +.+    ..+.+|++.+.-.++. +..-|++++...   ....
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~-~~l----~~~~~n~~r~g~~nv~-~~~~D~~~~~~~---~~~~  187 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSA-SRV----KVLHANISRCGISNVA-LTHFDGRVFGAA---VPEM  187 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSH-HHH----HHHHHHHHHHTCCSEE-EECCCSTTHHHH---STTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH-HHH----HHHHHHHHHcCCCcEE-EEeCCHHHhhhh---cccc
Confidence            678999999999999999998876555788765552 222    2366677665433344 445688876432   2367


Q ss_pred             ccEEEEcCCCCCCCC--C-cc-----cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhCC
Q 014642          117 FDRIIFNFPHAGFHG--K-EE-----DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKHS  186 (421)
Q Consensus       117 FDrIIFNFPH~G~~G--k-Ed-----~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~aG  186 (421)
                      ||+|+.|=|..|..-  + .+     ....+.....+-..++.+|..+|+|+|.+.++-|+-.|. +.-.|..+.++.+
T Consensus       188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~  266 (479)
T 2frx_A          188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP  266 (479)
T ss_dssp             EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred             CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence            999999999987411  1 11     123455555667789999999999999999998887664 3445556555443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.60  E-value=0.01  Score=52.18  Aligned_cols=104  Identities=19%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  ..+.+   .+..++.... .++.++ ..|+.++.    +. ..
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s--~~~~~---~a~~~~~~~~-~~~~~~-~~d~~~~~----~~-~~  101 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLS--QEMLS---EAENKFRSQG-LKPRLA-CQDISNLN----IN-RK  101 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSC--HHHHH---HHHHHHHHTT-CCCEEE-CCCGGGCC----CS-CC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECC--HHHHH---HHHHHHhhcC-CCeEEE-ecccccCC----cc-CC
Confidence            4679999999999999999886   2356655443  23322   1333332211 135443 44776653    22 67


Q ss_pred             ccEEEEcC---CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          117 FDRIIFNF---PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       117 FDrIIFNF---PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ||.|+.++   +|+..             ..-+..+++.+..+|+|+|.+.++..
T Consensus       102 fD~v~~~~~~l~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A          102 FDLITCCLDSTNYIID-------------SDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             EEEEEECTTGGGGCCS-------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ceEEEEcCccccccCC-------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99999976   55531             12245788999999999999988653

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.57  E-value=0.0058  Score=57.26  Aligned_cols=136  Identities=15%  Similarity=0.070  Sum_probs=89.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~L  112 (421)
                      .+..+||=||=|.=.++..||.....+.++++.-.+  +...+   .+..|+   +..|.   .-+..-|+.++.    +
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~----~  184 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD--PEALD---GATRLA---AGHALAGQITLHRQDAWKLD----T  184 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESC--HHHHH---HHHHHH---TTSTTGGGEEEEECCGGGCC----C
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECC--HHHHH---HHHHHH---HhcCCCCceEEEECchhcCC----c
Confidence            557899999999999999997443345567665543  22222   233333   33443   345566887764    2


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC--------------------
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP--------------------  172 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P--------------------  172 (421)
                      . ..||.|+.|.+..-...           ..-...|++.+..+|+|+|.+.|+.....|                    
T Consensus       185 ~-~~fD~v~~~~~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~  252 (305)
T 3ocj_A          185 R-EGYDLLTSNGLNIYEPD-----------DARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL  252 (305)
T ss_dssp             C-SCEEEEECCSSGGGCCC-----------HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred             c-CCeEEEEECChhhhcCC-----------HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence            3 78999999876554311           222456888999999999999998744321                    


Q ss_pred             ----------------cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 ----------------FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 ----------------Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                                      ++.-.+.++.+++||..++....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          253 QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC
T ss_pred             hhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc
Confidence                            12234667888999999988763

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.56  E-value=0.01  Score=55.50  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=67.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~L  112 (421)
                      .++.+||=||=|.=.++..|++.++  .++++.-.+ .+.+ +   .+..+   +++.|.   .-+...|+.++.     
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s-~~~~-~---~a~~~---~~~~~~~~~v~~~~~d~~~~~-----  153 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLS-KNQH-A---RCEQV---LASIDTNRSRQVLLQGWEDFA-----  153 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESC-HHHH-H---HHHHH---HHTSCCSSCEEEEESCGGGCC-----
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECC-HHHH-H---HHHHH---HHhcCCCCceEEEECChHHCC-----
Confidence            4577999999999999999998874  367666554 2222 2   13333   333342   223345776652     


Q ss_pred             ccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          113 SKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       113 k~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                        ..||.|+.+..  |++.   +           -...+++.+..+|+|+|.+.|+...
T Consensus       154 --~~fD~v~~~~~l~~~~~---~-----------~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGH---E-----------NYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             --CCCSEEEEESCGGGTCG---G-----------GHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --CCcCEEEEeChHHhcCH---H-----------HHHHHHHHHHHhcCCCcEEEEEEec
Confidence              67999998853  3431   1           1457888899999999998887644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.54  E-value=0.0056  Score=53.69  Aligned_cols=134  Identities=15%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           31 WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        31 ~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      .+.++.+..+||=||=|.=.++..|++..   .++++.-.+  +++.+   .+..++.   . ++.++. .|+.++    
T Consensus        36 ~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s--~~~~~---~a~~~~~---~-~v~~~~-~d~~~~----   98 (250)
T 2p7i_A           36 AFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEAS--EEAIS---HAQGRLK---D-GITYIH-SRFEDA----   98 (250)
T ss_dssp             HHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESC--HHHHH---HHHHHSC---S-CEEEEE-SCGGGC----
T ss_pred             HHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCC--HHHHH---HHHHhhh---C-CeEEEE-ccHHHc----
Confidence            34555677899999999999999998763   267665443  22221   1222211   1 454443 477766    


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhH-hccCCCCeEEEEecCCC------------------
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNAS-GMLRPRGEVHVSHKTTA------------------  171 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~-~lL~~~GeIHVTLk~g~------------------  171 (421)
                       +....||.|+.++-.--.   .+           ...+++.+. .+|+|+|.+.|+..+..                  
T Consensus        99 -~~~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (250)
T 2p7i_A           99 -QLPRRYDNIVLTHVLEHI---DD-----------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSA  163 (250)
T ss_dssp             -CCSSCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTC
T ss_pred             -CcCCcccEEEEhhHHHhh---cC-----------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchh
Confidence             235789999998631111   11           147888899 99999999999875432                  


Q ss_pred             ------------CcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          172 ------------PFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       172 ------------PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                                  .++.-.+..+.+++||.+++...+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  200 (250)
T 2p7i_A          164 VTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIF  200 (250)
T ss_dssp             CCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cccccccccccccCCHHHHHHHHHHCCCeEEEEeeeE
Confidence                        1233367788899999998886543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.53  E-value=0.012  Score=53.21  Aligned_cols=131  Identities=17%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||=||=|.=.++..|++..+   .+++  .|.-+++.+   .+..++   ++.|.  .-+...|+.++.    +.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~g--vD~s~~~l~---~a~~~~---~~~~~~~v~~~~~d~~~l~----~~  100 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK---KVVA--FDLTEDILK---VARAFI---EGNGHQQVEYVQGDAEQMP----FT  100 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS---EEEE--EESCHHHHH---HHHHHH---HHTTCCSEEEEECCC-CCC----SC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC---EEEE--EeCCHHHHH---HHHHHH---HhcCCCceEEEEecHHhCC----CC
Confidence            4567999999999999999998752   5555  453233332   133333   33332  223345777653    34


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC--C--------------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT--A--------------------  171 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--~--------------------  171 (421)
                      ...||.|+.++-.--.   .|           ...+|+.+..+|+|+|.+.++-...  .                    
T Consensus       101 ~~~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHF---PN-----------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHR  166 (260)
T ss_dssp             TTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCC
T ss_pred             CCCEEEEEEhhhhHhc---CC-----------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccC
Confidence            5789999998643222   11           2378888999999999998863211  1                    


Q ss_pred             CcCcccHHHHHHhCCcEEEEEeeC
Q 014642          172 PFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       172 PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .++.-.+.++.+++||.+.....+
T Consensus       167 ~~~~~~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          167 AWKKSDWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             CCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCeEEEEEEe
Confidence            112224556777788887766554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.51  E-value=0.0084  Score=54.79  Aligned_cols=128  Identities=17%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-H--hCCCEEEeecccCCcCcccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-K--KLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-r--~~Gv~VlhgVDATkL~~~~~  111 (421)
                      ..+..+||-+|=|.=+++.+|++..+...++++.-.+  ++..+   .+..|++.. .  ...+.+ ...|+.++.    
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~g~~~~~v~~-~~~d~~~~~----  166 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR--ADHAE---HARRNVSGCYGQPPDNWRL-VVSDLADSE----  166 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHH---HHHHHHHHHHTSCCTTEEE-ECSCGGGCC----
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHhcCCCCCcEEE-EECchHhcC----
Confidence            3457799999999999999999987655677766554  22222   355666554 2  123444 345776652    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH-HHHhCCcEEE
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE-LARKHSLLRL  190 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~-LAa~aGL~L~  190 (421)
                      +....||.|+.|.|+.-                   .++..+..+|+++|.+.+...+..  ....+.. +.+..++...
T Consensus       167 ~~~~~~D~v~~~~~~~~-------------------~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~~~f~~~  225 (280)
T 1i9g_A          167 LPDGSVDRAVLDMLAPW-------------------EVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWTEP  225 (280)
T ss_dssp             CCTTCEEEEEEESSCGG-------------------GGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBCCC
T ss_pred             CCCCceeEEEECCcCHH-------------------HHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhcCCcCCc
Confidence            33567999999887331                   568888999999999999876532  1222333 4433666554


Q ss_pred             EEe
Q 014642          191 DCV  193 (421)
Q Consensus       191 ~~~  193 (421)
                      +..
T Consensus       226 ~~~  228 (280)
T 1i9g_A          226 RAW  228 (280)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.51  E-value=0.0026  Score=63.36  Aligned_cols=137  Identities=19%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=+|=|.=.++..|++.   +..|++.-.+  +...+   .++.|++... ..+.++ .-|+.++..    ....
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis--~~al~---~A~~n~~~~~-~~v~~~-~~D~~~~~~----~~~~  298 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM---GAEVVGVEDD--LASVL---SLQKGLEANA-LKAQAL-HSDVDEALT----EEAR  298 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT---TCEEEEEESB--HHHHH---HHHHHHHHTT-CCCEEE-ECSTTTTSC----TTCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcC-CCeEEE-Ecchhhccc----cCCC
Confidence            4568999999999999999886   2367765544  22222   2555654332 235444 357666532    2478


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc------cHHHHHHhCCcEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW------HIEELARKHSLLRL  190 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nI~~LAa~aGL~L~  190 (421)
                      ||.||.|.|.... +..        ....+..|++.+..+|+++|.+.|......+|..|      +++.+ +..||.+.
T Consensus       299 fD~Ii~npp~~~~-~~~--------~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~Vl  368 (381)
T 3dmg_A          299 FDIIVTNPPFHVG-GAV--------ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYKVL  368 (381)
T ss_dssp             EEEEEECCCCCTT-CSS--------CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSEEE
T ss_pred             eEEEEECCchhhc-ccc--------cHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEEEE
Confidence            9999999996642 111        12446789999999999999999988776666443      33344 66777777


Q ss_pred             EEeeCCC
Q 014642          191 DCVQFRK  197 (421)
Q Consensus       191 ~~~~F~~  197 (421)
                      +......
T Consensus       369 ~a~~~~~  375 (381)
T 3dmg_A          369 FAEKRGR  375 (381)
T ss_dssp             EEECC--
T ss_pred             EEEEecc
Confidence            7655443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.49  E-value=0.0034  Score=62.13  Aligned_cols=164  Identities=15%  Similarity=0.087  Sum_probs=98.8

Q ss_pred             cccccceeeecc-CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEee
Q 014642           24 DEKEEEKWIMHY-SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHG  100 (421)
Q Consensus        24 ~~~~~~K~i~~Y-ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~Vlhg  100 (421)
                      +...+++++..+ ..+.+||=+|=|.=.||+.||+. + +..|++.-.+..  ..+   .|+.|++...-.  .+. +..
T Consensus       198 ~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~--al~---~A~~N~~~n~~~~~~v~-~~~  269 (385)
T 2b78_A          198 DQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKR--SRA---LSLAHFEANHLDMANHQ-LVV  269 (385)
T ss_dssp             GGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTT--HHH---HHHHHHHHTTCCCTTEE-EEE
T ss_pred             cHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHH--HHH---HHHHHHHHcCCCccceE-EEE
Confidence            334455677666 77889999999998999999875 2 346766655432  222   356666543211  233 344


Q ss_pred             cccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc--CcccH
Q 014642          101 VDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF--CKWHI  178 (421)
Q Consensus       101 VDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY--~sWnI  178 (421)
                      -||.+.-......+.+||.||.|-|-.+. ++..    +......+..++..|..+|+|+|.|.++.+.....  ..|++
T Consensus       270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~-~~~~----~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~  344 (385)
T 2b78_A          270 MDVFDYFKYARRHHLTYDIIIIDPPSFAR-NKKE----VFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQ  344 (385)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEECCCCC------C----CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCccEEEECCCCCCC-Chhh----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHH
Confidence            57765321111124589999999998752 1111    11123345567788999999999999998776431  22343


Q ss_pred             H-HHHHhCCcEEEEEeeCCCCCCC
Q 014642          179 E-ELARKHSLLRLDCVQFRKEDYP  201 (421)
Q Consensus       179 ~-~LAa~aGL~L~~~~~F~~~~YP  201 (421)
                      . +.|+++|..+++ ..-.+.|+|
T Consensus       345 i~~~~~~~g~~~~~-~~~~~~D~p  367 (385)
T 2b78_A          345 IEKGFGKQKHTYLD-LQQLPSDFA  367 (385)
T ss_dssp             HHHHHTTCCCEEEE-EECCCTTSC
T ss_pred             HHHHHHHcCCcEEE-eCCCCCCCC
Confidence            3 467788888444 444566676

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.49  E-value=0.011  Score=54.87  Aligned_cols=134  Identities=10%  Similarity=0.029  Sum_probs=89.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||=|.=..++.||..++ +..|+  ..|..+...+   -++.|++.+.-.+++++++ |+.++.... ....
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~-~~~v~--~vD~s~~~~~---~a~~~~~~~~l~~v~~~~~-d~~~~~~~~-~~~~  150 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRP-ELELV--LVDATRKKVA---FVERAIEVLGLKGARALWG-RAEVLAREA-GHRE  150 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCT-TCEEE--EEESCHHHHH---HHHHHHHHHTCSSEEEEEC-CHHHHTTST-TTTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHHHHHhCCCceEEEEC-cHHHhhccc-ccCC
Confidence            4577999999999999999998763 34554  4564443333   4677887775445665554 777664321 1236


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhCCcEEEEEee
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      .||.|+.+-  +.     +           +..++..+..+|+++|.+.+.... .+. ..-.+...++..|+.+.+..+
T Consensus       151 ~fD~I~s~a--~~-----~-----------~~~ll~~~~~~LkpgG~l~~~~g~-~~~~e~~~~~~~l~~~G~~~~~~~~  211 (249)
T 3g89_A          151 AYARAVARA--VA-----P-----------LCVLSELLLPFLEVGGAAVAMKGP-RVEEELAPLPPALERLGGRLGEVLA  211 (249)
T ss_dssp             CEEEEEEES--SC-----C-----------HHHHHHHHGGGEEEEEEEEEEECS-CCHHHHTTHHHHHHHHTEEEEEEEE
T ss_pred             CceEEEECC--cC-----C-----------HHHHHHHHHHHcCCCeEEEEEeCC-CcHHHHHHHHHHHHHcCCeEEEEEE
Confidence            899999862  11     1           347888899999999998765432 122 223455667788999999988


Q ss_pred             CC
Q 014642          195 FR  196 (421)
Q Consensus       195 F~  196 (421)
                      |.
T Consensus       212 ~~  213 (249)
T 3g89_A          212 LQ  213 (249)
T ss_dssp             EE
T ss_pred             ee
Confidence            74

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.49  E-value=0.017  Score=52.54  Aligned_cols=136  Identities=15%  Similarity=0.214  Sum_probs=88.4

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||=|+=.++..|++.. .+..++++-.+  ..+.+   .+..++....-.+ ..+...|+.++.    +..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~~  103 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDIS--PESLE---KARENTEKNGIKN-VKFLQANIFSLP----FED  103 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESC--HHHHH---HHHHHHHHTTCCS-EEEEECCGGGCC----SCT
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECC--HHHHH---HHHHHHHHcCCCC-cEEEEcccccCC----CCC
Confidence            4567899999999999999999885 34567666544  22222   2334433322112 334445777654    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC-------------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT-------------------------  169 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-------------------------  169 (421)
                      ..||.|+.++...-.   .+           ...+++.+..+|+|+|.+.++..+                         
T Consensus       104 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHL---QS-----------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQA  169 (276)
T ss_dssp             TCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEechhhhc---CC-----------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHH
Confidence            789999998754332   11           136788889999999999987532                         


Q ss_pred             ---CCCcCcccHHHHHHhCCcEEEEEeeC
Q 014642          170 ---TAPFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       170 ---g~PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                         +.++..=.+..+.+++||..++...+
T Consensus       170 ~~~~~~~~~~~l~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          170 YMKGNSLVGRQIYPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             HTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred             hcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence               11222235677889999999888755

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.47  E-value=0.0073  Score=58.85  Aligned_cols=141  Identities=14%  Similarity=0.085  Sum_probs=85.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk~  114 (421)
                      +..+||=+|=|.=.||+.|++. + + .|+|  .|.-....+   .++.|++...-.+  +. +..-|+.++........
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-g-a-~V~~--VD~s~~al~---~a~~n~~~~gl~~~~v~-~i~~D~~~~l~~~~~~~  223 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-G-A-EVTH--VDASKKAIG---WAKENQVLAGLEQAPIR-WICEDAMKFIQREERRG  223 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T-C-EEEE--ECSCHHHHH---HHHHHHHHHTCTTSCEE-EECSCHHHHHHHHHHHT
T ss_pred             CCCcEEEcccccCHHHHHHHHc-C-C-EEEE--EECCHHHHH---HHHHHHHHcCCCccceE-EEECcHHHHHHHHHhcC
Confidence            4569999999999999999875 2 2 5554  554333333   3666766543222  43 34457766432111114


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc---c-HHHHHHhCCcEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW---H-IEELARKHSLLRL  190 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW---n-I~~LAa~aGL~L~  190 (421)
                      .+||.||.|-|..+. ++...   +......+..++..|..+|+++|.+.++.......+.-   + |.+.++++|+.+.
T Consensus       224 ~~fD~Ii~dPP~~~~-~~~~~---~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          224 STYDIILTDPPKFGR-GTHGE---VWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CCBSEEEECCCSEEE-CTTCC---EEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CCceEEEECCccccC-CchHH---HHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            689999999997663 21110   11123446788899999999999977776544332221   2 2335557788775

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=96.44  E-value=0.0038  Score=57.49  Aligned_cols=137  Identities=15%  Similarity=0.205  Sum_probs=87.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh---C---CCEEEeecccCC-cCccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK---L---GASIIHGVDATE-MKEHS  110 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~---~---Gv~VlhgVDATk-L~~~~  110 (421)
                      ..+||=||=|.=.|+..||+.+. ..++++.-..  +.+.+   .|..+++.|+.   .   ++.+ ...||.+ |... 
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis--~~~l~---~A~~~~~~l~~~~~~~~~nv~~-~~~d~~~~l~~~-  118 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSPLFP-DTLILGLEIR--VKVSD---YVQDRIRALRAAPAGGFQNIAC-LRSNAMKHLPNF-  118 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGGGST-TSEEEEEESC--HHHHH---HHHHHHHHHHHSTTCCCTTEEE-EECCTTTCHHHH-
T ss_pred             CCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECC--HHHHH---HHHHHHHHHHHHHhcCCCeEEE-EECcHHHhhhhh-
Confidence            45799999999999999998863 4577766544  33333   36667777753   2   2333 4558776 4321 


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEE
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRL  190 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~  190 (421)
                       +....||.|+.|||-.-.+.+.      .+.|.+...|++.+..+|++||.++++... ..|-.|-++.+.+..++...
T Consensus       119 -~~~~~~D~v~~~~~dp~~k~~h------~krr~~~~~~l~~~~~~LkpGG~l~~~td~-~~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          119 -FYKGQLTKMFFLFPDPHFKRTK------HKWRIISPTLLAEYAYVLRVGGLVYTITDV-LELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             -CCTTCEEEEEEESCC-----------------CCCHHHHHHHHHHEEEEEEEEEEESC-HHHHHHHHHHHHTSTTEEEE
T ss_pred             -CCCcCeeEEEEeCCCchhhhhh------hhhhhhhHHHHHHHHHHCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCcccc
Confidence             3457899999999854431110      112222357899999999999999998654 34777888887766555443

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.43  E-value=0.0041  Score=52.76  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ....+.+||=+|=|.=.++..+++. + ..++++.-.+.  ++.+   .++.|++...- ..+. ++.-|+.++......
T Consensus        41 ~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~--~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~  112 (187)
T 2fhp_A           41 PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNF--AALK---VIKENIAITKEPEKFE-VRKMDANRALEQFYE  112 (187)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCH--HHHH---HHHHHHHHHTCGGGEE-EEESCHHHHHHHHHH
T ss_pred             hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCH--HHHH---HHHHHHHHhCCCcceE-EEECcHHHHHHHHHh
Confidence            4456789999999998898888874 2 35777776652  2222   35556655431 1233 445577664221111


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF  173 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY  173 (421)
                      ....||.|+.|.|..-.    +       ...++....  +..+|+++|.+.+........
T Consensus       113 ~~~~fD~i~~~~~~~~~----~-------~~~~~~~l~--~~~~L~~gG~l~~~~~~~~~~  160 (187)
T 2fhp_A          113 EKLQFDLVLLDPPYAKQ----E-------IVSQLEKML--ERQLLTNEAVIVCETDKTVKL  160 (187)
T ss_dssp             TTCCEEEEEECCCGGGC----C-------HHHHHHHHH--HTTCEEEEEEEEEEEETTCCC
T ss_pred             cCCCCCEEEECCCCCch----h-------HHHHHHHHH--HhcccCCCCEEEEEeCCcccc
Confidence            25689999999993311    0       112222221  477999999999998776543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.41  E-value=0.015  Score=52.18  Aligned_cols=132  Identities=9%  Similarity=0.079  Sum_probs=85.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++..  ..+++++-.+  +++.+   .++.++.   ..++ -+...|+.++.    +....
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s--~~~~~---~a~~~~~---~~~~-~~~~~d~~~~~----~~~~~  108 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLS--ERMLT---EAKRKTT---SPVV-CYEQKAIEDIA----IEPDA  108 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESC--HHHHH---HHHHHCC---CTTE-EEEECCGGGCC----CCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECC--HHHHH---HHHHhhc---cCCe-EEEEcchhhCC----CCCCC
Confidence            56799999999999999999873  2366666543  22222   1222222   2233 34456776653    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC---------------C--------c
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA---------------P--------F  173 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~---------------P--------Y  173 (421)
                      ||.|+.+...-..   ++           +..+++.+..+|+|+|.+.|+.....               +        |
T Consensus       109 fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (253)
T 3g5l_A          109 YNVVLSSLALHYI---AS-----------FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY  174 (253)
T ss_dssp             EEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCT
T ss_pred             eEEEEEchhhhhh---hh-----------HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccc
Confidence            9999998743221   11           35788889999999999999843210               0        0


Q ss_pred             --------------------CcccHHHHHHhCCcEEEEEeeCCC
Q 014642          174 --------------------CKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       174 --------------------~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                                          +.-.+..+.+++||.+++.....+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~  218 (253)
T 3g5l_A          175 FNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEP  218 (253)
T ss_dssp             TCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred             cccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence                                223477889999999999876554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.35  E-value=0.044  Score=47.31  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCc
Q 014642           31 WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKE  108 (421)
Q Consensus        31 ~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~  108 (421)
                      ++.......+||=||=|.=.++..|++.   +.++++.-.+  .+..          +..++.|  -.-+...|+.++  
T Consensus        40 ~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s--~~~~----------~~a~~~~~~~~~~~~~d~~~~--  102 (218)
T 3ou2_A           40 RLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGS--AEMI----------AEAGRHGLDNVEFRQQDLFDW--  102 (218)
T ss_dssp             HHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESC--HHHH----------HHHGGGCCTTEEEEECCTTSC--
T ss_pred             HHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCC--HHHH----------HHHHhcCCCCeEEEecccccC--
Confidence            3445667789999999999999999987   3466665443  2222          2222233  123344577665  


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          109 HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       109 ~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                         +....||.|+.++-.--.            ....+..+++.+..+|+|+|.+.++...
T Consensus       103 ---~~~~~~D~v~~~~~l~~~------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          103 ---TPDRQWDAVFFAHWLAHV------------PDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             ---CCSSCEEEEEEESCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---CCCCceeEEEEechhhcC------------CHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence               245789999998632211            1234567889999999999999888543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.35  E-value=0.072  Score=48.20  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=85.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-----HHHHHhhhhHHHHHHHHHhCC----CEEEeecccCC
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-----ETVVKKFKEARSNLDTLKKLG----ASIIHGVDATE  105 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-----eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATk  105 (421)
                      ..++.+||=||=|.=.++..|++.+|...++++.-.+..     +.+.    .+..++   +..|    +.++. .| .-
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~----~a~~~~---~~~~~~~~v~~~~-~d-~~  111 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG----QAWNHL---LAGPLGDRLTVHF-NT-NL  111 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHH----HHHHHH---HTSTTGGGEEEEC-SC-CT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHH----HHHHHH---HhcCCCCceEEEE-CC-hh
Confidence            356789999999999999999998865467888777642     1111    133333   2332    44433 34 11


Q ss_pred             cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--------------
Q 014642          106 MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------  171 (421)
Q Consensus       106 L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------  171 (421)
                      ......+....||.|+.+.+.--.   .+        .   ..+++.+..+++++|.+.++-....              
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~---~~--------~---~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~  177 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYF---AS--------A---NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAM  177 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGS---SC--------H---HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHH
T ss_pred             hhccCCCCCCCEEEEEEccchhhC---CC--------H---HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHH
Confidence            111223345789999998774322   11        0   1356667778888999888642211              


Q ss_pred             ------------CcCcc------cHHHHHHhCCcEEEEEeeC
Q 014642          172 ------------PFCKW------HIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       172 ------------PY~sW------nI~~LAa~aGL~L~~~~~F  195 (421)
                                  +...|      .+..+.+++||.+++...+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          178 IQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence                        11112      5677888999999998877

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=96.29  E-value=0.024  Score=51.58  Aligned_cols=137  Identities=16%  Similarity=0.197  Sum_probs=88.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~L  112 (421)
                      .++.+||=||=|.=.++..|++. + ..++++.-.+ .+ ..+   .+..++   ...|.   ..+...|+.++...   
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s-~~-~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~~---  129 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIA-EV-SIN---DARVRA---RNMKRRFKVFFRAQDSYGRHMD---  129 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESC-HH-HHH---HHHHHH---HTSCCSSEEEEEESCTTTSCCC---
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECC-HH-HHH---HHHHHH---HhcCCCccEEEEECCccccccC---
Confidence            46789999999988888888875 2 3366666544 22 222   133333   33332   23345577776321   


Q ss_pred             ccCcccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC---------------------
Q 014642          113 SKRKFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT---------------------  170 (421)
Q Consensus       113 k~~~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---------------------  170 (421)
                      ....||.|+.++. |...           .+..-+..+++.+..+|+|+|.+.|+..+.                     
T Consensus       130 ~~~~fD~v~~~~~l~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (298)
T 1ri5_A          130 LGKEFDVISSQFSFHYAF-----------STSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIEL  198 (298)
T ss_dssp             CSSCEEEEEEESCGGGGG-----------SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEEC
T ss_pred             CCCCcCEEEECchhhhhc-----------CCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEe
Confidence            3578999999864 2211           123335678999999999999999886441                     


Q ss_pred             -----CC------cC----------------cccHHHHHHhCCcEEEEEeeCC
Q 014642          171 -----AP------FC----------------KWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       171 -----~P------Y~----------------sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                           -|      |.                .-.++.+++++||.+++...|.
T Consensus       199 ~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          199 EKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             CCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             CccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence                 02      11                1256789999999999998776

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.28  E-value=0.088  Score=49.25  Aligned_cols=138  Identities=11%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-hCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-KLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++++||=+|=|.=.++..||+..+....|+|.-+... .+ +.   .   ++..+ ..++.++. -||+.......+ 
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~-~l-~~---l---~~~a~~r~nv~~i~-~Da~~~~~~~~~-  143 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPR-VV-RE---L---LLVAQRRPNIFPLL-ADARFPQSYKSV-  143 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHH-HH-HH---H---HHHHHHCTTEEEEE-CCTTCGGGTTTT-
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHH-HH-HH---H---HHHhhhcCCeEEEE-cccccchhhhcc-
Confidence            456889999999999999999998875557887655432 11 10   0   11111 23555544 588876432222 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------CcCcc-cHHHHHHhCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------PFCKW-HIEELARKHS  186 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY~sW-nI~~LAa~aG  186 (421)
                      ...||+|+.|.|+..             ..   .-+...+..+|+|+|.+.++++.+.      |...- ++++..+++|
T Consensus       144 ~~~~D~I~~d~a~~~-------------~~---~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~g  207 (232)
T 3id6_C          144 VENVDVLYVDIAQPD-------------QT---DIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSN  207 (232)
T ss_dssp             CCCEEEEEECCCCTT-------------HH---HHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTT
T ss_pred             ccceEEEEecCCChh-------------HH---HHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCC
Confidence            357999999988621             11   1234556779999999999986542      33222 3445555779


Q ss_pred             cEEEEEeeCCCC
Q 014642          187 LLRLDCVQFRKE  198 (421)
Q Consensus       187 L~L~~~~~F~~~  198 (421)
                      |.+.+.....|-
T Consensus       208 f~~~~~~~l~p~  219 (232)
T 3id6_C          208 FETIQIINLDPY  219 (232)
T ss_dssp             EEEEEEEECTTT
T ss_pred             CEEEEEeccCCC
Confidence            999999877653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.28  E-value=0.013  Score=51.76  Aligned_cols=134  Identities=17%  Similarity=0.179  Sum_probs=86.6

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +..+.+..+||=||=|.=.++..|++.         +..|-.+++.+          ..++.++.++. .|+..+.    
T Consensus        42 l~~~~~~~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~----------~a~~~~~~~~~-~d~~~~~----   97 (219)
T 1vlm_A           42 VKCLLPEGRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAE----------IARKRGVFVLK-GTAENLP----   97 (219)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHTCC---------EEEESCHHHHH----------HHHHTTCEEEE-CBTTBCC----
T ss_pred             HHHhCCCCcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHH----------HHHhcCCEEEE-cccccCC----
Confidence            334444779999999988888888654         55664333332          22222666554 4776653    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--------------C-----
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------P-----  172 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------P-----  172 (421)
                      +....||.|+.++..--.   ++           ...+++.+..+|+|+|.+.++.....              +     
T Consensus        98 ~~~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T 1vlm_A           98 LKDESFDFALMVTTICFV---DD-----------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA  163 (219)
T ss_dssp             SCTTCEEEEEEESCGGGS---SC-----------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTC
T ss_pred             CCCCCeeEEEEcchHhhc---cC-----------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhccc
Confidence            345789999998652221   11           24688888899999999999864321              1     


Q ss_pred             --cCcccHHHHHHhCCcEEEEEeeCCCCCCCCCcc
Q 014642          173 --FCKWHIEELARKHSLLRLDCVQFRKEDYPGYSN  205 (421)
Q Consensus       173 --Y~sWnI~~LAa~aGL~L~~~~~F~~~~YPGY~h  205 (421)
                        ++.-.+.++.+++||..++.....  ..|+|..
T Consensus       164 ~~~~~~~l~~~l~~~Gf~~~~~~~~~--~~~p~~~  196 (219)
T 1vlm_A          164 RFFSTEELMDLMRKAGFEEFKVVQTL--FKHPSEL  196 (219)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEEEEEC--CSCGGGC
T ss_pred             ccCCHHHHHHHHHHCCCeEEEEeccc--CCCCCcc
Confidence              233467778889999998876654  2355553

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.25  E-value=0.012  Score=50.77  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642           40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR  119 (421)
Q Consensus        40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr  119 (421)
                      +||=||=|.=.++..|++.  .+.++++.-.+  ..+.+   .+..++....-.+-.-+...|+.++.    +....||.
T Consensus        46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s--~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ--SDFSIRALDFS--KHMNE---IALKNIADANLNDRIQIVQGDVHNIP----IEDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH--SEEEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEECBTTBCS----SCTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHc--CCCeEEEEECC--HHHHH---HHHHHHHhccccCceEEEEcCHHHCC----CCcccccE
Confidence            9999999999999999987  23455554433  33332   24444443322212334556777754    34578999


Q ss_pred             EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      |+.+...--.   ++           ...+++.+..+|+|+|.+.|+-.
T Consensus       115 v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          115 IVSRGSVFFW---ED-----------VATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             EEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECchHhhc---cC-----------HHHHHHHHHHhCCCCCEEEEEec
Confidence            9998743221   11           24588888999999999999743

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.24  E-value=0.0065  Score=56.32  Aligned_cols=147  Identities=15%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeecccCCcCcc---
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG----ASIIHGVDATEMKEH---  109 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATkL~~~---  109 (421)
                      +..+||=+|=|.=.+++.|++... +.+|++.-.+  +++.+   -++.|++.+...|    +.| +..|+.++...   
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~--~~~~~---~a~~n~~~~~~~~l~~~v~~-~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERS--QEMAE---FARRSLELPDNAAFSARIEV-LEADVTLRAKARVE  108 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESS--HHHHH---HHHHHTTSGGGTTTGGGEEE-EECCTTCCHHHHHH
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHHHHhhhhCCCcceEEE-EeCCHHHHhhhhhh
Confidence            456999999999999999998863 3466666554  33332   3566665532233    444 45588776211   


Q ss_pred             cccccCcccEEEEcCCCCCCCCCc--ccHHHHHHh--HHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKE--EDDEVIRMH--MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH  185 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkE--d~~~~I~~n--r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a  185 (421)
                      ..+....||.||.|-|.....+..  +..+.+..|  ...+..|++.+..+|+++|.+.+.+...   ..-.+.+++++.
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~l~~~  185 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---SVAEIIAACGSR  185 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---GHHHHHHHHTTT
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---HHHHHHHHHHhc
Confidence            113457899999998876532111  111111111  1126789999999999999999876432   222344555443


Q ss_pred             CcEEEEEee
Q 014642          186 SLLRLDCVQ  194 (421)
Q Consensus       186 GL~L~~~~~  194 (421)
                       +...+...
T Consensus       186 -~~~~~i~~  193 (260)
T 2ozv_A          186 -FGGLEITL  193 (260)
T ss_dssp             -EEEEEEEE
T ss_pred             -CCceEEEE
Confidence             55555443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.24  E-value=0.017  Score=51.71  Aligned_cols=137  Identities=14%  Similarity=0.042  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..+..+||=||=|.=.++..|++.++  .+++++  |-.++..+   .+..++....- ..+.+ ...|+.++..     
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gv--D~s~~~l~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~-----  100 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGI--DMSSLFTA---QAKRRAEELGVSERVHF-IHNDAAGYVA-----  100 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEE--ESCHHHHH---HHHHHHHHTTCTTTEEE-EESCCTTCCC-----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEE--eCCHHHHH---HHHHHHHhcCCCcceEE-EECChHhCCc-----
Confidence            35678999999999999999998873  456554  43233332   24444332211 12333 4457777642     


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC--CCC-----------------cC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT--TAP-----------------FC  174 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~P-----------------Y~  174 (421)
                      ...||.|+.+..---.   .+           ...+++.+..+|+|+|.+.|+-..  ..|                 ++
T Consensus       101 ~~~fD~V~~~~~~~~~---~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (256)
T 1nkv_A          101 NEKCDVAACVGATWIA---GG-----------FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT  166 (256)
T ss_dssp             SSCEEEEEEESCGGGT---SS-----------SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred             CCCCCEEEECCChHhc---CC-----------HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence            5789999985432111   01           257788899999999999987421  111                 12


Q ss_pred             cccHHHHHHhCCcEEEEEeeCCCC
Q 014642          175 KWHIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       175 sWnI~~LAa~aGL~L~~~~~F~~~  198 (421)
                      .-.+..+.+++||..++....+..
T Consensus       167 ~~~~~~~l~~aGf~~~~~~~~~~~  190 (256)
T 1nkv_A          167 LPGLVGAFDDLGYDVVEMVLADQE  190 (256)
T ss_dssp             HHHHHHHHHTTTBCCCEEEECCHH
T ss_pred             HHHHHHHHHHCCCeeEEEEeCCHH
Confidence            234667888899988776554433

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=96.23  E-value=0.012  Score=54.77  Aligned_cols=135  Identities=12%  Similarity=0.152  Sum_probs=86.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH---hCCCEEEeecccCCcCccccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK---KLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr---~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+||=||=|.=.++..|++.   +.++++.-++ .+ +.+   .++.++....   ...+. +..-|+.++..     .
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s-~~-~~~---~a~~~~~~~~~~~~~~v~-~~~~d~~~~~~-----~  148 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL---GWEVTALELS-TS-VLA---AFRKRLAEAPADVRDRCT-LVQGDMSAFAL-----D  148 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT---TCCEEEEESC-HH-HHH---HHHHHHHTSCHHHHTTEE-EEECBTTBCCC-----S
T ss_pred             CCcEEEEeccCCHHHHHHHHc---CCeEEEEECC-HH-HHH---HHHHHHhhcccccccceE-EEeCchhcCCc-----C
Confidence            349999999999999999987   3467766554 22 222   1333332211   01233 44557777642     4


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC----------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP----------------------  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P----------------------  172 (421)
                      ..||.||+.+.-....           ...-+..+++.+..+|+|+|.+.|+......                      
T Consensus       149 ~~fD~v~~~~~~~~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  217 (299)
T 3g2m_A          149 KRFGTVVISSGSINEL-----------DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL  217 (299)
T ss_dssp             CCEEEEEECHHHHTTS-----------CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------C
T ss_pred             CCcCEEEECCcccccC-----------CHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEE
Confidence            7899999653211110           1233567888999999999999998754320                      


Q ss_pred             ----------------------------------cCcccHHHHHHhCCcEEEEEeeCCC
Q 014642          173 ----------------------------------FCKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       173 ----------------------------------Y~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                                                        |+.-.++.+.+++||.+++..+|..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~  276 (299)
T 3g2m_A          218 HVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS  276 (299)
T ss_dssp             CEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             EEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence                                              1233577899999999999988763

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.22  E-value=0.0042  Score=61.52  Aligned_cols=136  Identities=16%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEE-EeecccCCcCcccccccC
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASI-IHGVDATEMKEHSELSKR  115 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~V-lhgVDATkL~~~~~Lk~~  115 (421)
                      ..+||=+|=|.=.|+..|++.. .+..|++.-.+  +...+   .++.|++...-.+ +.| ++.-|+.+     .+...
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s--~~al~---~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~~~  291 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDES--PMAVA---SSRLNVETNMPEALDRCEFMINNALS-----GVEPF  291 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESC--HHHHH---HHHHHHHHHCGGGGGGEEEEECSTTT-----TCCTT
T ss_pred             CCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECc--HHHHH---HHHHHHHHcCCCcCceEEEEechhhc-----cCCCC
Confidence            3699999999999999999886 34567766554  22332   3555655432111 112 23345544     23457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc------cHHHHHHhCCcEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW------HIEELARKHSLLR  189 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW------nI~~LAa~aGL~L  189 (421)
                      +||.|+.|.|.-....       +  ...+...||+.+..+|+|+|.+.|......+|..|      +++.+++..||.+
T Consensus       292 ~fD~Ii~nppfh~~~~-------~--~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg~~~~~a~~~~F~V  362 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHA-------L--TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVV  362 (375)
T ss_dssp             CEEEEEECCCC----------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHSCCEEEEECSSEEE
T ss_pred             CeeEEEECCCcccCcc-------c--CHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcCCEEEEeeCCCEEE
Confidence            8999999999543211       1  12234578999999999999999987766666543      3444555666666


Q ss_pred             EEEe
Q 014642          190 LDCV  193 (421)
Q Consensus       190 ~~~~  193 (421)
                      .+..
T Consensus       363 ~~~~  366 (375)
T 4dcm_A          363 LKAV  366 (375)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6553

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.21  E-value=0.013  Score=51.74  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeecccCCcCcc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-----KKLGASIIHGVDATEMKEH  109 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-----r~~Gv~VlhgVDATkL~~~  109 (421)
                      ..+..+||-||=|.=.++..|++..+...++++.-.+  +.+.+   .++.|+..+     ....+.+. ..|++...  
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~--  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI--KELVD---DSVNNVRKDDPTLLSSGRVQLV-VGDGRMGY--  146 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHHCTHHHHTSSEEEE-ESCGGGCC--
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCC--HHHHH---HHHHHHHhhcccccCCCcEEEE-ECCcccCc--
Confidence            4467899999999999999999887644577776554  23332   244555542     22344444 44776432  


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                        .....||+|+.+.|...                    ++..+..+|+|+|.+.++..+..+
T Consensus       147 --~~~~~fD~i~~~~~~~~--------------------~~~~~~~~LkpgG~lv~~~~~~~~  187 (226)
T 1i1n_A          147 --AEEAPYDAIHVGAAAPV--------------------VPQALIDQLKPGGRLILPVGPAGG  187 (226)
T ss_dssp             --GGGCCEEEEEECSBBSS--------------------CCHHHHHTEEEEEEEEEEESCTTS
T ss_pred             --ccCCCcCEEEECCchHH--------------------HHHHHHHhcCCCcEEEEEEecCCC
Confidence              22467999999987632                    224567899999999999987643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.19  E-value=0.0039  Score=61.39  Aligned_cols=160  Identities=16%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             cceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-C-CCEEEeecccCC
Q 014642           28 EEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-L-GASIIHGVDATE  105 (421)
Q Consensus        28 ~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~-Gv~VlhgVDATk  105 (421)
                      ...++..+..+.+||=+|=|.=.||+.||+. | +..|+|.-.+. + ..+   .++.|++...- . .+. +..-|+.+
T Consensus       211 ~~~~l~~~~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~-~-al~---~a~~n~~~ngl~~~~v~-~~~~D~~~  282 (396)
T 3c0k_A          211 SRLATRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQ-E-ALD---IARQNVELNKLDLSKAE-FVRDDVFK  282 (396)
T ss_dssp             HHHHHHHHCTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCH-H-HHH---HHHHHHHHTTCCGGGEE-EEESCHHH
T ss_pred             HHHHHHHhhCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCH-H-HHH---HHHHHHHHcCCCccceE-EEECCHHH
Confidence            3456666677889999999988999999875 2 44676665542 2 222   35666654211 1 233 34457766


Q ss_pred             cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-Ccc-c-HHHHH
Q 014642          106 MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKW-H-IEELA  182 (421)
Q Consensus       106 L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sW-n-I~~LA  182 (421)
                      +.........+||.||.|-|..+. ++.+    +......+..++..+..+|+|+|.|.++.+....- +.| + |.+.+
T Consensus       283 ~~~~~~~~~~~fD~Ii~dpP~~~~-~~~~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~  357 (396)
T 3c0k_A          283 LLRTYRDRGEKFDVIVMDPPKFVE-NKSQ----LMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAA  357 (396)
T ss_dssp             HHHHHHHTTCCEEEEEECCSSTTT-CSSS----SSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCC-ChhH----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHH
Confidence            532111124689999999998774 2221    11223445688888999999999999998876532 222 2 33466


Q ss_pred             HhCC--cEEEEEeeCCCCCCC
Q 014642          183 RKHS--LLRLDCVQFRKEDYP  201 (421)
Q Consensus       183 a~aG--L~L~~~~~F~~~~YP  201 (421)
                      .+.|  +.++... -.+.++|
T Consensus       358 ~~~g~~~~~i~~~-~~~~d~p  377 (396)
T 3c0k_A          358 IDAGRDVQFIEQF-RQAADHP  377 (396)
T ss_dssp             HHHTCCEEEEEEE-ECCTTSC
T ss_pred             HHcCCeEEEEEEC-CCCCCCC
Confidence            6677  4444443 2344555

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.16  E-value=0.012  Score=51.43  Aligned_cols=115  Identities=14%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +.+..+..+||=||=|.=.++..|+      .++++.-.+..                    ++.+. ..|+.++.    
T Consensus        62 l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~-~~d~~~~~----  110 (215)
T 2zfu_A           62 LRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVT-VCDMAQVP----  110 (215)
T ss_dssp             HHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEE-ESCTTSCS----
T ss_pred             HhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEE-EeccccCC----
Confidence            4445667899999999888777773      46777766543                    34433 34666643    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEE
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLD  191 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~  191 (421)
                      +....||.|+.++..- .   ++           ...+++.+..+|+|+|.+.|+-......+.-.+.++.+++||.++.
T Consensus       111 ~~~~~fD~v~~~~~l~-~---~~-----------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~  175 (215)
T 2zfu_A          111 LEDESVDVAVFCLSLM-G---TN-----------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVS  175 (215)
T ss_dssp             CCTTCEEEEEEESCCC-S---SC-----------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEE
T ss_pred             CCCCCEeEEEEehhcc-c---cC-----------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEE
Confidence            3457899999987642 1   11           2467888899999999999975543323455778899999999887


Q ss_pred             E
Q 014642          192 C  192 (421)
Q Consensus       192 ~  192 (421)
                      .
T Consensus       176 ~  176 (215)
T 2zfu_A          176 K  176 (215)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.15  E-value=0.023  Score=54.12  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH------h-----CCCEEEeecccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK------K-----LGASIIHGVDAT  104 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr------~-----~Gv~VlhgVDAT  104 (421)
                      .++.+||=||=|.=.++.+|++..|....|+|.-.+  ++..+   .++.|++.+.      .     ..+.++ ..|+.
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~ln~~~~~~~~v~~~-~~d~~  177 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR--KDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVDFI-HKDIS  177 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESS--HHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEEEE-ESCTT
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCC--HHHHH---HHHHHHHHhhcccccccccccCCceEEE-ECChH
Confidence            467899999999999999999987654567776443  33333   3667777653      1     234443 44777


Q ss_pred             CcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          105 EMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       105 kL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ++..  .+....||.|+.|.|+.-                   .++..+..+|+|+|.+.+...+
T Consensus       178 ~~~~--~~~~~~fD~V~~~~~~~~-------------------~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          178 GATE--DIKSLTFDAVALDMLNPH-------------------VTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             CCC---------EEEEEECSSSTT-------------------TTHHHHGGGEEEEEEEEEEESS
T ss_pred             Hccc--ccCCCCeeEEEECCCCHH-------------------HHHHHHHHhcCCCcEEEEEeCC
Confidence            6532  233467999999877432                   1678889999999999877654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.15  E-value=0.006  Score=59.94  Aligned_cols=149  Identities=11%  Similarity=0.032  Sum_probs=94.7

Q ss_pred             ceeeeccC-CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCc
Q 014642           29 EKWIMHYS-SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEM  106 (421)
Q Consensus        29 ~K~i~~Ys-s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL  106 (421)
                      .+++..+. .+.+||=+|=|.=.||+.||+. | +..++|.-.+. +.+ +   .++.|++...-. ++. +..-|+.++
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~-~~l-~---~a~~n~~~n~~~~~v~-~~~~d~~~~  279 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSP-RAI-E---TAKENAKLNGVEDRMK-FIVGSAFEE  279 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCH-HHH-H---HHHHHHHHTTCGGGEE-EEESCHHHH
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCH-HHH-H---HHHHHHHHcCCCccce-EEECCHHHH
Confidence            44455555 6789999999999999999976 3 44677766542 222 2   355665432111 233 334466654


Q ss_pred             CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-Ccc-c-HHHHHH
Q 014642          107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKW-H-IEELAR  183 (421)
Q Consensus       107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sW-n-I~~LAa  183 (421)
                      .....-...+||.||.|-|..+. ++.    .+.........++..+..+|+|+|.+.++.+....- +.| + +.+.+.
T Consensus       280 ~~~~~~~~~~fD~Vi~dpP~~~~-~~~----~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~  354 (396)
T 2as0_A          280 MEKLQKKGEKFDIVVLDPPAFVQ-HEK----DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGA  354 (396)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSCS-SGG----GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCEEEECCCCCCC-CHH----HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22111124689999999998774 222    344455667889999999999999999998876532 222 2 335666


Q ss_pred             hCCcEEE
Q 014642          184 KHSLLRL  190 (421)
Q Consensus       184 ~aGL~L~  190 (421)
                      ..|..+.
T Consensus       355 ~~~~~~~  361 (396)
T 2as0_A          355 KAGKFLK  361 (396)
T ss_dssp             HTTEEEE
T ss_pred             HcCCeEE
Confidence            7776554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.15  E-value=0.0038  Score=60.15  Aligned_cols=113  Identities=21%  Similarity=0.326  Sum_probs=75.0

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=||=|.=.++..|++.. ...++++.-.+  ....+   .++.|+... ...+.+ +..|+...      ....|
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s--~~~l~---~a~~~~~~~-~~~~~~-~~~d~~~~------~~~~f  262 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVS--APAVE---ASRATLAAN-GVEGEV-FASNVFSE------VKGRF  262 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESB--HHHHH---HHHHHHHHT-TCCCEE-EECSTTTT------CCSCE
T ss_pred             CCeEEEecCccCHHHHHHHHHC-CCCEEEEEECC--HHHHH---HHHHHHHHh-CCCCEE-EEcccccc------ccCCe
Confidence            4689999999999999998875 23356655443  22222   244454331 122444 44555442      14689


Q ss_pred             cEEEEcCCCC-CCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642          118 DRIIFNFPHA-GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC  174 (421)
Q Consensus       118 DrIIFNFPH~-G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~  174 (421)
                      |.|+.|.|.. |.          ..+......|++.+..+|+|+|.+.|......||.
T Consensus       263 D~Iv~~~~~~~g~----------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~  310 (343)
T 2pjd_A          263 DMIISNPPFHDGM----------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP  310 (343)
T ss_dssp             EEEEECCCCCSSS----------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH
T ss_pred             eEEEECCCcccCc----------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH
Confidence            9999999953 32          23455678999999999999999999887766654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.14  E-value=0.054  Score=47.81  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=69.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++.+. +.++++.-.+  +.+.+   .++.+   ++..+-.-+...|+.++..    . 
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~---~~~~~~~~~~~~d~~~~~~----~-  107 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMS--EKMLE---IAKNR---FRGNLKVKYIEADYSKYDF----E-  107 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESC--HHHHH---HHHHH---TCSCTTEEEEESCTTTCCC----C-
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHh---hccCCCEEEEeCchhccCC----C-
Confidence            44568999999999999999999863 4566665543  22222   12222   2223322344557777642    2 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ..||.|+.++..--.   .         ..-...+++.+..+|+|+|.+.++-.
T Consensus       108 ~~fD~v~~~~~l~~~---~---------~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          108 EKYDMVVSALSIHHL---E---------DEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             SCEEEEEEESCGGGS---C---------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceEEEEeCccccC---C---------HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            789999999753332   1         11124678888999999999988753

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.13  E-value=0.045  Score=47.26  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=+|=|.=.++..++.. + ...|+|.-.+  +++.+   .++.|++...-..+. +..-|+.++...  +...
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~~~--~~~~  112 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESD--QRSAA---VIARNIEALGLSGAT-LRRGAVAAVVAA--GTTS  112 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECC--HHHHH---HHHHHHHHHTCSCEE-EEESCHHHHHHH--CCSS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECC--HHHHH---HHHHHHHHcCCCceE-EEEccHHHHHhh--ccCC
Confidence            46789999999998888877764 2 3457666554  23332   356666654332333 445677765322  2357


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHh--ccCCCCeEEEEecCCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASG--MLRPRGEVHVSHKTTA  171 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~--lL~~~GeIHVTLk~g~  171 (421)
                      .||.|+.|.|....             ...+..++..+..  +|+|+|.+.|......
T Consensus       113 ~fD~i~~~~p~~~~-------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          113 PVDLVLADPPYNVD-------------SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CCSEEEECCCTTSC-------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CccEEEECCCCCcc-------------hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            89999999995542             1334566666666  9999999999887654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.10  E-value=0.012  Score=52.62  Aligned_cols=133  Identities=15%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++..  ...+++.-.+  +.+.+   .++.++.......+ -+...|+..+.    +....
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~-~~~~~d~~~~~----~~~~~  146 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDIT--EDFLV---QAKTYLGEEGKRVR-NYFCCGLQDFT----PEPDS  146 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESC--HHHHH---HHHHHTGGGGGGEE-EEEECCGGGCC----CCSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCC--HHHHH---HHHHHhhhcCCceE-EEEEcChhhcC----CCCCC
Confidence            46799999999999999998775  3467665443  22222   13333322211112 24455766654    23468


Q ss_pred             ccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-------C-----cCcccHHHHH
Q 014642          117 FDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-------P-----FCKWHIEELA  182 (421)
Q Consensus       117 FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-------P-----Y~sWnI~~LA  182 (421)
                      ||.|+.++.  |+.              ...+..+++.+..+|+|+|.+.|+-....       .     ++.-.+.++.
T Consensus       147 fD~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  212 (241)
T 2ex4_A          147 YDVIWIQWVIGHLT--------------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII  212 (241)
T ss_dssp             EEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHH
T ss_pred             EEEEEEcchhhhCC--------------HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHH
Confidence            999999943  332              12246788999999999999988543211       0     1223567788


Q ss_pred             HhCCcEEEEEeeC
Q 014642          183 RKHSLLRLDCVQF  195 (421)
Q Consensus       183 a~aGL~L~~~~~F  195 (421)
                      +++||.+++....
T Consensus       213 ~~aGf~~~~~~~~  225 (241)
T 2ex4_A          213 CSAGLSLLAEERQ  225 (241)
T ss_dssp             HHTTCCEEEEEEC
T ss_pred             HHcCCeEEEeeec
Confidence            9999999988765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.08  E-value=0.02  Score=51.73  Aligned_cols=135  Identities=11%  Similarity=0.051  Sum_probs=85.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|+.... +..++|.  |..++..+   -++.|++.+.-.++.++.+ |+.++..... ...
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~v--D~s~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~~~~~~-~~~  140 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIV--DSLNKRIT---FLEKLSEALQLENTTFCHD-RAETFGQRKD-VRE  140 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEE--ESCHHHHH---HHHHHHHHHTCSSEEEEES-CHHHHTTCTT-TTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEE--eCCHHHHH---HHHHHHHHcCCCCEEEEec-cHHHhccccc-ccC
Confidence            4678999999998888888887543 4456655  43333332   3556666654334666554 7766542111 136


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .||.|+.+.  +.     +           +..+++.+..+|+|+|.+.+.......-..-.+.+..+..|+.+.+...|
T Consensus       141 ~fD~V~~~~--~~-----~-----------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~  202 (240)
T 1xdz_A          141 SYDIVTARA--VA-----R-----------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSF  202 (240)
T ss_dssp             CEEEEEEEC--CS-----C-----------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CccEEEEec--cC-----C-----------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEE
Confidence            799999865  11     1           45889999999999999987632211111123445667889999888766


Q ss_pred             C
Q 014642          196 R  196 (421)
Q Consensus       196 ~  196 (421)
                      .
T Consensus       203 ~  203 (240)
T 1xdz_A          203 K  203 (240)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.06  E-value=0.046  Score=53.40  Aligned_cols=139  Identities=13%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--------CCCEEEeecccCCcC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK--------LGASIIHGVDATEMK  107 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--------~Gv~VlhgVDATkL~  107 (421)
                      .+..+||=||=|.=.++..|++.++....++++-.. .+.+ +   .+..|++.+..        .++.++ .-|+.++.
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s-~~~l-~---~a~~~~~~~~~~~~g~~~~~~v~~~-~~d~~~l~  155 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDML-DNQL-E---VARKYVEYHAEKFFGSPSRSNVRFL-KGFIENLA  155 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECC-HHHH-H---HHHHTHHHHHHHHHSSTTCCCEEEE-ESCTTCGG
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECC-HHHH-H---HHHHHHHHhhhhcccccCCCceEEE-EccHHHhh
Confidence            356799999999999999999988655677776554 2222 2   24455554421        244444 34888764


Q ss_pred             ccc--ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC--------------
Q 014642          108 EHS--ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA--------------  171 (421)
Q Consensus       108 ~~~--~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~--------------  171 (421)
                      ...  .+....||.|+.|+...-.   .+           ...+++.+..+|+|+|.+.++-....              
T Consensus       156 ~~~~~~~~~~~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~  221 (383)
T 4fsd_A          156 TAEPEGVPDSSVDIVISNCVCNLS---TN-----------KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILY  221 (383)
T ss_dssp             GCBSCCCCTTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHH
T ss_pred             hcccCCCCCCCEEEEEEccchhcC---CC-----------HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHh
Confidence            321  3456789999999765432   11           24788899999999999988642211              


Q ss_pred             ------CcCcccHHHHHHhCCcEEEEEee
Q 014642          172 ------PFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       172 ------PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                            .+..-++.++.+++||..++...
T Consensus       222 ~~~~~~~~~~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          222 GECLGGALYLEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred             hcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence                  12223566788899997665543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.06  E-value=0.051  Score=47.42  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=79.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +.+.+   .+..++.    .++.+ ...|+.++..    . ..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~~----~~~~~-~~~d~~~~~~----~-~~  106 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPS--REMRM---IAKEKLP----KEFSI-TEGDFLSFEV----P-TS  106 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSC--HHHHH---HHHHHSC----TTCCE-ESCCSSSCCC----C-SC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCC--HHHHH---HHHHhCC----CceEE-EeCChhhcCC----C-CC
Confidence            5679999999999999999986   3466665443  22222   1222222    24544 3457777632    2 78


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC------------------------
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP------------------------  172 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P------------------------  172 (421)
                      ||.|+.+...--.   .+         .-...+++.+..+|+|+|.+.|+...-.+                        
T Consensus       107 fD~v~~~~~l~~~---~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (220)
T 3hnr_A          107 IDTIVSTYAFHHL---TD---------DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQ  174 (220)
T ss_dssp             CSEEEEESCGGGS---CH---------HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eEEEEECcchhcC---Ch---------HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcc
Confidence            9999999643322   10         11145788889999999999998532111                        


Q ss_pred             ----cCcccHHHHHHhCCcEEEEEe
Q 014642          173 ----FCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       173 ----Y~sWnI~~LAa~aGL~L~~~~  193 (421)
                          ++.=.+.++.+++||.++...
T Consensus       175 ~~~~~~~~~~~~~l~~aGf~v~~~~  199 (220)
T 3hnr_A          175 TEYYTRIPVMQTIFENNGFHVTFTR  199 (220)
T ss_dssp             HSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHCCCEEEEee
Confidence                011246678888999877664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=96.05  E-value=0.026  Score=49.76  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .....+||=||=|.=.++..|++.    .++++.-.+  +++.+   .++.++.... ..+.++ ..|+.++.    +. 
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~~-~~d~~~~~----~~-   94 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH----YEVTGVDLS--EEMLE---IAQEKAMETN-RHVDFW-VQDMRELE----LP-   94 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESC--HHHHH---HHHHHHHHTT-CCCEEE-ECCGGGCC----CS-
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECC--HHHHH---HHHHhhhhcC-CceEEE-EcChhhcC----CC-
Confidence            345689999999999999999876    356555443  22322   2444443322 235444 44776653    22 


Q ss_pred             CcccEEEEcC---CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          115 RKFDRIIFNF---PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFNF---PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ..||.|+.++   .|..             +..-+..+++.+..+|+|+|.+.++.
T Consensus        95 ~~fD~v~~~~~~~~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQ-------------TEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             SCEEEEEECTTGGGGCC-------------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEEeCCchhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            6799999875   3432             12234678889999999999998854

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.00  E-value=0.011  Score=50.21  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=69.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..+..+||=+|=|.=.++..|++. + ..++++.-.+  +++.+   .++.|++...-. .+. +..-|+.+.-.   ..
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~~---~~   97 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKN--RKAQA---IIQDNIIMTKAENRFT-LLKMEAERAID---CL   97 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCC--HHHHH---HHHHHHHTTTCGGGEE-EECSCHHHHHH---HB
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCceE-EEECcHHHhHH---hh
Confidence            456789999999999999999876 3 3467776554  22222   244554432111 133 33446665211   11


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                      ...||.|+.|.|...           ....+++..+..  ..+|+++|.+.++......
T Consensus        98 ~~~fD~i~~~~~~~~-----------~~~~~~~~~l~~--~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           98 TGRFDLVFLDPPYAK-----------ETIVATIEALAA--KNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             CSCEEEEEECCSSHH-----------HHHHHHHHHHHH--TTCEEEEEEEEEEEETTCC
T ss_pred             cCCCCEEEECCCCCc-----------chHHHHHHHHHh--CCCcCCCcEEEEEECCccc
Confidence            356999999988521           112333444433  5899999999998876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.00  E-value=0.041  Score=46.15  Aligned_cols=127  Identities=16%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||=||=|.=.++..|++.++ +..+++.-.+  ++..+   .++.|+.   +.|..  |...-|+..   .....
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~--~~~~~---~a~~~~~---~~~~~~~~~~~~d~~~---~~~~~   91 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEIS--EERRE---RILSNAI---NLGVSDRIAVQQGAPR---AFDDV   91 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSC--HHHHH---HHHHHHH---TTTCTTSEEEECCTTG---GGGGC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCC--HHHHH---HHHHHHH---HhCCCCCEEEecchHh---hhhcc
Confidence            4567999999999999999998873 4466665444  22322   2444544   33432  344455543   11111


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...||.|+.+++.-.                  ..+++.+..+|+++|.+.++.....  +...+..+-++.|+.+.+..
T Consensus        92 ~~~~D~i~~~~~~~~------------------~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  151 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTA------------------PGVFAAAWKRLPVGGRLVANAVTVE--SEQMLWALRKQFGGTISSFA  151 (178)
T ss_dssp             CSCCSEEEECC-TTC------------------TTHHHHHHHTCCTTCEEEEEECSHH--HHHHHHHHHHHHCCEEEEEE
T ss_pred             CCCCCEEEECCcccH------------------HHHHHHHHHhcCCCCEEEEEeeccc--cHHHHHHHHHHcCCeeEEEE
Confidence            278999998876421                  3678888899999999998776532  23344555566677666543


Q ss_pred             e
Q 014642          194 Q  194 (421)
Q Consensus       194 ~  194 (421)
                      .
T Consensus       152 ~  152 (178)
T 3hm2_A          152 I  152 (178)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.98  E-value=0.023  Score=47.75  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCC-cCccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATE-MKEHSEL  112 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATk-L~~~~~L  112 (421)
                      ..+..+||-+|=|.=.++..|++..   ..+++.-.+.  +..+   .+..|+....- ..+.+ ...|+.+ +..    
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~--~~~~---~a~~~~~~~~~~~~~~~-~~~d~~~~~~~----   97 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNP--EAIS---TTEMNLQRHGLGDNVTL-MEGDAPEALCK----   97 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCH--HHHH---HHHHHHHHTTCCTTEEE-EESCHHHHHTT----
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCH--HHHH---HHHHHHHHcCCCcceEE-EecCHHHhccc----
Confidence            3467799999999999999998875   4677765542  2222   24445443321 12333 3346554 211    


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLR  189 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L  189 (421)
                       ...||.|+.+.|.-              +   +..+++.+..+|+++|.+.+....  +...+.+.++.++.|+.+
T Consensus        98 -~~~~D~v~~~~~~~--------------~---~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~  154 (192)
T 1l3i_A           98 -IPDIDIAVVGGSGG--------------E---LQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFDV  154 (192)
T ss_dssp             -SCCEEEEEESCCTT--------------C---HHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCCC
T ss_pred             -CCCCCEEEECCchH--------------H---HHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCce
Confidence             14799999986531              0   257888999999999999988754  235567788888888843

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.98  E-value=0.01  Score=56.61  Aligned_cols=114  Identities=19%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeecccCCcCccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK----KLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr----~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+||.||=|+=.++..|+++.+ ..+|++.-.|.  ++.+   -+++|+..+.    ...++++.+ |+.+.-..   
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~~~---~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~---  159 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG--LVIE---AARKYLKQTSCGFDDPRAEIVIA-NGAEYVRK---  159 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHGGG---
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh---
Confidence            457999999999999999998753 45788777663  2222   2445555442    234666555 66553111   


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ...+||.||.|.|+.+. +..        .......||+.+..+|+|+|.+.+....
T Consensus       160 ~~~~fD~Ii~d~~~~~~-~~~--------~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          160 FKNEFDVIIIDSTDPTA-GQG--------GHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             CSSCEEEEEEEC-------------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCceEEEEcCCCccc-Cch--------hhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            24679999999875421 110        0112368999999999999999887543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=95.96  E-value=0.016  Score=49.65  Aligned_cols=116  Identities=20%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCC--------CcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSA--------SNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM  106 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~--------~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL  106 (421)
                      ..++.+||-||=|.=.++..|++.++..        ..|+|.-.+...                ...++.++-..|++.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------------~~~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------------PLEGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------------CCTTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------------cCCCCeEEEeccCCCH
Confidence            3457899999999999999999987642        578877666421                0124554424566554


Q ss_pred             Cccc----ccccCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          107 KEHS----ELSKRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       107 ~~~~----~Lk~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ....    .+....||.|+.|+ ||+.+  ..  .........++..+++.+..+|+|+|.+.++...+
T Consensus        84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           84 RTSQRILEVLPGRRADVILSDMAPNATG--FR--DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHHHSGGGCEEEEEECCCCCCCS--CH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHHHhcCCCCCcEEEeCCCCCCCC--Cc--ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            2110    12346899999998 45432  11  01122234566789999999999999999987665

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.96  E-value=0.025  Score=51.88  Aligned_cols=131  Identities=13%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+||=||=|.=.++..|++.   +..++++-.+  +++.+   .+..++   +..|.   .-+...|+.++..   +..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~---~~~  134 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLS--AQMID---RAKQAA---EAKGVSDNMQFIHCAAQDVAS---HLE  134 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHH---HC-CCGGGEEEEESCGGGTGG---GCS
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHH---HhcCCCcceEEEEcCHHHhhh---hcC
Confidence            569999999999999999987   3467766544  22222   133333   33343   2345567777652   345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC------------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT------------------------  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------------------------  170 (421)
                      ..||.|+.+...--.   .+           ...+++.+..+|+|+|.+.|+..+.                        
T Consensus       135 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (285)
T 4htf_A          135 TPVDLILFHAVLEWV---AD-----------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKK  200 (285)
T ss_dssp             SCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC-
T ss_pred             CCceEEEECchhhcc---cC-----------HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccc
Confidence            789999998654332   11           1468888999999999999876321                        


Q ss_pred             -------CCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          171 -------APFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       171 -------~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                             .+++.-.+..+.+++||.+++...+.
T Consensus       201 ~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          201 KRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             ---CCCSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred             cccCCCCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence                   11233467888999999999887764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=95.94  E-value=0.078  Score=49.63  Aligned_cols=135  Identities=15%  Similarity=0.140  Sum_probs=83.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++.+. ...++++-.+   .+.+   .++.++....-. .+++. ..|+.++.    +. 
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~---~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~----~~-  230 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA---SVLE---VAKENARIQGVASRYHTI-AGSAFEVD----YG-  230 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH---HHHH---HHHHHHHHHTCGGGEEEE-ESCTTTSC----CC-
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH---HHHH---HHHHHHHhcCCCcceEEE-ecccccCC----CC-
Confidence            5678999999999999999999873 3456655443   3333   245555443211 24433 34666542    22 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC-----------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA-----------------------  171 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~-----------------------  171 (421)
                      ..||.|+.+...-.. .           ..-...+++.+..+|+|+|.+.|.-....                       
T Consensus       231 ~~~D~v~~~~~l~~~-~-----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (335)
T 2r3s_A          231 NDYDLVLLPNFLHHF-D-----------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNG  298 (335)
T ss_dssp             SCEEEEEEESCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSC
T ss_pred             CCCcEEEEcchhccC-C-----------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCC
Confidence            239999996653322 1           11234677888899999998887643211                       


Q ss_pred             -CcCcccHHHHHHhCCcEEEEEeeC
Q 014642          172 -PFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       172 -PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                       .++.=++.++.+++||..++..+.
T Consensus       299 ~~~t~~~~~~ll~~aGf~~~~~~~~  323 (335)
T 2r3s_A          299 DAYTFAEYESMFSNAGFSHSQLHSL  323 (335)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CcCCHHHHHHHHHHCCCCeeeEEEC
Confidence             111224566788899998887654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=95.92  E-value=0.016  Score=51.70  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++..  ...+++.-.+ . .+.+   .++.++...  ..+.+ ...|+.++.    +....
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s-~-~~~~---~a~~~~~~~--~~~~~-~~~d~~~~~----~~~~~  158 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL--YATTDLLEPV-K-HMLE---EAKRELAGM--PVGKF-ILASMETAT----LPPNT  158 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESC-H-HHHH---HHHHHTTTS--SEEEE-EESCGGGCC----CCSSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCC-H-HHHH---HHHHHhccC--CceEE-EEccHHHCC----CCCCC
Confidence            56799999999999999999875  3356665433 2 2222   133332221  22333 344776653    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC--CC-----------cCcccHHHHHH
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT--AP-----------FCKWHIEELAR  183 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g--~P-----------Y~sWnI~~LAa  183 (421)
                      ||.|+.++..--.            ...-+..+++.+..+|+|+|.+.|+-...  .+           ++.-.+.++.+
T Consensus       159 fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  226 (254)
T 1xtp_A          159 YDLIVIQWTAIYL------------TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEEEEESCGGGS------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHH
T ss_pred             eEEEEEcchhhhC------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHH
Confidence            9999998752211            01124678888999999999998876311  11           12235677889


Q ss_pred             hCCcEEEEEeeC
Q 014642          184 KHSLLRLDCVQF  195 (421)
Q Consensus       184 ~aGL~L~~~~~F  195 (421)
                      ++||.+++....
T Consensus       227 ~aGf~~~~~~~~  238 (254)
T 1xtp_A          227 ESGVRVVKEAFQ  238 (254)
T ss_dssp             HHTCCEEEEEEC
T ss_pred             HCCCEEEEeeec
Confidence            999999887654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.85  E-value=0.058  Score=47.53  Aligned_cols=103  Identities=23%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++. + ..++++.-.+  +++.+   .+..++   ...++.+ ...|+..+.    +...
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s--~~~~~---~a~~~~---~~~~~~~-~~~d~~~~~----~~~~  106 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLS--EKMLA---RARAAG---PDTGITY-ERADLDKLH----LPQD  106 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHTS---CSSSEEE-EECCGGGCC----CCTT
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCC--HHHHH---HHHHhc---ccCCceE-EEcChhhcc----CCCC
Confidence            35679999999999999999886 2 2367766554  22221   122221   1123443 345776653    3457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .||.|+.++..--.   ++           ...+++.+..+|+|+|.+.|+.
T Consensus       107 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          107 SFDLAYSSLALHYV---ED-----------VARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             CEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEecccccc---ch-----------HHHHHHHHHHhcCcCcEEEEEe
Confidence            89999998753321   11           3478888999999999999876

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.85  E-value=0.063  Score=47.66  Aligned_cols=135  Identities=14%  Similarity=0.133  Sum_probs=84.3

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD  118 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD  118 (421)
                      .+||=||=|.=.++..|++.   +..++++-++  +...+   .+..++.......-.-+...|++++.     ....||
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD  134 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASP---ERFVVGLDIS--ESALA---KANETYGSSPKAEYFSFVKEDVFTWR-----PTELFD  134 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBT---TEEEEEECSC--HHHHH---HHHHHHTTSGGGGGEEEECCCTTTCC-----CSSCEE
T ss_pred             CCEEEeCCCCCHHHHHHHhC---CCeEEEEECC--HHHHH---HHHHHhhccCCCcceEEEECchhcCC-----CCCCee
Confidence            49999999999999999763   3456655443  22322   13333332111111234456777754     235899


Q ss_pred             EEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC------CCc--CcccHHHHHHhCCcEEE
Q 014642          119 RIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT------APF--CKWHIEELARKHSLLRL  190 (421)
Q Consensus       119 rIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------~PY--~sWnI~~LAa~aGL~L~  190 (421)
                      .|+.+....-. ..+           -...+++.+..+|+|+|.+.+.....      .|+  +.=.+..+.+++||.++
T Consensus       135 ~v~~~~~l~~~-~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  202 (235)
T 3lcc_A          135 LIFDYVFFCAI-EPE-----------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAV  202 (235)
T ss_dssp             EEEEESSTTTS-CGG-----------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEE
T ss_pred             EEEEChhhhcC-CHH-----------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEE
Confidence            99987654432 111           13578889999999999988865432      232  22256678889999999


Q ss_pred             EEeeCCCC
Q 014642          191 DCVQFRKE  198 (421)
Q Consensus       191 ~~~~F~~~  198 (421)
                      +.......
T Consensus       203 ~~~~~~~~  210 (235)
T 3lcc_A          203 SVEENPHA  210 (235)
T ss_dssp             EEEECTTC
T ss_pred             EEEecCCc
Confidence            88776643

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=95.84  E-value=0.11  Score=49.47  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=83.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +++..+||=||=|.=.++..|++.+. ...++  ..|- ..+.+   .+..++....-. ++++ ...|+.+   .  +.
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~--~~D~-~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~---~--~~  246 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGT--LVEL-AGPAE---RARRRFADAGLADRVTV-AEGDFFK---P--LP  246 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEE--EEEC-HHHHH---HHHHHHHHTTCTTTEEE-EECCTTS---C--CS
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEE--EEeC-HHHHH---HHHHHHHhcCCCCceEE-EeCCCCC---c--CC
Confidence            45678999999999999999999873 33454  4565 44443   245554432111 2433 3346543   1  11


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--C---C------------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--T---T------------------  170 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~---g------------------  170 (421)
                       ..||.|+.+...--.   .         ..-...+++.+..+|+|+|.+.|.-.  .   .                  
T Consensus       247 -~~~D~v~~~~vl~~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (374)
T 1qzz_A          247 -VTADVVLLSFVLLNW---S---------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG  313 (374)
T ss_dssp             -CCEEEEEEESCGGGS---C---------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred             -CCCCEEEEeccccCC---C---------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCC
Confidence             239999998754322   1         11124678888999999999887543  1   1                  


Q ss_pred             -CCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          171 -APFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       171 -~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                       ..++.=++.++.+++||..++..+..
T Consensus       314 ~~~~~~~~~~~ll~~aGf~~~~~~~~~  340 (374)
T 1qzz_A          314 GRVRTRDEVVDLAGSAGLALASERTSG  340 (374)
T ss_dssp             CCCCCHHHHHHHHHTTTEEEEEEEEEC
T ss_pred             CcCCCHHHHHHHHHHCCCceEEEEECC
Confidence             11122245667888999998887664

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=95.78  E-value=0.093  Score=50.80  Aligned_cols=148  Identities=8%  Similarity=0.001  Sum_probs=92.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ..+++||=+|=|-=..|+.||+..+....|+|.-.+. +.+    ..+++|++.+.-.++.+ ..-|+.++..... ...
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~-~~l----~~~~~n~~r~g~~~v~~-~~~D~~~~~~~~~-~~~  173 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA-KRL----ASMATLLARAGVSCCEL-AEEDFLAVSPSDP-RYH  173 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH-HHH----HHHHHHHHHTTCCSEEE-EECCGGGSCTTCG-GGT
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH-HHH----HHHHHHHHHcCCCeEEE-EeCChHhcCcccc-ccC
Confidence            4577999998888888899998775455788776652 222    23566665543223444 4558888754311 125


Q ss_pred             cccEEEEcCCCCCCCC--C-ccc-------HHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHh
Q 014642          116 KFDRIIFNFPHAGFHG--K-EED-------DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARK  184 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~G--k-Ed~-------~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~  184 (421)
                      .||+|+.|=|..|..-  + .|.       ...+.....+-...+..|..+|+ +|.+..+-|+-.|- +...|..+.++
T Consensus       174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~  252 (309)
T 2b9e_A          174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ  252 (309)
T ss_dssp             TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred             CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHh
Confidence            7999999999988521  1 010       01223334555678888988887 89988888876654 55677775544


Q ss_pred             C-C-cEEEE
Q 014642          185 H-S-LLRLD  191 (421)
Q Consensus       185 a-G-L~L~~  191 (421)
                      . + +.+..
T Consensus       253 ~~~~~~~~~  261 (309)
T 2b9e_A          253 NPGAFRLAP  261 (309)
T ss_dssp             STTTEEECC
T ss_pred             CCCcEEEec
Confidence            3 5 76653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.76  E-value=0.26  Score=42.86  Aligned_cols=123  Identities=16%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||=|.=.++..|++.. ...+++|.-.+  ++..+   .++.|++...-..+.+ ..-|+.+.-.    ..
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~~~----~~  106 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERN--PQYLG---FIRDNLKKFVARNVTL-VEAFAPEGLD----DL  106 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECC--HHHHH---HHHHHHHHHTCTTEEE-EECCTTTTCT----TS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCC--HHHHH---HHHHHHHHhCCCcEEE-EeCChhhhhh----cC
Confidence            3457899999999999999999885 34567766554  22222   3556665543223333 3445543321    12


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSL  187 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL  187 (421)
                      ..||.|+.+.+.-.                 +..+++.+..+|+++|.+.+......  +.-.+.++.++.|+
T Consensus       107 ~~~D~i~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~  160 (204)
T 3e05_A          107 PDPDRVFIGGSGGM-----------------LEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGY  160 (204)
T ss_dssp             CCCSEEEESCCTTC-----------------HHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCCcC-----------------HHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCC
Confidence            56999999875421                 34788999999999999999754421  23355667778887

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.76  E-value=0.067  Score=44.84  Aligned_cols=130  Identities=11%  Similarity=0.112  Sum_probs=83.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++..  . ++++.-.+  .+..+.   +..+     ..++.++.+ |       ..+..
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s--~~~~~~---a~~~-----~~~v~~~~~-d-------~~~~~   73 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDIN--VIALKE---VKEK-----FDSVITLSD-P-------KEIPD   73 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE--E-EEEEECSC--HHHHHH---HHHH-----CTTSEEESS-G-------GGSCT
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCC--HHHHHH---HHHh-----CCCcEEEeC-C-------CCCCC
Confidence            3456799999999999999999876  2 66665554  222221   2222     224554433 3       23446


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------C----cCcccHHHHHHh
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------P----FCKWHIEELARK  184 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------P----Y~sWnI~~LAa~  184 (421)
                      ..||.|+.+...--.   ++           ...+++.+..+|+++|.+.++-....      |    ++..++..+.+ 
T Consensus        74 ~~~D~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  138 (170)
T 3i9f_A           74 NSVDFILFANSFHDM---DD-----------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-  138 (170)
T ss_dssp             TCEEEEEEESCSTTC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-
T ss_pred             CceEEEEEccchhcc---cC-----------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-
Confidence            789999998765432   11           24788888999999999998854332      1    12234555555 


Q ss_pred             CCcEEEEEeeCCCCCCC
Q 014642          185 HSLLRLDCVQFRKEDYP  201 (421)
Q Consensus       185 aGL~L~~~~~F~~~~YP  201 (421)
                       ||.+++...+.+..|.
T Consensus       139 -Gf~~~~~~~~~~~~~~  154 (170)
T 3i9f_A          139 -NFVVEKRFNPTPYHFG  154 (170)
T ss_dssp             -TEEEEEEECSSTTEEE
T ss_pred             -CcEEEEccCCCCceEE
Confidence             9999998877655443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=95.75  E-value=0.025  Score=49.04  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=79.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=||=|.=.++..|++.++ +.++++.-.+  +...+   .+..|+..+.-.++. +...|+.++.     ....
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~-----~~~~  132 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSL--GKRVR---FLRQVQHELKLENIE-PVQSRVEEFP-----SEPP  132 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESC--HHHHH---HHHHHHHHTTCSSEE-EEECCTTTSC-----CCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCeE-EEecchhhCC-----ccCC
Confidence            467999999999999999998763 4466665443  22322   245555544322333 4556777654     2367


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ||.|+.|.-       ++           +..++..+..+|+|+|.+.+..-.   ...-.+.++.+  |+.+.+..+|.
T Consensus       133 ~D~i~~~~~-------~~-----------~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~--g~~~~~~~~~~  189 (207)
T 1jsx_A          133 FDGVISRAF-------AS-----------LNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPE--EYQVESVVKLQ  189 (207)
T ss_dssp             EEEEECSCS-------SS-----------HHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCT--TEEEEEEEEEE
T ss_pred             cCEEEEecc-------CC-----------HHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhc--CCceeeeeeec
Confidence            999998631       11           347888999999999999987532   22223333333  88888776664

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.73  E-value=0.014  Score=53.11  Aligned_cols=146  Identities=12%  Similarity=0.118  Sum_probs=92.4

Q ss_pred             eeeeccCC-CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642           30 KWIMHYSS-KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE  108 (421)
Q Consensus        30 K~i~~Yss-~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~  108 (421)
                      .|...|.. ..+||=||=|.=.++..||+... ..++++.-..  ....+   .+..|++...-.++ -+...||..+-.
T Consensus        26 d~~~~f~~~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s--~~~l~---~a~~~~~~~~l~nv-~~~~~Da~~~l~   98 (218)
T 3dxy_A           26 DFPALFGREAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVH--SPGVG---ACLASAHEEGLSNL-RVMCHDAVEVLH   98 (218)
T ss_dssp             CHHHHHSSCCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSC--HHHHH---HHHHHHHHTTCSSE-EEECSCHHHHHH
T ss_pred             CHHHHcCCCCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEec--HHHHH---HHHHHHHHhCCCcE-EEEECCHHHHHH
Confidence            34445554 56899999999999999998763 4567776443  22222   24455543322233 345668777421


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642          109 HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL  188 (421)
Q Consensus       109 ~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~  188 (421)
                      . .+....||.|+.|||-.-.+...      ...+.+-..|++.+..+|+|||.++|.... .+|-.|-++.+.+..++.
T Consensus        99 ~-~~~~~~~d~v~~~~~~p~~~~~~------~~rr~~~~~~l~~~~r~LkpGG~l~i~td~-~~~~~~~~~~~~~~~~~~  170 (218)
T 3dxy_A           99 K-MIPDNSLRMVQLFFPDPWHKARH------NKRRIVQVPFAELVKSKLQLGGVFHMATDW-EPYAEHMLEVMSSIDGYK  170 (218)
T ss_dssp             H-HSCTTCEEEEEEESCCCCCSGGG------GGGSSCSHHHHHHHHHHEEEEEEEEEEESC-HHHHHHHHHHHHTSTTEE
T ss_pred             H-HcCCCChheEEEeCCCCccchhh------hhhhhhhHHHHHHHHHHcCCCcEEEEEeCC-HHHHHHHHHHHHhCCCcc
Confidence            1 13467899999998765321111      011122246899999999999999998754 357778777777777765


Q ss_pred             EE
Q 014642          189 RL  190 (421)
Q Consensus       189 L~  190 (421)
                      ..
T Consensus       171 ~~  172 (218)
T 3dxy_A          171 NL  172 (218)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.71  E-value=0.091  Score=47.26  Aligned_cols=136  Identities=16%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||=|.=.++..|++..+ ...|+|.-.+. +.+ +.   ..++.+.  ..++..+. -|++.+.....+. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~-~~l-~~---~~~~a~~--~~~v~~~~-~d~~~~~~~~~~~-  124 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSA-KPF-EK---LLELVRE--RNNIIPLL-FDASKPWKYSGIV-  124 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCH-HHH-HH---HHHHHHH--CSSEEEEC-SCTTCGGGTTTTC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCH-HHH-HH---HHHHHhc--CCCeEEEE-cCCCCchhhcccc-
Confidence            35678999999999999999998876 44677655542 221 10   1111111  13454444 3777753322233 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHH-------HHhCCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEEL-------ARKHSL  187 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~L-------Aa~aGL  187 (421)
                      ..||.|+.|.++.-                -...+++.+..+|+|||.+.++++.+..-..+..+++       .+++ |
T Consensus       125 ~~fD~V~~~~~~~~----------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f  187 (210)
T 1nt2_A          125 EKVDLIYQDIAQKN----------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-F  187 (210)
T ss_dssp             CCEEEEEECCCSTT----------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-S
T ss_pred             cceeEEEEeccChh----------------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-c
Confidence            68999999954321                1235678899999999999999754311122222221       3445 9


Q ss_pred             EEEEEeeCCC
Q 014642          188 LRLDCVQFRK  197 (421)
Q Consensus       188 ~L~~~~~F~~  197 (421)
                      .+.+.....+
T Consensus       188 ~~~~~~~~~p  197 (210)
T 1nt2_A          188 KIVKHGSLMP  197 (210)
T ss_dssp             EEEEEEECTT
T ss_pred             EEeeeecCCC
Confidence            9999887653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.69  E-value=0.035  Score=49.53  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||-||=|.=.++..|++.++ +.+|++.-.+  .+..+   .++.|++.+.-. .+.+ ...|+....... ...
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~-~~~  124 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALP-EATIVSIERD--ERRYE---EAHKHVKALGLESRIEL-LFGDALQLGEKL-ELY  124 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCC--HHHHH---HHHHHHHHTTCTTTEEE-ECSCGGGSHHHH-TTS
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEE-EECCHHHHHHhc-ccC
Confidence            4567999999999999999999874 4567666544  23322   255555433211 2333 344666531110 014


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ..||.|+.+.|...                 ...+++.+..+|+++|.|.++
T Consensus       125 ~~fD~I~~~~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          125 PLFDVLFIDAAKGQ-----------------YRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             CCEEEEEEEGGGSC-----------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCHHH-----------------HHHHHHHHHHHcCCCeEEEEE
Confidence            67999999987431                 357889999999999999886

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.68  E-value=0.0077  Score=58.43  Aligned_cols=109  Identities=18%  Similarity=0.256  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeecccCCc-Ccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL----KKLGASIIHGVDATEM-KEHSE  111 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L----r~~Gv~VlhgVDATkL-~~~~~  111 (421)
                      ...+||.||=|+=.++..|+++.+ ..+|++.-.|.  ++.+   -+++|+..+    ....++++ .-|+.+. ..   
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~i~---~Ar~~~~~~~~~~~~~rv~~~-~~D~~~~l~~---  177 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDE--MVID---VAKKFLPGMSCGFSHPKLDLF-CGDGFEFLKN---  177 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCH--HHHH---HHHHHCTTTSGGGGCTTEEEE-CSCHHHHHHH---
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHHHHhccccCCCCEEEE-EChHHHHHHh---
Confidence            457999999999999999998753 45788777663  2222   234444332    22234443 3466552 21   


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHH-HHHHHhhHhccCCCCeEEEEe
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV-EGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL-~~FF~SA~~lL~~~GeIHVTL  167 (421)
                       ...+||.||.|.|+.-.  .         ...|. ..||+.+..+|+|+|.+.+..
T Consensus       178 -~~~~fD~Ii~d~~~~~~--~---------~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          178 -HKNEFDVIITDSSDPVG--P---------AESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             -CTTCEEEEEECCC------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             -cCCCceEEEEcCCCCCC--c---------chhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence             24689999999875421  1         12344 799999999999999998875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=95.67  E-value=0.028  Score=48.56  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      .+..+..+||=||=|.-.+++.++...  +.++++.-.+  +++.+   .++.++.... ..+.++ ..|+.++.    +
T Consensus        19 ~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s--~~~~~---~a~~~~~~~~-~~~~~~-~~d~~~~~----~   85 (209)
T 2p8j_A           19 NESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEIS--DLQLK---KAENFSRENN-FKLNIS-KGDIRKLP----F   85 (209)
T ss_dssp             HHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECC--HHHHH---HHHHHHHHHT-CCCCEE-ECCTTSCC----S
T ss_pred             hccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECC--HHHHH---HHHHHHHhcC-CceEEE-ECchhhCC----C
Confidence            345567899999999887765555443  3456654433  33333   2444443322 344443 44777653    3


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ....||.|+.+...... .           ..-...+++.+..+|+|+|.+.++..+.
T Consensus        86 ~~~~fD~v~~~~~l~~~-~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHM-R-----------KNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CTTCEEEEEECSCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCceeEEEEcChHHhC-C-----------HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            45789999987542221 0           1224578888999999999999987653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.66  E-value=0.04  Score=48.58  Aligned_cols=111  Identities=16%  Similarity=0.127  Sum_probs=69.6

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...+..+||=||=|.=.++..|++.++.+..|++.-.+.  +..+   .++.|++...-.+-.-+..-|+.+.-....-.
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  129 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASE--KHAD---IARSNIERANLNDRVEVRTGLALDSLQQIENE  129 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCH--HHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCH--HHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence            345678999999999999999999875445676665542  2222   35556554322221234445665432111101


Q ss_pred             -cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          114 -KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       114 -~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                       ...||.|+.+.++..                 ...+|..+..+|+|+|.|.+.
T Consensus       130 ~~~~fD~v~~d~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          130 KYEPFDFIFIDADKQN-----------------NPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             TCCCCSEEEECSCGGG-----------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCcCEEEEcCCcHH-----------------HHHHHHHHHHhcCCCcEEEEe
Confidence             157999999876321                 237888999999999976664

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.64  E-value=0.0092  Score=57.81  Aligned_cols=112  Identities=20%  Similarity=0.334  Sum_probs=72.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeecccCCcCccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL----KKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L----r~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+||.||=|+=.++..|+++.+ ..++++.-.|. + +.+   -+++|+..+    ....++++.+ |+.+.-..   
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~-~-~l~---~ar~~~~~~~~~~~~~~v~~~~~-D~~~~l~~---  185 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE-T-VIE---VSKIYFKNISCGYEDKRVNVFIE-DASKFLEN---  185 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCH-H-HHH---HHHHHCTTTSGGGGSTTEEEEES-CHHHHHHH---
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCH-H-HHH---HHHHHHHhhccccCCCcEEEEEc-cHHHHHhh---
Confidence            457999999999999999998653 45788776663 2 222   244555442    2224555443 66542111   


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHH-HHHHHhhHhccCCCCeEEEEecC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV-EGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL-~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ...+||.||.|.|+.-  +.         ...|. ..||+.+..+|+|+|.+.+....
T Consensus       186 ~~~~fDvIi~d~~~p~--~~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          186 VTNTYDVIIVDSSDPI--GP---------AETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             CCSCEEEEEEECCCSS--SG---------GGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCCceEEEECCcCCC--Cc---------chhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            1467999999986432  11         12233 68999999999999999887643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.57  E-value=0.015  Score=50.01  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=73.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||-||=|+=.++..|++..  ..++++.-.+.  .+.+   .++.++..  ..++.++ ..|+.++.    +...
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~~D~s~--~~~~---~a~~~~~~--~~~i~~~-~~d~~~~~----~~~~  106 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGG--FPNVTSVDYSS--VVVA---AMQACYAH--VPQLRWE-TMDVRKLD----FPSA  106 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTT--CCCEEEEESCH--HHHH---HHHHHTTT--CTTCEEE-ECCTTSCC----SCSS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcC--CCcEEEEeCCH--HHHH---HHHHhccc--CCCcEEE-EcchhcCC----CCCC
Confidence            567899999999989999998763  22677766542  2222   13333322  1245554 45887762    3457


Q ss_pred             cccEEEEcCCCCCCC-CCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          116 KFDRIIFNFPHAGFH-GKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~-GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .||.|+.+.|.-... +..+.-..-..+..-+..+++.+..+|+|+|.+.+.....
T Consensus       107 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          107 SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            899999886631100 0000000001244556789999999999999998876543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.56  E-value=0.0084  Score=56.70  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=71.5

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeecccCCcCccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL----KKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L----r~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      +..+||.||=|+=+.+..|+++. ...++++.-.|..  +.+   -+++++..+    ....++|+. -|+.+.-..   
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~--~i~---~a~~~~~~~~~~~~~~~v~~~~-~D~~~~l~~---  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDET--VIE---VSKIYFKNISCGYEDKRVNVFI-EDASKFLEN---  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHH--HHH---HHHHHCTTTSGGGGSTTEEEEE-SCHHHHHHH---
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHH--HHH---HHHHHhHHhccccCCCcEEEEE-CChHHHHHh---
Confidence            45799999999999999999764 3457887777632  222   133343322    223455544 466653211   


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHH-HHHHHhhHhccCCCCeEEEEe
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV-EGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL-~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ...+||.||.|.+..-.  .         ...|. ..||+.+..+|+|+|.+.+..
T Consensus       148 ~~~~fD~Ii~d~~~~~~--~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIG--P---------AETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CCSCEEEEEEECCCTTT--G---------GGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCceEEEEcCCCCCC--c---------chhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            14689999998765421  1         12233 689999999999999998774

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.55  E-value=0.071  Score=48.14  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++..   .++++.-++  +++.+   .++.++.     ++.++ ..|+.++..     ..
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s--~~~~~---~a~~~~~-----~~~~~-~~d~~~~~~-----~~  109 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF---GTVEGLELS--ADMLA---IARRRNP-----DAVLH-HGDMRDFSL-----GR  109 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESC--HHHHH---HHHHHCT-----TSEEE-ECCTTTCCC-----SC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECC--HHHHH---HHHhhCC-----CCEEE-ECChHHCCc-----cC
Confidence            345799999999999999998873   356665443  22222   1222221     55554 457777643     57


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .||.|+.++.-+...          .+.+-+..+++.+..+|+|+|.+.|+
T Consensus       110 ~fD~v~~~~~~l~~~----------~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          110 RFSAVTCMFSSIGHL----------AGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CEEEEEECTTGGGGS----------CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcCEEEEcCchhhhc----------CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            899999876322210          02234568899999999999999986

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.54  E-value=0.015  Score=55.88  Aligned_cols=111  Identities=16%  Similarity=0.266  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeecccCCc-Cccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK-----KLGASIIHGVDATEM-KEHS  110 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-----~~Gv~VlhgVDATkL-~~~~  110 (421)
                      ...+||.||=|+=.+++.|+++.+ ..+|++.-.|.  ++.+   -+++++..+.     ...++++. -|+.+. ..  
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~i~---~ar~~~~~~~~~~~~~~~v~~~~-~D~~~~l~~--  147 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDG--ELVE---VAKRHMPEWHQGAFDDPRAVLVI-DDARAYLER--  147 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCH--HHHH---HHHHHCHHHHTTGGGCTTEEEEE-SCHHHHHHH--
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccccCCceEEEE-chHHHHHHh--
Confidence            457999999999999999998753 45777777663  2222   2445555532     23455544 477653 21  


Q ss_pred             ccccCcccEEEEcCCCCCCC-CCcccHHHHHHhHHH-HHHHHHhhHhccCCCCeEEEEe
Q 014642          111 ELSKRKFDRIIFNFPHAGFH-GKEEDDEVIRMHMSL-VEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~-GkEd~~~~I~~nr~L-L~~FF~SA~~lL~~~GeIHVTL  167 (421)
                        ...+||.||.|.|+.... +.         ...| ...||+.+..+|+|+|.+.+..
T Consensus       148 --~~~~fD~Ii~d~~~~~~~~~~---------~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 --TEERYDVVIIDLTDPVGEDNP---------ARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             --CCCCEEEEEEECCCCBSTTCG---------GGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCccEEEECCCCcccccCc---------chhccHHHHHHHHHHhcCCCcEEEEEc
Confidence              246799999998863200 10         1112 4689999999999999988864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=95.54  E-value=0.19  Score=48.35  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ...+.+||=+|=|.=.++..+|...+....|++.-.|.  .+.+   .|+.|++...-..+ -+..-|+.++...    .
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~--~~i~---~a~~n~~~~g~~~i-~~~~~D~~~~~~~----~  270 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDE--KRLG---LAREAALASGLSWI-RFLRADARHLPRF----F  270 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCH--HHHH---HHHHHHHHTTCTTC-EEEECCGGGGGGT----C
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCH--HHHH---HHHHHHHHcCCCce-EEEeCChhhCccc----c
Confidence            45677899888888888888887764456787765553  2222   35666554321123 3445688876432    2


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ..||.||.|-|.--..+.      ......|...+++.+.++|+++|.+.+...+.     ..+.++.+ .|+...++..
T Consensus       271 ~~~D~Ii~npPyg~r~~~------~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-----~~~~~~~~-~g~~~~~~~~  338 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGR------KEGLFHLYWDFLRGALALLPPGGRVALLTLRP-----ALLKRALP-PGFALRHARV  338 (354)
T ss_dssp             CCCSEEEECCCSCC----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-----HHHHHHCC-TTEEEEEEEE
T ss_pred             CCCCEEEECCCCcCccCC------cccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-----HHHHHHhh-cCcEEEEEEE
Confidence            458999999996432111      12345677889999999999999999875532     12344555 8888887765


Q ss_pred             C
Q 014642          195 F  195 (421)
Q Consensus       195 F  195 (421)
                      +
T Consensus       339 l  339 (354)
T 3tma_A          339 V  339 (354)
T ss_dssp             C
T ss_pred             E
Confidence            5

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=95.50  E-value=0.028  Score=46.69  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=+|=|.=.++..|++..   .++++.-.+  +++.+   .++.|+....- .+.++ .-|+.+......-...+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~--~~~~~---~a~~~~~~~~~-~~~~~-~~d~~~~~~~~~~~~~~  110 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKD--PEAVR---LLKENVRRTGL-GARVV-ALPVEVFLPEAKAQGER  110 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCC--HHHHH---HHHHHHHHHTC-CCEEE-CSCHHHHHHHHHHTTCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCC--HHHHH---HHHHHHHHcCC-ceEEE-eccHHHHHHhhhccCCc
Confidence            67899999999999999998863   235555443  33333   35556655432 45443 44666532111111347


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ||.|+.|.|..+  .          ..+++..+.+  ..+|+|+|.+.++.....
T Consensus       111 ~D~i~~~~~~~~--~----------~~~~~~~~~~--~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          111 FTVAFMAPPYAM--D----------LAALFGELLA--SGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             EEEEEECCCTTS--C----------TTHHHHHHHH--HTCEEEEEEEEEEEETTS
T ss_pred             eEEEEECCCCch--h----------HHHHHHHHHh--hcccCCCcEEEEEeCCcc
Confidence            999999988652  1          1123333333  589999999999887654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.48  E-value=0.039  Score=46.99  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++.   +.++++.-.+  +...+   .+..++....-.++.+ ...|+.++.    + ..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~d~~~~~----~-~~   96 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKN--AMSIA---NVERIKSIENLDNLHT-RVVDLNNLT----F-DR   96 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHHTCTTEEE-EECCGGGCC----C-CC
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHHHHhCCCCCcEE-EEcchhhCC----C-CC
Confidence            35679999999999999999986   3467666554  22222   2344443322123333 445777653    2 57


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .||.|+.+.+.--. ..+           -+..+++.+..+|+|+|.+.|.
T Consensus        97 ~~D~v~~~~~l~~~-~~~-----------~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A           97 QYDFILSTVVLMFL-EAK-----------TIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             CEEEEEEESCGGGS-CGG-----------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceEEEEcchhhhC-CHH-----------HHHHHHHHHHHhcCCCeEEEEE
Confidence            89999999653321 111           1356888899999999996654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.41  E-value=0.011  Score=55.82  Aligned_cols=107  Identities=21%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----------HhCCCEEEeecccCC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-----------KKLGASIIHGVDATE  105 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-----------r~~Gv~VlhgVDATk  105 (421)
                      ...+||.||=|+=.++..|+++ + ..+|++.-.|..  +.+   -+++|+ .+           ....++|+. -||.+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~--~i~---~ar~~~-~~~~~l~~~~~~~~~~~v~~~~-~D~~~  145 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDED--VIM---VSKDLI-KIDNGLLEAMLNGKHEKAKLTI-GDGFE  145 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHH--HHH---HHHHHT-CTTTTHHHHHHTTCCSSEEEEE-SCHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHH--HHH---HHHHHH-hhccccccccccCCCCcEEEEE-CchHH
Confidence            4579999999999999999987 4 557887777632  222   133444 22           122355554 36654


Q ss_pred             cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHH-HHHHHHhhHhccCCCCeEEEEe
Q 014642          106 MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSL-VEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       106 L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~L-L~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .-.   . ..+||.||.|.|...  +.         ...| ...||+.+..+|+|+|.+.+..
T Consensus       146 ~l~---~-~~~fD~Ii~d~~~~~--~~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          146 FIK---N-NRGFDVIIADSTDPV--GP---------AKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HHH---H-CCCEEEEEEECCCCC----------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Hhc---c-cCCeeEEEECCCCCC--Cc---------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            211   1 467999999998532  11         1112 3689999999999999988874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.40  E-value=0.049  Score=50.21  Aligned_cols=123  Identities=15%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk  113 (421)
                      .+..+||=+|=|.=.++.++++. + + +++|.-.+... +    ..++.|+.   ..|  +.+.. -|+.+.     +.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~-g-~-~v~gvDi~~~~-v----~~a~~n~~---~~~~~v~~~~-~d~~~~-----~~  181 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKL-G-G-KALGVDIDPMV-L----PQAEANAK---RNGVRPRFLE-GSLEAA-----LP  181 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-C-EEEEEESCGGG-H----HHHHHHHH---HTTCCCEEEE-SCHHHH-----GG
T ss_pred             CCCCEEEEecCCCcHHHHHHHHh-C-C-eEEEEECCHHH-H----HHHHHHHH---HcCCcEEEEE-CChhhc-----Cc
Confidence            45789999999999999988875 3 3 78887776422 1    12444543   334  33332 244331     23


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...||.|+.|.+.-                 .+..++..+..+|+|+|.+.++-...  ...-.+.++.+++||.+.+..
T Consensus       182 ~~~fD~Vv~n~~~~-----------------~~~~~l~~~~~~LkpgG~lils~~~~--~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          182 FGPFDLLVANLYAE-----------------LHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             GCCEEEEEEECCHH-----------------HHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEECCcHH-----------------HHHHHHHHHHHHcCCCCEEEEEeecc--CCHHHHHHHHHHCCCEEEEEe
Confidence            46899999997531                 24678888999999999998864322  234467778888999998764


Q ss_pred             e
Q 014642          194 Q  194 (421)
Q Consensus       194 ~  194 (421)
                      .
T Consensus       243 ~  243 (254)
T 2nxc_A          243 A  243 (254)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.39  E-value=0.017  Score=51.03  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhC----CCCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeecccCC
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFG----SASNICASSLDSYETVVKKFKEARSNLDTLK-----KLGASIIHGVDATE  105 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~g----s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-----~~Gv~VlhgVDATk  105 (421)
                      ..+..+||-||=|.=.++..|++..+    ...++++.-.+  +++.+   .++.|+..+.     ...+.+ ...|+.+
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~~~v~~-~~~d~~~  151 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERV--KDLVN---FSLENIKRDKPELLKIDNFKI-IHKNIYQ  151 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESC--HHHHH---HHHHHHHHHCGGGGSSTTEEE-EECCGGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCC--HHHHH---HHHHHHHHcCccccccCCEEE-EECChHh
Confidence            45678999999999999999998875    34467776554  33332   3556666543     223444 4457766


Q ss_pred             cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          106 MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       106 L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ...........||.|+.+.+.-.                    ++..+..+|+++|.+.++.-.+
T Consensus       152 ~~~~~~~~~~~fD~I~~~~~~~~--------------------~~~~~~~~LkpgG~lv~~~~~~  196 (227)
T 2pbf_A          152 VNEEEKKELGLFDAIHVGASASE--------------------LPEILVDLLAENGKLIIPIEED  196 (227)
T ss_dssp             CCHHHHHHHCCEEEEEECSBBSS--------------------CCHHHHHHEEEEEEEEEEEEET
T ss_pred             cccccCccCCCcCEEEECCchHH--------------------HHHHHHHhcCCCcEEEEEEccC
Confidence            42100023467999998876432                    2356678999999999998764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=95.37  E-value=0.02  Score=53.62  Aligned_cols=126  Identities=17%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...++.+||=+|=|.=+||+.||+..+ +..++|.-.+  .+..+   .++.|++...-.++. +..-|+.++ ..    
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s--~~av~---~a~~n~~~n~l~~~~-~~~~d~~~~-~~----  183 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKN--PTAYH---YLCENIKLNKLNNVI-PILADNRDV-EL----  183 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECC--HHHHH---HHHHHHHHTTCSSEE-EEESCGGGC-CC----
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCEE-EEECChHHc-Cc----
Confidence            356678999999999999999998864 4467665443  33322   356666543222344 666788877 22    


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC--cC-ccc-HHHHHHhCCcEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP--FC-KWH-IEELARKHSLLR  189 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P--Y~-sWn-I~~LAa~aGL~L  189 (421)
                      ...||.||.|.|. +                 +..++..+..+|+|+|.|+++-.....  .. ... +..+++..+..+
T Consensus       184 ~~~~D~Vi~d~p~-~-----------------~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (272)
T 3a27_A          184 KDVADRVIMGYVH-K-----------------THKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL  245 (272)
T ss_dssp             TTCEEEEEECCCS-S-----------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred             cCCceEEEECCcc-c-----------------HHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence            4679999999996 2                 124677788899999999988665421  11 122 344555556544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=95.37  E-value=0.31  Score=46.61  Aligned_cols=135  Identities=13%  Similarity=0.069  Sum_probs=83.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk  113 (421)
                      +++..+||=||=|.=.++..|++.+. ..+++  ..|- ..+.+   .+..++....-.+ +++ ..-|+.++.    +.
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~--~~D~-~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~----~~  255 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDST--ILNL-PGAID---LVNENAAEKGVADRMRG-IAVDIYKES----YP  255 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEE--EEEC-GGGHH---HHHHHHHHTTCTTTEEE-EECCTTTSC----CC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEE--EEec-HHHHH---HHHHHHHhcCCCCCEEE-EeCccccCC----CC
Confidence            45678999999999999999999873 33454  4565 44433   2444544321112 333 345776652    22


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe-cC--------------------CCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH-KT--------------------TAP  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL-k~--------------------g~P  172 (421)
                        .+|.|+.++..-..            ..+-...+++.+..+|+|+|.+.|.- ..                    +..
T Consensus       256 --~~D~v~~~~vlh~~------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (359)
T 1x19_A          256 --EADAVLFCRILYSA------------NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS  321 (359)
T ss_dssp             --CCSEEEEESCGGGS------------CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCC
T ss_pred             --CCCEEEEechhccC------------CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCc
Confidence              23999997654332            01234678899999999999986653 11                    111


Q ss_pred             ----cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 ----FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 ----Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                          ++.=++.++.+++||..++..+.
T Consensus       322 ~~~~~t~~e~~~ll~~aGf~~v~~~~~  348 (359)
T 1x19_A          322 VLGFKEQARYKEILESLGYKDVTMVRK  348 (359)
T ss_dssp             CCCCCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred             ccCCCCHHHHHHHHHHCCCceEEEEec
Confidence                23335667777888888777654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.35  E-value=0.087  Score=48.18  Aligned_cols=109  Identities=16%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+..+||=||=|.=.+++.||+.++.+..|++.-.+  ++..+   .++.|++.+.-. .+. +..-|+.+.-... -
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~---~a~~~~~~~g~~~~v~-~~~~d~~~~l~~~-~  132 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEAD--AHHAQ---VARENLQLAGVDQRVT-LREGPALQSLESL-G  132 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECC--HHHHH---HHHHHHHHTTCTTTEE-EEESCHHHHHHTC-C
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEE-EEEcCHHHHHHhc-C
Confidence            34567899999999999999999988645567665554  22222   355555543222 233 3445776532111 1


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ....||.|+.+.+...                 ...||..+..+|+|+|.|.+.
T Consensus       133 ~~~~fD~V~~d~~~~~-----------------~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          133 ECPAFDLIFIDADKPN-----------------NPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             SCCCCSEEEECSCGGG-----------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CCCCeEEEEECCchHH-----------------HHHHHHHHHHhcCCCeEEEEe
Confidence            1358999999765221                 135889999999999988775

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.34  E-value=0.21  Score=48.42  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++++. ...+  |.+|- ..+.+   .++.++....-.+-.-+..-|...  .   +..
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~--~~~D~-~~~~~---~a~~~~~~~~l~~~v~~~~~d~~~--~---~p~  267 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFP-GLRG--TLLER-PPVAE---EARELLTGRGLADRCEILPGDFFE--T---IPD  267 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEE--EEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTTT--C---CCS
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCC-CCeE--EEEcC-HHHHH---HHHHhhhhcCcCCceEEeccCCCC--C---CCC
Confidence            45678999999999999999999863 3344  55666 44443   244444332111112233445541  1   122


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC---------------------CCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT---------------------APF  173 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---------------------~PY  173 (421)
                       .||.|+.+.-.--+   .         ..-...+++.+..+|+|+|.+.|.-...                     ..+
T Consensus       268 -~~D~v~~~~vlh~~---~---------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~  334 (369)
T 3gwz_A          268 -GADVYLIKHVLHDW---D---------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAER  334 (369)
T ss_dssp             -SCSEEEEESCGGGS---C---------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCB
T ss_pred             -CceEEEhhhhhccC---C---------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccC
Confidence             79999987654332   1         1112467888899999999988753211                     112


Q ss_pred             CcccHHHHHHhCCcEEEEEeeC
Q 014642          174 CKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       174 ~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      +.=++.++.+++||.+++..+.
T Consensus       335 t~~e~~~ll~~aGf~~~~~~~~  356 (369)
T 3gwz_A          335 SESEFAALLEKSGLRVERSLPC  356 (369)
T ss_dssp             CHHHHHHHHHTTTEEEEEEEEC
T ss_pred             CHHHHHHHHHHCCCeEEEEEEC
Confidence            2224567888899999988663

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.30  E-value=0.029  Score=49.37  Aligned_cols=110  Identities=11%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~L  112 (421)
                      ...+..+||=||=|.=.++..|++.++.+..|++.-.+.  +..+   .++.|++...-.+ +.+ ..-|+.+.-....-
T Consensus        61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~  134 (225)
T 3tr6_A           61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDE--KSTA---LAKEYWEKAGLSDKIGL-RLSPAKDTLAELIH  134 (225)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCH--HHHH---HHHHHHHHTTCTTTEEE-EESCHHHHHHHHHT
T ss_pred             HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCH--HHHH---HHHHHHHHCCCCCceEE-EeCCHHHHHHHhhh
Confidence            344677999999999999999999875455676665542  2222   3455554432222 333 33466443211100


Q ss_pred             c--cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 S--KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 k--~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .  ...||.|+.+.|...                 ...+|+.+..+|+|+|.|.+.
T Consensus       135 ~~~~~~fD~v~~~~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          135 AGQAWQYDLIYIDADKAN-----------------TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TTCTTCEEEEEECSCGGG-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCccEEEECCCHHH-----------------HHHHHHHHHHhcCCCcEEEEe
Confidence            1  168999998876221                 235888899999999998874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=95.30  E-value=0.12  Score=45.42  Aligned_cols=100  Identities=21%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++...   ++++.-.+  .++.+.   ++.++     .++.++ ..|+.++.    + ..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s--~~~~~~---a~~~~-----~~~~~~-~~d~~~~~----~-~~   99 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELS--EDMLTH---ARKRL-----PDATLH-QGDMRDFR----L-GR   99 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESC--HHHHHH---HHHHC-----TTCEEE-ECCTTTCC----C-SS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCC--HHHHHH---HHHhC-----CCCEEE-ECCHHHcc----c-CC
Confidence            4567999999999999999998753   56664332  223221   22221     245544 45777653    2 46


Q ss_pred             cccEEEE---cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIF---NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIF---NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .||.|+.   .+.|+..             ..-+..+++.+..+|+|+|.+.++.
T Consensus       100 ~~D~v~~~~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          100 KFSAVVSMFSSVGYLKT-------------TEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CEEEEEECTTGGGGCCS-------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEEcCchHhhcCC-------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            8999994   2334421             1234678899999999999998874

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.29  E-value=0.18  Score=44.76  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||-+|=|.=.++..|++.   +.++++.-.+. + ..+   .++.|+....-..-.....-|+.+..    +...
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~-~-~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~  157 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVE-E-FYK---TAQKNLKKFNLGKNVKFFNVDFKDAE----VPEG  157 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCH-H-HHH---HHHHHHHHTTCCTTEEEECSCTTTSC----CCTT
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCH-H-HHH---HHHHHHHHcCCCCcEEEEEcChhhcc----cCCC
Confidence            46789999999999999999987   44677765542 2 222   24555543311011223344555431    1346


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.|.|..                   ..+++.+..+|+++|.+.+....
T Consensus       158 ~~D~v~~~~~~~-------------------~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFVDVREP-------------------WHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEECSSCG-------------------GGGHHHHHHHBCTTCEEEEEESS
T ss_pred             cccEEEECCcCH-------------------HHHHHHHHHHcCCCCEEEEEeCC
Confidence            799999987632                   24577888999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.27  E-value=0.063  Score=48.91  Aligned_cols=145  Identities=12%  Similarity=0.078  Sum_probs=88.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC--EEEeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA--SIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv--~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++.+||=||=|.=.++..||+.. .+.++++.-..... +.+.=..+..+   +++.|.  ..+..-|+..+....   .
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~-ml~~A~~A~~~---~~~~~~~~v~~~~~d~~~l~~~~---~   95 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKEN-LFDISKKIIKK---PSKGGLSNVVFVIAAAESLPFEL---K   95 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGG-GHHHHHHHTSC---GGGTCCSSEEEECCBTTBCCGGG---T
T ss_pred             CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHH-HHHHHHHHHHH---HHHcCCCCeEEEEcCHHHhhhhc---c
Confidence            45689999999999999999764 34456665554333 22210011222   223332  345667888884321   2


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE--EecCC----------CC--cCcc----
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV--SHKTT----------AP--FCKW----  176 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV--TLk~g----------~P--Y~sW----  176 (421)
                      ..+|.|..|||..-         .....+.-...+|+.+..+|+|+|.+.|  +..+.          .|  ...|    
T Consensus        96 d~v~~i~~~~~~~~---------~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (225)
T 3p2e_A           96 NIADSISILFPWGT---------LLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSE  166 (225)
T ss_dssp             TCEEEEEEESCCHH---------HHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSH
T ss_pred             CeEEEEEEeCCCcH---------HhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchH
Confidence            67999999998321         0111111124688899999999999998  22221          11  2234    


Q ss_pred             cHHHHHHhCCcEEEEEeeCCCC
Q 014642          177 HIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       177 nI~~LAa~aGL~L~~~~~F~~~  198 (421)
                      ++..+.+++||.+.+...|+..
T Consensus       167 el~~~l~~aGf~v~~~~~~~~~  188 (225)
T 3p2e_A          167 QYKAELSNSGFRIDDVKELDNE  188 (225)
T ss_dssp             HHHHHHHHHTCEEEEEEEECHH
T ss_pred             HHHHHHHHcCCCeeeeeecCHH
Confidence            3777888999999999988854

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.26  E-value=0.34  Score=45.70  Aligned_cols=135  Identities=13%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      +...+||=||=|.=.++..|++.+. .  +..|.+|- ..+.+   .+..++....- ..++ ...-|+.  ..   +. 
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~-~~~~d~~--~~---~p-  233 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHE-D--LSGTVLDL-QGPAS---AAHRRFLDTGLSGRAQ-VVVGSFF--DP---LP-  233 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-HHHHH---HHHHHHHHTTCTTTEE-EEECCTT--SC---CC-
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCC-C--CeEEEecC-HHHHH---HHHHhhhhcCcCcCeE-EecCCCC--CC---CC-
Confidence            4567999999999999999999874 3  33455577 44443   24444433211 1132 2334553  11   11 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC---CC----------------cCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT---AP----------------FCK  175 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---~P----------------Y~s  175 (421)
                      ..||.|+.+.-.--+   .         ..-...+++.+..+|+|+|.+.|.-...   .|                ++.
T Consensus       234 ~~~D~v~~~~vlh~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~  301 (332)
T 3i53_A          234 AGAGGYVLSAVLHDW---D---------DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSL  301 (332)
T ss_dssp             CSCSEEEEESCGGGS---C---------HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCH
T ss_pred             CCCcEEEEehhhccC---C---------HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCH
Confidence            279999987643322   1         1113467888889999999998864321   11                222


Q ss_pred             ccHHHHHHhCCcEEEEEeeCC
Q 014642          176 WHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       176 WnI~~LAa~aGL~L~~~~~F~  196 (421)
                      =++.++.+++||..++..+..
T Consensus       302 ~e~~~ll~~aGf~~~~~~~~~  322 (332)
T 3i53_A          302 AELGELAAQAGLAVRAAHPIS  322 (332)
T ss_dssp             HHHHHHHHHTTEEEEEEEECS
T ss_pred             HHHHHHHHHCCCEEEEEEECC
Confidence            246678889999999887654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.22  E-value=0.026  Score=54.25  Aligned_cols=110  Identities=18%  Similarity=0.280  Sum_probs=69.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeecccCC-cCcccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL----KKLGASIIHGVDATE-MKEHSE  111 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L----r~~Gv~VlhgVDATk-L~~~~~  111 (421)
                      ...+||.||=|+=.+++.|+++. ...+|++.-.|.  ++.+   -+++|+..+    ....++++.+ ||.+ |..   
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~--~~i~---~ar~~~~~~~~~~~~~rv~v~~~-Da~~~l~~---  164 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDE--DVIQ---VSKKFLPGMAIGYSSSKLTLHVG-DGFEFMKQ---  164 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHHHT---
T ss_pred             CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCH--HHHH---HHHHHhHHhhcccCCCcEEEEEC-cHHHHHhh---
Confidence            45799999999999999999874 245677766653  2222   244555543    2334565543 6654 221   


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                       ...+||.||.|.|..-.  ..        .......||+.+..+|+|+|.+.+..
T Consensus       165 -~~~~fD~Ii~d~~~~~~--~~--------~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          165 -NQDAFDVIITDSSDPMG--PA--------ESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             -CSSCEEEEEEECC---------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCCceEEEECCCCCCC--cc--------hhhhHHHHHHHHHhccCCCeEEEEec
Confidence             24679999999885421  10        11123589999999999999988865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.21  E-value=0.026  Score=53.23  Aligned_cols=110  Identities=15%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH----hCCCEEEeecccCC-cCcccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK----KLGASIIHGVDATE-MKEHSE  111 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr----~~Gv~VlhgVDATk-L~~~~~  111 (421)
                      ...+||.||=|+=..+..|+++.+ ...|++--.|.  ++.+   -+++|+..+.    .-.++|+.+ ||.+ |..   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~--~~v~---~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~---  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDG--KVIE---YSKKFLPSIAGKLDDPRVDVQVD-DGFMHIAK---  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCH--HHHH---HHHHHCHHHHTTTTSTTEEEEES-CSHHHHHT---
T ss_pred             CCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh---
Confidence            457999999999999999998753 45777776663  2222   2455665542    234666555 7665 222   


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                       ...+||.||.|-|....  ...        ......||+.+..+|+|+|.+.+..
T Consensus       145 -~~~~fD~Ii~d~~~~~~--~~~--------~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          145 -SENQYDVIMVDSTEPVG--PAV--------NLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             -CCSCEEEEEESCSSCCS--CCC--------CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             -CCCCeeEEEECCCCCCC--cch--------hhhHHHHHHHHHHhcCCCcEEEEEc
Confidence             14689999999887321  110        0012479999999999999998875

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.19  E-value=0.2  Score=41.72  Aligned_cols=121  Identities=11%  Similarity=0.061  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++   .+.+++++-.+.  .+.+   .+..|++...-..+.+ ...|+.+     .+...
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~--~~~~---~a~~~~~~~~~~~~~~-~~~d~~~-----~~~~~   99 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLD--GAIE---VTKQNLAKFNIKNCQI-IKGRAED-----VLDKL   99 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSH--HHHH---HHHHHHHHTTCCSEEE-EESCHHH-----HGGGC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCH--HHHH---HHHHHHHHcCCCcEEE-EECCccc-----cccCC
Confidence            4567999999999999999998   345777765552  2222   2444544322112333 3445544     23346


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      .||.|+.+.|  .     +           +..+++.+..+  ++|.+.++...  +.....+.++.++.|+.+...
T Consensus       100 ~~D~i~~~~~--~-----~-----------~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A          100 EFNKAFIGGT--K-----N-----------IEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             CCSEEEECSC--S-----C-----------HHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECCc--c-----c-----------HHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcCCeEEEE
Confidence            8999999999  1     1           23566666767  99999998754  335566788888888776654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.18  E-value=0.17  Score=48.21  Aligned_cols=136  Identities=21%  Similarity=0.268  Sum_probs=82.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +++..+||=||=|.=.++..|++.+. .  +.++..|- ..+.+   .+..|+....-. .++++ .-|+.+   .  +.
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~--~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~---~--~~  247 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAP-H--VSATVLEM-AGTVD---TARSYLKDEGLSDRVDVV-EGDFFE---P--LP  247 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-TTHHH---HHHHHHHHTTCTTTEEEE-ECCTTS---C--CS
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCC-C--CEEEEecC-HHHHH---HHHHHHHhcCCCCceEEE-eCCCCC---C--CC
Confidence            45678999999999999999998863 3  34445554 33332   244554432211 34443 346643   1  11


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC----C-C-C---------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT----T-A-P---------------  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~----g-~-P---------------  172 (421)
                       ..||.|+.++..--.   .         ..-...+++.+..+|+|+|.+.|.-..    . . +               
T Consensus       248 -~~~D~v~~~~vl~~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (360)
T 1tw3_A          248 -RKADAIILSFVLLNW---P---------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG  314 (360)
T ss_dssp             -SCEEEEEEESCGGGS---C---------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC
T ss_pred             -CCccEEEEcccccCC---C---------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCC
Confidence             239999987753322   0         111246788888999999998876433    1 1 1               


Q ss_pred             --cCcccHHHHHHhCCcEEEEEeeCC
Q 014642          173 --FCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       173 --Y~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                        ++.=++.++.+++||.+++..+..
T Consensus       315 ~~~t~~e~~~ll~~aGf~~~~~~~~~  340 (360)
T 1tw3_A          315 ALRTREKWDGLAASAGLVVEEVRQLP  340 (360)
T ss_dssp             CCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEEeCC
Confidence              112245567888999988887654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=95.15  E-value=0.088  Score=45.35  Aligned_cols=126  Identities=11%  Similarity=0.031  Sum_probs=80.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc----
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGS-ASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH----  109 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~----  109 (421)
                      ..+..+||=||=|.=.++..|++.++. ...|+|.-+....                ...++.++. -|++++...    
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------------~~~~v~~~~-~d~~~~~~~~~~~   82 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------------PIPNVYFIQ-GEIGKDNMNNIKN   82 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------------CCTTCEEEE-CCTTTTSSCCC--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------------CCCCceEEE-ccccchhhhhhcc
Confidence            345679999999999999999998753 4578887665521                012566554 377665410    


Q ss_pred             -----------------cccccCcccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          110 -----------------SELSKRKFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       110 -----------------~~Lk~~~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                                       ..+....||.|+.|.+ |..  |..  .........+....++.+..+|+|+|.+.++...+.
T Consensus        83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~--g~~--~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (201)
T 2plw_A           83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI--GNK--IDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS  158 (201)
T ss_dssp             ---------CHHHHHHHHHHTTCCEEEEEECCCCCCC--SCH--HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC--CCc--ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence                             0034468999999974 432  111  112223345677889999999999999999776643


Q ss_pred             CcCcccHHHHHH
Q 014642          172 PFCKWHIEELAR  183 (421)
Q Consensus       172 PY~sWnI~~LAa  183 (421)
                        +.+.+....+
T Consensus       159 --~~~~l~~~l~  168 (201)
T 2plw_A          159 --QTNNLKTYLK  168 (201)
T ss_dssp             --THHHHHHHHH
T ss_pred             --CHHHHHHHHH
Confidence              3344444433

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=95.11  E-value=0.21  Score=46.10  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=71.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEE-eecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASII-HGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vl-hgVDATkL~~~~~L  112 (421)
                      ...+..+||=||=|.=.++..|++.++.+.+++++-++. ..+ +   .+..++   +..+..|- ..-|+.++..    
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~-~~~-~---~a~~~~---~~~~~~v~~~~~d~~~~~~----   86 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE-TLL-A---EARELF---RLLPYDSEFLEGDATEIEL----   86 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCH-HHH-H---HHHHHH---HSSSSEEEEEESCTTTCCC----
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH-HHH-H---HHHHHH---HhcCCceEEEEcchhhcCc----
Confidence            345678999999999999999999886556787775542 222 1   133332   33443333 3346666432    


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                       ...||.|+.+...--.   .+           ...+++.+..+|+|+|.+.+.-.+
T Consensus        87 -~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 -NDKYDIAICHAFLLHM---TT-----------PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             -SSCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CCCeeEEEECChhhcC---CC-----------HHHHHHHHHHHcCCCCEEEEEecc
Confidence             3589999998753321   11           137788888999999999877654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.11  E-value=0.096  Score=46.27  Aligned_cols=113  Identities=19%  Similarity=0.246  Sum_probs=66.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh--CCCEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK--LGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~--~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .++.+||=+|=|.=.+++.++...  ...|+|.-.+  +++.+   .++.|++...-  ..+. +..-|+.++...  +.
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s--~~~l~---~a~~~~~~~~~~~~~v~-~~~~d~~~~~~~--~~  121 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELD--KTVAN---QLKKNLQTLKCSSEQAE-VINQSSLDFLKQ--PQ  121 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSC--HHHHH---HHHHHHHHTTCCTTTEE-EECSCHHHHTTS--CC
T ss_pred             cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECC--HHHHH---HHHHHHHHhCCCccceE-EEECCHHHHHHh--hc
Confidence            356799999888888888766542  3456665444  33333   35566654321  1333 344476654321  22


Q ss_pred             cCc-ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          114 KRK-FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       114 ~~~-FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ... ||.|+.|.|.. .   .+       ...++..+.+  ..+|+|+|.+.++.....
T Consensus       122 ~~~~fD~I~~~~~~~-~---~~-------~~~~l~~~~~--~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          122 NQPHFDVVFLDPPFH-F---NL-------AEQAISLLCE--NNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SSCCEEEEEECCCSS-S---CH-------HHHHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred             cCCCCCEEEECCCCC-C---cc-------HHHHHHHHHh--cCccCCCcEEEEEECCCC
Confidence            467 99999999932 1   11       1223333322  568999999999887654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.04  E-value=0.066  Score=47.80  Aligned_cols=106  Identities=17%  Similarity=0.264  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +++.+   .++.++... ...+.++ ..|+.++..     ...
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s--~~~l~---~a~~~~~~~-~~~v~~~-~~d~~~~~~-----~~~  105 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLH--EEMLR---VARRKAKER-NLKIEFL-QGDVLEIAF-----KNE  105 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHT-TCCCEEE-ESCGGGCCC-----CSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHHHHhc-CCceEEE-ECChhhccc-----CCC
Confidence            4579999999999999999886   3356555443  23332   244444322 1234443 447777542     257


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ||.|+.++......           +..-+..+++.+..+|+|+|.+.++..
T Consensus       106 fD~v~~~~~~~~~~-----------~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          106 FDAVTMFFSTIMYF-----------DEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             EEEEEECSSGGGGS-----------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEcCCchhcC-----------CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            99999765433211           123356888999999999999988764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=94.93  E-value=0.07  Score=47.22  Aligned_cols=111  Identities=16%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=+|=|.=.+++.|+...  ...|+|.-.+  +++.+   .++.|++...-..++++ .-|+.++..   .....
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s--~~~l~---~a~~~~~~~~~~~v~~~-~~D~~~~~~---~~~~~  122 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMD--RAVSQ---QLIKNLATLKAGNARVV-NSNAMSFLA---QKGTP  122 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSC--HHHHH---HHHHHHHHTTCCSEEEE-CSCHHHHHS---SCCCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECC--HHHHH---HHHHHHHHcCCCcEEEE-ECCHHHHHh---hcCCC
Confidence            56799999888888888776552  2356655443  33333   35556554322233433 446655211   12468


Q ss_pred             ccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          117 FDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       117 FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                      ||.|+.|.| |.+.            ...++..+.+  ..+|+|+|.+.|+......
T Consensus       123 fD~V~~~~p~~~~~------------~~~~l~~l~~--~~~L~pgG~l~i~~~~~~~  165 (202)
T 2fpo_A          123 HNIVFVDPPFRRGL------------LEETINLLED--NGWLADEALIYVESEVENG  165 (202)
T ss_dssp             EEEEEECCSSSTTT------------HHHHHHHHHH--TTCEEEEEEEEEEEEGGGC
T ss_pred             CCEEEECCCCCCCc------------HHHHHHHHHh--cCccCCCcEEEEEECCCcc
Confidence            999999999 4321            1223333332  3479999999998876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=94.91  E-value=0.36  Score=42.85  Aligned_cols=125  Identities=12%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=||=|.=.++..||+.   +..|+|.-.+  ++..+   .++.|++.+.-. ++.++ .-|+.+.-.    ..
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~~~~~~g~~~~v~~~-~~d~~~~~~----~~  120 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPR--ADRIE---NIQKNIDTYGLSPRMRAV-QGTAPAALA----DL  120 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEE-ESCTTGGGT----TS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCC--HHHHH---HHHHHHHHcCCCCCEEEE-eCchhhhcc----cC
Confidence            45789999999999999999987   3467665444  23322   355665554322 34443 346665211    12


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ..||.|+.+.   +.            +   .. ++..+..+|+|+|.+.++..+.  -+...+.++.++.|+.+.+...
T Consensus       121 ~~~D~v~~~~---~~------------~---~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          121 PLPEAVFIGG---GG------------S---QA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             CCCSEEEECS---CC------------C---HH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCEEEECC---cc------------c---HH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEe
Confidence            4699999775   21            1   23 7888889999999999987653  3445666677777877776543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.88  E-value=0.027  Score=55.15  Aligned_cols=113  Identities=16%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH----HhCCCEEEeecccCCcCcccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL----KKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L----r~~Gv~VlhgVDATkL~~~~~  111 (421)
                      ....+||.||=|+=.++..|+++.+ ..+|++.-.+. + +.+   -++.|+..+    ....++++. -|+.+.-.  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~-~-~l~---~Ar~~~~~~~~gl~~~rv~~~~-~D~~~~l~--~  189 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDK-M-VVD---VSKQFFPDVAIGYEDPRVNLVI-GDGVAFLK--N  189 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCH-H-HHH---HHHHHCHHHHGGGGSTTEEEEE-SCHHHHHH--T
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCH-H-HHH---HHHHHHHhhccccCCCcEEEEE-CCHHHHHH--h
Confidence            3457999999999999999998753 45787776663 2 222   245555544    223455544 46655311  1


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      +....||.||.|.++.-.  ..        .......||+.+..+|+++|.+.+..
T Consensus       190 ~~~~~fDlIi~d~~~p~~--~~--------~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          190 AAEGSYDAVIVDSSDPIG--PA--------KELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             SCTTCEEEEEECCCCTTS--GG--------GGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCccEEEECCCCccC--cc--------hhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            124689999999875321  11        11113689999999999999988764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=94.83  E-value=0.1  Score=45.27  Aligned_cols=128  Identities=20%  Similarity=0.234  Sum_probs=75.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++.+||=+|=|.=.++..|++. + ..+++|.-.+.  ...+   .++.|++...- ++.++ .-|+.++.       ..
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~--~~~~---~a~~~~~~~~~-~~~~~-~~d~~~~~-------~~  112 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDK--EAVD---VLIENLGEFKG-KFKVF-IGDVSEFN-------SR  112 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCH--HHHH---HHHHHTGGGTT-SEEEE-ESCGGGCC-------CC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCH--HHHH---HHHHHHHHcCC-CEEEE-ECchHHcC-------CC
Confidence            4679999999999999999876 3 33577665542  2222   24444432211 34444 34777652       37


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ||.|+.|.|..-. ..           .+...|++.+..+|   |.+.+.... .+-..-.+.+++++.|+.+.....++
T Consensus       113 ~D~v~~~~p~~~~-~~-----------~~~~~~l~~~~~~l---~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~  176 (207)
T 1wy7_A          113 VDIVIMNPPFGSQ-RK-----------HADRPFLLKAFEIS---DVVYSIHLA-KPEVRRFIEKFSWEHGFVVTHRLTTK  176 (207)
T ss_dssp             CSEEEECCCCSSS-ST-----------TTTHHHHHHHHHHC---SEEEEEEEC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCEEEEcCCCccc-cC-----------CchHHHHHHHHHhc---CcEEEEEeC-CcCCHHHHHHHHHHCCCeEEEEEEEe
Confidence            9999999995432 11           11235566666676   556554421 22233346667788898776554433

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=94.81  E-value=0.015  Score=57.26  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcccE
Q 014642           40 QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFDR  119 (421)
Q Consensus        40 rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FDr  119 (421)
                      +||.||=|+-++++.|++.+. ...|++.-+|  .++.+.   +++++.....-.++|++ -||.+.-..  +...+||.
T Consensus        92 rVLdIG~G~G~la~~la~~~p-~~~v~~VEid--p~vi~~---Ar~~~~~~~~~rv~v~~-~Da~~~l~~--~~~~~fDv  162 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYP-QSRNTVVELD--AELARL---SREWFDIPRAPRVKIRV-DDARMVAES--FTPASRDV  162 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHST-TCEEEEEESC--HHHHHH---HHHHSCCCCTTTEEEEE-SCHHHHHHT--CCTTCEEE
T ss_pred             EEEEEECCcCHHHHHHHHHCC-CcEEEEEECC--HHHHHH---HHHhccccCCCceEEEE-CcHHHHHhh--ccCCCCCE
Confidence            899999999999999999774 4467666555  333321   33333221122355443 466654221  23478999


Q ss_pred             EEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          120 IIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       120 IIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ||.|.+...... .         ......||+.+..+|+++|.+.+.+.+..
T Consensus       163 Ii~D~~~~~~~~-~---------~L~t~efl~~~~r~LkpgGvlv~~~~~~~  204 (317)
T 3gjy_A          163 IIRDVFAGAITP-Q---------NFTTVEFFEHCHRGLAPGGLYVANCGDHS  204 (317)
T ss_dssp             EEECCSTTSCCC-G---------GGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred             EEECCCCccccc-h---------hhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            999965432111 0         11125899999999999999988886543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=94.74  E-value=0.19  Score=43.77  Aligned_cols=106  Identities=13%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.+..+||-||=|.=.++..|++..+...++++.-.+  +++.+   .++.++..+.-.++.+ ..-|+...-    ...
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~~----~~~  144 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI--PELAE---KAERTLRKLGYDNVIV-IVGDGTLGY----EPL  144 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHH---HHHHHHHHHTCTTEEE-EESCGGGCC----GGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHH---HHHHHHHHcCCCCeEE-EECCcccCC----CCC
Confidence            3457799999999999999999987544567766544  23332   2455555443223333 334553211    124


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ..||.|+.+++.-...                    ..+..+|+++|.+.++..++
T Consensus       145 ~~fD~v~~~~~~~~~~--------------------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIP--------------------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CCEEEEEESSBBSSCC--------------------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCeeEEEECCchHHHH--------------------HHHHHHcCCCcEEEEEECCC
Confidence            6799999997644320                    25678999999999998765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.70  E-value=0.043  Score=48.46  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~  111 (421)
                      .......+||=||=|.=.++..|++.++.+.+|++.-.+..  ..+   .++.|++...- ..+.++. -|+.+.-....
T Consensus        65 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~---~a~~~~~~~g~~~~i~~~~-~d~~~~~~~~~  138 (229)
T 2avd_A           65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ--PPE---LGRPLWRQAEAEHKIDLRL-KPALETLDELL  138 (229)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSH--HHH---HHHHHHHHTTCTTTEEEEE-SCHHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH--HHH---HHHHHHHHCCCCCeEEEEE-cCHHHHHHHHH
Confidence            34456789999999999999999998754567877766542  111   24445443211 1233433 35543211110


Q ss_pred             ccc--CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 LSK--RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 Lk~--~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      -..  ..||.|+.+.|...                 ...+|+.+..+|+++|.|.+.
T Consensus       139 ~~~~~~~~D~v~~d~~~~~-----------------~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          139 AAGEAGTFDVAVVDADKEN-----------------CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             HTTCTTCEEEEEECSCSTT-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCCCCccEEEECCCHHH-----------------HHHHHHHHHHHcCCCeEEEEE
Confidence            011  68999999877221                 246888899999999998873

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=94.66  E-value=0.32  Score=45.74  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +++ .+||=||=|.=.++..|++.+. ...+++  .|- ..+.+   .++.++....- ..++++. -|+.+   .  +.
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~--~D~-~~~~~---~a~~~~~~~~~~~~v~~~~-~d~~~---~--~~  231 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAEP-SARGVM--LDR-EGSLG---VARDNLSSLLAGERVSLVG-GDMLQ---E--VP  231 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHCT-TCEEEE--EEC-TTCTH---HHHHHTHHHHHTTSEEEEE-SCTTT---C--CC
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHCC-CCEEEE--eCc-HHHHH---HHHHHHhhcCCCCcEEEec-CCCCC---C--CC
Confidence            455 8999999999999999998873 335554  454 32222   24444443321 2344443 35544   1  12


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC---C-CC-----------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT---T-AP-----------------  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g-~P-----------------  172 (421)
                       ..||.|+.+...--.   .         ..-...+++.+..+|+|+|.+.|.-..   . .|                 
T Consensus       232 -~~~D~v~~~~vl~~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
T 2ip2_A          232 -SNGDIYLLSRIIGDL---D---------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGR  298 (334)
T ss_dssp             -SSCSEEEEESCGGGC---C---------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCC
T ss_pred             -CCCCEEEEchhccCC---C---------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCc
Confidence             569999987654322   0         111257788889999999998887321   1 11                 


Q ss_pred             -cCcccHHHHHHhCCcEEEEEee
Q 014642          173 -FCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       173 -Y~sWnI~~LAa~aGL~L~~~~~  194 (421)
                       ++.=++.++.+++||..++..+
T Consensus       299 ~~t~~e~~~ll~~aGf~~~~~~~  321 (334)
T 2ip2_A          299 HRTTEEVVDLLGRGGFAVERIVD  321 (334)
T ss_dssp             CCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHCCCceeEEEE
Confidence             1122445677888998887765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=94.58  E-value=0.037  Score=48.25  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++..   .++++.-.+  +++.+   .+..++.   ..+-.-++..|+.++.     ...
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s--~~~~~---~a~~~~~---~~~~~~~~~~d~~~~~-----~~~  113 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVM--PRAIG---RACQRTK---RWSHISWAATDILQFS-----TAE  113 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESC--HHHHH---HHHHHTT---TCSSEEEEECCTTTCC-----CSC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECC--HHHHH---HHHHhcc---cCCCeEEEEcchhhCC-----CCC
Confidence            345689999999999999999873   356665443  22222   1333322   2333345566887775     247


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .||.|+.+...--..           +...+..+++.+..+|+|+|.+.|+....
T Consensus       114 ~fD~v~~~~~l~~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          114 LFDLIVVAEVLYYLE-----------DMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CEEEEEEESCGGGSS-----------SHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CccEEEEccHHHhCC-----------CHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            899999985433220           12345678999999999999999976544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=94.53  E-value=0.21  Score=46.29  Aligned_cols=108  Identities=20%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--hCCCEEEeecccCCcCccc--cc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK--KLGASIIHGVDATEMKEHS--EL  112 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr--~~Gv~VlhgVDATkL~~~~--~L  112 (421)
                      +..+||=||=|.=.++..|++.+....+++++-.. .+.+ +   .++.+++...  ..++ -+...|+.++....  .+
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s-~~~~-~---~a~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~  109 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS-ATMI-K---TAEVIKEGSPDTYKNV-SFKISSSDDFKFLGADSV  109 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESC-HHHH-H---HHHHHHHHCC-CCTTE-EEEECCTTCCGGGCTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC-HHHH-H---HHHHHHHhccCCCCce-EEEEcCHHhCCccccccc
Confidence            57899999999999999999876446678777554 2222 2   2444544431  1133 34456887765221  11


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ..+.||.|+.++..--.    +           ...+++.+..+|+|+|.+.|
T Consensus       110 ~~~~fD~V~~~~~l~~~----~-----------~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWF----D-----------FEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TSSCEEEEEEESCGGGS----C-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHh----C-----------HHHHHHHHHHhcCCCcEEEE
Confidence            23789999998642221    1           35788999999999999887

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.46  E-value=0.31  Score=43.20  Aligned_cols=115  Identities=8%  Similarity=0.062  Sum_probs=72.0

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccc-
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSE-  111 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~-  111 (421)
                      ...+..+||=||=|.=..+..||+.++.+..|++.-.+  ++..+   .++.|++.+.-. .+++ ..-|+.+.-.... 
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~-~~~d~~~~l~~~~~  128 (221)
T 3u81_A           55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEIN--PDCAA---ITQQMLNFAGLQDKVTI-LNGASQDLIPQLKK  128 (221)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHTCGGGEEE-EESCHHHHGGGTTT
T ss_pred             HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC--hHHHH---HHHHHHHHcCCCCceEE-EECCHHHHHHHHHH
Confidence            34467899999999999999999987545567766554  23322   366676654322 2444 4446655322111 


Q ss_pred             -cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          112 -LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       112 -Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                       .....||.|+.+.++...              .-...++..+ .+|+|+|.|.+.-..
T Consensus       129 ~~~~~~fD~V~~d~~~~~~--------------~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          129 KYDVDTLDMVFLDHWKDRY--------------LPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             TSCCCCCSEEEECSCGGGH--------------HHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             hcCCCceEEEEEcCCcccc--------------hHHHHHHHhc-cccCCCeEEEEeCCC
Confidence             112689999998654321              1123567777 899999998775443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.46  E-value=0.26  Score=45.07  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=66.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++ .  +.+++++-.. .+ +.+.   +..++     .++.+. ..|+.++.    + ..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~--~~~v~gvD~s-~~-~~~~---a~~~~-----~~~~~~-~~d~~~~~----~-~~  116 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-S--GAEVLGTDNA-AT-MIEK---ARQNY-----PHLHFD-VADARNFR----V-DK  116 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-T--TCEEEEEESC-HH-HHHH---HHHHC-----TTSCEE-ECCTTTCC----C-SS
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-C--CCeEEEEECC-HH-HHHH---HHhhC-----CCCEEE-ECChhhCC----c-CC
Confidence            4567999999999999999998 2  3467766543 22 2221   22222     245444 34777654    2 36


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.++..--.   .+           ...+++.+..+|+|+|.+.++...
T Consensus       117 ~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          117 PLDAVFSNAMLHWV---KE-----------PEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             CEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcCEEEEcchhhhC---cC-----------HHHHHHHHHHhcCCCcEEEEEecC
Confidence            89999998754322   11           236788899999999999987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=94.43  E-value=0.092  Score=46.85  Aligned_cols=148  Identities=11%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH--HHHHHhhhhH---------HHHHHHHHhC------------
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY--ETVVKKFKEA---------RSNLDTLKKL------------   93 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~--eeL~~KY~~a---------~~Nl~~Lr~~------------   93 (421)
                      +..+||=||=|.=.++..|++..  ..+|+++-+...  +.+.++....         ..-+..++..            
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            45689999999877777777653  236776655321  1111111110         0001111111            


Q ss_pred             -CCEEEeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642           94 -GASIIHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus        94 -Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                       .+.-+...|++++.....+....||.||.++-.-.          +..+..-+..+++.+..+|+|+|.+.++...+..
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~----------~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~  203 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDA----------ACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS  203 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH----------HCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhh----------hcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Confidence             13135567888765322233478999998864221          1112233567888899999999998887643321


Q ss_pred             -------------cCcccHHHHHHhCCcEEEEEeeCC
Q 014642          173 -------------FCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       173 -------------Y~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                                   ++.=.+.++.+++||.+++...+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          204 YYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             EEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             eEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                         122267788899999999887654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.38  E-value=0.054  Score=48.70  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCccc---
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHS---  110 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~---  110 (421)
                      ..+..+||-||=|.=.+++.|++.++.+.+|++.-.+.  ++.+   .++.|++...-.+ +.+ ..-|+...-...   
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~---~a~~~~~~~g~~~~v~~-~~~d~~~~~~~~~~~  131 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSE--EWTN---VARKYWKENGLENKIFL-KLGSALETLQVLIDS  131 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCH--HHHH---HHHHHHHHTTCGGGEEE-EESCHHHHHHHHHHC
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHH---HHHHHHHHcCCCCCEEE-EECCHHHHHHHHHhh
Confidence            34578999999999999999999876455777765542  2222   2444544321111 333 334654421100   


Q ss_pred             --------ccc-c-CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          111 --------ELS-K-RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       111 --------~Lk-~-~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                              .+. . ..||.|+.++.      .++           +..+|+.+..+|+++|.|.+.-
T Consensus       132 ~~~~~~~~~f~~~~~~fD~I~~~~~------~~~-----------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          132 KSAPSWASDFAFGPSSIDLFFLDAD------KEN-----------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SSCCGGGTTTCCSTTCEEEEEECSC------GGG-----------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccccccCCCCCcCEEEEeCC------HHH-----------HHHHHHHHHHHcCCCeEEEEEc
Confidence                    011 1 68999999843      111           2378899999999999998864

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=94.32  E-value=0.11  Score=47.25  Aligned_cols=102  Identities=6%  Similarity=0.095  Sum_probs=66.5

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC--CCEEEeecccCCcCcccccccCc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL--GASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~--Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      .+||=||=|.=..++.||++++.+..|++.-.+  ++..+   .++.|++...-.  .++++ .-||.++-..  +....
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~g~~~~~i~~~-~gda~~~l~~--~~~~~  129 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPE--SEHQR---QAKALFREAGYSPSRVRFL-LSRPLDVMSR--LANDS  129 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSC--HHHHH---HHHHHHHHTTCCGGGEEEE-CSCHHHHGGG--SCTTC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCcCcEEEE-EcCHHHHHHH--hcCCC
Confidence            399999999999999999988655567665554  33322   355665543211  23333 3466554221  22478


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ||.|+.+.+...                 ...||+.+..+|+|||.|.+
T Consensus       130 fD~V~~d~~~~~-----------------~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          130 YQLVFGQVSPMD-----------------LKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEEEEECCCTTT-----------------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCeEEEcCcHHH-----------------HHHHHHHHHHHcCCCcEEEE
Confidence            999998753211                 23588899999999999887

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=94.32  E-value=0.12  Score=49.89  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++.+||=||=|.=.++..|++. | +..++|.-.+.   +.+   .++.|++...- ..+++ ..-|+.++.    +.
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~---~~~---~a~~~~~~~~~~~~i~~-~~~d~~~~~----~~  128 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE---ILY---QAMDIIRLNKLEDTITL-IKGKIEEVH----LP  128 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST---HHH---HHHHHHHHTTCTTTEEE-EESCTTTSC----CS
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH---HHH---HHHHHHHHcCCCCcEEE-EEeeHHHhc----CC
Confidence            356789999999998899999886 3 45788877652   332   25555543221 12333 455777652    34


Q ss_pred             cCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          114 KRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       114 ~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ..+||.||.|. ++...            +...+..++..+..+|+|+|.+.
T Consensus       129 ~~~~D~Ivs~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          129 VEKVDVIISEWMGYFLL------------FESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CSCEEEEEECCCBTTBT------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCcEEEEEEcCchhhcc------------CHHHHHHHHHHHHhhcCCCcEEE
Confidence            57899999987 44432            22345678888899999999876

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=94.30  E-value=0.079  Score=48.57  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=66.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE-EEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS-IIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~-VlhgVDATkL~~~~~Lk~~  115 (421)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +...+   .++.++.   ..|.. -+...|+.++..     ..
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s--~~~~~---~a~~~~~---~~~~~~~~~~~d~~~~~~-----~~  183 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHN--ENSIA---FLNETKE---KENLNISTALYDINAANI-----QE  183 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHH---HTTCCEEEEECCGGGCCC-----CS
T ss_pred             CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECC--HHHHH---HHHHHHH---HcCCceEEEEeccccccc-----cC
Confidence            5679999999999999999987   3366665443  22222   2333433   33432 233456666542     57


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      .||.|+.+.+..-.            +...+..+++.+..+|+++|.+.|..
T Consensus       184 ~fD~i~~~~~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          184 NYDFIVSTVVFMFL------------NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CEEEEEECSSGGGS------------CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEEccchhhC------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            89999998754321            11224578899999999999966543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=94.27  E-value=0.19  Score=47.63  Aligned_cols=133  Identities=13%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=||=|.=.++..|++.+. .  +..|.+|-. ++.+   .++.++....-.+-.-+..-|+.+...   .....|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~~-~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~  249 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-Q--LTGQIWDLP-TTRD---AARKTIHAHDLGGRVEFFEKNLLDARN---FEGGAA  249 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-T--CEEEEEECG-GGHH---HHHHHHHHTTCGGGEEEEECCTTCGGG---GTTCCE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-C--CeEEEEECH-HHHH---HHHHHHHhcCCCCceEEEeCCcccCcc---cCCCCc
Confidence            67999999999999999999874 2  344556653 2332   244444332111112334456655431   123559


Q ss_pred             cEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC------------------------CCCc
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT------------------------TAPF  173 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~------------------------g~PY  173 (421)
                      |.|+.+.-.--.   .         ..-...+++.+..+|+|+|.+.|.-..                        +..+
T Consensus       250 D~v~~~~vlh~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (352)
T 3mcz_A          250 DVVMLNDCLHYF---D---------AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELH  317 (352)
T ss_dssp             EEEEEESCGGGS---C---------HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCC
T ss_pred             cEEEEecccccC---C---------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcC
Confidence            999997643322   1         111457888899999999998875321                        1112


Q ss_pred             CcccHHHHHHhCCcEEEEE
Q 014642          174 CKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       174 ~sWnI~~LAa~aGL~L~~~  192 (421)
                      +.=++.++.+++||.+++.
T Consensus       318 t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          318 PTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             CHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHCCCceeee
Confidence            2224667888999998883

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=94.22  E-value=0.098  Score=50.71  Aligned_cols=106  Identities=18%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||=|.=.++..|+++ | ...++|.-..  + +.+   .+..+++...-.+..-+..-|+.++.    +...
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s--~-~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~  132 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS--S-ISD---YAVKIVKANKLDHVVTIIKGKVEEVE----LPVE  132 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS--T-HHH---HHHHHHHHTTCTTTEEEEESCTTTCC----CSSS
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH--H-HHH---HHHHHHHHcCCCCcEEEEECcHHHcc----CCCC
Confidence            45679999999999999999987 3 4578887666  2 222   24444443322232345566777763    3457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      +||.||.|.+......           ...+..++..+..+|+|+|.+.
T Consensus       133 ~fD~Iis~~~~~~l~~-----------~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFY-----------ESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             CEEEEEECCCBBTBTB-----------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceEEEEEccccccccC-----------chhHHHHHHHHHHhCCCCCEEc
Confidence            8999999976444312           1224577888889999999975

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.21  E-value=0.13  Score=49.91  Aligned_cols=131  Identities=16%  Similarity=0.073  Sum_probs=83.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=+|=|.=.|+.++++.++...+|+|.-.|....  +   -+         .++.+ +.-|+....     ...+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~--~---~a---------~~~~~-~~~D~~~~~-----~~~~   98 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL--D---LP---------PWAEG-ILADFLLWE-----PGEA   98 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC--C---CC---------TTEEE-EESCGGGCC-----CSSC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH--H---hC---------CCCcE-EeCChhhcC-----ccCC
Confidence            456999999999999999998875456888887775321  0   01         23443 344665532     2368


Q ss_pred             ccEEEEcCCCCCCCCCcc----cHHHHHH-h----------HHHHHHHHHhhHhccCCCCeEEEEecCCCCc--CcccHH
Q 014642          117 FDRIIFNFPHAGFHGKEE----DDEVIRM-H----------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPF--CKWHIE  179 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd----~~~~I~~-n----------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY--~sWnI~  179 (421)
                      ||.||.|=|..+......    .....+. .          ..+...|++.+..+|+++|.+.+.+.++--.  ..=.+.
T Consensus        99 fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr  178 (421)
T 2ih2_A           99 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLR  178 (421)
T ss_dssp             EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHH
T ss_pred             CCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHH
Confidence            999999999887532100    0011111 1          1256689999999999999998888664110  112466


Q ss_pred             HHHHhCCc
Q 014642          180 ELARKHSL  187 (421)
Q Consensus       180 ~LAa~aGL  187 (421)
                      ++..+.++
T Consensus       179 ~~l~~~~~  186 (421)
T 2ih2_A          179 EFLAREGK  186 (421)
T ss_dssp             HHHHHHSE
T ss_pred             HHHHhcCC
Confidence            66666776

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.19  E-value=0.63  Score=45.55  Aligned_cols=107  Identities=16%  Similarity=0.261  Sum_probs=69.9

Q ss_pred             eccCCCCeEEEEecCChhHHHHH-HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      ....+.++||-||=|.-.++..+ |+..  +..|++.-.+  +++.+   .|+.+++.+.-..++++ .-||.++.    
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~--ga~V~gIDis--~~~l~---~Ar~~~~~~gl~~v~~v-~gDa~~l~----  185 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVY--GMRVNVVEIE--PDIAE---LSRKVIEGLGVDGVNVI-TGDETVID----  185 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTT--CCEEEEEESS--HHHHH---HHHHHHHHHTCCSEEEE-ESCGGGGG----
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHcc--CCEEEEEECC--HHHHH---HHHHHHHhcCCCCeEEE-ECchhhCC----
Confidence            34567899999999998888554 4443  3466666554  33333   36666665432234433 45776652    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                        ...||.|+.+.-      .++           ...+|+.+..+|+|||.+.+....+
T Consensus       186 --d~~FDvV~~~a~------~~d-----------~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          186 --GLEFDVLMVAAL------AEP-----------KRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             --GCCCSEEEECTT------CSC-----------HHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             --CCCcCEEEECCC------ccC-----------HHHHHHHHHHHcCCCcEEEEEcCcc
Confidence              478999987432      111           2478888999999999999986544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.08  E-value=0.17  Score=47.98  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=67.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=||=|.=.++..|++..+...++++.-.+. + ..+   .++.|++.+.-.++.++ .-|+.++..    ...
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~-~-~~~---~a~~~~~~~g~~~v~~~-~~d~~~~~~----~~~  143 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR-K-ICE---IAKRNVERLGIENVIFV-CGDGYYGVP----EFS  143 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH-H-HHH---HHHHHHHHTTCCSEEEE-ESCGGGCCG----GGC
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCH-H-HHH---HHHHHHHHcCCCCeEEE-ECChhhccc----cCC
Confidence            4678999999999999999998865334677776652 2 222   35555544322234443 447765421    236


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .||+|+.+.+.-.. .                   ..+..+|+|+|.+.|...
T Consensus       144 ~fD~Iv~~~~~~~~-~-------------------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          144 PYDVIFVTVGVDEV-P-------------------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CEEEEEECSBBSCC-C-------------------HHHHHHEEEEEEEEEEBC
T ss_pred             CeEEEEEcCCHHHH-H-------------------HHHHHhcCCCcEEEEEEC
Confidence            79999999775543 1                   245669999999999853

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.06  E-value=0.79  Score=42.72  Aligned_cols=138  Identities=12%  Similarity=0.153  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHH-----HHHHh-----CCCEEEeecccCC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNL-----DTLKK-----LGASIIHGVDATE  105 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl-----~~Lr~-----~Gv~VlhgVDATk  105 (421)
                      ..+.+||=||=|.=.++++|++. + ...|+|+-+-+.+.+.    .++.|+     +...-     ..+.+. ..|..+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~----~a~~n~~~N~~~~~~~~~~~~~~v~~~-~~~~~~  150 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILN----SLESNIREHTANSCSSETVKRASPKVV-PYRWGD  150 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHH----HHHHHHHTTCC----------CCCEEE-ECCTTS
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHH----HHHHHHHHhhhhhcccccCCCCCeEEE-EecCCC
Confidence            35679999999998899988875 3 3478888872233332    244555     22110     134443 223222


Q ss_pred             cCcccc--cccCcccEEEE-cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccC---C--CCeEEEEecCCCCc---C
Q 014642          106 MKEHSE--LSKRKFDRIIF-NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLR---P--RGEVHVSHKTTAPF---C  174 (421)
Q Consensus       106 L~~~~~--Lk~~~FDrIIF-NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~---~--~GeIHVTLk~g~PY---~  174 (421)
                      ......  +....||.||. +-+|.-               ..+..+++.+..+|+   +  +|.+.|......|.   .
T Consensus       151 ~~~~~~~~~~~~~fD~Ii~~dvl~~~---------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~  215 (281)
T 3bzb_A          151 SPDSLQRCTGLQRFQVVLLADLLSFH---------------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAER  215 (281)
T ss_dssp             CTHHHHHHHSCSSBSEEEEESCCSCG---------------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------
T ss_pred             ccHHHHhhccCCCCCEEEEeCcccCh---------------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchh
Confidence            111110  13478999997 433321               114467778888999   9  99998877665442   3


Q ss_pred             cccHHHHHHhCC-cEEEEEeeC
Q 014642          175 KWHIEELARKHS-LLRLDCVQF  195 (421)
Q Consensus       175 sWnI~~LAa~aG-L~L~~~~~F  195 (421)
                      .-.+.+++++.| |.+......
T Consensus       216 ~~~~~~~l~~~G~f~v~~~~~~  237 (281)
T 3bzb_A          216 DLAFFRLVNADGALIAEPWLSP  237 (281)
T ss_dssp             CTHHHHHHHHSTTEEEEEEECC
T ss_pred             HHHHHHHHHhcCCEEEEEeccc
Confidence            456777888999 998877543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.03  E-value=0.1  Score=56.10  Aligned_cols=151  Identities=16%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             cccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccC
Q 014642           26 KEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDAT  104 (421)
Q Consensus        26 ~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDAT  104 (421)
                      ..+.+++..+.++.+||=+|=|.=.||+.+++. | +..|+|  .|.-+...+   .++.|++...-. .-..+..-|+.
T Consensus       528 r~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~a--VD~s~~al~---~a~~N~~~ngl~~~~v~~i~~D~~  600 (703)
T 3v97_A          528 RIARRMLGQMSKGKDFLNLFSYTGSATVHAGLG-G-ARSTTT--VDMSRTYLE---WAERNLRLNGLTGRAHRLIQADCL  600 (703)
T ss_dssp             HHHHHHHHHHCTTCEEEEESCTTCHHHHHHHHT-T-CSEEEE--EESCHHHHH---HHHHHHHHTTCCSTTEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCcEEEeeechhHHHHHHHHC-C-CCEEEE--EeCCHHHHH---HHHHHHHHcCCCccceEEEecCHH
Confidence            345566777778899999999988899998873 2 444555  443233332   366676532211 11234556776


Q ss_pred             CcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHh
Q 014642          105 EMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARK  184 (421)
Q Consensus       105 kL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~  184 (421)
                      +.-..   ...+||.||.|-|..+. ++..  ..+.........++..|..+|+|+|.+.++.+.....-  + .+.-.+
T Consensus       601 ~~l~~---~~~~fD~Ii~DPP~f~~-~~~~--~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~--~-~~~l~~  671 (703)
T 3v97_A          601 AWLRE---ANEQFDLIFIDPPTFSN-SKRM--EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRM--D-LDGLAK  671 (703)
T ss_dssp             HHHHH---CCCCEEEEEECCCSBC----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCC--C-HHHHHH
T ss_pred             HHHHh---cCCCccEEEECCccccC-Cccc--hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc--C-HHHHHH
Confidence            63111   24689999999998874 2210  01112345567788889999999999998877633211  1 344456


Q ss_pred             CCcEEEEE
Q 014642          185 HSLLRLDC  192 (421)
Q Consensus       185 aGL~L~~~  192 (421)
                      .|+.+...
T Consensus       672 ~g~~~~~i  679 (703)
T 3v97_A          672 LGLKAQEI  679 (703)
T ss_dssp             TTEEEEEC
T ss_pred             cCCceeee
Confidence            77765443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=94.00  E-value=0.1  Score=50.87  Aligned_cols=127  Identities=11%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEee----cccCCcCcccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHG----VDATEMKEHSE  111 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vlhg----VDATkL~~~~~  111 (421)
                      .+..+||=||=|+=.++..|++.   +.++++.-..  +.+          ++..++.|..+...    .|+..+    .
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s--~~~----------~~~a~~~~~~~~~~~~~~~~~~~l----~  166 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPS--SGV----------AAKAREKGIRVRTDFFEKATADDV----R  166 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCC--HHH----------HHHHHTTTCCEECSCCSHHHHHHH----H
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCC--HHH----------HHHHHHcCCCcceeeechhhHhhc----c
Confidence            35679999999999999999875   2356655442  222          22334445544331    223222    2


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC------CC-----------cC
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT------AP-----------FC  174 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g------~P-----------Y~  174 (421)
                      +....||.|+.++-.--.   .|           ...||+.+..+|+|+|.+.++....      ..           ++
T Consensus       167 ~~~~~fD~I~~~~vl~h~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHI---PY-----------VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS  232 (416)
T ss_dssp             HHHCCEEEEEEESCGGGC---TT-----------HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred             cCCCCEEEEEECChHHhc---CC-----------HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence            345789999998652221   11           4688999999999999999975431      00           12


Q ss_pred             cccHHHHHHhCCcEEEEEeeC
Q 014642          175 KWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       175 sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .-.+..+++++||.+++...+
T Consensus       233 ~~~l~~ll~~aGf~~~~~~~~  253 (416)
T 4e2x_A          233 ATSVQGMAQRCGFELVDVQRL  253 (416)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEEEc
Confidence            226888999999999988775

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=93.97  E-value=0.14  Score=49.48  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ..+.+||=+|=|.=.||+. |+  + +..++|.-.+  .+..+   .++.|++...-.+-..++.-|+.++.       .
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s--~~ai~---~a~~n~~~n~l~~~v~~~~~D~~~~~-------~  257 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDIN--PHAIE---LLKKNIKLNKLEHKIIPILSDVREVD-------V  257 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEEESCGGGCC-------C
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEEECChHHhc-------C
Confidence            4677999999999999988 77  3 4566665444  22222   35667654332122344556776653       6


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      .||.|+.|-|+.+.                  .|+..+..+|+++|.+++.-+...
T Consensus       258 ~fD~Vi~dpP~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          258 KGNRVIMNLPKFAH------------------KFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CEEEEEECCTTTGG------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CCcEEEECCcHhHH------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence            79999999997751                  677788899999999999877654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=93.91  E-value=0.16  Score=44.56  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ....+||=||=|.=.++..|++.++.+..|++.-.+  ++..+   .++.|++...-. .+.++ .-|+.++-..  + .
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~~~--~-~  125 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPD--RDNVE---HARRMLHDNGLIDRVELQ-VGDPLGIAAG--Q-R  125 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHSGGGGEEEE-ESCHHHHHTT--C-C
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHCCCCceEEEE-EecHHHHhcc--C-C
Confidence            456799999999999999999887545567665544  22222   355565543221 23333 3466543211  2 2


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      . ||.|+.+.+...                 ...+|+.+..+|+|+|.|.+.
T Consensus       126 ~-fD~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          126 D-IDILFMDCDVFN-----------------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             S-EEEEEEETTTSC-----------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             C-CCEEEEcCChhh-----------------hHHHHHHHHHhcCCCeEEEEE
Confidence            4 999999854221                 246888999999999998773

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=93.77  E-value=0.35  Score=46.28  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=81.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++++.   ++.+|.+|-.+.+.++      +++...-.+-.-+..-|+.  ..   +. 
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~~~------~~~~~~~~~~v~~~~~d~~--~~---~p-  246 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP---GLQGVLLDRAEVVARH------RLDAPDVAGRWKVVEGDFL--RE---VP-  246 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT---TEEEEEEECHHHHTTC------CCCCGGGTTSEEEEECCTT--TC---CC-
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC---CCEEEEecCHHHhhcc------cccccCCCCCeEEEecCCC--CC---CC-
Confidence            45677999999999999999999874   4566777764433211      1110011111223344554  11   12 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC----CC------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT----AP------------------  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g----~P------------------  172 (421)
                       .||.|+.++-.--.   .         ..-...+++.+..+|+|+|.+.|.-...    .|                  
T Consensus       247 -~~D~v~~~~vlh~~---~---------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~  313 (348)
T 3lst_A          247 -HADVHVLKRILHNW---G---------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE  313 (348)
T ss_dssp             -CCSEEEEESCGGGS---C---------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCC
T ss_pred             -CCcEEEEehhccCC---C---------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcC
Confidence             79999998653222   1         1113467888999999999998854211    11                  


Q ss_pred             cCcccHHHHHHhCCcEEEEEee
Q 014642          173 FCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       173 Y~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ++.=++.++.+++||..++..+
T Consensus       314 ~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          314 RTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCceEEEEE
Confidence            1222456788899999998876

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=93.69  E-value=0.2  Score=44.48  Aligned_cols=115  Identities=15%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc-
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL-  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L-  112 (421)
                      .+.++.+||=+|=|.=.+|..|++.   +..|+|.-+....      +          ..++.++ ..|+++......+ 
T Consensus        22 ~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~----------~~~v~~~-~~D~~~~~~~~~~~   81 (191)
T 3dou_A           22 VVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------E----------IAGVRFI-RCDIFKETIFDDID   81 (191)
T ss_dssp             CSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------C----------CTTCEEE-ECCTTSSSHHHHHH
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------c----------CCCeEEE-EccccCHHHHHHHH
Confidence            3456889999999999999999987   4578888776421      0          1266654 4588775432111 


Q ss_pred             ---c---cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          113 ---S---KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       113 ---k---~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                         .   ..+||.|+-|-|-... |...  ........|+...+..|..+|+|+|.+.+.+..+.
T Consensus        82 ~~~~~~~~~~~D~Vlsd~~~~~~-g~~~--~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           82 RALREEGIEKVDDVVSDAMAKVS-GIPS--RDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHHHTCSSEEEEEECCCCCCC-SCHH--HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             HHhhcccCCcceEEecCCCcCCC-CCcc--cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence               1   1489999999764432 3221  12233456778889999999999999999998875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=93.66  E-value=0.21  Score=45.95  Aligned_cols=110  Identities=7%  Similarity=0.013  Sum_probs=69.0

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ......+||=||=|.=..++.||+++..+..|++.-.+..  ..+   -++.|++...- ..++++ .-||.+.-....-
T Consensus        76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~--~~~---~a~~~~~~~g~~~~i~~~-~gda~~~l~~l~~  149 (247)
T 1sui_A           76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYE---LGLPVIKKAGVDHKIDFR-EGPALPVLDEMIK  149 (247)
T ss_dssp             HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHH---HHHHHHHHTTCGGGEEEE-ESCHHHHHHHHHH
T ss_pred             HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHH---HHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHh
Confidence            3345679999999999999999998754456776665542  221   34555543211 123333 3466543111000


Q ss_pred             ---ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 ---SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 ---k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                         ....||.|+.+.+...                 ...||+.+..+|+|||.|.+.
T Consensus       150 ~~~~~~~fD~V~~d~~~~~-----------------~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          150 DEKNHGSYDFIFVDADKDN-----------------YLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             SGGGTTCBSEEEECSCSTT-----------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             ccCCCCCEEEEEEcCchHH-----------------HHHHHHHHHHhCCCCeEEEEe
Confidence               1468999999855211                 246888899999999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=93.61  E-value=0.35  Score=42.88  Aligned_cols=106  Identities=15%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCC-----CCcEEeccccCHHHHHHhhhhHHHHHHHHH-----hCCCEEEeecccC
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGS-----ASNICASSLDSYETVVKKFKEARSNLDTLK-----KLGASIIHGVDAT  104 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs-----~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr-----~~Gv~VlhgVDAT  104 (421)
                      ..++.+||-||=|.=.++..|++..+.     ...+++.-.+  +++.+   .++.|+..+.     ...+.+. .-|+.
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~~~~~v~~~-~~d~~  155 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQ--AELVR---RSKANLNTDDRSMLDSGQLLIV-EGDGR  155 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESC--HHHHH---HHHHHHHHHHHHHHHHTSEEEE-ESCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcC--HHHHH---HHHHHHHhcCccccCCCceEEE-ECCcc
Confidence            355789999999999999999987642     1356665443  33333   2555655543     3445544 34665


Q ss_pred             CcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          105 EMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       105 kL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      +.  .  .....||+|+.+.+....                    ...+..+|+++|.+.+++...
T Consensus       156 ~~--~--~~~~~fD~I~~~~~~~~~--------------------~~~~~~~LkpgG~lvi~~~~~  197 (227)
T 1r18_A          156 KG--Y--PPNAPYNAIHVGAAAPDT--------------------PTELINQLASGGRLIVPVGPD  197 (227)
T ss_dssp             GC--C--GGGCSEEEEEECSCBSSC--------------------CHHHHHTEEEEEEEEEEESCS
T ss_pred             cC--C--CcCCCccEEEECCchHHH--------------------HHHHHHHhcCCCEEEEEEecC
Confidence            41  1  123679999998764321                    245778999999999998763

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=93.60  E-value=0.2  Score=46.83  Aligned_cols=110  Identities=17%  Similarity=0.260  Sum_probs=69.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCC-CCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGS-ASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs-~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .++.+||=||=|.=.++++|++.++. +.+||  ..|--+++++   .|+.+++..... .+.++ .-|+.++.      
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~--gvD~s~~ml~---~A~~~~~~~~~~~~v~~~-~~D~~~~~------  136 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKII--AIDNSPAMIE---RCRRHIDAYKAPTPVDVI-EGDIRDIA------  136 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEE--EEESCHHHHH---HHHHHHHTSCCSSCEEEE-ESCTTTCC------
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEE--EEECCHHHHH---HHHHHHHhhccCceEEEe-eccccccc------
Confidence            45789999999999999999998742 33555  4564344443   255555443322 24444 34777653      


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      -..||.|+.||=.- +  ..         ..-...+|+.+..+|+|||.+.|+-..
T Consensus       137 ~~~~d~v~~~~~l~-~--~~---------~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          137 IENASMVVLNFTLQ-F--LE---------PSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             CCSEEEEEEESCGG-G--SC---------HHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccccccceeeeeee-e--cC---------chhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            24599999987311 1  00         001135677888899999998887543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=93.58  E-value=0.089  Score=51.62  Aligned_cols=110  Identities=19%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +..++.+||=||=|.=.++..|+++ | +..|+|.-..  +.+ +   .++.+++...-.+...+..-|+.++..    .
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s--~~~-~---~a~~~~~~~~~~~~v~~~~~d~~~~~~----~  127 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT--KMA-D---HARALVKANNLDHIVEVIEGSVEDISL----P  127 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS--TTH-H---HHHHHHHHTTCTTTEEEEESCGGGCCC----S
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH--HHH-H---HHHHHHHHcCCCCeEEEEECchhhcCc----C
Confidence            3456789999999999999999987 3 4478887665  222 2   234444332212223445567776642    2


Q ss_pred             cCcccEEEEcC-CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          114 KRKFDRIIFNF-PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       114 ~~~FDrIIFNF-PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                       .+||.||.|. +|... .           ...+..+++.+..+|+|+|.+.++..
T Consensus       128 -~~~D~Iv~~~~~~~l~-~-----------e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          128 -EKVDVIISEWMGYFLL-R-----------ESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             -SCEEEEEECCCBTTBT-T-----------TCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             -CcceEEEEcChhhccc-c-----------hHHHHHHHHHHHhhCCCCeEEEEecC
Confidence             7899999987 34432 1           12255678888899999998865543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=93.48  E-value=0.14  Score=47.96  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEecccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLD   71 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD   71 (421)
                      ...+||=||=|+=.++..|++.++ +..|+++-.+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis   79 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDID   79 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCC
Confidence            467999999999999999999985 4578887766

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=93.48  E-value=0.13  Score=48.45  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHH----HHHhCCCEEEeecccCCcCccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD----TLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~----~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+||.||=|+=.+++.|+++ +  ..|++.-.|.  ++.+.   +++++.    .+..-.++++.+ ||.+.-     
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~--~~i~~---ar~~~~~~~~~~~~~rv~~~~~-D~~~~~-----  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADE--KILDS---FISFFPHFHEVKNNKNFTHAKQ-LLDLDI-----  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCH--HHHGG---GTTTSTTHHHHHTCTTEEEESS-GGGSCC-----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCH--HHHHH---HHHHHHhhccccCCCeEEEEec-hHHHHH-----
Confidence            3579999999999999999987 5  5787777763  22221   222222    233335666543 666532     


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                        .+||.||-+.+.       .    .        +||+.+..+|+|+|.+.+..
T Consensus       138 --~~fD~Ii~d~~d-------p----~--------~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          138 --KKYDLIFCLQEP-------D----I--------HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             --CCEEEEEESSCC-------C----H--------HHHHHHHTTEEEEEEEEEEE
T ss_pred             --hhCCEEEECCCC-------h----H--------HHHHHHHHhcCCCcEEEEEc
Confidence              679999998431       0    1        19999999999999988864

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=93.45  E-value=0.3  Score=42.69  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeecccCCcCccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-----KKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-----r~~Gv~VlhgVDATkL~~~~  110 (421)
                      .+..+||=||=|.=.++..|++..+ ..++++.-.+ .+ +.+   .+..++...     ....+.++. -|+..+.   
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s-~~-~~~---~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~---   97 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVS-YR-SLE---IAQERLDRLRLPRNQWERLQLIQ-GALTYQD---   97 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESC-HH-HHH---HHHHHHTTCCCCHHHHTTEEEEE-CCTTSCC---
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECC-HH-HHH---HHHHHHHHhcCCcccCcceEEEe-CCccccc---
Confidence            3567999999999999999998653 3467766554 22 222   233333211     011344443 3665433   


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                       .....||.|+.+...--.            ...-+..+++.+..+|+|+|.+.++..
T Consensus        98 -~~~~~fD~v~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           98 -KRFHGYDAATVIEVIEHL------------DLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             -GGGCSCSEEEEESCGGGC------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             -ccCCCcCEEeeHHHHHcC------------CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence             234789999988643321            122346788899999999997766654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=93.44  E-value=0.24  Score=44.75  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhh-CCCCcEEeccccCHHHHHHhhhhHHHHHHHH-------------------------
Q 014642           37 SKHQILLVGEGDFSFSFALSQKF-GSASNICASSLDSYETVVKKFKEARSNLDTL-------------------------   90 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~-gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-------------------------   90 (421)
                      ...+||=+|=|.=.|+..|++.. ..+.+|+|+-.+. +.+.    .|+.|+...                         
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~-~~l~----~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDP-APLE----LAAKNLALLSPAGLTARELERREQSERFGKPSYL  125 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCH-HHHH----HHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCH-HHHH----HHHHHHHHhhhccccccchhhhhhhhhcccccch
Confidence            35689999988888999998772 1245687776653 2221    122222211                         


Q ss_pred             -------------HhCC---CEEEeecccCCcCccccc-ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhh
Q 014642           91 -------------KKLG---ASIIHGVDATEMKEHSEL-SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNA  153 (421)
Q Consensus        91 -------------r~~G---v~VlhgVDATkL~~~~~L-k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA  153 (421)
                                   ...|   -..+..-|+.+......+ ....||.|+.|.|.......+.     .....++..|++.+
T Consensus       126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~-----~~~~~~~~~~l~~~  200 (250)
T 1o9g_A          126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG-----QVPGQPVAGLLRSL  200 (250)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----CCCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----cccccHHHHHHHHH
Confidence                         0111   001344565542110000 2347999999999776421110     01235667899999


Q ss_pred             HhccCCCCeEEEE
Q 014642          154 SGMLRPRGEVHVS  166 (421)
Q Consensus       154 ~~lL~~~GeIHVT  166 (421)
                      ..+|+|+|.+.++
T Consensus       201 ~~~LkpgG~l~~~  213 (250)
T 1o9g_A          201 ASALPAHAVIAVT  213 (250)
T ss_dssp             HHHSCTTCEEEEE
T ss_pred             HHhcCCCcEEEEe
Confidence            9999999999984

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=93.42  E-value=0.31  Score=43.81  Aligned_cols=103  Identities=21%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCc-ccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKE-HSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~-~~~Lk  113 (421)
                      ....+||=||=|.=.++..||+.+. +..|++.-.+  ++..+   .++.|++...-. .+. +..-|+.+.-. .  + 
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~--~-  139 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERN--ETMIQ---YAKQNLATYHFENQVR-IIEGNALEQFENV--N-  139 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECC--HHHHH---HHHHHHHHTTCTTTEE-EEESCGGGCHHHH--T-
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEE-EEECCHHHHHHhh--c-
Confidence            4678999999999999999998543 4567665554  22222   355555443211 233 34457765321 1  1 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ...||.|+.+.+...                 +..||+.+..+|+|+|.|.+
T Consensus       140 ~~~fD~V~~~~~~~~-----------------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          140 DKVYDMIFIDAAKAQ-----------------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             TSCEEEEEEETTSSS-----------------HHHHHHHHGGGEEEEEEEEE
T ss_pred             cCCccEEEEcCcHHH-----------------HHHHHHHHHHhcCCCeEEEE
Confidence            478999998854221                 34689999999999999877

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=93.41  E-value=0.1  Score=47.41  Aligned_cols=101  Identities=14%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++.   +.++++.-.+  +++.+.   +..+..     +  ++...|+.++.    +....
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s--~~~l~~---a~~~~~-----~--~~~~~d~~~~~----~~~~~  114 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPS--KEMLEV---AREKGV-----K--NVVEAKAEDLP----FPSGA  114 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHHHHH---HHHHTC-----S--CEEECCTTSCC----SCTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCC--HHHHHH---HHhhcC-----C--CEEECcHHHCC----CCCCC
Confidence            5679999999999999999876   2366665443  222221   222211     2  25666887764    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ||.|+.+++-...  .+        +   ...+++.+..+|+|+|.+.++..+
T Consensus       115 fD~v~~~~~~~~~--~~--------~---~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          115 FEAVLALGDVLSY--VE--------N---KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             EEEEEECSSHHHH--CS--------C---HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEEcchhhhc--cc--------c---HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9999987542110  00        1   467889999999999999998765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=93.30  E-value=0.48  Score=45.78  Aligned_cols=107  Identities=12%  Similarity=0.112  Sum_probs=67.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~L  112 (421)
                      ....+||=||=|.=.++..|++.+.   ++-.|.+|. .++.+   .+..++   ++.|.   .-+..-|+.+...  .+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~---~~~~~~~~v~~~~~d~~~~~~--~~  245 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK---EVEVTIVDL-PQQLE---MMRKQT---AGLSGSERIHGHGANLLDRDV--PF  245 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST---TCEEEEEEC-HHHHH---HHHHHH---TTCTTGGGEEEEECCCCSSSC--CC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeC-HHHHH---HHHHHH---HhcCcccceEEEEccccccCC--CC
Confidence            4567999999999999999999873   345667776 44443   244443   33342   2233446654320  12


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      . ..||.|+.++-.--.   .         ..-...+++.+...|+|+|.|.|.-
T Consensus       246 p-~~~D~v~~~~vlh~~---~---------~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          246 P-TGFDAVWMSQFLDCF---S---------EEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             C-CCCSEEEEESCSTTS---C---------HHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             C-CCcCEEEEechhhhC---C---------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            2 679999997643222   0         1123467888999999999988753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=93.30  E-value=0.06  Score=49.48  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~L  112 (421)
                      ...+..+||=||=|.=..++.||+.++.+..|++.-.+..     ....++.|++.+.-. .+++ ..-||.++-....-
T Consensus        57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~-----~~~~a~~~~~~~g~~~~i~~-~~gda~~~l~~~~~  130 (242)
T 3r3h_A           57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEG-----WTKHAHPYWREAKQEHKIKL-RLGPALDTLHSLLN  130 (242)
T ss_dssp             HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCS-----SCCCSHHHHHHTTCTTTEEE-EESCHHHHHHHHHH
T ss_pred             hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHH-----HHHHHHHHHHHcCCCCcEEE-EEcCHHHHHHHHhh
Confidence            3445689999999999999999998764567877766542     123355565543222 2333 33466553211100


Q ss_pred             --ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 --SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 --k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                        ....||.|+.+.++..                 ...||+.+..+|+|||.|.+.
T Consensus       131 ~~~~~~fD~V~~d~~~~~-----------------~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          131 EGGEHQFDFIFIDADKTN-----------------YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             HHCSSCEEEEEEESCGGG-----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEeEEEEcCChHH-----------------hHHHHHHHHHhcCCCeEEEEE
Confidence              0368999999876211                 234788899999999998883

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=93.26  E-value=0.14  Score=46.13  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ....+||=||=|.=.++..|++.++.+..|++.-.+  ++..+   .++.|++...-. .+.++ .-|+...-.......
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~~g~~~~i~~~-~~d~~~~l~~l~~~~  144 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQD--PNATA---IAKKYWQKAGVAEKISLR-LGPALATLEQLTQGK  144 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHH---HHHHHHHHHTCGGGEEEE-ESCHHHHHHHHHTSS
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCcEEEE-EcCHHHHHHHHHhcC
Confidence            456799999999999999999987544566665444  22222   245555443211 23333 345543211111112


Q ss_pred             --CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 --RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 --~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                        ..||.|+.+.+.      ++           ...+|..+..+|+|+|.|.+.
T Consensus       145 ~~~~fD~V~~d~~~------~~-----------~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          145 PLPEFDLIFIDADK------RN-----------YPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             SCCCEEEEEECSCG------GG-----------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCcCEEEECCCH------HH-----------HHHHHHHHHHHcCCCeEEEEe
Confidence              679999988651      11           246888899999999999884

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=93.22  E-value=0.26  Score=42.73  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|    + ..++++.-.+  +++.+   .+..++     .++.++. .|+.++.    +....
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s--~~~~~---~a~~~~-----~~~~~~~-~d~~~~~----~~~~~   95 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPS--EAMLA---VGRRRA-----PEATWVR-AWGEALP----FPGES   95 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCC--HHHHH---HHHHHC-----TTSEEEC-CCTTSCC----SCSSC
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCC--HHHHH---HHHHhC-----CCcEEEE-cccccCC----CCCCc
Confidence            5679999999988888777    2 2256665443  22222   122222     3565544 4777653    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ||.|+.++..--.   ++           ...+++.+..+|+|+|.+.|+....
T Consensus        96 fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           96 FDVVLLFTTLEFV---ED-----------VERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEEEEESCTTTC---SC-----------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEEEEcChhhhc---CC-----------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence            9999998653322   11           2478888999999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=93.12  E-value=0.28  Score=44.82  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHh---hCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQK---FGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~---~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +..+||=||=|.=..+..||+.   .+.+..|+|.-.+..-  .+   .++    .+ ..+++++.+ |+.++..-..+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~--l~---~a~----~~-~~~v~~~~g-D~~~~~~l~~~~  149 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR--CQ---IPA----SD-MENITLHQG-DCSDLTTFEHLR  149 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT--CC---CCG----GG-CTTEEEEEC-CSSCSGGGGGGS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH--HH---HHh----cc-CCceEEEEC-cchhHHHHHhhc
Confidence            4579999999999999999987   4445678877665421  11   111    11 235777666 888752111223


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHh-ccCCCCeEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASG-MLRPRGEVHVSH  167 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~-lL~~~GeIHVTL  167 (421)
                      ...||.|+.+..|..                 +..+|..+.. +|+++|.+.+.-
T Consensus       150 ~~~fD~I~~d~~~~~-----------------~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          150 EMAHPLIFIDNAHAN-----------------TFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSCSSEEEEESSCSS-----------------HHHHHHHHHHHTCCTTCEEEECS
T ss_pred             cCCCCEEEECCchHh-----------------HHHHHHHHHHhhCCCCCEEEEEe
Confidence            347999999887621                 2357777885 999999999864

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=93.10  E-value=0.17  Score=44.33  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=86.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCcccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~~~~Lk  113 (421)
                      .++.+||=||=|.=.++..|++.+ .+.++++.-.+. +.+..--..+..   .++..|  -..+...|+.++..    .
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~-~~l~~~~~~a~~---~~~~~~~~~v~~~~~d~~~l~~----~   96 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADK-SRMEKISAKAAA---KPAKGGLPNLLYLWATAERLPP----L   96 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCG-GGGHHHHHHHTS---CGGGTCCTTEEEEECCSTTCCS----C
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCH-HHHHHHHHHHHH---hhhhcCCCceEEEecchhhCCC----C
Confidence            456799999999999999999875 345677665543 211110001111   122233  22344568887653    2


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHH---HHHHHhhHhccCCCCeEEEEecCCC-----------C--cCcc-
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLV---EGFFRNASGMLRPRGEVHVSHKTTA-----------P--FCKW-  176 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL---~~FF~SA~~lL~~~GeIHVTLk~g~-----------P--Y~sW-  176 (421)
                      ... |.|+..+|...            .++..+   ..+++.+..+|+|+|.+.++.....           |  ...| 
T Consensus        97 ~~~-d~v~~~~~~~~------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (218)
T 3mq2_A           97 SGV-GELHVLMPWGS------------LLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSA  163 (218)
T ss_dssp             CCE-EEEEEESCCHH------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHH
T ss_pred             CCC-CEEEEEccchh------------hhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHH
Confidence            344 88887777432            122233   6788999999999999999864321           1  0111 


Q ss_pred             --cHHHHHHhCCcEEEEEeeCCCC
Q 014642          177 --HIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       177 --nI~~LAa~aGL~L~~~~~F~~~  198 (421)
                        .+..+.+++|+.+.+...++.+
T Consensus       164 ~~~l~~~l~~aGf~i~~~~~~~~~  187 (218)
T 3mq2_A          164 DEWLAPRYAEAGWKLADCRYLEPE  187 (218)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEECHH
T ss_pred             HHHHHHHHHHcCCCceeeeccchh
Confidence              2666888999999998777654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.94  E-value=0.46  Score=42.49  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||-||=|.=.++..|++..+  .++++.-.+  +++.+   .++.|+..+.-.++.+ ...|+ ... .  ...
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~~-~~~d~-~~~-~--~~~  156 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERI--PELVE---FAKRNLERAGVKNVHV-ILGDG-SKG-F--PPK  156 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESC--HHHHH---HHHHHHHHTTCCSEEE-EESCG-GGC-C--GGG
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCC--HHHHH---HHHHHHHHcCCCCcEE-EECCc-ccC-C--CCC
Confidence            35677999999999999999999875  467766544  22222   2555554432223333 33455 111 1  123


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ..||.||.+.+....                    ...+..+|+++|.+.|+..++.
T Consensus       157 ~~fD~Ii~~~~~~~~--------------------~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          157 APYDVIIVTAGAPKI--------------------PEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             CCEEEEEECSBBSSC--------------------CHHHHHTEEEEEEEEEEECSSS
T ss_pred             CCccEEEECCcHHHH--------------------HHHHHHhcCCCcEEEEEEecCC
Confidence            469999998764432                    0145679999999999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=92.92  E-value=0.22  Score=47.70  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=||=|.=.+|..|+++ | ...++|.-.+.   +.+   .++.+++...-.+ +++ ..-|+.++.    +..
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s~---~~~---~a~~~~~~~~~~~~i~~-~~~d~~~~~----~~~  103 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS---IIE---MAKELVELNGFSDKITL-LRGKLEDVH----LPF  103 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST---HHH---HHHHHHHHTTCTTTEEE-EESCTTTSC----CSS
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChHH---HHH---HHHHHHHHcCCCCCEEE-EECchhhcc----CCC
Confidence            45679999999998899988886 3 45788877752   222   2445544322112 344 445776653    334


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      .+||.||.+.+..+...           ...+..++..+..+|+|+|.+.
T Consensus       104 ~~~D~Ivs~~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          104 PKVDIIISEWMGYFLLY-----------ESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCEEEEEECCCBTTBST-----------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CcccEEEEeCchhhccc-----------HHHHHHHHHHHHhhcCCCeEEE
Confidence            78999999977443211           1224567788889999999986

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=92.89  E-value=0.14  Score=46.66  Aligned_cols=108  Identities=11%  Similarity=0.022  Sum_probs=68.9

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHS  110 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~  110 (421)
                      ...+..+||=||=|.=..++.||++++.+..|++.-.+  ++..+   -++.|++.   .|.   .-+..-||.+.-...
T Consensus        67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~---~a~~~~~~---~g~~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFD--REAYE---IGLPFIRK---AGVEHKINFIESDAMLALDNL  138 (237)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESC--HHHHH---HHHHHHHH---TTCGGGEEEEESCHHHHHHHH
T ss_pred             HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHH---HHHHHHHH---cCCCCcEEEEEcCHHHHHHHH
Confidence            34566799999999999999999987545567766554  22222   35555543   342   223334665432111


Q ss_pred             cc---ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          111 EL---SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       111 ~L---k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      .-   ....||.|+.+.++.                 ....||+.+..+|+|||.|.+.
T Consensus       139 ~~~~~~~~~fD~I~~d~~~~-----------------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDADKP-----------------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             HHSTTCTTCEEEEEECSCGG-----------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhccCCCCCcCEEEECCchH-----------------HHHHHHHHHHHhcCCCeEEEEe
Confidence            00   146899999874321                 1257889999999999998874

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=92.87  E-value=0.37  Score=40.86  Aligned_cols=111  Identities=12%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||.||.|.                   ...|.-+++.+.   +++++   .. .+.+ ...|++++... .+...
T Consensus        11 ~~g~~vL~~~~g~-------------------v~vD~s~~ml~~---a~~~~---~~-~~~~-~~~d~~~~~~~-~~~~~   62 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-------------------SPVEALKGLVDK---LQALT---GN-EGRV-SVENIKQLLQS-AHKES   62 (176)
T ss_dssp             CTTSEEEEEECTT-------------------SCHHHHHHHHHH---HHHHT---TT-TSEE-EEEEGGGGGGG-CCCSS
T ss_pred             CCCCEEEEecCCc-------------------eeeeCCHHHHHH---HHHhc---cc-CcEE-EEechhcCccc-cCCCC
Confidence            4678999999985                   124433333321   22221   11 3544 34577776421 12457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC----CcCcc---cHHHHHHhCCc
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA----PFCKW---HIEELARKHSL  187 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~----PY~sW---nI~~LAa~aGL  187 (421)
                      .||.|+.++-..-.  .++           +..+++.+..+|+|+|.+.+......    +...+   .+..+.+++||
T Consensus        63 ~fD~V~~~~~l~~~--~~~-----------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           63 SFDIILSGLVPGST--TLH-----------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CEEEEEECCSTTCC--CCC-----------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CEeEEEECChhhhc--ccC-----------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            89999987632211  011           14688889999999999999654221    11122   35567788999

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=92.87  E-value=0.49  Score=40.55  Aligned_cols=125  Identities=10%  Similarity=0.063  Sum_probs=75.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.++..|++..    +++|.-.+  +++.+.            ..++.++ .-|+.+     .+....
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s--~~~~~~------------~~~~~~~-~~d~~~-----~~~~~~   78 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLN--IRALES------------HRGGNLV-RADLLC-----SINQES   78 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS----EEEEEESC--HHHHHT------------CSSSCEE-ECSTTT-----TBCGGG
T ss_pred             CCCeEEEeccCccHHHHHHHhcC----cEEEEECC--HHHHhc------------ccCCeEE-ECChhh-----hcccCC
Confidence            35699999999999999998764    56665544  222222            2345443 345544     123478


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ||.|+.|.|..-....+. ...-.....++..+++.+     |+|.+.+.....  ...-.+.++.+++|+......
T Consensus        79 fD~i~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l-----pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           79 VDVVVFNPPYVPDTDDPI-IGGGYLGREVIDRFVDAV-----TVGMLYLLVIEA--NRPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             CSEEEECCCCBTTCCCTT-TBCCGGGCHHHHHHHHHC-----CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEECCCCccCCcccc-ccCCcchHHHHHHHHhhC-----CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEEE
Confidence            999999999764211100 000001234555555544     999998876432  234567778889999877654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=92.85  E-value=0.54  Score=41.00  Aligned_cols=110  Identities=11%  Similarity=0.092  Sum_probs=67.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH-----HhCCCEEEeecccCCcCccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL-----KKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L-----r~~Gv~VlhgVDATkL~~~~  110 (421)
                      .+..+||=||=|.=.++..|++..+ ..++++.-.+  +++.+   .+++++...     ...++.++ .-|+..+.   
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~~~~~v~~~-~~d~~~~~---   97 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVS--YSVLE---RAKDRLKIDRLPEMQRKRISLF-QSSLVYRD---   97 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESC--HHHHH---HHHHHHTGGGSCHHHHTTEEEE-ECCSSSCC---
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECC--HHHHH---HHHHHHHhhccccccCcceEEE-eCcccccc---
Confidence            3567999999999999999998653 3567666554  22222   233333211     11144444 34664432   


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                       .....||.|+.+...--.            ...-+..+++.+..+|+|+|.+.++..
T Consensus        98 -~~~~~fD~V~~~~~l~~~------------~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           98 -KRFSGYDAATVIEVIEHL------------DENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             -GGGTTCSEEEEESCGGGC------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             -cccCCCCEEEEHHHHHhC------------CHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence             335789999987543221            112256789999999999996666544

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=92.84  E-value=1.9  Score=38.66  Aligned_cols=150  Identities=11%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCC-cCcccccc-
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATE-MKEHSELS-  113 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATk-L~~~~~Lk-  113 (421)
                      +..+||=+|=|.=.++..|++... +..++|.-.+  +++.+   .|+.|++...-.+ +.++ .-|+.+ +.....-. 
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s--~~~~~---~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~  137 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVD--DMCFN---YAKKNVEQNNLSDLIKVV-KVPQKTLLMDALKEES  137 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESC--HHHHH---HHHHHHHHTTCTTTEEEE-ECCTTCSSTTTSTTCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECC--HHHHH---HHHHHHHHcCCCccEEEE-Ecchhhhhhhhhhccc
Confidence            466999999998888888887753 3466666554  22322   3566665432212 4444 447766 22221111 


Q ss_pred             cCcccEEEEcCCCCCCCCC-cc-cHHHHHH---h----------------HHHHHHHHHhhHhccCCCCeEEEEecCCCC
Q 014642          114 KRKFDRIIFNFPHAGFHGK-EE-DDEVIRM---H----------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAP  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~Gk-Ed-~~~~I~~---n----------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~P  172 (421)
                      ...||.||.|-|....... .. ..+.+..   .                -.++..++..+..+|+++|.++..+-..  
T Consensus       138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~--  215 (254)
T 2h00_A          138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKK--  215 (254)
T ss_dssp             SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESST--
T ss_pred             CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCCh--
Confidence            2589999999887653100 00 0001110   0                1223344444556677778776554322  


Q ss_pred             cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      ...=.+.++.+++|+.-++...+
T Consensus       216 ~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          216 CSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCCceEEEEE
Confidence            11124667888899877666544

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=92.82  E-value=0.75  Score=40.53  Aligned_cols=135  Identities=11%  Similarity=0.037  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH------------HhCCCEEEeeccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL------------KKLGASIIHGVDA  103 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L------------r~~Gv~VlhgVDA  103 (421)
                      .+..+||-||=|.=-++..||+. |  ..|+|.-+ |++.+ +.   +..+....            ...+++++ .-|+
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~-S~~~l-~~---a~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~d~   91 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAEL-SEAAV-ER---YFTERGEQPHITSQGDFKVYAAPGIEIW-CGDF   91 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEE-CHHHH-HH---HHHHHCSCSEEEEETTEEEEECSSSEEE-EECC
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeC-CHHHH-HH---HHHHccCCcccccccccccccCCccEEE-ECcc
Confidence            35679999999999999999986 3  35555433 33333 22   32221100            01245444 3477


Q ss_pred             CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEecC------CCCcCcc
Q 014642          104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHKT------TAPFCKW  176 (421)
Q Consensus       104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~------g~PY~sW  176 (421)
                      .++...   ....||.|+.++-..-.            +......+++.+..+|+|+|. +.+++.-      +.|+. +
T Consensus        92 ~~l~~~---~~~~fD~v~~~~~l~~l------------~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~-~  155 (203)
T 1pjz_A           92 FALTAR---DIGHCAAFYDRAAMIAL------------PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFS-V  155 (203)
T ss_dssp             SSSTHH---HHHSEEEEEEESCGGGS------------CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCC-C
T ss_pred             ccCCcc---cCCCEEEEEECcchhhC------------CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCC-C
Confidence            776421   12679999976533221            122345788999999999998 5555432      23332 3


Q ss_pred             cHHHH---HHhCCcEEEEEeeCC
Q 014642          177 HIEEL---ARKHSLLRLDCVQFR  196 (421)
Q Consensus       177 nI~~L---Aa~aGL~L~~~~~F~  196 (421)
                      ..+++   .+. |+.+......+
T Consensus       156 ~~~el~~~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A          156 PQTWLHRVMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             CHHHHHHTSCS-SEEEEEEEESS
T ss_pred             CHHHHHHHhcC-CcEEEEecccc
Confidence            33443   333 78776655544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=92.78  E-value=0.52  Score=40.85  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..+..+||=||=|.=.++..|++.   +.++++.-.+  +++.+   .++.|+..+.-.++. +..-|+.+...    ..
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~--~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~~----~~  141 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERI--KGLQW---QARRRLKNLDLHNVS-TRHGDGWQGWQ----AR  141 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESC--HHHHH---HHHHHHHHTTCCSEE-EEESCGGGCCG----GG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecC--HHHHH---HHHHHHHHcCCCceE-EEECCcccCCc----cC
Confidence            356789999999999999999987   3567776555  33332   255555443222233 33446655321    24


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ..||.|+.+.+.....                    ..+..+|+|+|.+.+++.++
T Consensus       142 ~~~D~i~~~~~~~~~~--------------------~~~~~~L~pgG~lv~~~~~~  177 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIP--------------------TALMTQLDEGGILVLPVGEE  177 (210)
T ss_dssp             CCEEEEEESSBCSSCC--------------------THHHHTEEEEEEEEEEECSS
T ss_pred             CCccEEEEccchhhhh--------------------HHHHHhcccCcEEEEEEcCC
Confidence            7899999974332210                    03567999999999999873

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=92.77  E-value=0.28  Score=43.58  Aligned_cols=107  Identities=14%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ...+..+||=||=|.=.++..|++.   +.+++++-.+  .++.+   .+..++ .-...++.+ ...|+.++.    +.
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~~-~~~~~~~~~-~~~d~~~~~----~~  101 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDAD--AAMLE---VFRQKI-AGVDRKVQV-VQADARAIP----LP  101 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESC--HHHHH---HHHHHT-TTSCTTEEE-EESCTTSCC----SC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECC--HHHHH---HHHHHh-hccCCceEE-EEcccccCC----CC
Confidence            3456789999999999999999876   2467666544  22222   133333 000113333 445776653    34


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ...||.|+.++..--.   .+           ...+++.+..+|+|+|.+.++..
T Consensus       102 ~~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~  142 (263)
T 2yqz_A          102 DESVHGVIVVHLWHLV---PD-----------WPKVLAEAIRVLKPGGALLEGWD  142 (263)
T ss_dssp             TTCEEEEEEESCGGGC---TT-----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchhhc---CC-----------HHHHHHHHHHHCCCCcEEEEEec
Confidence            5789999998653322   11           24678888999999999998843

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=92.70  E-value=0.95  Score=41.05  Aligned_cols=125  Identities=17%  Similarity=0.226  Sum_probs=79.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+..+||=||=|.=.++..|++.   +.+++++-+..  .+.+          ..++. ++.+ ..-|++++.    +..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~--~~~~----------~a~~~~~~~~-~~~d~~~~~----~~~   92 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSI--VMRQ----------QAVVHPQVEW-FTGYAENLA----LPD   92 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCH--HHHH----------SSCCCTTEEE-ECCCTTSCC----SCT
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCH--HHHH----------HHHhccCCEE-EECchhhCC----CCC
Confidence            56789999999999999999972   35677665542  2222          11111 3433 345776653    345


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCcc-----------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCKW-----------------  176 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW-----------------  176 (421)
                      +.||.|+.++..--.   ++           ...+++.+..+|+ +|.+.|.-..... ...|                 
T Consensus        93 ~~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
T 3ege_A           93 KSVDGVISILAIHHF---SH-----------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP  157 (261)
T ss_dssp             TCBSEEEEESCGGGC---SS-----------HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCC
T ss_pred             CCEeEEEEcchHhhc---cC-----------HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCC
Confidence            789999998753221   11           2478888999999 9977666544211 1222                 


Q ss_pred             ---cHHHHHHhCCcEEEEEeeCC
Q 014642          177 ---HIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       177 ---nI~~LAa~aGL~L~~~~~F~  196 (421)
                         .+. +.+++||..++...+.
T Consensus       158 ~~~~~~-~l~~aGF~~v~~~~~~  179 (261)
T 3ege_A          158 LDEQIN-LLQENTKRRVEAIPFL  179 (261)
T ss_dssp             HHHHHH-HHHHHHCSEEEEEECC
T ss_pred             CHHHHH-HHHHcCCCceeEEEec
Confidence               244 7888899887776664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=92.61  E-value=0.11  Score=50.67  Aligned_cols=114  Identities=15%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +-++||+||=||-+-++.++++. +...|+.--+|.. -++.++|= ..-|-..+..-.++|+++ ||.+.-..   ..+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~l-p~~~~~~~~dpRv~v~~~-Dg~~~l~~---~~~  156 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYL-PNHNAGSYDDPRFKLVID-DGVNFVNQ---TSQ  156 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHC-HHHHTTGGGCTTEEEEES-CTTTTTSC---SSC
T ss_pred             CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcC-ccccccccCCCcEEEEec-hHHHHHhh---ccc
Confidence            35699999999999999999875 3557888888732 23334441 111222344556777765 66654332   347


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      +||.||-+-+.....+.          ...-..||+.|+..|+|+|-+.+-
T Consensus       157 ~yDvIi~D~~dp~~~~~----------~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          157 TFDVIISDCTDPIGPGE----------SLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CEEEEEESCCCCCCTTC----------CSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             cCCEEEEeCCCcCCCch----------hhcCHHHHHHHHHHhCCCCEEEEe
Confidence            89999999887543221          112358999999999999887654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=92.32  E-value=0.49  Score=44.66  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=73.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ...+||=+|=|.=.++.+|++.  ...+++|+-.+ .+.+ +   -++.|++.+.-.+ +. ++.-|+.+.     +. .
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis-~~al-~---~A~~n~~~~~l~~~v~-~~~~D~~~~-----~~-~  188 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVS-SKAV-E---IARKNAERHGVSDRFF-VRKGEFLEP-----FK-E  188 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESC-HHHH-H---HHHHHHHHTTCTTSEE-EEESSTTGG-----GG-G
T ss_pred             CCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECC-HHHH-H---HHHHHHHHcCCCCceE-EEECcchhh-----cc-c
Confidence            4569999999999999999988  35578776554 3333 2   3666766543222 33 344466552     11 3


Q ss_pred             cc---cEEEEcCCCCCCCCCcccHHHHH--HhHHHH-----HHHHHhhH-hccCCCCeEEEEecC
Q 014642          116 KF---DRIIFNFPHAGFHGKEEDDEVIR--MHMSLV-----EGFFRNAS-GMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~F---DrIIFNFPH~G~~GkEd~~~~I~--~nr~LL-----~~FF~SA~-~lL~~~GeIHVTLk~  169 (421)
                      +|   |.||.|-|..+...  .....++  -+..|.     ..|++.+. ..|+++|.+.+.+-.
T Consensus       189 ~f~~~D~IvsnPPyi~~~~--~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~  251 (284)
T 1nv8_A          189 KFASIEMILSNPPYVKSSA--HLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE  251 (284)
T ss_dssp             GTTTCCEEEECCCCBCGGG--SCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred             ccCCCCEEEEcCCCCCccc--ccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence            68   99999999887411  0000111  011111     26888888 999999999987644

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=92.31  E-value=0.52  Score=45.52  Aligned_cols=107  Identities=21%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ++.+||=||=|.=.++..++++ + ...|+|.-...  .+ +   .++.+++...- ..+++ ..-|+.++.    + ..
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~--~~-~---~a~~~~~~~~l~~~v~~-~~~d~~~~~----~-~~  115 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST--MA-Q---HAEVLVKSNNLTDRIVV-IPGKVEEVS----L-PE  115 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST--HH-H---HHHHHHHHTTCTTTEEE-EESCTTTCC----C-SS
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH--HH-H---HHHHHHHHcCCCCcEEE-EEcchhhCC----C-CC
Confidence            5679999999999999999886 3 45788877752  22 2   24445443221 12444 445776653    2 25


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      +||.||.+.+.... ..++           +..+|..+..+|+|+|.+.++..+
T Consensus       116 ~~D~Ivs~~~~~~~-~~~~-----------~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          116 QVDIIISEPMGYML-FNER-----------MLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             CEEEEEECCCBTTB-TTTS-----------HHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             ceeEEEEeCchhcC-ChHH-----------HHHHHHHHHhhcCCCeEEEEecCc
Confidence            79999999763321 1111           345566788999999998765433

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=92.28  E-value=0.96  Score=41.99  Aligned_cols=134  Identities=12%  Similarity=0.038  Sum_probs=75.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHH---------HH--------HhCCCEEEe
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLD---------TL--------KKLGASIIH   99 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~---------~L--------r~~Gv~Vlh   99 (421)
                      +..+||-||=|+=-++..||+.   +..|||  .|--+++.+.   |.....         ..        ...++.+ .
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~g--vD~S~~~i~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~  138 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR---GHTVVG--VEISEIGIRE---FFAEQNLSYTEEPLAEIAGAKVFKSSSGSISL-Y  138 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT---TCEEEE--ECSCHHHHHH---HHHHTTCCEEEEECTTSTTCEEEEETTSSEEE-E
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC---CCeEEE--EECCHHHHHH---HHHhcccccccccccccccccccccCCCceEE-E
Confidence            5679999999999999999976   335555  4532333332   211110         00        0122333 3


Q ss_pred             ecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE-EEecC------CCC
Q 014642          100 GVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH-VSHKT------TAP  172 (421)
Q Consensus       100 gVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH-VTLk~------g~P  172 (421)
                      .-|+.++...   ....||.|+.+.-....            +......+++.+..+|+|||.+. +|+.-      |.|
T Consensus       139 ~~D~~~l~~~---~~~~FD~V~~~~~l~~l------------~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~  203 (252)
T 2gb4_A          139 CCSIFDLPRA---NIGKFDRIWDRGALVAI------------NPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPP  203 (252)
T ss_dssp             ESCTTTGGGG---CCCCEEEEEESSSTTTS------------CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSS
T ss_pred             ECccccCCcc---cCCCEEEEEEhhhhhhC------------CHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCC
Confidence            4477776431   12689999976543332            11123578899999999999985 66642      333


Q ss_pred             cCcccHHHHHHh--CCcEEEEEeeC
Q 014642          173 FCKWHIEELARK--HSLLRLDCVQF  195 (421)
Q Consensus       173 Y~sWnI~~LAa~--aGL~L~~~~~F  195 (421)
                      +. +..+++.+.  .+|.+.....+
T Consensus       204 ~~-~~~~el~~~l~~~f~v~~~~~~  227 (252)
T 2gb4_A          204 FY-VPSAELKRLFGTKCSMQCLEEV  227 (252)
T ss_dssp             CC-CCHHHHHHHHTTTEEEEEEEEE
T ss_pred             CC-CCHHHHHHHhhCCeEEEEEecc
Confidence            32 443433322  24777665433

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=92.21  E-value=0.78  Score=42.78  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-----C--CCEEEeecccCCcCcc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-----L--GASIIHGVDATEMKEH  109 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-----~--Gv~VlhgVDATkL~~~  109 (421)
                      +..+||=||=|.=.++..|++.  ....++++-.+ .+ +.+   .+..++.....     .  .+ -+...|+..+...
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s-~~-~l~---~a~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~  105 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIA-DV-SVK---QCQQRYEDMKNRRDSEYIFSA-EFITADSSKELLI  105 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESC-HH-HHH---HHHHHHHHHHSSSCC-CCCEE-EEEECCTTTSCST
T ss_pred             CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCC-HH-HHH---HHHHHHHHhhhcccccccceE-EEEEecccccchh
Confidence            5679999999988888888874  24567776544 22 222   24444444321     1  22 3345677776422


Q ss_pred             ccc--ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          110 SEL--SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       110 ~~L--k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ..+  ....||.|+.++-.--.          -.+..-+..+|+.+..+|+|+|.+.++..+.
T Consensus       106 ~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          106 DKFRDPQMCFDICSCQFVCHYS----------FESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTCSSTTCCEEEEEEETCGGGG----------GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             hhcccCCCCEEEEEEecchhhc----------cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            123  23589999998742110          0122335689999999999999999987664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=91.97  E-value=0.74  Score=40.87  Aligned_cols=103  Identities=15%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||=||=|.=.++..|++.+. +.+++++-.+.  .+.+   .+..+     ..++.++ ..|+.++.     ...
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~--~~~~---~a~~~-----~~~~~~~-~~d~~~~~-----~~~   94 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDD--DMLE---KAADR-----LPNTNFG-KADLATWK-----PAQ   94 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCH--HHHH---HHHHH-----STTSEEE-ECCTTTCC-----CSS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCH--HHHH---HHHHh-----CCCcEEE-ECChhhcC-----ccC
Confidence            4567999999999999999998873 45777775542  2222   12222     1245443 45777764     246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.++..--.   .+           ...+++.+..+|+|+|.+.++...
T Consensus        95 ~fD~v~~~~~l~~~---~~-----------~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           95 KADLLYANAVFQWV---PD-----------HLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             CEEEEEEESCGGGS---TT-----------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             CcCEEEEeCchhhC---CC-----------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence            89999998753322   11           246888899999999999998754

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=91.89  E-value=0.66  Score=40.09  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ...+||=+|=|.=.|+..|++. + ...+++.-.+.  ++.+   .++.|+.     ++.++. -|+.++.       ..
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~--~~~~---~a~~~~~-----~~~~~~-~d~~~~~-------~~  110 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDP--DAIE---TAKRNCG-----GVNFMV-ADVSEIS-------GK  110 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCH--HHHH---HHHHHCT-----TSEEEE-CCGGGCC-------CC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCH--HHHH---HHHHhcC-----CCEEEE-CcHHHCC-------CC
Confidence            4679999999999999999876 3 33576665542  2222   2444443     565544 4776652       57


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      ||.||.|-|..-...            .....|++.+..+|   |.|.+....   .....+.+++...| .+...
T Consensus       111 ~D~v~~~~p~~~~~~------------~~~~~~l~~~~~~~---g~~~~~~~~---~~~~~~~~~~~~~g-~~~~~  167 (200)
T 1ne2_A          111 YDTWIMNPPFGSVVK------------HSDRAFIDKAFETS---MWIYSIGNA---KARDFLRREFSARG-DVFRE  167 (200)
T ss_dssp             EEEEEECCCC-------------------CHHHHHHHHHHE---EEEEEEEEG---GGHHHHHHHHHHHE-EEEEE
T ss_pred             eeEEEECCCchhccC------------chhHHHHHHHHHhc---CcEEEEEcC---chHHHHHHHHHHCC-CEEEE
Confidence            999999988433210            01135566666666   556666532   22223556667777 54433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=91.74  E-value=0.086  Score=47.18  Aligned_cols=109  Identities=16%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~  114 (421)
                      ....+||=||=|.=.++..|++..  ..++++  .|-.+++.+.   ++.+.   +..|..| +..-|+.++..  .+..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~g--vD~s~~~l~~---a~~~~---~~~~~~v~~~~~d~~~~~~--~~~~  126 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWI--IECNDGVFQR---LRDWA---PRQTHKVIPLKGLWEDVAP--TLPD  126 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEE--EECCHHHHHH---HHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEE--EcCCHHHHHH---HHHHH---HhcCCCeEEEecCHHHhhc--ccCC
Confidence            356799999999999999997642  235665  4533333332   33332   3344433 23456666521  2345


Q ss_pred             CcccEEEE-cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIF-NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIF-NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ..||.|+. +|+....          ..+......+++.+..+|+|+|.+.+.
T Consensus       127 ~~fD~V~~d~~~~~~~----------~~~~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          127 GHFDGILYDTYPLSEE----------TWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             TCEEEEEECCCCCBGG----------GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             CceEEEEECCcccchh----------hhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence            78999999 6664110          013445567899999999999998765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=91.46  E-value=0.28  Score=44.38  Aligned_cols=98  Identities=13%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+..+||-||=|.=.++..|++.++ +..+++.-.+  +...+   .+..+.     .++.+ ...|+..+.    +...
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s--~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVS--KVAIK---AAAKRY-----PQVTF-CVASSHRLP----FSDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESC--HHHHH---HHHHHC-----TTSEE-EECCTTSCS----BCTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCC--HHHHH---HHHHhC-----CCcEE-EEcchhhCC----CCCC
Confidence            4577999999999999999998863 4467776543  22222   122221     13433 344776653    3457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .||.|+.++..                     .+++.+..+|+|+|.+.+.....
T Consensus       148 ~fD~v~~~~~~---------------------~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          148 SMDAIIRIYAP---------------------CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             CEEEEEEESCC---------------------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             ceeEEEEeCCh---------------------hhHHHHHHhcCCCcEEEEEEcCH
Confidence            89999987651                     13677888999999998876543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=91.45  E-value=2.4  Score=42.35  Aligned_cols=137  Identities=16%  Similarity=0.153  Sum_probs=80.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ..+.+||=+|=|.=.|++.||+.   +..++|.-.+ .+ ..+   .|+.|++...-.++. ++.-|+.+.-....+...
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s-~~-al~---~A~~n~~~~~~~~v~-f~~~d~~~~l~~~~~~~~  355 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGV-PA-LVE---KGQQNARLNGLQNVT-FYHENLEEDVTKQPWAKN  355 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESC-HH-HHH---HHHHHHHHTTCCSEE-EEECCTTSCCSSSGGGTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCC-HH-HHH---HHHHHHHHcCCCceE-EEECCHHHHhhhhhhhcC
Confidence            34678999999988899999876   3467766554 22 222   366666432211333 344577663322223456


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcc-cHHHHHHhCCcEEEEEee
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKW-HIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sW-nI~~LAa~aGL~L~~~~~  194 (421)
                      .||.||.|-|-.|.   .      ...+.|.         -+++++-|+|+- +  |.... ++. +-.+.|+.+....+
T Consensus       356 ~fD~Vv~dPPr~g~---~------~~~~~l~---------~~~p~~ivyvsc-~--p~tlard~~-~l~~~Gy~~~~~~~  413 (433)
T 1uwv_A          356 GFDKVLLDPARAGA---A------GVMQQII---------KLEPIRIVYVSC-N--PATLARDSE-ALLKAGYTIARLAM  413 (433)
T ss_dssp             CCSEEEECCCTTCC---H------HHHHHHH---------HHCCSEEEEEES-C--HHHHHHHHH-HHHHTTCEEEEEEE
T ss_pred             CCCEEEECCCCccH---H------HHHHHHH---------hcCCCeEEEEEC-C--hHHHHhhHH-HHHHCCcEEEEEEE
Confidence            89999999999984   1      1112222         156666666653 2  22111 222 22457999999999


Q ss_pred             CCCCCCCCCcc
Q 014642          195 FRKEDYPGYSN  205 (421)
Q Consensus       195 F~~~~YPGY~h  205 (421)
                      ||  .||.=.|
T Consensus       414 ~d--~Fp~t~H  422 (433)
T 1uwv_A          414 LD--MFPHTGH  422 (433)
T ss_dssp             EC--CSTTSSC
T ss_pred             ec--cCCCCCe
Confidence            87  5774433

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=91.04  E-value=0.53  Score=41.78  Aligned_cols=111  Identities=12%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +..++.+||=||=|.=.++..|++...   ++++.-.+  +.+.+.   +..++   ...++.+ ...|+.++.....+.
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s--~~~~~~---a~~~~---~~~~~~~-~~~d~~~~~~~~~~~  120 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVS--KSALEI---AAKEN---TAANISY-RLLDGLVPEQAAQIH  120 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESC--HHHHHH---HHHHS---CCTTEEE-EECCTTCHHHHHHHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECC--HHHHHH---HHHhC---cccCceE-EECcccccccccccc
Confidence            345678999999999999999998753   67776544  222221   22222   1223443 345777764332221


Q ss_pred             -cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          114 -KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       114 -~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                       ...||.|+.+.-+.-. ..+           -...+++.+..+|+|+|.+.|.-.
T Consensus       121 ~~~~~d~v~~~~~~~~~-~~~-----------~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          121 SEIGDANIYMRTGFHHI-PVE-----------KRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHHCSCEEEEESSSTTS-CGG-----------GHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cccCccEEEEcchhhcC-CHH-----------HHHHHHHHHHHHcCCCCEEEEEeC
Confidence             2359999998654432 111           135788888999999999776654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=90.95  E-value=0.74  Score=40.48  Aligned_cols=100  Identities=13%  Similarity=0.149  Sum_probs=64.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..+..+||=||=|.=.++..|++..   .++++.-.+  +++.+   .+..++   +.. ++.++ ..|+.+..    ..
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~--~~~~~---~a~~~~---~~~~~v~~~-~~d~~~~~----~~  131 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEIN--EKMYN---YASKLL---SYYNNIKLI-LGDGTLGY----EE  131 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESC--HHHHH---HHHHHH---TTCSSEEEE-ESCGGGCC----GG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCC--HHHHH---HHHHHH---hhcCCeEEE-ECCccccc----cc
Confidence            3567799999999999999999874   467776554  22222   233333   333 34443 34665521    12


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ...||.|+.+.+.-..   .                 ..+..+|+++|.+.++..+.
T Consensus       132 ~~~fD~v~~~~~~~~~---~-----------------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTL---L-----------------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GCCEEEEEESSBBSSC---C-----------------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCCccEEEECCcHHHH---H-----------------HHHHHHcCCCcEEEEEEcCC
Confidence            4689999999764332   0                 13667999999999997654

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=90.74  E-value=0.11  Score=52.81  Aligned_cols=119  Identities=15%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhh-hhH-HHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKF-KEA-RSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY-~~a-~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++||++|=||-+-++.++++.  ...|++--+|.. -++.++| |.. ....+..+.-.++|+++ ||-+--+...-..
T Consensus       206 pkrVLIIGgGdG~~~revlkh~--~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~-Da~~fl~~~~~~~  282 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKLK--PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLKRYAKEG  282 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTTC--CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES-CHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcHHHHHHHHhcC--CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH-HHHHHHHhhhhcc
Confidence            4699999999999999998853  367877777732 2333444 211 11111122223455543 5543221111134


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHH-hHHHHHHHHHhhHhccCCCCeEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRM-HMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~-nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ++||.||-+.+.....+.     .... ....-..||+.|+..|+++|-+.
T Consensus       283 ~~yDvIIvDl~D~~~s~~-----p~g~a~~Lft~eFy~~~~~~L~p~GVlv  328 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTS-----PEEDSTWEFLRLILDLSMKVLKQDGKYF  328 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC---------CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             CceeEEEECCCCCcccCc-----ccCcchHHHHHHHHHHHHHhcCCCCEEE
Confidence            689999999776432110     0112 23446799999999999998653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=90.65  E-value=0.9  Score=40.30  Aligned_cols=118  Identities=13%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccC-CcCcccccc-
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDAT-EMKEHSELS-  113 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDAT-kL~~~~~Lk-  113 (421)
                      .+..+||=||=|.=.++..|++.   +..++++-.+  ..+.+   .+..+     ..++.++ ..|+. .+    .+. 
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s--~~~~~---~a~~~-----~~~~~~~-~~d~~~~~----~~~~  108 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFS--PELLK---LARAN-----APHADVY-EWNGKGEL----PAGL  108 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESC--HHHHH---HHHHH-----CTTSEEE-ECCSCSSC----CTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHh-----CCCceEE-Ecchhhcc----CCcC
Confidence            45789999999999999999987   3467776554  22222   12223     2245443 34653 22    233 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...||.|+.|..                    ...+++.+..+|+|+|.+...   +...+.-.+..+.+++|+......
T Consensus       109 ~~~fD~v~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          109 GAPFGLIVSRRG--------------------PTSVILRLPELAAPDAHFLYV---GPRLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             CCCEEEEEEESC--------------------CSGGGGGHHHHEEEEEEEEEE---ESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeCCC--------------------HHHHHHHHHHHcCCCcEEEEe---CCcCCHHHHHHHHHHCCCeEEEEE
Confidence            578999999821                    125677888999999998821   112344467788889999877654


Q ss_pred             e
Q 014642          194 Q  194 (421)
Q Consensus       194 ~  194 (421)
                      .
T Consensus       166 ~  166 (226)
T 3m33_A          166 H  166 (226)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=90.57  E-value=0.73  Score=44.43  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=65.1

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++.+.   ++.++.+|- ..+.+.   +..    +  .+++++. -|+.+ .    +. 
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~~---a~~----~--~~v~~~~-~d~~~-~----~~-  266 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKYP---LIKGINFDL-PQVIEN---APP----L--SGIEHVG-GDMFA-S----VP-  266 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----C--TTEEEEE-CCTTT-C----CC-
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHCC---CCeEEEeCh-HHHHHh---hhh----c--CCCEEEe-CCccc-C----CC-
Confidence            45678999999999999999999863   456677786 444432   111    1  2444443 36654 1    22 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      . ||.|+.++-.--.   .         ..-...+++.+..+|+|+|.+.|.
T Consensus       267 ~-~D~v~~~~~lh~~---~---------d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          267 Q-GDAMILKAVCHNW---S---------DEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             C-EEEEEEESSGGGS---C---------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-CCEEEEecccccC---C---------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence            2 9999998653221   1         111347788899999999998876

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=90.49  E-value=0.81  Score=43.42  Aligned_cols=109  Identities=9%  Similarity=0.087  Sum_probs=66.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~Lk  113 (421)
                      -.++.+||=||=|.=.++..|++.   +..|+|.-.+  +.+.+   .+++|+..   .    ...+|+.++... ....
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S--~~ml~---~Ar~~~~~---~----~v~~~~~~~~~~~~~~~  107 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFS--QRMCD---DLAEALAD---R----CVTIDLLDITAEIPKEL  107 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHTSS---S----CCEEEECCTTSCCCGGG
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECC--HHHHH---HHHHHHHh---c----cceeeeeeccccccccc
Confidence            345789999999999999999986   2467765443  33332   23333321   1    234555554330 0111


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      ...||.|+.|+..--. .           ..-+...++....+| |+|.+.++.+.+.
T Consensus       108 ~~~fD~Vv~~~~l~~~-~-----------~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRF-T-----------TEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             TTCCSEEEEESCGGGS-C-----------HHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             CCCccEEEEhhhhHhC-C-----------HHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence            4689999998652211 0           112345677777889 9999999998764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=90.04  E-value=0.22  Score=50.10  Aligned_cols=124  Identities=13%  Similarity=0.104  Sum_probs=76.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeecccCCcCc-cccccc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGVDATEMKE-HSELSK  114 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgVDATkL~~-~~~Lk~  114 (421)
                      +.+||=++=|.=.||+-+|+..+.+..|+|--.+  .+..   ..+++|++...-.+  +. +..-||.++-. ..   .
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~--~~av---~~~~~N~~~Ngl~~~~v~-v~~~Da~~~l~~~~---~  123 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDIS--SKAI---EIMKENFKLNNIPEDRYE-IHGMEANFFLRKEW---G  123 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSC--HHHH---HHHHHHHHHTTCCGGGEE-EECSCHHHHHHSCC---S
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECC--HHHH---HHHHHHHHHhCCCCceEE-EEeCCHHHHHHHhh---C
Confidence            5789888888888888888765323456665554  2222   24677776543222  44 44558776532 21   3


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL  188 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~  188 (421)
                      ..||+|+.| | .|.                ...|+..|.++|+++|-|++|..+..+.+.+.+...-++.|..
T Consensus       124 ~~fD~V~lD-P-~g~----------------~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~  179 (392)
T 3axs_A          124 FGFDYVDLD-P-FGT----------------PVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMAR  179 (392)
T ss_dssp             SCEEEEEEC-C-SSC----------------CHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSB
T ss_pred             CCCcEEEEC-C-CcC----------------HHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCc
Confidence            579999999 5 231                1258889999999999999998665433333344443444433

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=89.72  E-value=0.82  Score=42.27  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=64.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhh---CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEE-eecccCCcCcc--
Q 014642           37 SKHQILLVGEGDFSFSFALSQKF---GSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASII-HGVDATEMKEH--  109 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~---gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~Vl-hgVDATkL~~~--  109 (421)
                      +..+||=||=|.=.++..|++.+   .....+..|..|.-+++.+.   ++..+...... ++.+. ...|+..+...  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~---a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK---YKELVAKTSNLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHH---HHHHHHTCSSCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHH---HHHHHHhccCCCcceEEEEecchhhhhhhhc
Confidence            35699999988877776554332   12334445777755555543   33333211111 22322 23344333210  


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ..+....||.|+.++=.--.   +|           +..+++.+..+|+|||.+.|....
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYV---KD-----------IPATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCceeEEEEeeeeeec---CC-----------HHHHHHHHHHHcCCCcEEEEEEec
Confidence            01235789999988533221   11           246788888999999999987644

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=89.71  E-value=0.77  Score=44.35  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             cCCCCeEEEEecC------ChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCc
Q 014642           35 YSSKHQILLVGEG------DFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKE  108 (421)
Q Consensus        35 Yss~~rILLVGEG------DFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~  108 (421)
                      ..++.+||=+|=|      .=|  ..+++..+....|+|.-+...             +     .++++...-|++++..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-----~~v~~~i~gD~~~~~~  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-----SDADSTLIGDCATVHT  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-----CSSSEEEESCGGGCCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-----CCCEEEEECccccCCc
Confidence            4567899999993      244  334555553457888766554             1     2566613347776542


Q ss_pred             ccccccCcccEEEEcCCCC--CCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          109 HSELSKRKFDRIIFNFPHA--GFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       109 ~~~Lk~~~FDrIIFNFPH~--G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                           ...||.|+-|.++.  |... .+.    .....++...++.+..+|+|+|.+.+....+...  -.+.++.++.|
T Consensus       121 -----~~~fD~Vvsn~~~~~~g~~~-~d~----~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~G  188 (290)
T 2xyq_A          121 -----ANKWDLIISDMYDPRTKHVT-KEN----DSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFS  188 (290)
T ss_dssp             -----SSCEEEEEECCCCCC---CC-SCC----CCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEE
T ss_pred             -----cCcccEEEEcCCcccccccc-ccc----cchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcC
Confidence                 26799999996532  2211 110    1123456788999999999999999977665322  26667777777


Q ss_pred             cEEEEEe
Q 014642          187 LLRLDCV  193 (421)
Q Consensus       187 L~L~~~~  193 (421)
                      +.-++..
T Consensus       189 F~~v~~~  195 (290)
T 2xyq_A          189 WWTAFVT  195 (290)
T ss_dssp             EEEEEEE
T ss_pred             CcEEEEE
Confidence            7655544

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=89.33  E-value=3.6  Score=37.68  Aligned_cols=147  Identities=10%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHH---Hhhh---------hHHHHHHHHHhCC----------
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVV---KKFK---------EARSNLDTLKKLG----------   94 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~---~KY~---------~a~~Nl~~Lr~~G----------   94 (421)
                      +..+||=||=|.=.++..+++..  +.+|+++-+. .+.+.   ++..         ....|+..++...          
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFL-EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSC-HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCC-HHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            45799999988766544344432  3478777663 33332   1111         0113444443211          


Q ss_pred             ---CEEEeecccCC-cCcc-cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642           95 ---ASIIHGVDATE-MKEH-SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus        95 ---v~VlhgVDATk-L~~~-~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                         +.-+...|+++ +... ..+....||.|+.|+-.-.          +...-.=+..+|+.+..+|+|||.+.++-..
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~----------~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA----------VSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH----------HCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh----------hcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence               12233457776 3211 1233467999999973211          0000122457889999999999998886311


Q ss_pred             C-------------CCcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          170 T-------------APFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       170 g-------------~PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      .             .+++.=.+.++.+++||.+++...+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          218 EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            1             11233356678889999998887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=89.07  E-value=2.9  Score=40.36  Aligned_cols=135  Identities=12%  Similarity=0.068  Sum_probs=80.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .++...+||=||=|.=.++.+|++++.   ++.+|.+|..+.+.    .++.++..--.-+++++- -|.-+   . .  
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p---~~~~~~~dlp~v~~----~a~~~~~~~~~~rv~~~~-gD~~~---~-~--  241 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYP---GCKITVFDIPEVVW----TAKQHFSFQEEEQIDFQE-GDFFK---D-P--  241 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCS---SCEEEEEECHHHHH----HHHHHSCC--CCSEEEEE-SCTTT---S-C--
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCC---CceeEeccCHHHHH----HHHHhhhhcccCceeeec-Ccccc---C-C--
Confidence            356667999999999999999999984   46678888755442    244443321122344432 24432   1 1  


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC----C-CC----------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT----T-AP----------------  172 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~----g-~P----------------  172 (421)
                      ...+|.|++..=.-.+   .|         +=....++++.+.|+|+|.|.|.=.-    + .|                
T Consensus       242 ~~~~D~~~~~~vlh~~---~d---------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g  309 (353)
T 4a6d_A          242 LPEADLYILARVLHDW---AD---------GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEG  309 (353)
T ss_dssp             CCCCSEEEEESSGGGS---CH---------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSC
T ss_pred             CCCceEEEeeeecccC---CH---------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCC
Confidence            2347988875422111   11         11235677888899999998886421    1 12                


Q ss_pred             --cCcccHHHHHHhCCcEEEEEee
Q 014642          173 --FCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       173 --Y~sWnI~~LAa~aGL~L~~~~~  194 (421)
                        ++.=+.++|.+++||..++..+
T Consensus       310 ~ert~~e~~~ll~~AGf~~v~v~~  333 (353)
T 4a6d_A          310 QERTPTHYHMLLSSAGFRDFQFKK  333 (353)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHCCCceEEEEE
Confidence              1111356788899999887754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=88.76  E-value=0.42  Score=45.96  Aligned_cols=112  Identities=10%  Similarity=0.016  Sum_probs=69.5

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccc---cCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSL---DSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSl---DS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      ...++.+||=||=|-=.||..|++. +   .|+|.-.   .+...+ . .-.    ++.+...++.++-++|++.+.   
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~-~---~V~gvD~~~~~~~~~~-~-~~~----~~~~~~~~v~~~~~~D~~~l~---  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL-K---NVREVKGLTKGGPGHE-E-PIP----MSTYGWNLVRLQSGVDVFFIP---  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS-T---TEEEEEEECCCSTTSC-C-CCC----CCSTTGGGEEEECSCCTTTSC---
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc-C---CEEEEeccccCchhHH-H-HHH----hhhcCCCCeEEEeccccccCC---
Confidence            3456789999998888889999886 2   5766322   111111 0 000    011111357777777888764   


Q ss_pred             ccccCcccEEEEcCCC-CCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          111 ELSKRKFDRIIFNFPH-AGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH-~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                         ...||.|+-|.+. +|.        ....+...+ ..+..+..+|+|||.+.+....+
T Consensus       146 ---~~~fD~V~sd~~~~~g~--------~~~d~~~~l-~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 ---PERCDTLLCDIGESSPN--------PTVEAGRTL-RVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             ---CCCCSEEEECCCCCCSS--------HHHHHHHHH-HHHHHHHHHCCTTCEEEEEESCC
T ss_pred             ---cCCCCEEEECCccccCc--------chhhHHHHH-HHHHHHHHHhCCCCEEEEEeCCC
Confidence               2579999999864 342        111232223 47788889999999888877665

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=88.75  E-value=0.25  Score=45.12  Aligned_cols=115  Identities=19%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh----CCCEEEeecccCCcCcccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK----LGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~----~Gv~VlhgVDATkL~~~~~  111 (421)
                      .+..+||=||=|.=.++..|++.   +.+++++-.+ .+.+ +   .+..++.....    ..+ .+...|+..+.... 
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s-~~~l-~---~a~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~-  125 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDAS-DKML-K---YALKERWNRRKEPAFDKW-VIEEANWLTLDKDV-  125 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESC-HHHH-H---HHHHHHHHTTTSHHHHTC-EEEECCGGGHHHHS-
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECC-HHHH-H---HHHHhhhhccccccccee-eEeecChhhCcccc-
Confidence            35679999999999999999986   2367666554 2222 2   13333321111    123 33445666654221 


Q ss_pred             cccCcccEEEEc---CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          112 LSKRKFDRIIFN---FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       112 Lk~~~FDrIIFN---FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      +....||.|+.+   +-|+....         ........+++.+..+|+|+|.+.++..+
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPDSK---------GDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCCSS---------SSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCCCeEEEEEcChHHhhcCccc---------cCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            345789999986   33443100         01233467889999999999999998765

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=88.38  E-value=1.8  Score=43.02  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=72.5

Q ss_pred             HHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-----CCEEEeecccCCcCcccccccCcccEEEEcCCC
Q 014642           52 SFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-----GASIIHGVDATEMKEHSELSKRKFDRIIFNFPH  126 (421)
Q Consensus        52 SlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-----Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFPH  126 (421)
                      |..||... ....|+|.-.+. .    +.....+|++.+--.     ....+...|++++..   +....||+|+-+=|+
T Consensus       163 T~~la~~~-~~~~l~A~D~~~-~----R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~---~~~~~fD~VLlDaPC  233 (359)
T 4fzv_A          163 TLALLQTG-CCRNLAANDLSP-S----RIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE---LEGDTYDRVLVDVPC  233 (359)
T ss_dssp             HHHHHHTT-CEEEEEEECSCH-H----HHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH---HSTTCEEEEEEECCC
T ss_pred             HHHHHHhc-CCCcEEEEcCCH-H----HHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch---hccccCCEEEECCcc
Confidence            34444432 233577654442 2    122345666665321     123456678877653   245789999999999


Q ss_pred             CCC---C-CCcc------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH
Q 014642          127 AGF---H-GKEE------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE  180 (421)
Q Consensus       127 ~G~---~-GkEd------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~  180 (421)
                      .|.   . .++.      ....+.....|=...+.+|..+|+|||.|.=+-|+=.|-..-.+++
T Consensus       234 Sg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~  297 (359)
T 4fzv_A          234 TTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ  297 (359)
T ss_dssp             CCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHH
T ss_pred             CCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHH
Confidence            982   1 1111      2233433344445678899999999999999999988876555554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=88.28  E-value=0.42  Score=43.39  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=||=|.=..+..|++..  +.++|+.-.+  .++.++   ++++   .+..+..+ ++..||..+..  .+..
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~--~~~~~~---a~~~---~~~~~~~~~~~~~~a~~~~~--~~~~  126 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECN--DGVFQR---LRDW---APRQTHKVIPLKGLWEDVAP--TLPD  126 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECC--HHHHHH---HHHH---GGGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             cCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCC--HHHHHH---HHHH---HhhCCCceEEEeehHHhhcc--cccc
Confidence            456799999999999999998764  3466654333  344332   3332   23344332 34456665543  2346


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ..||.|+|+=.....         ...|..-...||+.+..+|+|||.+..
T Consensus       127 ~~FD~i~~D~~~~~~---------~~~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          127 GHFDGILYDTYPLSE---------ETWHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             TCEEEEEECCCCCBG---------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cCCceEEEeeeeccc---------chhhhcchhhhhhhhhheeCCCCEEEE
Confidence            789999997332221         112444567889999999999998754

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=87.93  E-value=2.8  Score=42.20  Aligned_cols=128  Identities=22%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ...+.+||=+|=|.=.|++.||+.   +..++|.-.+  ++..+   .|+.|++... ..+ -+..-|+.++..      
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s--~~ai~---~A~~n~~~ng-l~v-~~~~~d~~~~~~------  351 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSN--EFAIE---MARRNVEINN-VDA-EFEVASDREVSV------  351 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHHT-CCE-EEEECCTTTCCC------
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcC-CcE-EEEECChHHcCc------
Confidence            345679999999998999999875   3467665544  23332   3566664322 223 344457776532      


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ..||.||.|-|..|.            ...++..    .. .|+|+|-|.|+.....  -.-++..|   . |.+.+..+
T Consensus       352 ~~fD~Vv~dPPr~g~------------~~~~~~~----l~-~l~p~givyvsc~p~t--larDl~~l---~-y~l~~~~~  408 (425)
T 2jjq_A          352 KGFDTVIVDPPRAGL------------HPRLVKR----LN-REKPGVIVYVSCNPET--FARDVKML---D-YRIDEIVA  408 (425)
T ss_dssp             TTCSEEEECCCTTCS------------CHHHHHH----HH-HHCCSEEEEEESCHHH--HHHHHHHS---S-CCEEEEEE
T ss_pred             cCCCEEEEcCCccch------------HHHHHHH----HH-hcCCCcEEEEECChHH--HHhHHhhC---e-EEEEEEEE
Confidence            179999999998774            1112221    11 2799998888753211  11122222   2 88888888


Q ss_pred             CCCCCCCCC
Q 014642          195 FRKEDYPGY  203 (421)
Q Consensus       195 F~~~~YPGY  203 (421)
                      ||  .||.=
T Consensus       409 ~D--mFP~T  415 (425)
T 2jjq_A          409 LD--MFPHT  415 (425)
T ss_dssp             EC--CSTTS
T ss_pred             EC--cCCCC
Confidence            88  57743

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=87.37  E-value=3  Score=40.72  Aligned_cols=136  Identities=18%  Similarity=0.076  Sum_probs=83.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCcccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSE  111 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~  111 (421)
                      ...+.+||=+|=|.=.++..+|... ....|++.-.+. +.+ +   .|+.|++.   .|+   .-+..-|+.++..   
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~-~~l-~---~A~~n~~~---~gl~~~i~~~~~D~~~~~~---  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYR-KHL-I---GAEMNALA---AGVLDKIKFIQGDATQLSQ---  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCH-HHH-H---HHHHHHHH---TTCGGGCEEEECCGGGGGG---
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCH-HHH-H---HHHHHHHH---cCCCCceEEEECChhhCCc---
Confidence            3456789988888888888888764 223677766653 222 2   35666543   343   2344568887642   


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEE
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLD  191 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~  191 (421)
                       ....||.||.|.|.--..|...      ....|...|++.+..+|  +|.+.+...     +.-.++++..+.|+...+
T Consensus       283 -~~~~fD~Ii~npPyg~r~~~~~------~~~~ly~~~~~~l~r~l--~g~~~~i~~-----~~~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          283 -YVDSVDFAISNLPYGLKIGKKS------MIPDLYMKFFNELAKVL--EKRGVFITT-----EKKAIEEAIAENGFEIIH  348 (373)
T ss_dssp             -TCSCEEEEEEECCCC------C------CHHHHHHHHHHHHHHHE--EEEEEEEES-----CHHHHHHHHHHTTEEEEE
T ss_pred             -ccCCcCEEEECCCCCcccCcch------hHHHHHHHHHHHHHHHc--CCeEEEEEC-----CHHHHHHHHHHcCCEEEE
Confidence             2368999999999643222111      23456678888888888  455444433     223455677788999988


Q ss_pred             EeeCC
Q 014642          192 CVQFR  196 (421)
Q Consensus       192 ~~~F~  196 (421)
                      +.++.
T Consensus       349 ~~~~~  353 (373)
T 3tm4_A          349 HRVIG  353 (373)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            86653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=86.32  E-value=2.6  Score=43.04  Aligned_cols=112  Identities=7%  Similarity=-0.024  Sum_probs=63.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHH----hhhhHHHHHHHHH--hCCCEEEeecccCCcCcc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVK----KFKEARSNLDTLK--KLGASIIHGVDATEMKEH  109 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~----KY~~a~~Nl~~Lr--~~Gv~VlhgVDATkL~~~  109 (421)
                      .++++||=||=|.=++++.||+..+. ..+++--.+.  ++.+    ....++.|++.+.  -..+.++.+ |+......
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~--~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g-D~~~~~~~  316 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMD--DASDLTILQYEELKKRCKLYGMRLNNVEFSLK-KSFVDNNR  316 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCH--HHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES-SCSTTCHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCH--HHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc-Cccccccc
Confidence            46789999999999999999998753 3566555442  2222    1112244444322  113444443 22211100


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      +......||+|+.|....+    +    .       +...++.+...|++||.|.+.
T Consensus       317 ~~~~~~~FDvIvvn~~l~~----~----d-------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          317 VAELIPQCDVILVNNFLFD----E----D-------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHHGGGCSEEEECCTTCC----H----H-------HHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccCCCCEEEEeCcccc----c----c-------HHHHHHHHHHhCCCCeEEEEe
Confidence            0001367999999854422    1    1       123456677899999998886

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=86.04  E-value=1.4  Score=42.96  Aligned_cols=134  Identities=17%  Similarity=0.216  Sum_probs=79.6

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc-------
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS-------  110 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~-------  110 (421)
                      ..+||=+|=|.=.||++||+.   +..|+|.-.+  .+..+   .++.|++...-.++.+ ..-||.++....       
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~--~~ai~---~a~~n~~~ng~~~v~~-~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIA--KPSVA---AAQYNIAANHIDNVQI-IRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCC--HHHHH---HHHHHHHHTTCCSEEE-ECCCSHHHHHHHSSCCCCT
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECC--HHHHH---HHHHHHHHcCCCceEE-EECCHHHHHHHHhhccccc
Confidence            468988888888888889874   2467766554  22322   4666765321113433 344776542110       


Q ss_pred             -----ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhC
Q 014642          111 -----ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKH  185 (421)
Q Consensus       111 -----~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~a  185 (421)
                           .+....||.||.|=|-.|.            +.        .+.++|+++|.|....|+.. .-.-++..|..  
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g~------------~~--------~~~~~l~~~g~ivyvsc~p~-t~ard~~~l~~--  341 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSGL------------DS--------ETEKMVQAYPRILYISCNPE-TLCKNLETLSQ--  341 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTCC------------CH--------HHHHHHTTSSEEEEEESCHH-HHHHHHHHHHH--
T ss_pred             cccccccccCCCCEEEECcCcccc------------HH--------HHHHHHhCCCEEEEEECCHH-HHHHHHHHHhh--
Confidence                 0112379999999998763            11        12334557888877777632 11234555653  


Q ss_pred             CcEEEEEeeCCCCCCCCCcc
Q 014642          186 SLLRLDCVQFRKEDYPGYSN  205 (421)
Q Consensus       186 GL~L~~~~~F~~~~YPGY~h  205 (421)
                      ||.+.+..+||  .||.=.|
T Consensus       342 ~y~~~~~~~~D--~FP~T~H  359 (369)
T 3bt7_A          342 THKVERLALFD--QFPYTHH  359 (369)
T ss_dssp             HEEEEEEEEEC--CSTTSSC
T ss_pred             CcEEEEEEeec--cCCCCCc
Confidence            69999999998  4884333

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=85.36  E-value=2.4  Score=38.75  Aligned_cols=145  Identities=12%  Similarity=0.114  Sum_probs=81.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccC--HHHHHHhhhh---------HHH----------HHH----HHH
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDS--YETVVKKFKE---------ARS----------NLD----TLK   91 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS--~eeL~~KY~~---------a~~----------Nl~----~Lr   91 (421)
                      ++.+||=||=|.=-++..++.. + ..+|+|+=+..  .+.+.++...         ...          +++    .++
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-h-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            4578999999995566555543 2 23688765542  1222111100         000          011    111


Q ss_pred             hCCCEEEeecccCCcCcccccccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642           92 KLGASIIHGVDATEMKEHSELSKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus        92 ~~Gv~VlhgVDATkL~~~~~Lk~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      . .++-+.-.|+++...-..+....||.|+-+|=  |+..            +..=+...++++..+|+|||.+.++-..
T Consensus       133 ~-~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~------------~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          133 A-AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC------------SLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             H-HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS------------SHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             h-hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC------------CHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            1 23324556777743211122458999999872  2221            1122456888899999999999888532


Q ss_pred             CC-------------CcCcccHHHHHHhCCcEEEEEeeCC
Q 014642          170 TA-------------PFCKWHIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       170 g~-------------PY~sWnI~~LAa~aGL~L~~~~~F~  196 (421)
                      ..             +++.=.+.++.+++||.+++...+.
T Consensus       200 ~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          200 RLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             cCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence            21             1122246778888999999887664

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=84.65  E-value=3.1  Score=39.74  Aligned_cols=126  Identities=12%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +...+||=||=|.=.++..|++++.   ++..|.+|-. .+.+.   +..    +  .++++.. .|+.+ .    +.  
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~-~~~~~---a~~----~--~~v~~~~-~d~~~-~----~~--  250 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFP---HLKCTVFDQP-QVVGN---LTG----N--ENLNFVG-GDMFK-S----IP--  250 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCT---TSEEEEEECH-HHHSS---CCC----C--SSEEEEE-CCTTT-C----CC--
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCC---CCeEEEeccH-HHHhh---ccc----C--CCcEEEe-CccCC-C----CC--
Confidence            5668999999999999999999873   3455667763 44332   111    1  2444443 35554 1    22  


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCC---CCeEEEEecC----CC-----------------
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP---RGEVHVSHKT----TA-----------------  171 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~---~GeIHVTLk~----g~-----------------  171 (421)
                      .||.|+.++..--.   .         ..-...+++.+..+|+|   +|.|.|.-..    +.                 
T Consensus       251 ~~D~v~~~~vlh~~---~---------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~  318 (358)
T 1zg3_A          251 SADAVLLKWVLHDW---N---------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT  318 (358)
T ss_dssp             CCSEEEEESCGGGS---C---------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcccccCC---C---------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence            39999998764332   1         11134678888999999   9998875321    11                 


Q ss_pred             -----CcCcccHHHHHHhCCcEEEEEee
Q 014642          172 -----PFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       172 -----PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                           .++.=++.++.+++||..++..+
T Consensus       319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~  346 (358)
T 1zg3_A          319 MFLGKERTKQEWEKLIYDAGFSSYKITP  346 (358)
T ss_dssp             HHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence                 01111445677788988887765

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=84.54  E-value=1.5  Score=44.85  Aligned_cols=104  Identities=22%  Similarity=0.214  Sum_probs=65.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +..+||=||=|.=.++..|++. + +..|+|.-..  + +.+   .|+.|++...- ..++++ .-|+.++.    + ..
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s--~-~l~---~A~~~~~~~gl~~~v~~~-~~d~~~~~----~-~~  223 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAS--T-MAQ---HAEVLVKSNNLTDRIVVI-PGKVEEVS----L-PE  223 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECH--H-HHH---HHHHHHHHTTCTTTEEEE-ESCTTTCC----C-SS
T ss_pred             CCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcH--H-HHH---HHHHHHHHcCCCCcEEEE-ECchhhCc----c-CC
Confidence            5679999999998899988874 2 4578887664  2 222   35556554321 124444 44666642    2 25


Q ss_pred             cccEEEEcCC-CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFP-HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFP-H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      +||.||.|-| +...            +..+ ...+..+..+|+|+|.+.++.
T Consensus       224 ~fD~Ivs~~~~~~~~------------~e~~-~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          224 QVDIIISEPMGYMLF------------NERM-LESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CEEEEECCCCHHHHT------------CHHH-HHHHHHGGGGEEEEEEEESCE
T ss_pred             CeEEEEEeCchHhcC------------cHHH-HHHHHHHHHhcCCCCEEEEEe
Confidence            7999999977 2221            1122 334557889999999987654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=83.86  E-value=1.2  Score=44.20  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHH--------------hC-CCEEEeec
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLK--------------KL-GASIIHGV  101 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr--------------~~-Gv~VlhgV  101 (421)
                      .+.+||=+|=|.=.+++.+|+..+ +..|+|--.+  ++..   .-++.|++.+.              .. ++.| ..-
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~--~~av---~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v-~~~  119 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDIS--EDAY---ELMKRNVMLNFDGELRESKGRAILKGEKTIVI-NHD  119 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESC--HHHH---HHHHHHHHHHCCSCCEECSSEEEEESSSEEEE-EES
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECC--HHHH---HHHHHHHHHhcccccccccccccccCCCceEE-EcC
Confidence            567999999999999999998865 3457665554  2222   24678887761              11 2333 444


Q ss_pred             ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ||.++-...   ...||.|+.| | .|.                ...|+.+|..+|+++|.|+||..+
T Consensus       120 Da~~~~~~~---~~~fD~I~lD-P-~~~----------------~~~~l~~a~~~lk~gG~l~vt~td  166 (378)
T 2dul_A          120 DANRLMAER---HRYFHFIDLD-P-FGS----------------PMEFLDTALRSAKRRGILGVTATD  166 (378)
T ss_dssp             CHHHHHHHS---TTCEEEEEEC-C-SSC----------------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cHHHHHHhc---cCCCCEEEeC-C-CCC----------------HHHHHHHHHHhcCCCCEEEEEeec
Confidence            776653221   3579999966 5 232                137888999999999999999744

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=83.32  E-value=11  Score=34.99  Aligned_cols=124  Identities=11%  Similarity=0.126  Sum_probs=81.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ++.+||=||=|.=..+.+||+.. ....++|+-.+. ..+    ..|..|++...-.+ +.+..+ |+-.     .+...
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~-~al----~~A~~N~~~~gl~~~i~~~~~-d~l~-----~l~~~   82 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVE-GPY----QSAVKNVEAHGLKEKIQVRLA-NGLA-----AFEET   82 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSH-HHH----HHHHHHHHHTTCTTTEEEEEC-SGGG-----GCCGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCH-HHH----HHHHHHHHHcCCCceEEEEEC-chhh-----hcccC
Confidence            45689999999999999999863 344677776663 222    24667765543222 333333 4321     12222


Q ss_pred             -cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          116 -KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       116 -~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                       .||.|+..    |- |           ..++..++..+...|+++|.+.+...++.    -.+.+...++||.+.+.
T Consensus        83 ~~~D~Ivia----G~-G-----------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~----~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           83 DQVSVITIA----GM-G-----------GRLIARILEEGLGKLANVERLILQPNNRE----DDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             GCCCEEEEE----EE-C-----------HHHHHHHHHHTGGGCTTCCEEEEEESSCH----HHHHHHHHHTTEEEEEE
T ss_pred             cCCCEEEEc----CC-C-----------hHHHHHHHHHHHHHhCCCCEEEEECCCCH----HHHHHHHHHCCCEEEEE
Confidence             69998862    32 2           35678899999999999999988777542    34566677889887765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=83.09  E-value=2.5  Score=34.56  Aligned_cols=73  Identities=11%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ..+|+++|=|.+  ..+|++.+. .+..+++...+.            +.++.+++.|+.++++ |+++......+.-..
T Consensus         6 ~~~v~I~G~G~i--G~~la~~L~~~g~~V~~id~~~------------~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~   70 (141)
T 3llv_A            6 RYEYIVIGSEAA--GVGLVRELTAAGKKVLAVDKSK------------EKIELLEDEGFDAVIA-DPTDESFYRSLDLEG   70 (141)
T ss_dssp             CCSEEEECCSHH--HHHHHHHHHHTTCCEEEEESCH------------HHHHHHHHTTCEEEEC-CTTCHHHHHHSCCTT
T ss_pred             CCEEEEECCCHH--HHHHHHHHHHCCCeEEEEECCH------------HHHHHHHHCCCcEEEC-CCCCHHHHHhCCccc
Confidence            468999999874  555554441 245677765441            2356677788887765 887754332223357


Q ss_pred             ccEEEEcCC
Q 014642          117 FDRIIFNFP  125 (421)
Q Consensus       117 FDrIIFNFP  125 (421)
                      .|.||.--|
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            899998666

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=83.00  E-value=9.1  Score=36.35  Aligned_cols=100  Identities=14%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++.+. .  +-.|.+|- ..+.+.   +..      ..++++. .-|+.+   .  +. 
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~-~~~~~~---a~~------~~~v~~~-~~d~~~---~--~p-  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-K--LKCIVFDR-PQVVEN---LSG------SNNLTYV-GGDMFT---S--IP-  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-T--CEEEEEEC-HHHHTT---CCC------BTTEEEE-ECCTTT---C--CC-
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-C--CeEEEeeC-HHHHhh---ccc------CCCcEEE-eccccC---C--CC-
Confidence            45678999999999999999999874 2  33556666 444432   111      1234433 335543   1  11 


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCC---CCeEEEEe
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRP---RGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~---~GeIHVTL  167 (421)
                       .||.|+.++-.--.   .         ..-...+++.+..+|+|   +|.|.|.-
T Consensus       246 -~~D~v~~~~~lh~~---~---------d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          246 -NADAVLLKYILHNW---T---------DKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             -CCSEEEEESCGGGS---C---------HHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             -CccEEEeehhhccC---C---------HHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence             29999998753322   1         11134778889999999   99988763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=82.86  E-value=12  Score=36.05  Aligned_cols=128  Identities=18%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++.+.   ++..|.+|- ..+.+.-.   .      ..+++++ .-|+.+  .   +..
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~---~------~~~v~~~-~~d~~~--~---~p~  261 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYP---SINAINFDL-PHVIQDAP---A------FSGVEHL-GGDMFD--G---VPK  261 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTTCC---C------CTTEEEE-ECCTTT--C---CCC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeh-HHHHHhhh---h------cCCCEEE-ecCCCC--C---CCC
Confidence            55678999999999999999999874   344566776 44433211   1      1234333 335543  1   112


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC--CCC--------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT--TAP--------------------  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~P--------------------  172 (421)
                      .  |.|+..+-.-.. .           ..-...+++.+..+|+|+|.|.|.=..  ..+                    
T Consensus       262 ~--D~v~~~~vlh~~-~-----------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~  327 (368)
T 3reo_A          262 G--DAIFIKWICHDW-S-----------DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN  327 (368)
T ss_dssp             C--SEEEEESCGGGB-C-----------HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred             C--CEEEEechhhcC-C-----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence            2  999987754322 0           112346788899999999998885322  111                    


Q ss_pred             -----cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 -----FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 -----Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                           +..=+++++.+++||..++..+-
T Consensus       328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~  355 (368)
T 3reo_A          328 PGGKERTEKEFQALAMASGFRGFKVASC  355 (368)
T ss_dssp             SBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence                 11113567778888888877554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=82.68  E-value=4.6  Score=38.22  Aligned_cols=78  Identities=21%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||=|.=.++..|++.   +..|+|.-.|.  .+.+   .++.|+....-.+++++. -|+.++..      .
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~--~~~~---~a~~~~~~~~~~~v~~~~-~D~~~~~~------~  105 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDS--RMIS---EVKKRCLYEGYNNLEVYE-GDAIKTVF------P  105 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCH--HHHH---HHHHHHHHTTCCCEEC-----CCSSCC------C
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCH--HHHH---HHHHHHHHcCCCceEEEE-CchhhCCc------c
Confidence            45679999999999999999876   34788776663  2222   344555422112344443 47776532      3


Q ss_pred             cccEEEEcCCCCC
Q 014642          116 KFDRIIFNFPHAG  128 (421)
Q Consensus       116 ~FDrIIFNFPH~G  128 (421)
                      .||.||.|.|.-.
T Consensus       106 ~~D~Vv~n~py~~  118 (299)
T 2h1r_A          106 KFDVCTANIPYKI  118 (299)
T ss_dssp             CCSEEEEECCGGG
T ss_pred             cCCEEEEcCCccc
Confidence            7999999999875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=82.05  E-value=3.1  Score=36.81  Aligned_cols=79  Identities=15%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .+.+||=+|=|.=.++..|++.   +..|+|.-++  +.+.+   .+..|++.+.- ..+. +..-|+.++.     ...
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s--~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~-----~~~  143 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDID--PVKIA---LARNNAEVYGIADKIE-FICGDFLLLA-----SFL  143 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESC--HHHHH---HHHHHHHHTTCGGGEE-EEESCHHHHG-----GGC
T ss_pred             CCCEEEECccccCHHHHHHHHc---CCEEEEEECC--HHHHH---HHHHHHHHcCCCcCeE-EEECChHHhc-----ccC
Confidence            6789999999999999999986   2467766554  22332   24555543321 1233 3445777664     246


Q ss_pred             cccEEEEcCCCCCC
Q 014642          116 KFDRIIFNFPHAGF  129 (421)
Q Consensus       116 ~FDrIIFNFPH~G~  129 (421)
                      .||.|+.|.|..+.
T Consensus       144 ~~D~v~~~~~~~~~  157 (241)
T 3gdh_A          144 KADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEECCCCSSG
T ss_pred             CCCEEEECCCcCCc
Confidence            89999999998763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=81.10  E-value=21  Score=34.46  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=77.7

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ++...+||=||=|.=.++..|++++.   ++..|.+|- .++.+.   +..      ..++++ ..-|+.+ .    +..
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~------~~~v~~-~~~D~~~-~----~p~  259 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYP---TIKGVNFDL-PHVISE---APQ------FPGVTH-VGGDMFK-E----VPS  259 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC------CTTEEE-EECCTTT-C----CCC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCC---CCeEEEecC-HHHHHh---hhh------cCCeEE-EeCCcCC-C----CCC
Confidence            56678999999999999999999874   344567776 333332   111      123433 3335554 1    112


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC--CCC--------------------
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT--TAP--------------------  172 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~--g~P--------------------  172 (421)
                      .  |.|+..+-.-.. .           .+-...+++++...|+|+|.+.|.=..  ..+                    
T Consensus       260 ~--D~v~~~~vlh~~-~-----------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~  325 (364)
T 3p9c_A          260 G--DTILMKWILHDW-S-----------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHN  325 (364)
T ss_dssp             C--SEEEEESCGGGS-C-----------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred             C--CEEEehHHhccC-C-----------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcc
Confidence            2  999876543221 0           112347788899999999998875321  111                    


Q ss_pred             -----cCcccHHHHHHhCCcEEEEEeeC
Q 014642          173 -----FCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       173 -----Y~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                           +..=++.++.+++||..++..+.
T Consensus       326 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~  353 (364)
T 3p9c_A          326 PGGRERYEREFQALARGAGFTGVKSTYI  353 (364)
T ss_dssp             SSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence                 11113567788889888877654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=80.06  E-value=2.7  Score=39.80  Aligned_cols=98  Identities=16%  Similarity=0.287  Sum_probs=60.9

Q ss_pred             cCCCCeEEEEecCCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      -..+++||+.|=|.. .++..||++.|  .+|+||+...            ++++.++++|+...++-+..++.+...-.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~------------~~~~~~~~lGa~~~i~~~~~~~~~~~~~~  229 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDD------------AKLNLARRLGAEVAVNARDTDPAAWLQKE  229 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCH------------HHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCH------------HHHHHHHHcCCCEEEeCCCcCHHHHHHHh
Confidence            456889999998874 44555577775  3899986542            24567788998766544333322211001


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ...+|.||.+-   |.                 ..-+..+.++|+++|.|.+.
T Consensus       230 ~g~~d~vid~~---g~-----------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          230 IGGAHGVLVTA---VS-----------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HSSEEEEEESS---CC-----------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEEeC---CC-----------------HHHHHHHHHHhccCCEEEEe
Confidence            23789888763   32                 12356677889999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.88
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.73
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.51
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.49
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.14
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.89
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.77
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.56
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.5
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.48
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.23
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.17
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.13
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.88
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.78
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.64
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	95.39
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	95.33
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.13
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.07
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.98
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.84
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.82
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.77
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.76
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.66
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	94.56
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	94.46
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.41
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	94.33
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	94.31
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	94.0
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	93.47
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	93.31
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.29
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	93.18
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	93.13
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	93.03
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	92.89
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	92.81
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	92.78
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	92.73
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	92.68
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.62
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	91.69
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	90.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	90.16
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.07
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	89.49
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	89.35
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	89.14
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.6
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	88.52
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.11
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.85
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	87.84
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	87.55
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	87.27
d2h00a1	250	Methyltransferase 10 domain containing protein MET	85.99
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	84.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	84.46
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.71
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	82.99
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	82.33
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	80.95

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.88  E-value=2.5e-05  Score=69.73  Aligned_cols=150  Identities=13%  Similarity=0.230  Sum_probs=102.0

Q ss_pred             cccccceeeeccCCCC-eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecc
Q 014642           24 DEKEEEKWIMHYSSKH-QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVD  102 (421)
Q Consensus        24 ~~~~~~K~i~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVD  102 (421)
                      +++...+|-..|.... .||=||=|+=.|...||+.+ +..++|+--.. ...+ .   .+...+..+.-.++.+++ .|
T Consensus        17 p~~~~~~w~~~f~~~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~-~~~v-~---~a~~~~~~~~l~Ni~~~~-~d   89 (204)
T d1yzha1          17 PLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQ-KSVL-S---YALDKVLEVGVPNIKLLW-VD   89 (204)
T ss_dssp             GGGTTTTHHHHHTSCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESC-HHHH-H---HHHHHHHHHCCSSEEEEE-CC
T ss_pred             hHHhhccHHHHcCCCCCeEEEEeccCCHHHHHHHHHC-CCCceEEEecc-HHHH-H---HHHHhhhhhccccceeee-cC
Confidence            4445567888887644 68999999999999999987 46688885543 2222 2   243444444434565555 58


Q ss_pred             cCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHH
Q 014642          103 ATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELA  182 (421)
Q Consensus       103 ATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LA  182 (421)
                      |..|...  +....+|.|+.|||..-.+.+.      .+.|.+-..|+.....+|+|||.|+++.- -..|-.|-++.+.
T Consensus        90 a~~l~~~--~~~~~~~~i~i~fPdPw~K~~h------~krRl~~~~~l~~~~~~LkpgG~l~i~TD-~~~Y~~~~le~~~  160 (204)
T d1yzha1          90 GSDLTDY--FEDGEIDRLYLNFSDPWPKKRH------EKRRLTYKTFLDTFKRILPENGEIHFKTD-NRGLFEYSLVSFS  160 (204)
T ss_dssp             SSCGGGT--SCTTCCSEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHSCTTCEEEEEES-CHHHHHHHHHHHH
T ss_pred             HHHHhhh--ccCCceehhcccccccccchhh------hhhhhhHHHHHHHHHHhCCCCcEEEEEEC-CccHHHHHHHHHH
Confidence            9988654  4567899999999988753221      12233347899999999999999998653 3457777777665


Q ss_pred             HhCCcEEE
Q 014642          183 RKHSLLRL  190 (421)
Q Consensus       183 a~aGL~L~  190 (421)
                      +. ++.+.
T Consensus       161 ~~-~~~~~  167 (204)
T d1yzha1         161 QY-GMKLN  167 (204)
T ss_dssp             HH-TCEEE
T ss_pred             HC-Ccccc
Confidence            54 55443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=4.5e-05  Score=67.97  Aligned_cols=159  Identities=13%  Similarity=0.240  Sum_probs=104.5

Q ss_pred             cceeeeccCCCC-eEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCc
Q 014642           28 EEKWIMHYSSKH-QILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEM  106 (421)
Q Consensus        28 ~~K~i~~Yss~~-rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL  106 (421)
                      ..+|-..|.... .||=||=|+=-|+..||+.+ ...++++--.. ...+ .   .+..+++...-.++.+ ...||..|
T Consensus        19 ~~~w~~~F~~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~-~~~i-~---~a~~~~~~~~l~Nv~~-~~~Da~~l   91 (204)
T d2fcaa1          19 KGKWNTVFGNDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELF-KSVI-V---TAVQKVKDSEAQNVKL-LNIDADTL   91 (204)
T ss_dssp             TTCHHHHHTSCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSC-HHHH-H---HHHHHHHHSCCSSEEE-ECCCGGGH
T ss_pred             HhHHHHHcCCCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecc-hHHH-H---HHHHHHHHHhccCchh-cccchhhh
Confidence            346777777754 67999999999999999987 45677765443 2222 2   1333333322223444 55699988


Q ss_pred             CcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          107 KEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       107 ~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      ...  +....+|.|..+||..-.+.+.      .++|.+-..|+..+..+|+|||.|+|+- +-.+|-.|-++.+.+...
T Consensus        92 ~~~--~~~~~~d~v~i~fp~P~~k~~h------~k~Rl~~~~~l~~~~r~LkpgG~l~i~T-D~~~y~~~~~~~~~~~~~  162 (204)
T d2fcaa1          92 TDV--FEPGEVKRVYLNFSDPWPKKRH------EKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSLKSFSEYGL  162 (204)
T ss_dssp             HHH--CCTTSCCEEEEESCCCCCSGGG------GGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHHHHHHHHTC
T ss_pred             hcc--cCchhhhccccccccccchhhh------cchhhhHHHHHHHHHHhCCCCcEEEEEE-CChHHHHHHHHHHHHCCC
Confidence            643  4568899999999988753221      1233344689999999999999999974 455788998888888765


Q ss_pred             cEEEEEeeCCCCCCCC
Q 014642          187 LLRLDCVQFRKEDYPG  202 (421)
Q Consensus       187 L~L~~~~~F~~~~YPG  202 (421)
                      +......+.....+++
T Consensus       163 ~~~~~~~d~~~~~~~~  178 (204)
T d2fcaa1         163 LLTYVSLDLHNSNLEG  178 (204)
T ss_dssp             EEEEEESSGGGSSCTT
T ss_pred             ccccCChhhcccCCCC
Confidence            5444444443344443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.51  E-value=6.4e-05  Score=70.82  Aligned_cols=166  Identities=13%  Similarity=0.083  Sum_probs=102.8

Q ss_pred             cccccceeeecc-CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeec
Q 014642           24 DEKEEEKWIMHY-SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGV  101 (421)
Q Consensus        24 ~~~~~~K~i~~Y-ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgV  101 (421)
                      |...+.+|+..+ +++.+||=+|-|.=.||.++|+. | +..|++.-.+  ++..+   .++.|++...-. .+. +..-
T Consensus       131 Dqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s--~~al~---~a~~N~~~ngl~~~~~-~~~~  202 (324)
T d2as0a2         131 DQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKS--PRAIE---TAKENAKLNGVEDRMK-FIVG  202 (324)
T ss_dssp             TTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESC--HHHHH---HHHHHHHHTTCGGGEE-EEES
T ss_pred             chhhHHHHHHhhcCCCCeeecccCcccchhhhhhhc-C-CcEEEeecCC--HHHHH---HHHHHHHHcCCCccce-eeec
Confidence            445567788775 45899999999999999988865 3 4466655444  22322   366665443211 123 3445


Q ss_pred             ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCcc--cH
Q 014642          102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCKW--HI  178 (421)
Q Consensus       102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW--nI  178 (421)
                      |+.+.-....-.+.+||+||.|-|..+. ++.+    ...-......++..|..+|+|||.+..+.+...- ...|  .|
T Consensus       203 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~-~~~~----~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v  277 (324)
T d2as0a2         203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQ-HEKD----LKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMI  277 (324)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCCSCS-SGGG----HHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             hhhhhhHHHHhccCCCCchhcCCccccC-CHHH----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHH
Confidence            6654332222246789999999999885 3332    2222334556778899999999999998887631 1223  22


Q ss_pred             HHHHHhCCcEEE--EEeeCCCCCCCC
Q 014642          179 EELARKHSLLRL--DCVQFRKEDYPG  202 (421)
Q Consensus       179 ~~LAa~aGL~L~--~~~~F~~~~YPG  202 (421)
                      .+.+.++|-.+.  +.....+.|+|-
T Consensus       278 ~~a~~~~gr~~~~~~~~~~~~~DhP~  303 (324)
T d2as0a2         278 IAAGAKAGKFLKMLEPYRTQAPDHPI  303 (324)
T ss_dssp             HHHHHHTTEEEEESSCBBCSCTTSCC
T ss_pred             HHHHHHcCCeEEEeeecCCCCCCCCC
Confidence            345566774444  444557777773

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.49  E-value=7.3e-05  Score=64.46  Aligned_cols=108  Identities=21%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~~  115 (421)
                      +..+||=||=|.=.+|++|++..   .+++++-++ ...+    ..+..|++...-.+..| +..-|+.+     .+...
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s-~~~i----~~a~~n~~~~~l~~~~i~~~~~d~~~-----~~~~~  118 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEV---KSTTMADIN-RRAI----KLAKENIKLNNLDNYDIRVVHSDLYE-----NVKDR  118 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESC-HHHH----HHHHHHHHHTTCTTSCEEEEECSTTT-----TCTTS
T ss_pred             CCCeEEEEeecCChhHHHHHhhc---cccceeeec-cccc----hhHHHHHHHhCCccceEEEEEcchhh-----hhccC
Confidence            46799999999999999998753   478887665 2222    23666765543223222 22234432     23467


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .||.|+.|.|.-..             ...+..+++.+..+|+|+|.++|.+...
T Consensus       119 ~fD~Ii~~~p~~~~-------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         119 KYNKIITNPPIRAG-------------KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             CEEEEEECCCSTTC-------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             CceEEEEcccEEec-------------chhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            89999999995431             2345678999999999999988866544

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.18  E-value=0.00065  Score=62.35  Aligned_cols=128  Identities=15%  Similarity=0.141  Sum_probs=88.5

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      .....+.+||=+|=|-=+||+.+|+. + +..|+|.-.+.. .    +.-+++|++...=.+....+.-||.++..    
T Consensus       103 ~~~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~-a----~~~~~~N~~~n~l~~~v~~~~~D~~~~~~----  171 (260)
T d2frna1         103 KVAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPY-T----FKFLVENIHLNKVEDRMSAYNMDNRDFPG----  171 (260)
T ss_dssp             HHCCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHH-H----HHHHHHHHHHTTCTTTEEEECSCTTTCCC----
T ss_pred             hhcCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHH-H----HHHHHHHHHHhCCCceEEEEEcchHHhcc----
Confidence            44567889999999999999998876 3 457888877642 2    23466777654433433445669988643    


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC-CCCcCcccHH---HHHHhCCcE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT-TAPFCKWHIE---ELARKHSLL  188 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-g~PY~sWnI~---~LAa~aGL~  188 (421)
                       ...||+||.|-|+.+.                  .|+..|..+|++||-||+.... ..-...|.++   ++++..|+.
T Consensus       172 -~~~~D~Ii~~~p~~~~------------------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~  232 (260)
T d2frna1         172 -ENIADRILMGYVVRTH------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD  232 (260)
T ss_dssp             -CSCEEEEEECCCSSGG------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred             -CCCCCEEEECCCCchH------------------HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCc
Confidence             4679999999997652                  4666788899999999986432 2223455543   578888887


Q ss_pred             EE
Q 014642          189 RL  190 (421)
Q Consensus       189 L~  190 (421)
                      +.
T Consensus       233 v~  234 (260)
T d2frna1         233 VE  234 (260)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=0.00018  Score=67.68  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=96.8

Q ss_pred             cccceeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCC
Q 014642           26 KEEEKWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATE  105 (421)
Q Consensus        26 ~~~~K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATk  105 (421)
                      .++..|+... .+++||=++-|-=+||.++|+.   +..|+|  .|.-+...+   .++.|++...-.++ .....|+.+
T Consensus       135 r~~r~~~~~~-~g~rVLDl~~gtG~~s~~~a~g---~~~V~~--vD~s~~al~---~a~~n~~~ngl~~~-~~i~~d~~~  204 (318)
T d1wxxa2         135 RENRLYMERF-RGERALDVFSYAGGFALHLALG---FREVVA--VDSSAEALR---RAEENARLNGLGNV-RVLEANAFD  204 (318)
T ss_dssp             HHHHHHGGGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEE--EESCHHHHH---HHHHHHHHTTCTTE-EEEESCHHH
T ss_pred             hhhHHHHHHh-CCCeeeccCCCCcHHHHHHHhc---CCcEEe--ecchHHHHH---HHHHHHHHcCCCCc-ceeeccHHH
Confidence            3455666544 5789999988888888888753   346655  554333333   36667654321123 344667766


Q ss_pred             cCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCcc--cHHHHH
Q 014642          106 MKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCKW--HIEELA  182 (421)
Q Consensus       106 L~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~sW--nI~~LA  182 (421)
                      ..+...-...+||.||.|-|-.+. ++.+.    ..-.......+..|..+|+|||.|.++.|...- ...|  -|.+.+
T Consensus       205 ~~~~~~~~~~~fD~Vi~DpP~~~~-~~~~~----~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~  279 (318)
T d1wxxa2         205 LLRRLEKEGERFDLVVLDPPAFAK-GKKDV----ERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAA  279 (318)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCC-STTSH----HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhhhhHhhhcCCCEEEEcCCcccc-chHHH----HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHH
Confidence            544333346789999999999885 54432    222333456677889999999999998887531 1222  233455


Q ss_pred             HhCC--cEEEEEeeCCCCCCC
Q 014642          183 RKHS--LLRLDCVQFRKEDYP  201 (421)
Q Consensus       183 a~aG--L~L~~~~~F~~~~YP  201 (421)
                      ..+|  +.++... -.+.|+|
T Consensus       280 ~~a~~~~~~~~~~-~~~~DhP  299 (318)
T d1wxxa2         280 QDAHRLLRVVEKR-GQPFDHP  299 (318)
T ss_dssp             HHTTCCEEEEEEE-CCCTTSC
T ss_pred             HHcCCCEEEEEec-CCCCCCC
Confidence            5666  4544432 2344555

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.89  E-value=0.00074  Score=59.84  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=70.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~~  115 (421)
                      ++.+||=||=|.=.++..|++.-  ..++++.=.. ++.+.    .|.+....++. +..| .+-.|+......   ..+
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S-~~~l~----~A~~r~~~~~~-~~~v~f~~~D~~~~~~~---~~~   92 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIA-EVSIN----DARVRARNMKR-RFKVFFRAQDSYGRHMD---LGK   92 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESC-HHHHH----HHHHHHHTSCC-SSEEEEEESCTTTSCCC---CSS
T ss_pred             CcCEEEEecccCcHHHHHHHHcC--CCeEEEecCC-HHHHH----HHHHHHHhcCC-CcceEEEEcchhhhccc---ccc
Confidence            46799999999888888888762  3467665444 33332    23333333322 2234 445677655322   357


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      .||.|+.+|=---          +-.+.+-+..+|+++..+|+|||.+.+|..
T Consensus        93 ~fD~V~~~~~l~~----------~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          93 EFDVISSQFSFHY----------AFSTSESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CEEEEEEESCGGG----------GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cceEEEEcceeee----------cCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence            8999998872111          112456678999999999999999988754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.77  E-value=0.0069  Score=54.36  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=95.6

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      +..++++||=+|=|.=.++..||+..|..-.|+|.-+..  ...+   ++..   ..++.+..+..-.|+........ .
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~--~~l~---~a~~---~a~~~~~~~~i~~d~~~~~~~~~-~  140 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLR---ELVP---IVEERRNIVPILGDATKPEEYRA-L  140 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHH---HHHH---HHSSCTTEEEEECCTTCGGGGTT-T
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH--HHHH---HHHH---HHHhcCCceEEEEECCCcccccc-c
Confidence            566789999999999999999999998767899876653  2222   2322   34455655555567777665432 3


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc---Ccc----cHHHHHHhCC
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF---CKW----HIEELARKHS  186 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY---~sW----nI~~LAa~aG  186 (421)
                      ...+|.|+.++||...                ...++.+|..+|+++|.+.|.++....-   ...    .++++. +.|
T Consensus       141 ~~~vD~i~~d~~~~~~----------------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~g  203 (227)
T d1g8aa_         141 VPKVDVIFEDVAQPTQ----------------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY  203 (227)
T ss_dssp             CCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT
T ss_pred             ccceEEEEEEccccch----------------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcC
Confidence            4679999999999862                2357889999999999999988643110   111    223332 459


Q ss_pred             cEEEEEeeCCC
Q 014642          187 LLRLDCVQFRK  197 (421)
Q Consensus       187 L~L~~~~~F~~  197 (421)
                      |.+.+.+...+
T Consensus       204 f~iie~i~L~p  214 (227)
T d1g8aa_         204 FEVIERLNLEP  214 (227)
T ss_dssp             SEEEEEEECTT
T ss_pred             CEEEEEEcCCC
Confidence            99999876554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.56  E-value=0.0021  Score=60.47  Aligned_cols=163  Identities=17%  Similarity=0.138  Sum_probs=94.9

Q ss_pred             ccccce-eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC--CEEEeec
Q 014642           25 EKEEEK-WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG--ASIIHGV  101 (421)
Q Consensus        25 ~~~~~K-~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G--v~VlhgV  101 (421)
                      ..++.. ++..++.+++||=+.=|-=.||++++..  .+..+++.-.+.. .+    ..++.|++ +..++  -.-+..-
T Consensus       131 qR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~-a~----~~a~~N~~-~n~l~~~~~~~i~~  202 (317)
T d2b78a2         131 QRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKR-SR----ALSLAHFE-ANHLDMANHQLVVM  202 (317)
T ss_dssp             GHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTT-HH----HHHHHHHH-HTTCCCTTEEEEES
T ss_pred             HHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHH-HH----HHHHHHHH-HhcccCcceEEEEc
Confidence            344544 4588999999988877777777776653  3445666544422 22    13556654 33322  1224455


Q ss_pred             ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-cCc--ccH
Q 014642          102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-FCK--WHI  178 (421)
Q Consensus       102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-Y~s--WnI  178 (421)
                      ||-+.-+.....+.+||.||.|=|-.+. ++++.....+.+++|    ++.|.++|+|||.+.++.|...- .+.  ..|
T Consensus       203 d~~~~l~~~~~~~~~fD~Ii~DPP~f~~-~~~~~~~~~~~~~~L----~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v  277 (317)
T d2b78a2         203 DVFDYFKYARRHHLTYDIIIIDPPSFAR-NKKEVFSVSKDYHKL----IRQGLEILSENGLIIASTNAANMTVSQFKKQI  277 (317)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEECCCCC------CCCCHHHHHHHH----HHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cHHHHHHHHHhhcCCCCEEEEcChhhcc-chhHHHHHHHHHHHH----HHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence            6644322222245789999999997763 333333344445444    56688899999999998887531 111  234


Q ss_pred             HHHHHhCCcEEEEEeeCCCCCCC
Q 014642          179 EELARKHSLLRLDCVQFRKEDYP  201 (421)
Q Consensus       179 ~~LAa~aGL~L~~~~~F~~~~YP  201 (421)
                      .+.+...+..+..... .+.|+|
T Consensus       278 ~~a~~~~~~~~~~~~~-~~~DfP  299 (317)
T d2b78a2         278 EKGFGKQKHTYLDLQQ-LPSDFA  299 (317)
T ss_dssp             HHHHTTCCCEEEEEEC-CCTTSC
T ss_pred             HHHHHHcCCeEEEecc-CCCCCC
Confidence            5566677887766543 355676

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0028  Score=54.85  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||=|.=.++..|++..+  .+|++  .|--+++++.   |++++.......+ -++..|++++.    +...
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~--vD~s~~~l~~---ak~~~~~~~~~~~-~f~~~d~~~~~----~~~~  126 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLF--REVDM--VDITEDFLVQ---AKTYLGEEGKRVR-NYFCCGLQDFT----PEPD  126 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTC--SEEEE--EESCHHHHHH---HHHHTGGGGGGEE-EEEECCGGGCC----CCSS
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcC--CEEEE--eecCHHHhhc---ccccccccccccc-ccccccccccc----cccc
Confidence            4567999999999999998876643  35555  5633333332   4444332221122 34566888874    3468


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec---CCCC---------cCcccHHHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK---TTAP---------FCKWHIEELAR  183 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk---~g~P---------Y~sWnI~~LAa  183 (421)
                      .||.|+.++= +....           ..-+..+++.+..+|+|+|.|.|+-.   ++..         ++...+.++.+
T Consensus       127 ~fD~I~~~~~-l~h~~-----------~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (222)
T d2ex4a1         127 SYDVIWIQWV-IGHLT-----------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC  194 (222)
T ss_dssp             CEEEEEEESC-GGGSC-----------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred             cccccccccc-cccch-----------hhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence            9999998762 22101           12246789999999999999988732   2211         13345678999


Q ss_pred             hCCcEEEEEee
Q 014642          184 KHSLLRLDCVQ  194 (421)
Q Consensus       184 ~aGL~L~~~~~  194 (421)
                      ++||.+++...
T Consensus       195 ~aGf~ii~~~~  205 (222)
T d2ex4a1         195 SAGLSLLAEER  205 (222)
T ss_dssp             HTTCCEEEEEE
T ss_pred             HcCCEEEEEEE
Confidence            99999887643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.48  E-value=0.013  Score=52.55  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .|+...+||=||=|.=.++..|++++.   ++.+|.+|-.+.+ +   .+..++....-.+......-|..+  .   + 
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P---~~~~~~~Dlp~~~-~---~a~~~~~~~~~~~ri~~~~~d~~~--~---~-  144 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP---HLRGTLVELAGPA-E---RARRRFADAGLADRVTVAEGDFFK--P---L-  144 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT---TCEEEEEECHHHH-H---HHHHHHHHTTCTTTEEEEECCTTS--C---C-
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc---CcEEEEecChHHH-H---HHHHHHhhcCCcceeeeeeeeccc--c---c-
Confidence            467778999999999999999999973   5667778864433 2   255555543322323333334432  1   1 


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC------------------------
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT------------------------  169 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~------------------------  169 (421)
                      ...||.|++.+=.-.. .           .+=...+++++.+.|+|+|.|.|.=..                        
T Consensus       145 p~~~D~v~~~~vLh~~-~-----------d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~  212 (256)
T d1qzza2         145 PVTADVVLLSFVLLNW-S-----------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG  212 (256)
T ss_dssp             SCCEEEEEEESCGGGS-C-----------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS
T ss_pred             cccchhhhcccccccc-C-----------cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCC
Confidence            2459999987532111 1           111346788899999999998886321                        


Q ss_pred             CCCcCcccHHHHHHhCCcEEEEEeeCCCCCCC
Q 014642          170 TAPFCKWHIEELARKHSLLRLDCVQFRKEDYP  201 (421)
Q Consensus       170 g~PY~sWnI~~LAa~aGL~L~~~~~F~~~~YP  201 (421)
                      |.+++.=++.++.+++||.+++..++.....|
T Consensus       213 g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~  244 (256)
T d1qzza2         213 GRVRTRDEVVDLAGSAGLALASERTSGSTTLP  244 (256)
T ss_dssp             CCCCCHHHHHHHHHTTTEEEEEEEEECCSSCS
T ss_pred             CccCCHHHHHHHHHHCCCceeEEEEeCCcCcc
Confidence            11122224568899999999999888766555

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.036  Score=51.21  Aligned_cols=143  Identities=12%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      .-.++++||=||=|-=+++.-+|+.+|  .++|+.++..+ ++.    .+.+.+   ++.|......++..+..    ..
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~-q~~----~a~~~~---~~~~l~~~v~~~~~d~~----~~  123 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSEN-QYA----HDKAMF---DEVDSPRRKEVRIQGWE----EF  123 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHH-HHH----HHHHHH---HHSCCSSCEEEEECCGG----GC
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHH-HHH----HHHHHH---Hhhccchhhhhhhhccc----cc
Confidence            346789999999999999999999985  47777666533 221    233333   33343222222222221    22


Q ss_pred             cCcccEEEEc--CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC---C---------CCc------
Q 014642          114 KRKFDRIIFN--FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT---T---------APF------  173 (421)
Q Consensus       114 ~~~FDrIIFN--FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~---g---------~PY------  173 (421)
                      ..+||+|+..  |-|+|......       ..+=...||+.+..+|+|||.+.|....   .         .|.      
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~-------~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~  196 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDA-------GFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFI  196 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCC-------STTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHH
T ss_pred             ccccceEeechhHHhcchhhhhh-------HHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccc
Confidence            4789999864  88988532211       1222568999999999999997764321   1         110      


Q ss_pred             --------------CcccHHHHHHhCCcEEEEEeeCCC
Q 014642          174 --------------CKWHIEELARKHSLLRLDCVQFRK  197 (421)
Q Consensus       174 --------------~sWnI~~LAa~aGL~L~~~~~F~~  197 (421)
                                    +.-.+..+++++||.+.....+..
T Consensus       197 ~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~  234 (291)
T d1kpia_         197 KFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA  234 (291)
T ss_dssp             HHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             hHHHHHhcCCCCCCCHHHHHhhhcccccccceeeeccc
Confidence                          122455678889999998877753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.0067  Score=55.40  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++++||=+|=|.=++|.+||+..+....|++.-.+  ++..+   .|++|++.....+ +.+.+ -|+.++     +..
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~--e~~~~---~A~~n~~~~~~~~nv~~~~-~Di~~~-----~~~  152 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLK---KAMDNLSEFYDIGNVRTSR-SDIADF-----ISD  152 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHH---HHHHHHHTTSCCTTEEEEC-SCTTTC-----CCS
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECC--HHHHH---HHHHHHHHhcCCCceEEEE-eeeecc-----ccc
Confidence            567899999999999999999998766677776554  33333   4777776543333 44444 466553     335


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEee
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQ  194 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~  194 (421)
                      ..||+|+.|.|..-                   .++..+..+|+|||.+.+...+-+.. + .+.+..+++|+...+...
T Consensus       153 ~~fD~V~ld~p~p~-------------------~~l~~~~~~LKpGG~lv~~~P~i~Qv-~-~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         153 QMYDAVIADIPDPW-------------------NHVQKIASMMKPGSVATFYLPNFDQS-E-KTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             CCEEEEEECCSCGG-------------------GSHHHHHHTEEEEEEEEEEESSHHHH-H-HHHHHSGGGTEEEEEEEE
T ss_pred             ceeeeeeecCCchH-------------------HHHHHHHHhcCCCceEEEEeCCcChH-H-HHHHHHHHCCCceeEEEE
Confidence            77999999987542                   46788999999999998765542110 1 122233457887666544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.13  E-value=0.018  Score=51.43  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      ....+||=||=|.=.+|..|+..+.  .+|++.  |.-+.+.++   |+++   +...+..-.+..|+.++.    +...
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~v--D~s~~~l~~---a~~~---~~~~~~~~~~~~d~~~~~----~~~~  157 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLL--EPVKHMLEE---AKRE---LAGMPVGKFILASMETAT----LPPN  157 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEE--ESCHHHHHH---HHHH---TTTSSEEEEEESCGGGCC----CCSS
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEE--cCCHHHHHh---hhcc---ccccccceeEEccccccc----cCCC
Confidence            3466999999999999999887653  356554  544444432   3322   223333223456666653    3468


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec--CCC-C-----c-----CcccHHHHH
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK--TTA-P-----F-----CKWHIEELA  182 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk--~g~-P-----Y-----~sWnI~~LA  182 (421)
                      .||.|+.+....-.   .         ..-+..||+.|..+|+|+|.|.|.-.  ... +     .     +.-.++++.
T Consensus       158 ~fD~I~~~~vl~hl---~---------d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~  225 (254)
T d1xtpa_         158 TYDLIVIQWTAIYL---T---------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             CEEEEEEESCGGGS---C---------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             ccceEEeecccccc---c---------hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHH
Confidence            89999998753211   1         11246899999999999999988642  211 0     1     112577899


Q ss_pred             HhCCcEEEEEee---CCCCCCCC
Q 014642          183 RKHSLLRLDCVQ---FRKEDYPG  202 (421)
Q Consensus       183 a~aGL~L~~~~~---F~~~~YPG  202 (421)
                      +++||.+++...   |..+.||-
T Consensus       226 ~~aGf~ii~~~~q~~fP~~l~~V  248 (254)
T d1xtpa_         226 NESGVRVVKEAFQEEWPTDLFPL  248 (254)
T ss_dssp             HHHTCCEEEEEECTTCCTTSCCE
T ss_pred             HHcCCEEEEEEeeCCCCccceEE
Confidence            999999987754   55455553

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.88  E-value=0.037  Score=48.80  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSE  111 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~  111 (421)
                      ..++...+||=||=|.=.++..|++++.   ++.+|.+|..+.+ +   .+..++....-. .+.+ ..-|+.+.     
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p---~~~~~~~D~~~~~-~---~a~~~~~~~~~~~rv~~-~~~D~~~~-----  142 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEMAGTV-D---TARSYLKDEGLSDRVDV-VEGDFFEP-----  142 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEECTTHH-H---HHHHHHHHTTCTTTEEE-EECCTTSC-----
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHhcc---eeEEEEccCHHHH-H---HHHHHHHHhhcccchhh-ccccchhh-----
Confidence            3567778999999999999999999873   4566777754333 2   244444432211 1333 33355331     


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-------------------
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-------------------  172 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-------------------  172 (421)
                       ....||.|++++=.--. .           .+-...+++++.+.|+|+|.|.|.-....+                   
T Consensus       143 -~~~~~D~v~~~~vlh~~-~-----------d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~  209 (253)
T d1tw3a2         143 -LPRKADAIILSFVLLNW-P-----------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL  209 (253)
T ss_dssp             -CSSCEEEEEEESCGGGS-C-----------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH
T ss_pred             -cccchhheeeccccccC-C-----------chhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhC
Confidence             12569999977422111 0           111236788899999999999886432211                   


Q ss_pred             ----cCcccHHHHHHhCCcEEEEEeeCCCC
Q 014642          173 ----FCKWHIEELARKHSLLRLDCVQFRKE  198 (421)
Q Consensus       173 ----Y~sWnI~~LAa~aGL~L~~~~~F~~~  198 (421)
                          ++.=++.++.+++||.+++...+...
T Consensus       210 ~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p  239 (253)
T d1tw3a2         210 GGALRTREKWDGLAASAGLVVEEVRQLPSP  239 (253)
T ss_dssp             SCCCCBHHHHHHHHHHTTEEEEEEEEEECS
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence                11113346888999999988776543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.78  E-value=0.025  Score=47.16  Aligned_cols=108  Identities=20%  Similarity=0.331  Sum_probs=70.2

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++.+||=||=|.=.++..|++.   +.+|+|+  |--+++.+.   |++++.... ..+..+. -|+++|.    +..+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~gi--D~S~~~i~~---ak~~~~~~~-~~~~~~~-~d~~~l~----~~~~  101 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGV--DISEDMIRK---AREYAKSRE-SNVEFIV-GDARKLS----FEDK  101 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEE--ESCHHHHHH---HHHHHHHTT-CCCEEEE-CCTTSCC----SCTT
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccc--cccccchhh---hhhhhcccc-ccccccc-ccccccc----ccCc
Confidence            45679999999999999999975   3467765  432333332   333333221 2344444 4888874    4468


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.++   ..   +    .+ .... +..+|+++..+|+|||.+.|+..+
T Consensus       102 ~fD~I~~~~---~l---~----~~-~~~d-~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         102 TFDYVIFID---SI---V----HF-EPLE-LNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CEEEEEEES---CG---G----GC-CHHH-HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CceEEEEec---ch---h----hC-ChhH-HHHHHHHHHHHcCcCcEEEEEEcC
Confidence            899999875   11   0    00 0112 457899999999999999887654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.023  Score=49.74  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||-||=|.=.+|..||+..+....|++.-.+  +++.+   .++.|++...-.++.+.++ |+.+..    ...
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~--~~~~~---~a~~~~~~~~~~n~~~~~~-d~~~~~----~~~  142 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICE---IAKRNVERLGIENVIFVCG-DGYYGV----PEF  142 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GGG
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecc--hhhHH---HhhhhHhhhcccccccccC-chHHcc----ccc
Confidence            4678899999999999999999998765567765544  33433   3667776655555655553 554432    234


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      ..||+|+.++-.--.            -..        ..+.|+|||.+.+.+.
T Consensus       143 ~~fD~I~~~~~~~~~------------p~~--------l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEV------------PET--------WFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             CCEEEEEECSBBSCC------------CHH--------HHHHEEEEEEEEEEBC
T ss_pred             cchhhhhhhccHHHh------------HHH--------HHHhcCCCcEEEEEEC
Confidence            679999987632111            011        2246999999988653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.027  Score=53.08  Aligned_cols=133  Identities=16%  Similarity=0.170  Sum_probs=82.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-----------CCEEEeeccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-----------GASIIHGVDA  103 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-----------Gv~VlhgVDA  103 (421)
                      -.++++||=+|=|.=++|++||+..+..-.|++  +|-.++..+   .|+.|++.....           ++.+.++ |+
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t--~E~~~~~~~---~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~-di  169 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVDFIHK-DI  169 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEEEEES-CT
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEE--ecCCHHHHH---HHHHHHHHhhhhhhhhhhhccccceeEEec-ch
Confidence            356889999999999999999999876555664  565454443   477888875421           2333333 54


Q ss_pred             CCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHH
Q 014642          104 TEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELAR  183 (421)
Q Consensus       104 TkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa  183 (421)
                      .....  .+....||+|+.+-|..-                   ..+..+..+|+|||.+.+-+.+-+  .-+.+.+.-+
T Consensus       170 ~~~~~--~~~~~~fD~V~LD~p~P~-------------------~~l~~~~~~LKpGG~lv~~~P~i~--Qv~~~~~~l~  226 (324)
T d2b25a1         170 SGATE--DIKSLTFDAVALDMLNPH-------------------VTLPVFYPHLKHGGVCAVYVVNIT--QVIELLDGIR  226 (324)
T ss_dssp             TCCC---------EEEEEECSSSTT-------------------TTHHHHGGGEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             hhccc--ccCCCCcceEeecCcCHH-------------------HHHHHHHHhccCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            44322  234578999999888642                   245678899999999888664332  1223333222


Q ss_pred             --hCCcEEEEEeeCC
Q 014642          184 --KHSLLRLDCVQFR  196 (421)
Q Consensus       184 --~aGL~L~~~~~F~  196 (421)
                        +.++..++.+.--
T Consensus       227 ~~~~~f~~i~~~E~~  241 (324)
T d2b25a1         227 TCELALSCEKISEVI  241 (324)
T ss_dssp             HHTCCEEEEEEECCC
T ss_pred             HcCCCceeeEEEEEE
Confidence              3467777765443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=95.33  E-value=0.022  Score=48.19  Aligned_cols=107  Identities=16%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      .+..++++||=||=|.=.|+..|++..   .+|+|.-++ .+ ..+   .|+.+++...-.++.++ .-|+++|.    +
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s-~~-~i~---~A~~~~~~~~~~~i~~~-~~d~~~l~----~   77 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLT-ED-ILK---VARAFIEGNGHQQVEYV-QGDAEQMP----F   77 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESC-HH-HHH---HHHHHHHHTTCCSEEEE-ECCC-CCC----S
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECC-HH-HHh---hhhhccccccccccccc-cccccccc----c
Confidence            456778999999999999999999763   356655332 33 332   25555555443345544 34777763    4


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ..+.||.|+.++=  -. -..|           ...+|+.+..+|+|||.+.|.
T Consensus        78 ~~~~fD~v~~~~~--l~-~~~d-----------~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          78 TDERFHIVTCRIA--AH-HFPN-----------PASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             CTTCEEEEEEESC--GG-GCSC-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccccccc--cc-ccCC-----------HHHHHHHHHHhcCCCcEEEEE
Confidence            4688999987752  11 0011           347899999999999998875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.13  E-value=0.14  Score=45.37  Aligned_cols=139  Identities=16%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      .+..++.+||=||=|.=.++..||+.. ....|+|--+.  ..+.+.   +.+   ..++.+..+..-.|+........ 
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS--~~~i~~---a~~---~a~~~~ni~~i~~d~~~~~~~~~-  139 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYA--PRIMRE---LLD---ACAERENIIPILGDANKPQEYAN-  139 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESC--HHHHHH---HHH---HTTTCTTEEEEECCTTCGGGGTT-
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCc--HHHHHH---HHH---HHhhhcccceEEEeeccCccccc-
Confidence            467788999999999999999999874 34467766444  222221   211   12334555555667776654432 


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC------CcCcc-cHHHHHHhC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA------PFCKW-HIEELARKH  185 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~------PY~sW-nI~~LAa~a  185 (421)
                      ....+|.|+.++.|...                ...++.++..+|+|+|.+.|.++...      |.... ++++.-+.+
T Consensus       140 ~~~~v~~i~~~~~~~~~----------------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~a  203 (230)
T d1g8sa_         140 IVEKVDVIYEDVAQPNQ----------------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAG  203 (230)
T ss_dssp             TCCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHH
T ss_pred             ccceeEEeeccccchHH----------------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHc
Confidence            12345556555665541                24578889999999999999876432      11111 234556678


Q ss_pred             CcEEEEEeeCCC
Q 014642          186 SLLRLDCVQFRK  197 (421)
Q Consensus       186 GL~L~~~~~F~~  197 (421)
                      ||.+++.+.+.+
T Consensus       204 GF~ive~idL~p  215 (230)
T d1g8sa_         204 GFKIVDEVDIEP  215 (230)
T ss_dssp             TEEEEEEEECTT
T ss_pred             CCEEEEEecCCC
Confidence            999999987654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.07  E-value=0.087  Score=48.91  Aligned_cols=142  Identities=20%  Similarity=0.246  Sum_probs=90.6

Q ss_pred             CeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCccc
Q 014642           39 HQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKFD  118 (421)
Q Consensus        39 ~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~FD  118 (421)
                      ++||=+-=|-=.=|..|+...+....|+|.-.+.     .+......|++.+.-.++ +...-|++.+..    ....||
T Consensus       118 ~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~-----~r~~~l~~~~~r~~~~~i-~~~~~d~~~~~~----~~~~fD  187 (313)
T d1ixka_         118 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE-----NRLRETRLNLSRLGVLNV-ILFHSSSLHIGE----LNVEFD  187 (313)
T ss_dssp             CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH-----HHHHHHHHHHHHHTCCSE-EEESSCGGGGGG----GCCCEE
T ss_pred             ceeeecccchhhhhHhhhhhcccccceeeeccCH-----HHHHHHHHHHHHHHhhcc-cccccccccccc----cccccc
Confidence            3443333333333444555544445677765542     222334556555544343 555567777643    246899


Q ss_pred             EEEEcCCCCCCCCCc---------ccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCc-CcccHHHHHHhCCcE
Q 014642          119 RIIFNFPHAGFHGKE---------EDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPF-CKWHIEELARKHSLL  188 (421)
Q Consensus       119 rIIFNFPH~G~~GkE---------d~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY-~sWnI~~LAa~aGL~  188 (421)
                      +|+-+=|+.|. |.-         .....+.....+=...+.+|..+|++||.|.-+.|+-.|- |.+.|..+.++.++.
T Consensus       188 ~ILvDaPCSg~-G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~  266 (313)
T d1ixka_         188 KILLDAPCTGS-GTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE  266 (313)
T ss_dssp             EEEEECCTTST-TTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred             EEEEccccccC-CceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence            99999999995 311         1234566666777788899999999999999999998775 556666677777776


Q ss_pred             EEE
Q 014642          189 RLD  191 (421)
Q Consensus       189 L~~  191 (421)
                      ++.
T Consensus       267 ~~~  269 (313)
T d1ixka_         267 LLP  269 (313)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            664

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.98  E-value=0.12  Score=45.00  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=87.2

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      .+..++++||=||=|.=.++..|++..+.+ .|+|  .|-.+...+   .+..+   .++.+-.+..-.|+........ 
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g-~V~g--vDis~~~i~---~a~~~---a~~~~ni~~i~~d~~~~~~~~~-  121 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYA--VEYSAKPFE---KLLEL---VRERNNIIPLLFDASKPWKYSG-  121 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTS-EEEE--ECCCHHHHH---HHHHH---HHHCSSEEEECSCTTCGGGTTT-
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCC-eEEE--EeCCHHHHH---HHHHH---hhccCCceEEEeeccCcccccc-
Confidence            356678999999999999999999987543 5555  553333333   13223   3344544555567777655432 


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC---CC-cCcccHHHHHH--hCC
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT---AP-FCKWHIEELAR--KHS  186 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g---~P-Y~sWnI~~LAa--~aG  186 (421)
                      ....+|.|.-+++|...                ...|+.++..+|+|+|.+.|..+..   .+ -..+.+....+  ++|
T Consensus       122 ~~~~vd~v~~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~g  185 (209)
T d1nt2a_         122 IVEKVDLIYQDIAQKNQ----------------IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD  185 (209)
T ss_dssp             TCCCEEEEEECCCSTTH----------------HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred             ccceEEEEEecccChhh----------------HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcC
Confidence            23457777677888752                1357888999999999999988531   11 11222322222  469


Q ss_pred             cEEEEEeeCC
Q 014642          187 LLRLDCVQFR  196 (421)
Q Consensus       187 L~L~~~~~F~  196 (421)
                      |.+.+.....
T Consensus       186 f~i~E~i~L~  195 (209)
T d1nt2a_         186 FKIVKHGSLM  195 (209)
T ss_dssp             SEEEEEEECT
T ss_pred             CEEEEEEccC
Confidence            9999887543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.84  E-value=0.11  Score=47.56  Aligned_cols=134  Identities=18%  Similarity=0.243  Sum_probs=85.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||=||=|-=++++-+|+.+|  ..|++-+...+ ++.    .+.+.+++..-.+-..+.-.|...+.       
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~-Q~~----~a~~~~~~~g~~~~v~~~~~d~~~~~-------  125 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKN-QAN----HVQQLVANSENLRSKRVLLAGWEQFD-------  125 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHH-HHH----HHHHHHHTCCCCSCEEEEESCGGGCC-------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHH-HHH----HHHHHHHhhhhhhhhHHHHhhhhccc-------
Confidence            46789999999999999999999985  47777776542 221    23333333222222223334655442       


Q ss_pred             CcccEEEE--cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC-CC---------CcC-------c
Q 014642          115 RKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT-TA---------PFC-------K  175 (421)
Q Consensus       115 ~~FDrIIF--NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~-g~---------PY~-------s  175 (421)
                      ..||+|+-  -|=|+|.+           |   ...||+.+..+|+|+|.+.|.... ..         |+.       .
T Consensus       126 ~~fD~i~si~~~eh~~~~-----------~---~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  191 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGHE-----------R---YDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLK  191 (285)
T ss_dssp             CCCSEEEEESCGGGTCTT-----------T---HHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHH
T ss_pred             ccccceeeehhhhhcCch-----------h---HHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhh
Confidence            57999864  57777631           1   346999999999999997653221 11         110       1


Q ss_pred             c---------------cHHHHHHhCCcEEEEEeeCC
Q 014642          176 W---------------HIEELARKHSLLRLDCVQFR  196 (421)
Q Consensus       176 W---------------nI~~LAa~aGL~L~~~~~F~  196 (421)
                      |               .+..++..+||.+.+...+.
T Consensus       192 fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         192 FIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHhccCCCCCChhhHHHHHHHhchhhcccccch
Confidence            1               34467888999999887775

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.045  Score=49.87  Aligned_cols=129  Identities=16%  Similarity=0.265  Sum_probs=84.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=+|=|.=++|..||+..++...|++  +|-.++..+   .|++|++...-.. .|.  +...++..  .+...
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~--vD~~~~~~~---~A~~~~~~~g~~~-~v~--~~~~d~~~--~~~~~  171 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFA--YEKREEFAK---LAESNLTKWGLIE-RVT--IKVRDISE--GFDEK  171 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEE--ECCCHHHHH---HHHHHHHHTTCGG-GEE--EECCCGGG--CCSCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEE--EeCCHHHHH---HHHHHHHHhcccc-CcE--EEeccccc--ccccc
Confidence            57889999999999999999999875556664  454344433   4677766543211 121  12222222  23457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEeeC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .||.|+.+.|..                   ..++..+..+|+|||.+.+...+-+  .--.+.+..++.|+...+...-
T Consensus       172 ~~D~V~~d~p~p-------------------~~~l~~~~~~LKpGG~lv~~~P~~~--Qv~~~~~~l~~~gF~~i~~~E~  230 (266)
T d1o54a_         172 DVDALFLDVPDP-------------------WNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWES  230 (266)
T ss_dssp             SEEEEEECCSCG-------------------GGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEECC
T ss_pred             ceeeeEecCCCH-------------------HHHHHHHHhhcCCCCEEEEEeCccc--HHHHHHHHHHHCCceeEEEEEE
Confidence            799999887753                   2578889999999999988764322  1224455667789988777653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.026  Score=52.07  Aligned_cols=137  Identities=17%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=+|=|.=--+++||.... ...++|+-.. .+.+    .-|+.|++.+.-..+.++.+ |   +-.  .+...+|
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis-~~Al----~~A~~Na~~~~~~~v~~~~~-d---~~~--~~~~~~f  176 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERP-DCEIIAVDRM-PDAV----SLAQRNAQHLAIKNIHILQS-D---WFS--ALAGQQF  176 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSS-HHHH----HHHHHHHHHHTCCSEEEECC-S---TTG--GGTTCCE
T ss_pred             ccceeeeehhhhHHHHHHHhhCC-cceeeeccch-hHHH----hHHHHHHHHhCcccceeeec-c---ccc--ccCCCce
Confidence            46899999999999999998874 4567776543 3333    24778888776444554443 2   211  2345789


Q ss_pred             cEEEEcCCCCCCCCCcccHHHH-----------HHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCC
Q 014642          118 DRIIFNFPHAGFHGKEEDDEVI-----------RMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHS  186 (421)
Q Consensus       118 DrIIFNFPH~G~~GkEd~~~~I-----------~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aG  186 (421)
                      |.||.|=|-+...-.+.....+           ..-...+..++..|.++|+++|.+.+-+-..   ..=.|.+++++.|
T Consensus       177 DlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~---q~~~v~~~l~~~g  253 (274)
T d2b3ta1         177 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---QGEAVRQAFILAG  253 (274)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---CHHHHHHHHHHTT
T ss_pred             eEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch---HHHHHHHHHHHCC
Confidence            9999999988631100000000           0113567889999999999999999976332   2235777888888


Q ss_pred             cEE
Q 014642          187 LLR  189 (421)
Q Consensus       187 L~L  189 (421)
                      +..
T Consensus       254 f~~  256 (274)
T d2b3ta1         254 YHD  256 (274)
T ss_dssp             CTT
T ss_pred             CCe
Confidence            753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.043  Score=45.97  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=82.0

Q ss_pred             eeeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642           30 KWIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH  109 (421)
Q Consensus        30 K~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~  109 (421)
                      +.+..+.+..+||=||=|.=.|+..|++       ++  +.|--..+          ++..++.++.+ +.-|+.+|.  
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~-------~~--giD~s~~~----------~~~a~~~~~~~-~~~d~~~l~--   86 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLKI-------KI--GVEPSERM----------AEIARKRGVFV-LKGTAENLP--   86 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTC-------CE--EEESCHHH----------HHHHHHTTCEE-EECBTTBCC--
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccce-------EE--EEeCChhh----------ccccccccccc-ccccccccc--
Confidence            3455566677999999887777777643       23  34532222          23334456654 557787774  


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCC-----------------
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAP-----------------  172 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~P-----------------  172 (421)
                        +..+.||.|+.++  +-.. .+|           ...+|+.+..+|+|+|.+.++..+...                 
T Consensus        87 --~~~~~fD~I~~~~--~l~h-~~d-----------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  150 (208)
T d1vlma_          87 --LKDESFDFALMVT--TICF-VDD-----------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYK  150 (208)
T ss_dssp             --SCTTCEEEEEEES--CGGG-SSC-----------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCST
T ss_pred             --ccccccccccccc--cccc-ccc-----------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccc
Confidence              3468899999885  2110 011           346899999999999999888754321                 


Q ss_pred             ----cCcccHHHHHHhCCcEEEEEe
Q 014642          173 ----FCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       173 ----Y~sWnI~~LAa~aGL~L~~~~  193 (421)
                          ++...+..+.+++||..++..
T Consensus       151 ~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         151 NARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             TCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEE
Confidence                234568889999999877544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.66  E-value=0.013  Score=55.44  Aligned_cols=133  Identities=14%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             cccccceee----eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHH--HhCCCEE
Q 014642           24 DEKEEEKWI----MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTL--KKLGASI   97 (421)
Q Consensus        24 ~~~~~~K~i----~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~L--r~~Gv~V   97 (421)
                      |+..+.+|+    ..++.+.+||=+.=|.=.||+++|..   +..||  +.|.-....+   .++.|++.-  ....+++
T Consensus       115 dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~--~VD~s~~al~---~a~~N~~ln~~~~~~~~~  186 (309)
T d2igta1         115 EQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVT--HVDASKKAIG---WAKENQVLAGLEQAPIRW  186 (309)
T ss_dssp             GGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEE--EECSCHHHHH---HHHHHHHHHTCTTSCEEE
T ss_pred             chhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEE--EEeChHHHHH---HHHHhhhhhcccCCcEEE
Confidence            345566764    34677889988877777778877764   23544  5675444443   477776542  2223444


Q ss_pred             EeecccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCe-EEEEecC
Q 014642           98 IHGVDATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGE-VHVSHKT  169 (421)
Q Consensus        98 lhgVDATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~Ge-IHVTLk~  169 (421)
                      +. -||.+.-......+.+||.||.|=|-.|. ++......++.+.   ......|..+|+++|. +.+|.+.
T Consensus       187 i~-~D~~~~l~~~~~~~~~fD~IilDPP~f~~-~~~~~~~~~~~~~---~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         187 IC-EDAMKFIQREERRGSTYDIILTDPPKFGR-GTHGEVWQLFDHL---PLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             EC-SCHHHHHHHHHHHTCCBSEEEECCCSEEE-CTTCCEEEHHHHH---HHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             Ee-CCHHHhHHHHhhcCCCCCEEEECCCcccc-cccchhHHHHHHH---HHHHHHHHHhcCCCCCEEEEecCC
Confidence            44 37766533333356899999999997763 3322222344443   3455668999999987 4444443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.66  E-value=0.066  Score=48.79  Aligned_cols=101  Identities=17%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCC---EEEeecccCCcCcccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGA---SIIHGVDATEMKEHSE  111 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv---~VlhgVDATkL~~~~~  111 (421)
                      -.++++||=||=|.=+++.-+++.+|  .+||+..+.. +.+.    .+++.   .++.|.   ......|...+     
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~-~q~~----~a~~~---~~~~~l~~~~~~~~~d~~~~-----  114 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSK-NQHA----RCEQV---LASIDTNRSRQVLLQGWEDF-----  114 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHH---HHTSCCSSCEEEEESCGGGC-----
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchH-HHHH----HHHHH---HHhhccccchhhhhhhhhhh-----
Confidence            45789999999998899999999885  4677777653 3322    23333   344442   22233344332     


Q ss_pred             cccCcccEEEE--cCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 LSKRKFDRIIF--NFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 Lk~~~FDrIIF--NFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                        ..+||+|+.  -|-|+|.           .|   +..||+.+..+|+|+|.+.|.
T Consensus       115 --~~~fD~i~si~~~eh~~~-----------~~---~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         115 --AEPVDRIVSIEAFEHFGH-----------EN---YDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             --CCCCSEEEEESCGGGTCG-----------GG---HHHHHHHHHHHSCTTCEEEEE
T ss_pred             --ccchhhhhHhhHHHHhhh-----------hh---HHHHHHHHHhccCCCceEEEE
Confidence              367999984  5778873           12   568999999999999998774

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.039  Score=46.60  Aligned_cols=102  Identities=14%  Similarity=0.246  Sum_probs=68.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      ..++.+||=||=|.=.++..|++.   +..|+++-+.  +.+          |+..++.+....+.-|+.+|.    +..
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s--~~~----------l~~a~~~~~~~~~~~~~~~l~----~~~  100 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPS--KEM----------LEVAREKGVKNVVEAKAEDLP----FPS  100 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESC--HHH----------HHHHHHHTCSCEEECCTTSCC----SCT
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeecc--ccc----------ccccccccccccccccccccc----ccc
Confidence            345679999999999999999875   3467777544  222          222333444445556888874    346


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEec
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHK  168 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk  168 (421)
                      +.||.||..+.-...  .+|           ...+|+.+.++|+|||.+.++.-
T Consensus       101 ~~fD~ii~~~~~~~~--~~d-----------~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         101 GAFEAVLALGDVLSY--VEN-----------KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             TCEEEEEECSSHHHH--CSC-----------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccceeeecchhhh--hhh-----------HHHHHHHHHhhcCcCcEEEEEEC
Confidence            889999976541111  011           23578899999999999998863

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.067  Score=49.02  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC---CCEEEeecccCCcCccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL---GASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~---Gv~VlhgVDATkL~~~~~L  112 (421)
                      +++++||=+|=|.=|.|++||+..+..-.|++  +|-.++..+   .|++|++.+...   .+.+. .-|+...    .+
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~--~d~~~~~~~---~Ar~n~~~~~~~~~~nv~~~-~~d~~~~----~~  164 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVIS--YEQRADHAE---HARRNVSGCYGQPPDNWRLV-VSDLADS----EL  164 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE--ECSCHHHHH---HHHHHHHHHHTSCCTTEEEE-CSCGGGC----CC
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEE--ecCCHHHHH---HHHHhhhhhccCCCceEEEE-ecccccc----cc
Confidence            56889999999999999999999876555554  454444443   588898887432   23333 3365543    23


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH-HHHhCCcEEEE
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE-LARKHSLLRLD  191 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~-LAa~aGL~L~~  191 (421)
                      ....||+|+.+-|..-                   .++..+..+|+|+|.+.+...+-+  ..+.+.+ |..+.++..++
T Consensus       165 ~~~~fDaV~ldlp~P~-------------------~~l~~~~~~LkpGG~lv~~~P~i~--Qv~~~~~~l~~~~~f~~i~  223 (264)
T d1i9ga_         165 PDGSVDRAVLDMLAPW-------------------EVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWTEPR  223 (264)
T ss_dssp             CTTCEEEEEEESSCGG-------------------GGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBCCCE
T ss_pred             cCCCcceEEEecCCHH-------------------HHHHHHHhccCCCCEEEEEeCccC--hHHHHHHHHHHcCCeecce
Confidence            4688999999876542                   457788999999999987764432  2344444 43456666555


Q ss_pred             Ee
Q 014642          192 CV  193 (421)
Q Consensus       192 ~~  193 (421)
                      ..
T Consensus       224 ~~  225 (264)
T d1i9ga_         224 AW  225 (264)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.46  E-value=0.08  Score=45.63  Aligned_cols=104  Identities=18%  Similarity=0.247  Sum_probs=67.2

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCcc
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRKF  117 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~F  117 (421)
                      ..+||=||=|.=.+|..|++..   .+|+  ..|--+++++.   |++++.. ....++++. -|++.+..     .++|
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g---~~v~--GvD~S~~ml~~---A~~~~~~-~~~~v~~~~-~d~~~~~~-----~~~f  102 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF---KNTW--AVDLSQEMLSE---AENKFRS-QGLKPRLAC-QDISNLNI-----NRKF  102 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS---SEEE--EECSCHHHHHH---HHHHHHH-TTCCCEEEC-CCGGGCCC-----SCCE
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC---CccE--eeccchhhhhh---ccccccc-cCccceeec-cchhhhcc-----cccc
Confidence            4689999999999999999863   3565  56744444332   4333322 112355543 37777642     3579


Q ss_pred             cEEEEcC---CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          118 DRIIFNF---PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       118 DrIIFNF---PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      |.|+..|   -|+-             +.+=+..+|+++.++|+|||.+.+.+.+
T Consensus       103 D~i~~~~~~~~~~~-------------~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         103 DLITCCLDSTNYII-------------DSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             EEEEECTTGGGGCC-------------SHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccceeeeeeeccC-------------CHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            9998643   2332             2233567999999999999999887643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.083  Score=46.60  Aligned_cols=105  Identities=14%  Similarity=0.190  Sum_probs=68.8

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHH-----HHhCCCEEEeecccCCcCcc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDT-----LKKLGASIIHGVDATEMKEH  109 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~-----Lr~~Gv~VlhgVDATkL~~~  109 (421)
                      .+++++||-||=|.=-.|..||+..+....|++.  |..+++.+   .|.+|++.     +.-..+.+.+ -|+..... 
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~i--e~~~~l~~---~a~~~l~~~~~~~~~~~~~~~~~-gD~~~~~~-  146 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGI--DHIKELVD---DSVNNVRKDDPTLLSSGRVQLVV-GDGRMGYA-  146 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHH---HHHHHHHHHCTHHHHTSSEEEEE-SCGGGCCG-
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEE--cCCHHHHH---HHHHhccccCcccccccceEEEE-eecccccc-
Confidence            4678999999999999999999987755566654  65566655   35666654     3333455544 36655432 


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                         ....||+|+.+.-..-.            ...        ..+.|+|||.+.+.+..
T Consensus       147 ---~~~~fD~I~~~~~~~~i------------p~~--------l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         147 ---EEAPYDAIHVGAAAPVV------------PQA--------LIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             ---GGCCEEEEEECSBBSSC------------CHH--------HHHTEEEEEEEEEEESC
T ss_pred             ---hhhhhhhhhhhcchhhc------------CHH--------HHhhcCCCcEEEEEEcc
Confidence               35689999987522110            111        23579999999987653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=94.33  E-value=0.074  Score=45.63  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=70.8

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEecccc-CHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLD-SYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlD-S~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~L  112 (421)
                      ..++++|||=||=|.=.++..|++..   .+++  ..| |.+.+.    .|+.++....-.++.+ ..-|+.++.    +
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~---~~v~--gvD~S~~~l~----~A~~~~~~~~~~~~~~-~~~d~~~~~----~   78 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYV---QECI--GVDATKEMVE----VASSFAQEKGVENVRF-QQGTAESLP----F   78 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGS---SEEE--EEESCHHHHH----HHHHHHHHHTCCSEEE-EECBTTBCC----S
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhC---CeEE--EEeCChhhhh----hhhhhhcccccccccc-ccccccccc----c
Confidence            46789999999999999999999864   3665  566 444432    2545554432223333 334777653    4


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ..+.||.|+.++--.=.   .|           ...+|+.+..+|+|+|.+.++-
T Consensus        79 ~~~~fD~v~~~~~l~~~---~d-----------~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHF---SD-----------VRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CTTCEEEEEEESCGGGC---SC-----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccceeeeeceeecc---cC-----------HHHHHHHHHHeeCCCcEEEEEE
Confidence            56889999987532111   11           3478999999999999988864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=94.31  E-value=0.095  Score=46.96  Aligned_cols=107  Identities=21%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEe-ecccCCcCccccc
Q 014642           34 HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIH-GVDATEMKEHSEL  112 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~Vlh-gVDATkL~~~~~L  112 (421)
                      ..++..+||=||=|.=.++..|++..+.+.+++++  |--+.+.+   .|+.+   ++..+..|-| .-|++++..    
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi--D~s~~~l~---~a~~~---~~~~~~~~~f~~~d~~~~~~----   91 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLA---EAREL---FRLLPYDSEFLEGDATEIEL----   91 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEE--ECCHHHHH---HHHHH---HHSSSSEEEEEESCTTTCCC----
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEE--ecchhHhh---hhhcc---cccccccccccccccccccc----
Confidence            35567899999999999999999887655677765  53333333   24444   3445666544 347777642    


Q ss_pred             ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          113 SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       113 k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                       ...||.|+.++=.--.   ++           ...+++.+.++|+|||.|.|.-
T Consensus        92 -~~~fD~v~~~~~l~~~---~d-----------~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          92 -NDKYDIAICHAFLLHM---TT-----------PETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             -SSCEEEEEEESCGGGC---SS-----------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cCCceEEEEehhhhcC---CC-----------HHHHHHHHHHHcCcCcEEEEEE
Confidence             2469999998632111   11           2357888999999999987754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.012  Score=54.14  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+.++||++|=|+.+-++.++++.+ ..+|++--.|.. -++.++|-..  |-..++.-.++|+.+ ||..--..   ..
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~--~~~~~~d~r~~i~~~-D~~~~l~~---~~  146 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPS--IAGKLDDPRVDVQVD-DGFMHIAK---SE  146 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHH--HHTTTTSTTEEEEES-CSHHHHHT---CC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChh--hcccccCCCeEEEec-hHHHHHhh---cC
Confidence            3457999999999999999998753 457888888842 3444555322  223455556776665 87663222   24


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      ++||.||-+.|.......          .-.-..||+.+++.|+++|-+.+-.
T Consensus       147 ~~yDvIi~D~~~p~~~~~----------~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAV----------NLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             SCEEEEEESCSSCCSCCC----------CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcch----------hhccHHHHHHHHhhcCCCceEEEec
Confidence            789999999987542111          0113589999999999999776553

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=93.47  E-value=0.18  Score=44.49  Aligned_cols=106  Identities=17%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             eccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCcccc
Q 014642           33 MHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        33 ~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~  111 (421)
                      .+.+++.+||=||=|.=.++..|+++++  .+|++..+. ...+ +   .+..+.....- ..++ +..-|+.+|.    
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s-~~~i-~---~a~~~~~~~gl~~~v~-~~~~d~~~l~----  130 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIA-PVQN-K---RNEEYNNQAGLADNIT-VKYGSFLEIP----  130 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESC-HHHH-H---HHHHHHHHHTCTTTEE-EEECCTTSCS----
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEecc-chhh-h---hhhccccccccccccc-cccccccccc----
Confidence            3567889999999999999999998874  467654443 3322 2   13333332211 1233 4456887763    


Q ss_pred             cccCcccEEEEcCC--CCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 LSKRKFDRIIFNFP--HAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 Lk~~~FDrIIFNFP--H~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      +..+.||.|+.+.-  |+..                ...+|+.+..+|+|||.+.|+
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d----------------~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPD----------------KLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhhccchhhhccC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence            34588999998743  3321                236889999999999998886

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.31  E-value=0.19  Score=42.70  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~~  115 (421)
                      +..+||=||=|.=.++..|+++   +.++++.  |--+.+.+   .|+.++.   +.|..| ++.=|+++|.    +. +
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~---~~~v~gv--D~s~~mi~---~a~~~~~---~~~~~i~~~~~d~~~l~----~~-~  104 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER---GYEVVGL--DLHEEMLR---VARRKAK---ERNLKIEFLQGDVLEIA----FK-N  104 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT---TCEEEEE--ESCHHHHH---HHHHHHH---HTTCCCEEEESCGGGCC----CC-S
T ss_pred             CCCEEEEeCCCCCccchhhccc---ceEEEEE--eecccccc---ccccccc---cccccchheehhhhhcc----cc-c
Confidence            3568999988887888889885   2466655  53233333   2444433   334332 3555788774    22 5


Q ss_pred             cccEEEEcC---CCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNF---PHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNF---PH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+..+   -|.-              ..=+..+++++..+|+|||.+.|.+.+
T Consensus       105 ~fD~I~~~~~~~~~~~--------------~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         105 EFDAVTMFFSTIMYFD--------------EEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             CEEEEEECSSGGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccchHhhhhhhhhcCC--------------hHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            799999753   2221              112357899999999999999987643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.29  E-value=0.14  Score=42.95  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=67.4

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCcccccccC
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~~  115 (421)
                      ..+||=||=|+=..+..|++.   +..++|.-..  +++++.   ++.+.+   +.|+.  -..-.|++++..     ..
T Consensus        31 ~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s--~~~l~~---a~~~~~---~~~~~~~~~~~~d~~~~~~-----~~   94 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKN--PASMAN---LERIKA---AEGLDNLQTDLVDLNTLTF-----DG   94 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT---TCEEEEEESC--HHHHHH---HHHHHH---HTTCTTEEEEECCTTTCCC-----CC
T ss_pred             CCcEEEECCCCCHHHHHHHHH---hhhhccccCc--HHHHHH---HHHHhh---hccccchhhhheecccccc-----cc
Confidence            358999999999999999986   3467765433  333322   222322   33442  234456665542     36


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      .||.|+.++..--.            +...+..+++.+..+|+|+|.+.+....
T Consensus        95 ~fD~I~~~~~~~~~------------~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          95 EYDFILSTVVMMFL------------EAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CEEEEEEESCGGGS------------CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccEEEEeeeeecC------------CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            79999998754321            1233567899999999999998886543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.045  Score=47.65  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=71.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEE-EeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASI-IHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~V-lhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=||=|.=.++..|+++.  +.++++.-.+  .++.+.   +..+   .+..+..| ....||..+..  .+..
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s--~~~~~~---a~~~---~~~~~~~~~~~~~~~~~~~~--~~~~  119 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECN--DGVFQR---LRDW---APRQTHKVIPLKGLWEDVAP--TLPD  119 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECC--HHHHHH---HHHH---GGGCSSEEEEEESCHHHHGG--GSCT
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCC--HHHHHH---HHHH---hhhccccccccccccccccc--cccc
Confidence            346799999999999999999864  3467665444  223321   3222   23344333 23345555433  2446


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ..||.|+|+..+...         .-.|..-...||+.+..+|+|||.+.+
T Consensus       120 ~~fD~i~fD~~~~~~---------~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         120 GHFDGILYDTYPLSE---------ETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             TCEEEEEECCCCCBG---------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ccccceeeccccccc---------ccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            789999999877663         112444466899999999999998765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.089  Score=46.33  Aligned_cols=119  Identities=13%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhh---CCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEE-EeecccCCcCc--
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKF---GSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASI-IHGVDATEMKE--  108 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~---gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~V-lhgVDATkL~~--  108 (421)
                      .+.-+||=||=|.=.|+..|++++   ..+..+..|..|.-+.+.+.   +..++....... +.+ .+..++..+..  
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK---YKELVAKISNLENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHH---HHHHHTTCCSCTTEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHH---HHHHHhhccccccccccchhhhhhhhcchh
Confidence            334489999999999988887654   23456667888865655554   333443333332 222 23333332211  


Q ss_pred             ccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          109 HSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       109 ~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                      .......+||.|+..+=.-..   +|           +..+++.+..+|+|+|.+.|+..++.
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~---~d-----------~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYV---KD-----------IPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGC---SC-----------HHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             cccCCCCceeEEEEccceecC---CC-----------HHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            112346889999997652221   11           23688889999999999999987754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.03  E-value=0.094  Score=47.87  Aligned_cols=105  Identities=19%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++++||=||-|.=-.|+.+|++ | +..|+|.-......      .+..+++.-.-.+...+..-|+.++.    +...+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~~~------~a~~~~~~n~~~~~v~~~~~~~~~~~----~~~~~  100 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSISD------YAVKIVKANKLDHVVTIIKGKVEEVE----LPVEK  100 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTTHH------HHHHHHHHTTCTTTEEEEESCTTTCC----CSSSC
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHHHh------hhhhHHHHhCCccccceEeccHHHcc----cccce
Confidence            4678999999987777777775 3 45687776543211      12333333222232334445777764    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ||.|+.+....+..           +..++..++..+..+|+|+|.|.
T Consensus       101 ~D~ivs~~~~~~l~-----------~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         101 VDIIISEWMGYCLF-----------YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEEEEECCCBBTBT-----------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEeeeeeeeeec-----------cHHHHHHHHHHHHhcCCCCeEEE
Confidence            99999987765532           23346677888888999998763

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.89  E-value=0.12  Score=43.33  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=77.5

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHh-CCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKK-LGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~-~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++++||=+|=|-=++|.+||+..   ..|+|.  |-.++..+   .+++|++.+.- ..+++++ -||.++..    ..
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~---~~V~av--D~~~~~l~---~a~~n~~~~gl~~~v~~~~-gda~~~~~----~~   98 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRV---RRVYAI--DRNPEAIS---TTEMNLQRHGLGDNVTLME-GDAPEALC----KI   98 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS---SEEEEE--ESCHHHHH---HHHHHHHHTTCCTTEEEEE-SCHHHHHT----TS
T ss_pred             CCCCEEEEEECCeEcccccccccc---eEEEEe--cCCHHHHH---HHHHHHHHcCCCcceEEEE-Cchhhccc----cc
Confidence            468899999999989999998753   367764  53333333   47778665432 2455655 47766532    24


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCc
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSL  187 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL  187 (421)
                      ..||.|+.+-+...                 +..+++.+..+|+|+|.+.+....-  -+...+.+.....|+
T Consensus        99 ~~~D~v~~~~~~~~-----------------~~~~~~~~~~~LkpgG~lvi~~~~~--e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_          99 PDIDIAVVGGSGGE-----------------LQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDLGF  152 (186)
T ss_dssp             CCEEEEEESCCTTC-----------------HHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHTTC
T ss_pred             CCcCEEEEeCcccc-----------------chHHHHHHHHHhCcCCEEEEEeecc--ccHHHHHHHHHHcCC
Confidence            68999999854311                 2467888999999999988765432  133344445555554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=92.81  E-value=0.22  Score=44.93  Aligned_cols=124  Identities=15%  Similarity=0.151  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .++++||=||=|.=.+|.++++. |  ..++|.-.|. +.+.    .|++|++. ....++++. .|+..     .+...
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~-~av~----~A~~na~~-n~~~~~~~~-~d~~~-----~~~~~  183 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDP-MVLP----QAEANAKR-NGVRPRFLE-GSLEA-----ALPFG  183 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCG-GGHH----HHHHHHHH-TTCCCEEEE-SCHHH-----HGGGC
T ss_pred             CccCEEEEcccchhHHHHHHHhc-C--CEEEEEECCh-HHHH----HHHHHHHH-cCCceeEEe-ccccc-----ccccc
Confidence            35789999999998888888763 3  4677765543 2222    35566542 222344433 23322     23457


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      +||.|+-|..                 ...+..++..+..+|+|||.+.++=.-.  .+.=.|.+..+++||.+.+..
T Consensus       184 ~fD~V~ani~-----------------~~~l~~l~~~~~~~LkpGG~lilSgil~--~~~~~v~~~~~~~Gf~~~~~~  242 (254)
T d2nxca1         184 PFDLLVANLY-----------------AELHAALAPRYREALVPGGRALLTGILK--DRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             CEEEEEEECC-----------------HHHHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHHHHHHHHHTTCEEEEEE
T ss_pred             ccchhhhccc-----------------cccHHHHHHHHHHhcCCCcEEEEEecch--hhHHHHHHHHHHCCCEEEEEE
Confidence            8999999831                 1124566777888999999999861100  011146667788999987764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.036  Score=51.32  Aligned_cols=114  Identities=17%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccC-HHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDS-YETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS-~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .-++||++|=|+.+-+..+.++.+ ..+|++--+|. --++.++|-.  .|-..++.-.++|+++ ||.+.-..   ..+
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~--~~~~~~~d~rv~i~~~-Da~~~l~~---~~~  150 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLP--GMAIGYSSSKLTLHVG-DGFEFMKQ---NQD  150 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEES-CHHHHHHT---CSS
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhch--hhccccCCCCceEEEc-cHHHHHhc---CCC
Confidence            346899999999999999987653 56888888883 3345555542  2333455556776654 65543222   246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      +||.||-+.++...  .        .....-..||+.++..|+++|-+.+-.
T Consensus       151 ~yDvIi~D~~~p~~--~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         151 AFDVIITDSSDPMG--P--------AESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             CEEEEEEECC---------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCC--c--------ccccccHHHHHHHHHhcCCCCeEEEec
Confidence            89999999887432  1        112234689999999999999876654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.73  E-value=0.057  Score=48.24  Aligned_cols=115  Identities=20%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC---CEEEeecccCCcCcccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG---ASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G---v~VlhgVDATkL~~~~~Lk  113 (421)
                      ...+||=||=|.=.+|..||+.   +.+|||  .|--+++++.   |+++....+...   ..++..+|...+..... .
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~---g~~v~g--vD~S~~ml~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  126 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE---GFSVTS--VDASDKMLKY---ALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-A  126 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT---TCEEEE--EESCHHHHHH---HHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-C
T ss_pred             CCCEEEEecCCCcHHHHHHHHc---CCeeee--ccCchHHHHH---HHHHHHhcccccccceeeeeeccccccccccC-C
Confidence            4579999999999999999986   346654  6633333332   434433322111   12344555555443222 2


Q ss_pred             cCcccEEEEc---CCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          114 KRKFDRIIFN---FPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       114 ~~~FDrIIFN---FPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ...||.|+.-   |.|+.... .        ..+-+..+|+++..+|+|||.+.+++.+
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~-~--------~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSK-G--------DQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTT-S--------SSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCceEEEEecCchhhcCCcc-c--------ChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            4679999863   56775311 0        1122567999999999999999997754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.68  E-value=0.041  Score=50.94  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=78.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccC-HHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDS-YETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS-~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +-++||++|=|+-+-+..++++.+ ...|++--+|. --++.++|-..  +-..+..-.++|+.+ ||-+.-..  ...+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~--~~~~~~~~r~~i~~~-Da~~~l~~--~~~~  153 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPD--VAIGYEDPRVNLVIG-DGVAFLKN--AAEG  153 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHH--HHGGGGSTTEEEEES-CHHHHHHT--SCTT
T ss_pred             CCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchh--hhccccCCCcEEEEc-cHHHHHhh--cccc
Confidence            346999999999999999988653 44688888873 22455566422  223455666777777 55443221  1236


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      +||.||-+.+....  .        ..+-.-..||+.+++.|+++|-+.+-+
T Consensus       154 ~yDvIi~D~~dp~~--~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         154 SYDAVIVDSSDPIG--P--------AKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             CEEEEEECCCCTTS--G--------GGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccEEEEcCCCCCC--c--------chhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            89999999887432  1        112234689999999999999887765

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.19  Score=45.32  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhC-CCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKL-GASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~-Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++++||=||-|.=.+|+.+|++ | +..|+|.-...  .+.    .+..++...... .++++ .-|+.++..    .
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~-G-a~~V~aid~s~--~~~----~a~~~~~~~~~~~~i~~~-~~~~~~l~~----~   99 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE--ILY----QAMDIIRLNKLEDTITLI-KGKIEEVHL----P   99 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST--HHH----HHHHHHHHTTCTTTEEEE-ESCTTTSCC----S
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHc-C-CCEEEEEeCHH--HHH----HHHHHHHHhCCCccceEE-EeeHHHhcC----c
Confidence            345789999999987788888886 3 45788775432  121    122232222222 24444 457777643    3


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ..+||.||.+....+..+           ..++..++.....+|+|+|.|.
T Consensus       100 ~~~~D~Ivse~~~~~~~~-----------e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         100 VEKVDVIISEWMGYFLLF-----------ESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCEEEEEECCCBTTBTT-----------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceEEEEeeeeeeccc-----------ccccHHHHHHHHhcCCCCcEEe
Confidence            578999999865544322           2234455555667899998865

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=91.69  E-value=0.54  Score=39.95  Aligned_cols=130  Identities=16%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             eeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc
Q 014642           32 IMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        32 i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +..|.+..+||=||=|+=.|+..|++..   ..++|.-.. .+.+ +.   ++.+    ...++.++. .|+.++.    
T Consensus        15 ~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s-~~~i-~~---a~~~----~~~~~~~~~-~~~~~~~----   77 (225)
T d2p7ia1          15 FTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEAS-EEAI-SH---AQGR----LKDGITYIH-SRFEDAQ----   77 (225)
T ss_dssp             HGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESC-HHHH-HH---HHHH----SCSCEEEEE-SCGGGCC----
T ss_pred             hhhhCCCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCc-HHHh-hh---hhcc----ccccccccc-ccccccc----
Confidence            4556678899999999999999998752   467776554 2222 11   1111    123566554 3665543    


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhH-hccCCCCeEEEEecCCCC------------------
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNAS-GMLRPRGEVHVSHKTTAP------------------  172 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~-~lL~~~GeIHVTLk~g~P------------------  172 (421)
                      + .++||.|+...  +-. -.+|           ...+++... .+|+|+|.+.|+.-+..-                  
T Consensus        78 ~-~~~fD~I~~~~--vle-h~~d-----------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~  142 (225)
T d2p7ia1          78 L-PRRYDNIVLTH--VLE-HIDD-----------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV  142 (225)
T ss_dssp             C-SSCEEEEEEES--CGG-GCSS-----------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCC
T ss_pred             c-ccccccccccc--eeE-ecCC-----------HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhc
Confidence            2 36899999752  211 0111           135677776 689999999999743210                  


Q ss_pred             ------------cCcccHHHHHHhCCcEEEEEe
Q 014642          173 ------------FCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       173 ------------Y~sWnI~~LAa~aGL~L~~~~  193 (421)
                                  |+.=.++.+..++||.++...
T Consensus       143 ~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~  175 (225)
T d2p7ia1         143 TEAEFAHGHRCTYALDTLERDASRAGLQVTYRS  175 (225)
T ss_dssp             CHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             CccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence                        111147788889998877654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=90.83  E-value=0.29  Score=41.06  Aligned_cols=115  Identities=15%  Similarity=0.242  Sum_probs=69.8

Q ss_pred             eee-ccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc
Q 014642           31 WIM-HYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH  109 (421)
Q Consensus        31 ~i~-~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~  109 (421)
                      ||. .+..+.+||=+|=|.-++++..+.. |  ..+|+  .|.-.+..+   -++.|++.+. .+.+|. -.|+......
T Consensus        34 ~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv~--vD~~~~a~~---~~~~N~~~~~-~~~~v~-~~~~d~~~~~  103 (171)
T d1ws6a1          34 YLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVL--VEKDPEAVR---LLKENVRRTG-LGARVV-ALPVEVFLPE  103 (171)
T ss_dssp             HHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEE--ECCCHHHHH---HHHHHHHHHT-CCCEEE-CSCHHHHHHH
T ss_pred             HhhccccCCCeEEEeccccchhhhhhhhc-c--chhhh--cccCHHHHh---hhhHHHHhhc-ccccee-eeehhccccc
Confidence            565 3466889999999999988876654 3  36765  564444433   4677877653 344433 2344332222


Q ss_pred             cccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          110 SELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       110 ~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      ......+||.|+.|=|...  +          ..+++..++.  ..+|+++|.|.+.+..
T Consensus       104 ~~~~~~~fD~If~DPPY~~--~----------~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         104 AKAQGERFTVAFMAPPYAM--D----------LAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHTTCCEEEEEECCCTTS--C----------TTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             ccccCCccceeEEcccccc--C----------HHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            2234578999999977321  1          1123444443  4689999999887754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.46  Score=40.78  Aligned_cols=102  Identities=18%  Similarity=0.138  Sum_probs=66.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC----CEEEeecccCCcCccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG----ASIIHGVDATEMKEHS  110 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G----v~VlhgVDATkL~~~~  110 (421)
                      -.++++||=||=|.=.++..|++.++  ..+++.-. |.+.+ +.   +..+.+   ..|    +.+. .-|++.+.   
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~-s~~~~-~~---ar~~~~---~~gl~~~v~~~-~~d~~~~~---   96 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDM-SSLFT-AQ---AKRRAE---ELGVSERVHFI-HNDAAGYV---   96 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEES-CHHHH-HH---HHHHHH---HTTCTTTEEEE-ESCCTTCC---
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEec-ccchh-hH---HHHHHH---Hhhccccchhh-hhHHhhcc---
Confidence            45678999999999899999998874  35655433 33333 21   333332   333    3343 35887762   


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                        ..++||.|+...=..-.   .|           ...+|+.+..+|+|||.+.|+
T Consensus        97 --~~~~fD~v~~~~~~~~~---~d-----------~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          97 --ANEKCDVAACVGATWIA---GG-----------FAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             --CSSCEEEEEEESCGGGT---SS-----------SHHHHHHHTTSEEEEEEEEEE
T ss_pred             --ccCceeEEEEEehhhcc---CC-----------HHHHHHHHHHHcCcCcEEEEE
Confidence              35789999976432221   11           246889999999999998886

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.07  E-value=0.089  Score=48.97  Aligned_cols=114  Identities=18%  Similarity=0.248  Sum_probs=73.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      +-++||++|=|+-+-+..++++. +...|++--+|.. -++.++|-.  .+-..+..-.++|++ -||-+--+.   ..+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~--~~~~~~~d~rv~v~~-~Da~~~l~~---~~~  161 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLK--QTSCGFDDPRAEIVI-ANGAEYVRK---FKN  161 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEE-SCHHHHGGG---CSS
T ss_pred             CCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHH--hhcccccCCCcEEEh-hhHHHHHhc---CCC
Confidence            35799999999999998888765 3567888888842 344455542  222345666777776 466553222   246


Q ss_pred             cccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          116 KFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      +||.||-+.+..-. +.        ..+-.-..||+.|+..|+++|-+.+-
T Consensus       162 ~yDvIi~D~~dp~~-~~--------~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         162 EFDVIIIDSTDPTA-GQ--------GGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             CEEEEEEEC-------------------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEcCCCCCc-Cc--------hhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            89999999876421 10        01112468999999999999976554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.49  E-value=0.23  Score=40.69  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             eeeccCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           31 WIMHYSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        31 ~i~~Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      ||.++-++.+||=+|=|.=+|++..+.. | +.++++.-.|..  ..   .-++.|++.+.-.+-..++.-||.+.-+. 
T Consensus         8 ~l~~~~~g~~vlDl~~GtG~~~iea~~r-g-a~~v~~ve~~~~--a~---~~~~~n~~~~~~~~~~~ii~~D~~~~l~~-   79 (152)
T d2esra1           8 MIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRK--AQ---AIIQDNIIMTKAENRFTLLKMEAERAIDC-   79 (152)
T ss_dssp             HHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHH--HH---HHHHHHHHTTTCGGGEEEECSCHHHHHHH-
T ss_pred             HHHhhCCCCeEEEcCCccCHHHHHHHHh-C-cceeeeehhchh--hh---hhhhhhhhhcccccchhhhcccccccccc-
Confidence            5677778889998888888888755543 3 456777666532  22   23566777665444234444588875322 


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCC
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTA  171 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~  171 (421)
                        ...+||.|+.|=|-..           ......|....  ...+|+++|.|.+.+....
T Consensus        80 --~~~~fDiIf~DPPy~~-----------~~~~~~l~~i~--~~~~L~~~g~iiiE~~~~~  125 (152)
T d2esra1          80 --LTGRFDLVFLDPPYAK-----------ETIVATIEALA--AKNLLSEQVMVVCETDKTV  125 (152)
T ss_dssp             --BCSCEEEEEECCSSHH-----------HHHHHHHHHHH--HTTCEEEEEEEEEEEETTC
T ss_pred             --cccccceeEechhhcc-----------chHHHHHHHHH--HCCCcCCCeEEEEEeCCCC
Confidence              3478999999966321           12233333222  2358999999999876543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.35  E-value=0.44  Score=43.38  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=63.7

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      ++++||=||-|-=-.|+.+|++ | +..|+|.-...  .+ +   .++.++....-.....+..-|+.++.    +...+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s~--~~-~---~a~~~~~~~~~~~~i~~i~~~~~~l~----~~~~~  105 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMSS--II-E---MAKELVELNGFSDKITLLRGKLEDVH----LPFPK  105 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESST--HH-H---HHHHHHHHTTCTTTEEEEESCTTTSC----CSSSC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCCH--HH-H---HHHHHHHHhCccccceEEEeehhhcc----Ccccc
Confidence            5789999999987778777775 3 45677765542  11 1   13334443333333344445666663    34578


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEE
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVH  164 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIH  164 (421)
                      ||.|+-+--.....+           ..++..++.....+|+|+|.|.
T Consensus       106 ~D~i~se~~~~~~~~-----------e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         106 VDIIISEWMGYFLLY-----------ESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEEECCCBTTBST-----------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEEEecceeecc-----------chhHHHHHHHHHhccCCCeEEE
Confidence            999998755444322           1224455666677999998763

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.14  E-value=0.14  Score=46.67  Aligned_cols=114  Identities=20%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccC-HHHHHHhhhhHH-HHHHH---HHhCCCEEEeecccCCcCcccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDS-YETVVKKFKEAR-SNLDT---LKKLGASIIHGVDATEMKEHSE  111 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS-~eeL~~KY~~a~-~Nl~~---Lr~~Gv~VlhgVDATkL~~~~~  111 (421)
                      +.++||++|=|+.+-+..++++ + ...|++--.|. --++.++|-... ...+.   ...-.++|++ -||-+.-.   
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-~Da~~~l~---  145 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIK---  145 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHH---
T ss_pred             CCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-ChHHHHHh---
Confidence            4579999999999999988864 3 45788877763 223344454211 11222   2223455554 36544321   


Q ss_pred             cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEe
Q 014642          112 LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       112 Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTL  167 (421)
                       ..++||.||-+.+....  .        ..+..-..||+.+++.|+++|-+.+-.
T Consensus       146 -~~~~yDvIi~D~~~~~~--~--------~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         146 -NNRGFDVIIADSTDPVG--P--------AKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             -HCCCEEEEEEECCCCC---------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccCCCCEEEEeCCCCCC--C--------cccccCHHHHHhhHhhcCCCceEEEec
Confidence             24679999999987432  1        111123589999999999999765543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.60  E-value=0.087  Score=49.58  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .+-++||+||=||-+-+..++++. +..+|++--+|.. -++.++|-..  |-..++.-.++|+++ ||.+--.   -..
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~--~~~~~~dprv~i~i~-Da~~~l~---~~~  177 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPG--MSCGFSHPKLDLFCG-DGFEFLK---NHK  177 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTT--TSGGGGCTTEEEECS-CHHHHHH---HCT
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchh--hccccCCCCeEEEEc-hHHHHHH---hCC
Confidence            345789999999999999999764 3457888888732 3344555311  112344445665543 5544321   134


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ++||.||-+.+..-.  .        .....-..||+.++..|+++|-+.+-
T Consensus       178 ~~yDvII~D~~dp~~--~--------~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         178 NEFDVIITDSSDPVG--P--------AESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             TCEEEEEECCC-----------------------HHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCC--c--------chhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            789999999886432  1        12334679999999999998876655

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=88.52  E-value=0.14  Score=47.60  Aligned_cols=116  Identities=17%  Similarity=0.279  Sum_probs=71.6

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCH-HHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccC
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSY-ETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKR  115 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~-eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~  115 (421)
                      .-++||++|=|+-+-+..+++.. +..+|++--+|.. -++.++|= ...|-..++.-.++|+++ ||.+.-+.   ...
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f-~~~~~~~~~d~rv~i~~~-Da~~~l~~---~~~  150 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHM-PEWHQGAFDDPRAVLVID-DARAYLER---TEE  150 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHC-HHHHTTGGGCTTEEEEES-CHHHHHHH---CCC
T ss_pred             CcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcC-cccccCccCCCceEEEEc-hHHHHhhh---cCC
Confidence            35799999999999999998764 3567888877732 12233331 011112234445665543 66553221   246


Q ss_pred             cccEEEEcCCCC-CCCCCcccHHHHHHhHHH-HHHHHHhhHhccCCCCeEEEEe
Q 014642          116 KFDRIIFNFPHA-GFHGKEEDDEVIRMHMSL-VEGFFRNASGMLRPRGEVHVSH  167 (421)
Q Consensus       116 ~FDrIIFNFPH~-G~~GkEd~~~~I~~nr~L-L~~FF~SA~~lL~~~GeIHVTL  167 (421)
                      +||.||-+-++. |..+.         ...| -..||+.|++.|+++|-+.+-.
T Consensus       151 ~yDvIi~D~~dp~~~~~~---------~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         151 RYDVVIIDLTDPVGEDNP---------ARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CEEEEEEECCCCBSTTCG---------GGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccEEEEeCCCcccccch---------hhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            899999987653 31110         1112 3589999999999999765543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.11  E-value=0.27  Score=43.61  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=61.2

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||-||=|.=.+|..||+..   ..|+|.-  ..+++.++   |+.|+..  ..++.++++ |+..--    ...
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE--~~~~~~~~---A~~~~~~--~~nv~~~~~-d~~~g~----~~~  132 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVE--INEKMYNY---ASKLLSY--YNNIKLILG-DGTLGY----EEE  132 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEE--SCHHHHHH---HHHHHTT--CSSEEEEES-CGGGCC----GGG
T ss_pred             hcccceEEEecCCCCHHHHHHHHHh---ccccccc--ccHHHHHH---HHHHHhc--ccccccccC-chhhcc----hhh
Confidence            4678899999999988998888753   2566654  44444442   4455432  234555544 443321    124


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      .+||+||.+..-      +..      -..|+        +.|++||.+.+-+-++
T Consensus       133 ~pfD~Iiv~~a~------~~i------p~~l~--------~qLk~GGrLV~pvg~~  168 (224)
T d1vbfa_         133 KPYDRVVVWATA------PTL------LCKPY--------EQLKEGGIMILPIGVG  168 (224)
T ss_dssp             CCEEEEEESSBB------SSC------CHHHH--------HTEEEEEEEEEEECSS
T ss_pred             hhHHHHHhhcch------hhh------hHHHH--------HhcCCCCEEEEEEcCC
Confidence            679999986421      110      12222        4699999998877654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.85  E-value=2.1  Score=34.68  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=81.7

Q ss_pred             ccCCCCeEEEEecCChhHHHHH-HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccc-
Q 014642           34 HYSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSE-  111 (421)
Q Consensus        34 ~Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~-  111 (421)
                      ...++++||++|-|-.-...+. +++.| +.+|+++..+.            +.++..+++|+...+..+.....+... 
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~------------~rl~~a~~~Ga~~~~~~~~~~~~~~~~~   89 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSA------------TRLSKAKEIGADLVLQISKESPQEIARK   89 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH------------HHHHHHHHTTCSEEEECSSCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCH------------HHHHHHHHhCCccccccccccccccccc
Confidence            3467889999999988766655 56665 56899986552            236677888998877776655433211 


Q ss_pred             ---cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcE
Q 014642          112 ---LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLL  188 (421)
Q Consensus       112 ---Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~  188 (421)
                         ..+..+|.||=   .+|.                 ..-+..+.++++++|.|.+.=..+.| ...++..+-. .++.
T Consensus        90 ~~~~~g~g~Dvvid---~~G~-----------------~~~~~~a~~~~~~gG~iv~~G~~~~~-~~~~~~~~~~-k~l~  147 (171)
T d1pl8a2          90 VEGQLGCKPEVTIE---CTGA-----------------EASIQAGIYATRSGGTLVLVGLGSEM-TTVPLLHAAI-REVD  147 (171)
T ss_dssp             HHHHHTSCCSEEEE---CSCC-----------------HHHHHHHHHHSCTTCEEEECSCCCSC-CCCCHHHHHH-TTCE
T ss_pred             ccccCCCCceEEEe---ccCC-----------------chhHHHHHHHhcCCCEEEEEecCCCC-CccCHHHHHH-CCcE
Confidence               13467887653   2342                 13477888999999998776554443 3466665533 5788


Q ss_pred             EEEEe
Q 014642          189 RLDCV  193 (421)
Q Consensus       189 L~~~~  193 (421)
                      +..+.
T Consensus       148 i~Gs~  152 (171)
T d1pl8a2         148 IKGVF  152 (171)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            87763

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=2  Score=38.70  Aligned_cols=142  Identities=16%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--EEeecccCCcCccccccc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--IIHGVDATEMKEHSELSK  114 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--VlhgVDATkL~~~~~Lk~  114 (421)
                      .+++||=+-=|-=+=|..||... ....|+|.-.+..        ....-.+.|+++|+.  +....|+....   ....
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~--------R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~  169 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQ--------RLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGE  169 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTT--------THHHHHHHHHHTTCCCEEEECCTTCTHH---HHTT
T ss_pred             ccceeEeccCccccchhhhhhhh-hhhhhhhhhcchh--------hhhhHhhhhhcccccceeeeccccccch---hccc
Confidence            34567655555555556666543 3356888776642        122233446667764  33333433221   1124


Q ss_pred             CcccEEEEcCCCCCCC--CCcc------cHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH--HHHh
Q 014642          115 RKFDRIIFNFPHAGFH--GKEE------DDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE--LARK  184 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~--GkEd------~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~--LAa~  184 (421)
                      ..||+|+-+=|+.|.+  ++..      ....+.....|=...+.+|.++|++||.|.=+.|+-.|-...++++  |.+.
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~  249 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT  249 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence            6799999999999941  1211      1224455566667788899999999999999999988876655554  4444


Q ss_pred             CCcEEE
Q 014642          185 HSLLRL  190 (421)
Q Consensus       185 aGL~L~  190 (421)
                      .++.+.
T Consensus       250 ~~~~~~  255 (284)
T d1sqga2         250 ADAELC  255 (284)
T ss_dssp             TTCEEC
T ss_pred             CCcEEe
Confidence            567664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.70  E-value=0.31  Score=39.31  Aligned_cols=122  Identities=13%  Similarity=0.145  Sum_probs=73.1

Q ss_pred             cCCCCeEEEEecCChhHHHHH-HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      -.++++||+.|-|.--..... +++.|  ..+++|.-+.            +.++.++++|+....+-.-.+........
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~------------~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~   90 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGD------------EKLELAKELGADLVVNPLKEDAAKFMKEK   90 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH------------HHHHHHHHTTCSEEECTTTSCHHHHHHHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCH------------HHhhhhhhcCcceecccccchhhhhcccc
Confidence            446889999999998765544 45554  3677775432            12567888998776554333332221112


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEE
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDC  192 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~  192 (421)
                      ...+|.||++   +|. +                .-+..+..+|+++|.|.+.=..+.+ ..+++-.+- ..++.+..+
T Consensus        91 ~~~~~~~v~~---~~~-~----------------~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~-~~~~~i~gs  147 (168)
T d1rjwa2          91 VGGVHAAVVT---AVS-K----------------PAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTV-LNGIKIIGS  147 (168)
T ss_dssp             HSSEEEEEES---SCC-H----------------HHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHH-HTTCEEEEC
T ss_pred             cCCCceEEee---cCC-H----------------HHHHHHHHHhccCCceEecccccCC-CCCCHHHHH-HCCcEEEEE
Confidence            3456667765   232 0                2356677789999998876444443 346666553 445677665

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.55  Score=41.53  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=64.4

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      +..+||=||=|.=.|+..|++.+. ...+++  .|--+.+.+.   +..+     ..++.. .--|+++|.    +....
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~g--iD~s~~~~~~---a~~~-----~~~~~~-~~~d~~~l~----~~~~s  147 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALP-EITTFG--LDVSKVAIKA---AAKR-----YPQVTF-CVASSHRLP----FSDTS  147 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEE--EESCHHHHHH---HHHH-----CTTSEE-EECCTTSCS----BCTTC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCEEEE--ecchHhhhhh---hhcc-----cccccc-eeeehhhcc----CCCCC
Confidence            456999999999999999998863 445555  4532222221   2111     123433 345888774    45688


Q ss_pred             ccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHH
Q 014642          117 FDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIE  179 (421)
Q Consensus       117 FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~  179 (421)
                      ||.|+.+|-..-                     ++.+..+|+|+|.+.|+...  |...|++.
T Consensus       148 fD~v~~~~~~~~---------------------~~e~~rvLkpgG~l~~~~p~--~~~l~el~  187 (268)
T d1p91a_         148 MDAIIRIYAPCK---------------------AEELARVVKPGGWVITATPG--PRHLMELK  187 (268)
T ss_dssp             EEEEEEESCCCC---------------------HHHHHHHEEEEEEEEEEEEC--TTTTHHHH
T ss_pred             EEEEeecCCHHH---------------------HHHHHHHhCCCcEEEEEeeC--CcchHHHH
Confidence            999997752211                     12345689999999998754  33445443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.27  E-value=0.59  Score=41.05  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=68.3

Q ss_pred             cCCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      -.++++||-||=|.=-.|..||+..+  ..+++  .|..+++.+   .+.+|++.+.-.++.++++ |+....    ...
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g--~~V~~--ie~~~~l~~---~a~~~l~~~g~~nv~~~~g-d~~~g~----~~~  143 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK--TDVYT--IERIPELVE---FAKRNLERAGVKNVHVILG-DGSKGF----PPK  143 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEE--EESCHHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GGG
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC--ceeEE--EeccHHHHH---HHHHHHHHcCCceeEEEEC-ccccCC----ccc
Confidence            45688999999999999998888765  34544  454466654   4777887776666766665 665432    235


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCC
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTT  170 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g  170 (421)
                      ..||+||.+-----            ....|+        +.|++||.+.+-+.+.
T Consensus       144 ~pfD~Iiv~~a~~~------------ip~~l~--------~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         144 APYDVIIVTAGAPK------------IPEPLI--------EQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             CCEEEEEECSBBSS------------CCHHHH--------HTEEEEEEEEEEECSS
T ss_pred             CcceeEEeeccccc------------CCHHHH--------HhcCCCCEEEEEEccC
Confidence            88999998522111            012222        3589999988876543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.99  E-value=5.7  Score=34.86  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             CCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCC-CEEEeecccCCcCcc-cccccC
Q 014642           38 KHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLG-ASIIHGVDATEMKEH-SELSKR  115 (421)
Q Consensus        38 ~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~G-v~VlhgVDATkL~~~-~~Lk~~  115 (421)
                      .-+||=+|=|.=-=+++||+... ..+++|+-.+.+ .+    .-|+.|++...-.+ +.+++.-+...+... ......
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~-al----~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDM-CF----NYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHH-HH----HHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCC-CccccceecCHH-HH----HHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccC
Confidence            45899999999999999998874 568999988743 22    24777887765333 444444333443221 122346


Q ss_pred             cccEEEEcCCCCCCCCCccc--HHHHHHh-------------------HHHHHHHHHhhHhccCCCCeEEEEecCCCCcC
Q 014642          116 KFDRIIFNFPHAGFHGKEED--DEVIRMH-------------------MSLVEGFFRNASGMLRPRGEVHVSHKTTAPFC  174 (421)
Q Consensus       116 ~FDrIIFNFPH~G~~GkEd~--~~~I~~n-------------------r~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~  174 (421)
                      +||.||.|=|..........  .+..+.+                   -..+....+.+..+++..|-+..-+  |..-+
T Consensus       136 ~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i--g~~~~  213 (250)
T d2h00a1         136 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML--GKKCS  213 (250)
T ss_dssp             CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE--SSTTS
T ss_pred             ceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe--cchhh
Confidence            89999999999963211100  0001000                   0135556666777888777653322  22112


Q ss_pred             cccHHHHHHhCCcEEEEEeeC
Q 014642          175 KWHIEELARKHSLLRLDCVQF  195 (421)
Q Consensus       175 sWnI~~LAa~aGL~L~~~~~F  195 (421)
                      .=.|..+.++.|+.=++..+|
T Consensus       214 l~~i~~~L~~~g~~~i~~ie~  234 (250)
T d2h00a1         214 LAPLKEELRIQGVPKVTYTEF  234 (250)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEe
Confidence            224677778888866666665

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=84.74  E-value=1  Score=37.56  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             ccCCCCeEEEE--ecCCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccc
Q 014642           34 HYSSKHQILLV--GEGDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHS  110 (421)
Q Consensus        34 ~Yss~~rILLV--GEGDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~  110 (421)
                      ...+++++|++  |-|.. +++.-||+++|  .++|||+..+.        +.++-++.|+++|+.....-|.....+..
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~--------~~~~~~~~~~~lGad~vi~~~~~~~~~~~   94 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRP--------NLDEVVASLKELGATQVITEDQNNSREFG   94 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCT--------THHHHHHHHHHHTCSEEEEHHHHHCGGGH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEeccc--------ccchHHhhhhhccccEEEeccccchhHHH
Confidence            34567889998  67888 99999999986  47877764321        12234567888998776655433322210


Q ss_pred             ----cc---ccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE-ecCCCC
Q 014642          111 ----EL---SKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS-HKTTAP  172 (421)
Q Consensus       111 ----~L---k~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT-Lk~g~P  172 (421)
                          .+   .+..+|.| ||+  +|.                  ..+..+.++|+++|.+.+- .-.+.|
T Consensus        95 ~~v~~~~~~~g~~vdvv-~D~--vg~------------------~~~~~~~~~l~~~G~~v~~G~~~~~~  143 (189)
T d1gu7a2          95 PTIKEWIKQSGGEAKLA-LNC--VGG------------------KSSTGIARKLNNNGLMLTYGGMSFQP  143 (189)
T ss_dssp             HHHHHHHHHHTCCEEEE-EES--SCH------------------HHHHHHHHTSCTTCEEEECCCCSSCC
T ss_pred             HHHHHHHhhccCCceEE-EEC--CCc------------------chhhhhhhhhcCCcEEEEECCccCCC
Confidence                01   23456654 454  552                  2334456789999987543 234444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=84.46  E-value=1  Score=37.98  Aligned_cols=108  Identities=14%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhC-CCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCccccccc
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFG-SASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSK  114 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~g-s~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~  114 (421)
                      .++.+||=||=|.=..+..|++... .+.+|++  .|--+++.+   .|.+++.........-+...|+..+      ..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~g--iD~S~~ml~---~A~~~~~~~~~~~~~~~~~~d~~~~------~~  106 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIG--IDNSQPMVE---RCRQHIAAYHSEIPVEILCNDIRHV------EI  106 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEE--ECSCHHHHH---HHHHHHHTSCCSSCEEEECSCTTTC------CC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEE--eCCCHHHHH---HHHHHhHhhcccchhhhccchhhcc------cc
Confidence            4567999999988888888988753 2345555  774444444   2555554333322223333454433      23


Q ss_pred             CcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          115 RKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       115 ~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                      ..+|.|+.++=..-. ..++           ...+|+++..+|+|+|.+.+.
T Consensus       107 ~~~d~i~~~~~l~~~-~~~d-----------~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         107 KNASMVILNFTLQFL-PPED-----------RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             CSEEEEEEESCGGGS-CGGG-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceeeEEeeecccc-Chhh-----------HHHHHHHHHHhCCCCceeecc
Confidence            567888887421100 1111           237889999999999998876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.55  Score=38.52  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             cCCCCeEEEEe-cCCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc--c
Q 014642           35 YSSKHQILLVG-EGDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH--S  110 (421)
Q Consensus        35 Yss~~rILLVG-EGDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~--~  110 (421)
                      ..++++||+.| -|.. ..+..||++.|  .++++|+- +.+           .++.++++|+.-.++..-.++.+.  .
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~-~~~-----------~~~~~~~~Ga~~vi~~~~~~~~~~i~~   91 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAG-TEE-----------GQKIVLQNGAHEVFNHREVNYIDKIKK   91 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEES-SHH-----------HHHHHHHTTCSEEEETTSTTHHHHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccC--cccccccc-ccc-----------ccccccccCcccccccccccHHHHhhh
Confidence            45788999999 5777 45556788875  47888874 321           245678889865543322222221  1


Q ss_pred             ccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEE
Q 014642          111 ELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHV  165 (421)
Q Consensus       111 ~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHV  165 (421)
                      ...++.||.|+-.   +|.                  ..+..+.++|+++|.|.+
T Consensus        92 ~t~~~g~d~v~d~---~g~------------------~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2          92 YVGEKGIDIIIEM---LAN------------------VNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             HHCTTCEEEEEES---CHH------------------HHHHHHHHHEEEEEEEEE
T ss_pred             hhccCCceEEeec---ccH------------------HHHHHHHhccCCCCEEEE
Confidence            1235678876642   231                  235666778999998775

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.71  E-value=0.85  Score=36.84  Aligned_cols=123  Identities=17%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             cCCCCeEEEEecCChhHHHHH-HHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccc
Q 014642           35 YSSKHQILLVGEGDFSFSFAL-SQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELS  113 (421)
Q Consensus        35 Yss~~rILLVGEGDFSFSlSL-a~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk  113 (421)
                      ..++++||++|-|.--..... ++..|  .++++++...            +.++.++++|+....+.+..+..+.....
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~------------~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~   90 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDD------------AKLELARKLGASLTVNARQEDPVEAIQRD   90 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH------------HHHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC--Cccceecchh------------hHHHhhhccCccccccccchhHHHHHHHh
Confidence            356889999999988766554 56665  5899986542            23567788998765544433332211111


Q ss_pred             cCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHHHHHhCCcEEEEEe
Q 014642          114 KRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEELARKHSLLRLDCV  193 (421)
Q Consensus       114 ~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~LAa~aGL~L~~~~  193 (421)
                      ...+|.+|..   +|.                 ..-+..+.++|+++|.|.+-=..+.+ ...++..+- ..++.+..+.
T Consensus        91 ~~g~~~~i~~---~~~-----------------~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~-~k~~~i~Gs~  148 (166)
T d1llua2          91 IGGAHGVLVT---AVS-----------------NSAFGQAIGMARRGGTIALVGLPPGD-FPTPIFDVV-LKGLHIAGSI  148 (166)
T ss_dssp             HSSEEEEEEC---CSC-----------------HHHHHHHHTTEEEEEEEEECCCCSSE-EEEEHHHHH-HTTCEEEECC
T ss_pred             hcCCcccccc---ccc-----------------chHHHHHHHHhcCCcEEEEEEecCCC-ccCCHHHHH-hCCcEEEEEe
Confidence            2335555542   332                 12345578899999997663111111 223333332 3466666543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=82.99  E-value=4.1  Score=31.95  Aligned_cols=108  Identities=8%  Similarity=-0.032  Sum_probs=63.0

Q ss_pred             CCCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCE--------------EEeec
Q 014642           36 SSKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGAS--------------IIHGV  101 (421)
Q Consensus        36 ss~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~--------------VlhgV  101 (421)
                      .++.|||-||=|.=..+.-||++   +..|  |..|--++.+++   +++.   +++.+..              .++..
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~---G~~V--~gvD~S~~~i~~---a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ---GYHV--VGAELSEAAVER---YFTE---RGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH---CCEE--EEEEECHHHHHH---HHHH---HCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc---CCce--EeecccHHHHHH---HHHH---hccccchhhhhhhhhccccccceecc
Confidence            46789999999999999999986   3455  455633333332   2222   2222221              12222


Q ss_pred             ccCCcCcccccccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecC
Q 014642          102 DATEMKEHSELSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKT  169 (421)
Q Consensus       102 DATkL~~~~~Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~  169 (421)
                      |+..+..   .....||.|+-.+=....            +..-...+++.+..+|+|+|.+.+....
T Consensus        88 d~~~l~~---~~~~~~D~i~~~~~l~~l------------~~~~~~~~~~~i~~~LkpgG~l~l~~~~  140 (201)
T d1pjza_          88 DFFALTA---RDIGHCAAFYDRAAMIAL------------PADMRERYVQHLEALMPQACSGLLITLE  140 (201)
T ss_dssp             CCSSSTH---HHHHSEEEEEEESCGGGS------------CHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             ccccccc---ccccceeEEEEEeeeEec------------chhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence            3333321   124679999864433221            1122356888899999999998776543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=82.33  E-value=0.98  Score=37.56  Aligned_cols=100  Identities=18%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             ccCCCCeEEEEecCCh-hHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcc-cc
Q 014642           34 HYSSKHQILLVGEGDF-SFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEH-SE  111 (421)
Q Consensus        34 ~Yss~~rILLVGEGDF-SFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~-~~  111 (421)
                      ...++++||++|-|.- ..+.-+|+.+| +.+|++|..+..            -++..+++|+......+.....+. ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~------------r~~~a~~lGa~~~i~~~~~~~~~~v~~   90 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPI------------CVEAAKFYGATDILNYKNGHIEDQVMK   90 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHH------------HHHHHHHHTCSEEECGGGSCHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhh------------hHHHHHhhCccccccccchhHHHHHHH
Confidence            3467889999999975 44556677775 457888876531            244566788765544443333221 11


Q ss_pred             -cccCcccEEEEcCCCCCCCCCcccHHHHHHhHHHHHHHHHhhHhccCCCCeEEEE
Q 014642          112 -LSKRKFDRIIFNFPHAGFHGKEEDDEVIRMHMSLVEGFFRNASGMLRPRGEVHVS  166 (421)
Q Consensus       112 -Lk~~~FDrIIFNFPH~G~~GkEd~~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVT  166 (421)
                       ..+..+|.||=.   +|.  .               .-+..|..+++++|.|.+.
T Consensus        91 ~t~g~G~D~vid~---~g~--~---------------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          91 LTNGKGVDRVIMA---GGG--S---------------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             HTTTSCEEEEEEC---SSC--T---------------THHHHHHHHEEEEEEEEEC
T ss_pred             HhhccCcceEEEc---cCC--H---------------HHHHHHHHHHhcCCEEEEE
Confidence             134569977654   332  0               1245566788999988774

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.95  E-value=13  Score=33.20  Aligned_cols=135  Identities=9%  Similarity=-0.002  Sum_probs=77.3

Q ss_pred             CCCeEEEEecCChhHHHHHHHhhCCCCcEEeccccCHHHHHHhhhhHHHHHHHHHhCCCEEEeecccCCcCcccccccCc
Q 014642           37 SKHQILLVGEGDFSFSFALSQKFGSASNICASSLDSYETVVKKFKEARSNLDTLKKLGASIIHGVDATEMKEHSELSKRK  116 (421)
Q Consensus        37 s~~rILLVGEGDFSFSlSLa~~~gs~~nLvATSlDS~eeL~~KY~~a~~Nl~~Lr~~Gv~VlhgVDATkL~~~~~Lk~~~  116 (421)
                      .+++||=+.=|-=+=|..||...+....|+|.-.+ ..-+    ...++|++.+.-..+ .+..-|++.+.... ....+
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~-~~R~----~~l~~~l~r~g~~~~-~~~~~d~~~~~~~~-~~~~~  166 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLD-AKRL----ASMATLLARAGVSCC-ELAEEDFLAVSPSD-PRYHE  166 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESC-HHHH----HHHHHHHHHTTCCSE-EEEECCGGGSCTTC-GGGTT
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCC-HHHH----HHHHHHHHhcCccce-eeeehhhhhhcccc-cccce
Confidence            35566655555555566666666555567777654 2222    234455544432222 45556887776542 23467


Q ss_pred             ccEEEEcCCCCCCCCC-------------ccc--HHHHHHhHHHHHHHHHhhHhccCCCCeEEEEecCCCCcCcccHHH-
Q 014642          117 FDRIIFNFPHAGFHGK-------------EED--DEVIRMHMSLVEGFFRNASGMLRPRGEVHVSHKTTAPFCKWHIEE-  180 (421)
Q Consensus       117 FDrIIFNFPH~G~~Gk-------------Ed~--~~~I~~nr~LL~~FF~SA~~lL~~~GeIHVTLk~g~PY~sWnI~~-  180 (421)
                      ||+|+-+=|+.|. |.             ++.  .......+    ..+.+|.. |+++|.|.=+-|+-.|-...++++ 
T Consensus       167 fD~VL~DaPCSg~-G~~~r~p~~~~~~~~~~~~~~~l~~~Q~----~il~~a~~-l~~gG~lvYsTCSl~~~ENe~vV~~  240 (293)
T d2b9ea1         167 VHYILLDPSCSGS-GMPSRQLEEPGAGTPSPVRLHALAGFQQ----RALCHALT-FPSLQRLVYSTCSLCQEENEDVVRD  240 (293)
T ss_dssp             EEEEEECCCCCC-------------------CCHHHHHHHHH----HHHHHHTT-CTTCCEEEEEESCCCGGGTHHHHHH
T ss_pred             eeEEeecCcccch-hhhcccchhhccCCcchhhHHHHhhhhH----HhHHHhhh-cccccEEEEeeccCChhHhHHHHHH
Confidence            9999999999994 31             000  11122222    34455774 689999888888888876555554 


Q ss_pred             HHHh
Q 014642          181 LARK  184 (421)
Q Consensus       181 LAa~  184 (421)
                      +.++
T Consensus       241 ~L~~  244 (293)
T d2b9ea1         241 ALQQ  244 (293)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            4443