Citrus Sinensis ID: 014650

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MPPSSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHcHHHHHHHccccHHHHHHHccccccEEEEEEcccccccEEEEEcccccccccccccccccccccccEEEEEEccEEEEEcccccccccccccccccccEEEEEEcccccEEEcccccccccccEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEccccccccccccEEEEEEccEEEEEEccccccccccccccccccHHHHHHHHHccccccEEEEcccccEEEEcccccccccccccEEEEEEEEccccccEEcccccEEEEEEcccccEEEEEcccccccccccEEEEEEccEEEEEEccccccccccHHcccccccccEEEEEEccccccEEEEcccccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccEEEEEEEcccccccEEEEcccccccccccccccccccccccccEEEEEccEEEEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEccccEEEEEEccccccccccccccccEEEEEccccccEEEcccccccccccEEEEEEEccEEEEEEccccccccccccccccEEEEcccccccccccEEEEEccccccEEEcccccccccccccccEEEEEccccccccccccccccEEEEccccccEEEEcccccccccccccEEEEEccEEEEEEccccccccccccccccccccEEEEEEEcccccccEEEccccccccccccccEEEEEEEc
Coil and Loop (DISEMBL)
mppsslrqqqlvatdetvtlipglpndVASLILAFVpyshqsrlKQTCRSWFLffssrtlvfdrhkfnsqsdllcifpqdpsisspflfdaanracrplpplpcnpstyslcnftsislgpyiyllggshfdarsfpldrplpsdsafrfnfltfsweriapmisprgsFACAAVRSLNQIIVAgggsrhslfgaagsrissverydvaknewvsmdemprfragcVGFVAEESGEFWVmggygdsrtisgvlpvdeyYRDAVVMQLKKkkktddhddgdrgtwrevGDMWDEWERSRIGKIVvmedenrgrpevfmldkfDILRYDMGLNRWlkettipeirpckkplgfivldGELYVMTVLkgsdlnetrRSQQHKRAGCLFIqiyhprkktwryiftkppfpqpldfgtaimctvrl
Flexible Loop (DISEMBL)
MPPSSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFgaagsrissverYDVAKNewvsmdemprFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMqlkkkkktddhddgdrgtwrevgdmwdewersrigkivvmedenrgrpevfmldkFDILRYDMGLNRWLKettipeirpckkpLGFIVLDGELYVMTVLKGSDLNetrrsqqhkragclfiqiyhpRKKTWRYIFTkppfpqpldfgtAIMCTVRL
Low Complexity Region (SEG)
MPPSSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLkkkkktddhddgdRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Disordered region (IsUnstruct)
***********VATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVV******************TWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSD**********KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTV**
Disordered Region (DISOPRED)
***********************LPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Disordered Region (DISEMBL)
***********VATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQL*************RGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Disordered Region (DISPRO)
******************TLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPPSSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q0V7S6	442	F-box/kelch-repeat protei	yes	no	0.938	0.893	0.582	1e-139
O80582	409	F-box/kelch-repeat protei	no	no	0.501	0.515	0.282	4e-18
Q9M1W7	352	F-box/kelch-repeat protei	no	no	0.472	0.565	0.287	3e-13
Q9M1Y1	418	F-box/kelch-repeat protei	no	no	0.513	0.516	0.272	5e-13
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.484	0.542	0.262	8e-13
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.565	0.639	0.287	1e-11
Q9M8L2	354	F-box/kelch-repeat protei	no	no	0.489	0.581	0.291	2e-11
Q93W93	434	F-box/kelch-repeat protei	no	no	0.501	0.486	0.246	7e-11
Q0WW40	383	F-box/kelch-repeat protei	no	no	0.482	0.530	0.245	1e-10
Q9FZJ3	346	Putative F-box/kelch-repe	no	no	0.465	0.566	0.245	2e-09

>sp|Q0V7S6|FK125_ARATH F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/422 (58%), Positives = 311/422 (73%), Gaps = 27/422 (6%)

Query: 15  DETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRH-----KFNS 69
           D ++TLIPGL NDV  LIL+FVPY H SR+K TC+SW+ F SS+TL+  RH       N+
Sbjct: 33  DPSLTLIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNN 92

Query: 70  QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGS 129
            S LLCIFPQDPSIS PFLFD    + R LP +PCNP  Y LCNF +++LGPY+Y+LGGS
Sbjct: 93  LSHLLCIFPQDPSISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGS 152

Query: 130 HFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGS 188
            FD RS+PLD PLP+ S FR++F+   WER++PM+SPRGSFACAA+  S  +IIVAGGGS
Sbjct: 153 AFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGS 212

Query: 189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESG---------EFWV 239
           RH+LFGAAGSR+SSVE YDV K+EW  M+E+PRFRAGCVGF+ E            EFWV
Sbjct: 213 RHTLFGAAGSRMSSVEMYDVEKDEWRVMNELPRFRAGCVGFLVENEKEKEKEEEGREFWV 272

Query: 240 MGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI 299
           MGGYG SRT+SG+LPVDEYY+DAVVM L+        D G++  WR VGDMW E ER ++
Sbjct: 273 MGGYGGSRTVSGILPVDEYYKDAVVMDLRV-------DGGEK--WRVVGDMWGEEERPKL 323

Query: 300 GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELY 359
           GKIV ++    G+P  FMLDK  ILRY+MGLNRW KE+++P+     KP+GF+ L+GEL+
Sbjct: 324 GKIVAVDC---GKPVFFMLDKDWILRYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELH 380

Query: 360 VMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTV 419
           VM +L G +L +TR ++Q ++AG L I +Y P+KKTWR + +KPPF   LDF T +MCT+
Sbjct: 381 VMILLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTI 440

Query: 420 RL 421
           RL
Sbjct: 441 RL 442

Arabidopsis thaliana (taxid: 3702)

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 101/255 (39%), Gaps = 44/255 (17%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCI--- 76
           LIPGLP+++A   L  VP+  QS ++  CRSW    S  + + +R +      LLC+   
Sbjct: 19  LIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQP 78

Query: 77  ----FPQDPSISSPFLFDAANRACRPLPPLPCNP----STYS------------------ 110
                P   S+    + D         P + C P    S Y+                  
Sbjct: 79  LTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRVAFPEEEQIP 138

Query: 111 -LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGS 169
             C    +     I L+GG  +D  +       P+   +   F    W R APM   R  
Sbjct: 139 LFCECVVLQDAGKILLIGG--WDPETLQ-----PTRDVYVLEFAGRKWRRGAPMKESRSF 191

Query: 170 FACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGF 229
           FACA+V S  ++ VAGG           + + S E YDV K+EW S+  M   R  C GF
Sbjct: 192 FACASV-SPTKVYVAGGHDDQK------NALRSAEVYDVEKDEWSSVTPMTEGRDECQGF 244

Query: 230 VAEESGEFWVMGGYG 244
                  F V+ GYG
Sbjct: 245 AVGMGLRFCVLSGYG 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 20/219 (9%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
           L+ G+P  VA   LA VP      L+   RSW     S  L   R +  S   LLC+   
Sbjct: 11  LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAF 70

Query: 80  DPSISSPFLFDAANRACRPLPPLPCNPS-TYSLCNFTSISLGPYIYLLGGSHFDARSFPL 138
           DP      ++   +  C     LP  PS    L +F +++    +++LGG   DA S P+
Sbjct: 71  DPE----NIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGS-DAVS-PV 124

Query: 139 ----DRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFG 194
               D    +D  + ++F+   W   A M+ PR  FAC  ++   +I+VAGG      F 
Sbjct: 125 TGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQ--GKIVVAGG------FT 176

Query: 195 AAGSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFVAE 232
                IS  E YD   + W S+ ++ +   + C G V  
Sbjct: 177 TCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVN 215

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1Y1|SKI20_ARATH F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 99/261 (37%), Gaps = 45/261 (17%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
           LIPGLP ++A   L  VP+   S +K  CRSW    SSR+ + +R  F     LLC+   
Sbjct: 15  LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLVQP 74

Query: 80  DPSISSPFLFDAANRA--------------CRPLPPLPCNPSTYSL-------------- 111
             S  SP + +    +               + L P       Y L              
Sbjct: 75  LTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYNATLDTWHRVA 134

Query: 112 --------CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163
                   C   +I     + L+GG  +D  +    R +     F        + R  PM
Sbjct: 135 IPERIPLFCECVAIQDAGKVLLIGG--WDPETLQPVRDVFVLDFFAGEGSGRRFRRGRPM 192

Query: 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR 223
            + R  FACA+V S  ++ VAGG           + + S E YDV K+EW  +  M   R
Sbjct: 193 SAARSFFACASVGS-TKVYVAGGHDDQK------NALRSAEVYDVEKDEWSMLPPMTEGR 245

Query: 224 AGCVGFVAEESGEFWVMGGYG 244
             C GF       F V+ GYG
Sbjct: 246 DECHGFSMATDPGFCVLSGYG 266

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 21/225 (9%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
           LIPGLP+DVA   LA VP +    +   C+ W     S+  +  R       + L +   
Sbjct: 39  LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTM 98

Query: 80  DPSISSP--FLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFP 137
           +         + D   +    LPP+P    T     F  + +   + ++ G      S  
Sbjct: 99  NAGGKDNRWEVMDCLGQKLSSLPPMPGPAKT----GFKVVVVDGKLLVIAGCCMINGSL- 153

Query: 138 LDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAG 197
               + S   ++++    SW R+A +   R  FACA V     + V GG       G  G
Sbjct: 154 ----VASADVYQYDTCLNSWSRLADLEVARYDFACAEVN--GHVYVVGG------HGVDG 201

Query: 198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG 242
             +SS E YD     W  ++ + R R GC  F +  +G+ +VMGG
Sbjct: 202 ESLSSAEVYDPETCTWTFIESLRRPRWGC--FASAFNGKLYVMGG 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 125/316 (39%), Gaps = 78/316 (24%)

Query: 13  ATDETVT----LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFN 68
           A +ET T    LI GLPND+A L L  +PY + +  +    SW     ++T+   R  F+
Sbjct: 17  AEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSW-----NKTITNPRFLFS 71

Query: 69  SQSDLLCIFPQDPSISSPFLF----------------DAANRACRPLPPLPCNPSTYSLC 112
            QS          SISSP+LF                D A+     LPP+P         
Sbjct: 72  KQS---------LSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMP--------N 114

Query: 113 NFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFAC 172
           +FT IS  P+           + F L     + SA  +  LT  W  I+PM+SPR  F  
Sbjct: 115 SFTKIS-SPHALSCASMPRQGKLFVLGGGDVNRSAVVYTALTNRWSCISPMMSPRTYFVS 173

Query: 173 AAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE 232
             V   N  I+A GGS     G  G   + VE YD   + W  + ++P            
Sbjct: 174 GNV---NGKIMAVGGS----VGGNGEATTEVESYDPDNDTWTVVKKLPM----------- 215

Query: 233 ESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV-GDMW 291
                 V+  Y DS  I   + V E +    +     +       D D GTWRE+ G M 
Sbjct: 216 ------VLAKY-DSAVIGKEMCVTEGWAWPFMFPPMGQVY-----DSDEGTWREMSGGMK 263

Query: 292 DEWERSRIGKIVVMED 307
           + W     G  VV+ D
Sbjct: 264 EGW----TGVSVVIRD 275

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8L2|FBK30_ARATH F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 31/237 (13%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
           LIP LP+DVA   L    Y     +   CR+W    S    +  R K +  S  L I  Q
Sbjct: 3   LIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQR-KASRHSQELLILSQ 61

Query: 80  ---DPSISSPFL---------FDAANRACRPLPPLPCNPSTYSL-CNFTSISLGPYIYLL 126
              DP+ S   +          ++ +     LPP+P       L C    +S+G  + +L
Sbjct: 62  ARVDPAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRL--VSVGSDLIVL 119

Query: 127 GGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGG 186
           GG   D  ++        DS F F+FLT  W   A M   R SF   A  S   ++VAGG
Sbjct: 120 GG--LDPITWQ-----AHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGG 172

Query: 187 GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY 243
            +           ++S   YDV++++W  + +M R R  C       +G F V+GGY
Sbjct: 173 HNEEK------CALTSAMVYDVSEDKWTFLPDMARERDECKAVF--HAGRFHVIGGY 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 20/231 (8%)

Query: 20  LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
           L+PGLP+D+A   L  VP +   +L+  C+ W+   S       R       + + +F +
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 80  DPSISSPF-LFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPL 138
           D      +  FD  ++  +PLPP+P    + ++    ++  G ++YL GG        PL
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVP-REYSEAVGFGCAVLSGCHLYLFGGKD------PL 190

Query: 139 DRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS 198
              +       +N  T  W R   M+  R  F C  +   N + VAGG            
Sbjct: 191 RGSM--RRVIFYNARTNKWHRAPDMLRKRHFFGCCVIN--NCLYVAGGECE-----GIQR 241

Query: 199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTI 249
            + S E YD  KN W  + +M       +G V ++    W + G G  + +
Sbjct: 242 TLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKK---WFLKGLGSHQLV 289

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 9/212 (4%)

Query: 19  TLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFP 78
           ++IPGLP+D+A   +A + + +   L+   R W            + +       L +  
Sbjct: 7   SIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLT 66

Query: 79  QDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHF-DARSFP 137
           +  S +    +D       PLP        +    F  + +   + ++GG +     SFP
Sbjct: 67  ER-SKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSFP 125

Query: 138 LDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAG 197
             +P+ +    RF+     W+ +A M +PR  FAC +V    ++ VAGG    +L  + G
Sbjct: 126 HQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVS--GKVYVAGG---RNLTHSRG 180

Query: 198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGF 229
             I S E YD   + W  +  MPR +  C G 
Sbjct: 181 --IPSAEVYDPVADRWEELPAMPRPQMDCSGL 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZJ3|FBK16_ARATH Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 12/208 (5%)

Query: 11  LVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQ 70
           +V    +  +IPGL +DVA L ++ +P S      Q CR W  F  S+     R    + 
Sbjct: 1   MVVESSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTV 60

Query: 71  SDLLCIFPQDPSISSPF--LFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGG 128
            + LC+  +       +  +FDA+      +PP+P  P          +  G  ++  G 
Sbjct: 61  EEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVP-GPLKRGF-GVAVLDGGKIVFFGGY 118

Query: 129 SHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGS 188
           +  +           S   + F+    SW ++A M  PR +FA A V  L  +I      
Sbjct: 119 TEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTD 178

Query: 189 RHSLFGAAGSRISSVERYDVAKNEWVSM 216
            +SL        S+ E Y+   N+W  M
Sbjct: 179 TYSL--------SNAEVYNPKTNQWSLM 198

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
224062171	414	predicted protein [Populus trichocarpa]	0.961	0.978	0.624	1e-149
225437824	429	PREDICTED: F-box/kelch-repeat protein OR	0.923	0.906	0.635	1e-146
255559991	428	conserved hypothetical protein [Ricinus	0.942	0.927	0.617	1e-146
224085615	422	predicted protein [Populus trichocarpa]	0.976	0.973	0.606	1e-146
297744113	377	unnamed protein product [Vitis vinifera]	0.888	0.992	0.631	1e-139
22328264	442	F-box/kelch-repeat protein OR23 [Arabido	0.938	0.893	0.582	1e-137
297809833	438	kelch repeat-containing F-box family pro	0.938	0.901	0.587	1e-136
356503594	400	PREDICTED: F-box/kelch-repeat protein OR	0.919	0.967	0.596	1e-136
356570626	401	PREDICTED: F-box/kelch-repeat protein OR	0.916	0.962	0.600	1e-133
449468544	412	PREDICTED: F-box/kelch-repeat protein OR	0.950	0.970	0.566	1e-133

>gi|224062171|ref|XP_002300788.1| predicted protein [Populus trichocarpa] gi|222842514|gb|EEE80061.1| predicted protein [Populus trichocarpa]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/421 (62%), Positives = 319/421 (75%), Gaps = 16/421 (3%)

Query: 4   SSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFD 63
           SSL Q Q+   +ET TLIPGLPND+ASLIL+ +PYSH +R+K TC+SW  F SS   +F 
Sbjct: 7   SSLSQLQI---NETQTLIPGLPNDIASLILSLIPYSHHARVKPTCKSWHTFLSSTEALFS 63

Query: 64  RHKFNSQSD-LLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPY 122
             +   +S+ LL IFPQDPSIS+P+LFD  N A RPLP +PCNP+ Y LCNFTSIS+GP 
Sbjct: 64  LRRHPRRSNHLLIIFPQDPSISAPYLFDPQNLAWRPLPRMPCNPNVYGLCNFTSISMGPN 123

Query: 123 IYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQII 182
           +Y+LGGS FD RSFP+DRP P+ S FRFNF+ F WE++ PM+SPRGSFACAAV    QII
Sbjct: 124 LYVLGGSLFDTRSFPMDRPSPTSSVFRFNFVDFLWEKLCPMLSPRGSFACAAVPDSGQII 183

Query: 183 VAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESG--EFWVM 240
           VAGGGSRH+ FGAAGSRISSVERYDV K EWV+++ +PR+RAGCVGF++ +    EFWVM
Sbjct: 184 VAGGGSRHAWFGAAGSRISSVERYDVGKGEWVAIEGLPRYRAGCVGFLSGDGDEREFWVM 243

Query: 241 GGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIG 300
           GGYG+SRTISG+ PVDEYY+DAVVM LKK            G WREVGDMW +  R R+G
Sbjct: 244 GGYGESRTISGIFPVDEYYKDAVVMDLKKSGC---------GKWREVGDMWSDAGRGRLG 294

Query: 301 KIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYV 360
           KIVV+E E+ GRP VFMLD+ +I RYDM  N W +E+ +P   P     GF VLDGEL+V
Sbjct: 295 KIVVVE-EDEGRPAVFMLDENEIFRYDMASNSWQRESIVPRKAPHNSSCGFAVLDGELHV 353

Query: 361 MTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVR 420
           MT L+G DL +T+RS+Q KR G LF+QIYHP+KKTWR + T+PPF   LDF TAIMCT+R
Sbjct: 354 MTFLRGDDLVKTQRSRQQKRGGTLFVQIYHPKKKTWRSLVTRPPFCHSLDFKTAIMCTIR 413

Query: 421 L 421
           L
Sbjct: 414 L 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437824|ref|XP_002263239.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/403 (63%), Positives = 308/403 (76%), Gaps = 14/403 (3%)

Query: 21  IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD 80
           IPGLPNDV++LIL+ +PYS  +RLK   +SW LF SS+TL+  R   N QS LLC+FPQD
Sbjct: 39  IPGLPNDVSALILSMIPYSCLARLKSISKSWKLFLSSKTLISLRQN-NHQSQLLCLFPQD 97

Query: 81  PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDR 140
           P+I++PFLFD    A  PLPPLP NP  Y LCNFTSISLGP +Y+LGGS FD RSFPLDR
Sbjct: 98  PAIANPFLFDPKTLAWCPLPPLPINPYVYGLCNFTSISLGPNLYVLGGSLFDTRSFPLDR 157

Query: 141 PLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRI 200
           P PS S FRFNFLT+SWE ++PM+SPRGSFAC A+ + +QIIVAGGGSRH++FGAAGSR+
Sbjct: 158 PSPSSSVFRFNFLTYSWELLSPMLSPRGSFACVALPNSDQIIVAGGGSRHTMFGAAGSRM 217

Query: 201 SSVERYDVAKNEWVSMDEMPRFRAGCVGFVA--EESGEFWVMGGYGDSRTISGVLPVDEY 258
           SSVERYDV K+EWVS+D +PRFRAGCVGF+    E  EFWVMGGYG+SRT+SGV PVDEY
Sbjct: 218 SSVERYDVEKDEWVSLDGLPRFRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEY 277

Query: 259 YRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFML 318
           YRDAVVM+LKK            G WRE+GDMW+  ER R+GKIVV++DE  G P +FML
Sbjct: 278 YRDAVVMELKKG-----------GKWRELGDMWEAGERMRLGKIVVVDDEVGGAPAIFML 326

Query: 319 DKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQH 378
           D  +I RY M  NRWLKE+ +P         GF+VLDGELYV+T + G DL ETRRS+QH
Sbjct: 327 DGSEIFRYCMTSNRWLKESCVPRKASQDMSFGFVVLDGELYVITHMTGIDLTETRRSRQH 386

Query: 379 KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           KRA  +F+QIYHP+KKTWR + T+ PF  P+DF TA+  T+ L
Sbjct: 387 KRAATMFMQIYHPKKKTWRTLVTRSPFHYPIDFKTAVTSTICL 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559991|ref|XP_002521014.1| conserved hypothetical protein [Ricinus communis] gi|223539851|gb|EEF41431.1| conserved hypothetical protein [Ricinus communis]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/416 (61%), Positives = 311/416 (74%), Gaps = 19/416 (4%)

Query: 16  ETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLC 75
            T TLIPGLPNDVA+ IL+ VPYSH SR+KQT +SW+ F SS+TLV  R    + + LL 
Sbjct: 22  STSTLIPGLPNDVAAQILSTVPYSHHSRIKQTSKSWYTFLSSKTLVSLRQHLLNLNHLLV 81

Query: 76  IFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARS 135
           IFPQDPSISSP+LFD  N A +PL P+PCNP  Y LCNFTSISLGP +Y+LGGSHFD RS
Sbjct: 82  IFPQDPSISSPYLFDPKNLAWKPLLPMPCNPHVYGLCNFTSISLGPTLYVLGGSHFDTRS 141

Query: 136 FPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGA 195
           FP+DRP PS S FR+NF+   W++++PM+SPRGSFAC AV +  +IIVAGGGSRH+LFGA
Sbjct: 142 FPMDRPTPSSSVFRYNFIDSRWDQLSPMLSPRGSFACIAVPNSGKIIVAGGGSRHTLFGA 201

Query: 196 AGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGF-VAEESG--------EFWVMGGYGDS 246
           AGSR+SSVE YDV  ++W+ MD +P +RAGCVGF V   +G        E WVMGGYG+S
Sbjct: 202 AGSRMSSVEMYDVLADKWMRMDGLPGYRAGCVGFMVGNNNGEEEEEEEKELWVMGGYGES 261

Query: 247 RTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVME 306
           RTISGV PVDEYY+DAVVM L K   +          WRE+GDMW + ER+R+GK++V++
Sbjct: 262 RTISGVFPVDEYYKDAVVMNLNKNGGSK---------WREIGDMWHDGERARLGKVIVVD 312

Query: 307 DENRG-RPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLK 365
           D     RP VFMLD  +I RYD   N W KE+++P   PC    GF+VLDGELYVM +LK
Sbjct: 313 DYGSDHRPAVFMLDNNEIFRYDRVSNSWQKESSVPRKAPCNSSCGFVVLDGELYVMALLK 372

Query: 366 GSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           G+D  ETRRS+Q KRAG LFIQIYHPRKKTWR + TKPPF  PLDF +A+MCT+RL
Sbjct: 373 GADSTETRRSRQQKRAGALFIQIYHPRKKTWRSLVTKPPFHCPLDFNSAVMCTIRL 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085615|ref|XP_002307636.1| predicted protein [Populus trichocarpa] gi|222857085|gb|EEE94632.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/432 (60%), Positives = 317/432 (73%), Gaps = 21/432 (4%)

Query: 1   MPPSSLRQQQLVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSS-RT 59
           M PS+    QL   +ET TLIPG+PND+AS IL+ +PYSH SR+K TC+SW +F SS +T
Sbjct: 1   MAPSASSSSQL-QINETQTLIPGIPNDIASQILSMIPYSHHSRIKPTCKSWHIFLSSTKT 59

Query: 60  LVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL 119
           L   RH     + LL IFPQDP IS P+LFD  N A RPLPP+PCNP  Y LCNFTS+S+
Sbjct: 60  LFLLRHNLRHSNHLLIIFPQDPFISLPYLFDPQNLAWRPLPPMPCNPHVYGLCNFTSVSM 119

Query: 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLN 179
           GP +Y+LGGS FD RS+P+DRP P+ S FRFNF+ F WE++ PMISPRGSFAC AV   +
Sbjct: 120 GPNLYVLGGSLFDTRSYPIDRPSPTSSVFRFNFVDFLWEKLCPMISPRGSFACVAVPDWD 179

Query: 180 QIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA--EESGEF 237
           QIIVAGGGSRH+ FGAAGSRISSVERYDV K+EWV++D +PR+RAGC GF++   E  EF
Sbjct: 180 QIIVAGGGSRHTWFGAAGSRISSVERYDVGKDEWVAIDGLPRYRAGCAGFLSGNGEEKEF 239

Query: 238 WVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS 297
           WV+GGYG+SRTISG+ PVDEYY+DAVVM L+K            G WREVGDMW    R 
Sbjct: 240 WVVGGYGESRTISGIFPVDEYYKDAVVMDLEKNGC---------GKWREVGDMWGVAWRG 290

Query: 298 RIGKIVVMEDE--------NRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPL 349
           R+GKIVV+E+E         +GRP VFMLD  +I RYDM  N W KE+++P   P     
Sbjct: 291 RLGKIVVVEEEAEAEGLGVKQGRPVVFMLDGDEIFRYDMASNSWQKESSVPRKAPYNSSF 350

Query: 350 GFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPL 409
           GF+VLDGEL+VMT ++G DL ETRRS+Q KR G L +QIYHP+ KTWR + TKPPF  PL
Sbjct: 351 GFVVLDGELHVMTPVQGGDLMETRRSRQQKRGGTLLVQIYHPKMKTWRSLVTKPPFYYPL 410

Query: 410 DFGTAIMCTVRL 421
           DF TAIMCT++L
Sbjct: 411 DFKTAIMCTIQL 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744113|emb|CBI37083.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/388 (63%), Positives = 294/388 (75%), Gaps = 14/388 (3%)

Query: 36  VPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRA 95
           +PYS  +RLK   +SW LF SS+TL+  R   N QS LLC+FPQDP+I++PFLFD    A
Sbjct: 2   IPYSCLARLKSISKSWKLFLSSKTLISLRQN-NHQSQLLCLFPQDPAIANPFLFDPKTLA 60

Query: 96  CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTF 155
             PLPPLP NP  Y LCNFTSISLGP +Y+LGGS FD RSFPLDRP PS S FRFNFLT+
Sbjct: 61  WCPLPPLPINPYVYGLCNFTSISLGPNLYVLGGSLFDTRSFPLDRPSPSSSVFRFNFLTY 120

Query: 156 SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS 215
           SWE ++PM+SPRGSFAC A+ + +QIIVAGGGSRH++FGAAGSR+SSVERYDV K+EWVS
Sbjct: 121 SWELLSPMLSPRGSFACVALPNSDQIIVAGGGSRHTMFGAAGSRMSSVERYDVEKDEWVS 180

Query: 216 MDEMPRFRAGCVGFVA--EESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKT 273
           +D +PRFRAGCVGF+    E  EFWVMGGYG+SRT+SGV PVDEYYRDAVVM+LKK    
Sbjct: 181 LDGLPRFRAGCVGFLIGNGEEKEFWVMGGYGESRTVSGVFPVDEYYRDAVVMELKKG--- 237

Query: 274 DDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRW 333
                   G WRE+GDMW+  ER R+GKIVV++DE  G P +FMLD  +I RY M  NRW
Sbjct: 238 --------GKWRELGDMWEAGERMRLGKIVVVDDEVGGAPAIFMLDGSEIFRYCMTSNRW 289

Query: 334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK 393
           LKE+ +P         GF+VLDGELYV+T + G DL ETRRS+QHKRA  +F+QIYHP+K
Sbjct: 290 LKESCVPRKASQDMSFGFVVLDGELYVITHMTGIDLTETRRSRQHKRAATMFMQIYHPKK 349

Query: 394 KTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           KTWR + T+ PF  P+DF TA+  T+ L
Sbjct: 350 KTWRTLVTRSPFHYPIDFKTAVTSTICL 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328264|ref|NP_192212.2| F-box/kelch-repeat protein OR23 [Arabidopsis thaliana] gi|122223580|sp|Q0V7S6.1|FK125_ARATH RecName: Full=F-box/kelch-repeat protein OR23 gi|111074456|gb|ABH04601.1| At4g03030 [Arabidopsis thaliana] gi|332656863|gb|AEE82263.1| F-box/kelch-repeat protein OR23 [Arabidopsis thaliana]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/422 (58%), Positives = 311/422 (73%), Gaps = 27/422 (6%)

Query: 15  DETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRH-----KFNS 69
           D ++TLIPGL NDV  LIL+FVPY H SR+K TC+SW+ F SS+TL+  RH       N+
Sbjct: 33  DPSLTLIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNN 92

Query: 70  QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGS 129
            S LLCIFPQDPSIS PFLFD    + R LP +PCNP  Y LCNF +++LGPY+Y+LGGS
Sbjct: 93  LSHLLCIFPQDPSISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGS 152

Query: 130 HFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGS 188
            FD RS+PLD PLP+ S FR++F+   WER++PM+SPRGSFACAA+  S  +IIVAGGGS
Sbjct: 153 AFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGS 212

Query: 189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESG---------EFWV 239
           RH+LFGAAGSR+SSVE YDV K+EW  M+E+PRFRAGCVGF+ E            EFWV
Sbjct: 213 RHTLFGAAGSRMSSVEMYDVEKDEWRVMNELPRFRAGCVGFLVENEKEKEKEEEGREFWV 272

Query: 240 MGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI 299
           MGGYG SRT+SG+LPVDEYY+DAVVM L+        D G++  WR VGDMW E ER ++
Sbjct: 273 MGGYGGSRTVSGILPVDEYYKDAVVMDLRV-------DGGEK--WRVVGDMWGEEERPKL 323

Query: 300 GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELY 359
           GKIV ++    G+P  FMLDK  ILRY+MGLNRW KE+++P+     KP+GF+ L+GEL+
Sbjct: 324 GKIVAVDC---GKPVFFMLDKDWILRYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELH 380

Query: 360 VMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTV 419
           VM +L G +L +TR ++Q ++AG L I +Y P+KKTWR + +KPPF   LDF T +MCT+
Sbjct: 381 VMILLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTI 440

Query: 420 RL 421
           RL
Sbjct: 441 RL 442

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809833|ref|XP_002872800.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318637|gb|EFH49059.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/419 (58%), Positives = 308/419 (73%), Gaps = 24/419 (5%)

Query: 15  DETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRH-----KFNS 69
           D ++TLIPGL NDVA LIL+FVPY H SRLK TC+SW+ F SS+TL+  RH       N+
Sbjct: 32  DPSLTLIPGLSNDVARLILSFVPYPHISRLKPTCKSWYAFLSSKTLISLRHSRDNSNINN 91

Query: 70  QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGS 129
            S LLCIFPQDPSIS PFLFD    + R LP +PCNP  Y LCNF +++LGPY+Y+LGGS
Sbjct: 92  LSHLLCIFPQDPSISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGS 151

Query: 130 HFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGS 188
            FD RS+PLD PLP+ S FR++F+   WER++PM+SPRGSFACAA+  S ++IIVAGGGS
Sbjct: 152 AFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMVSPRGSFACAAMPGSSDRIIVAGGGS 211

Query: 189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA------EESGEFWVMGG 242
           RH+LFGAAGSR+SSVE YDV K+EW  M E+PRFRAGC+GF+       EE  EFWVMGG
Sbjct: 212 RHTLFGAAGSRMSSVEIYDVEKDEWREMVELPRFRAGCLGFLVGNEKEKEEDREFWVMGG 271

Query: 243 YGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKI 302
           YG SRT+SGVLPVDEYY+DA VM L+        D G++  WR VGDMW E  R ++GKI
Sbjct: 272 YGGSRTVSGVLPVDEYYKDAAVMDLRV-------DGGEK--WRIVGDMWGEEVRPKLGKI 322

Query: 303 VVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMT 362
           V ++    G+P  FMLDK  ILRY+ GLNRW KE+++P      KP+GF+ L+GEL VM 
Sbjct: 323 VAVDC---GKPVFFMLDKDWILRYEKGLNRWRKESSVPRKAHYDKPVGFVALNGELLVMI 379

Query: 363 VLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           +L G +L +TR ++Q ++AG L I +Y P+KKTWR + +KPPF   LDF T +MCT+RL
Sbjct: 380 LLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTIRL 438

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503594|ref|XP_003520592.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Glycine max]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/404 (59%), Positives = 291/404 (72%), Gaps = 17/404 (4%)

Query: 18  VTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIF 77
            TLIPGLPNDVA+ IL+ VPYSH  RLK TC+SW L  SS++ +      N ++ LLCIF
Sbjct: 14  ATLIPGLPNDVAASILSKVPYSHHGRLKATCKSWKLLLSSKSFL---ASLNKRNHLLCIF 70

Query: 78  PQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFP 137
           PQDPS++SPFLFD  + A  PLPP+PC+P  Y LCNF ++S+GP++Y+LGGS FD RSFP
Sbjct: 71  PQDPSLASPFLFDPNSLAWCPLPPMPCSPHVYGLCNFAAVSVGPHLYVLGGSLFDTRSFP 130

Query: 138 LDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAG 197
           +DRP PS + FRFNF  FSWE  A M+SPRGSFACA V +   I VAGGGSRH++FGAAG
Sbjct: 131 IDRPSPSSATFRFNFHDFSWEPRASMLSPRGSFACAVVPAGGSIYVAGGGSRHTMFGAAG 190

Query: 198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDE 257
           SRI S ERY+V ++ WV M+ +P FRAGCVGFV  E  EFWVMGGYG SRTISGV PVDE
Sbjct: 191 SRIRSAERYEVGRDRWVPMENLPGFRAGCVGFVGGEGREFWVMGGYGASRTISGVFPVDE 250

Query: 258 YYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFM 317
           YYRDAVVM ++             G WREVGDMW   ER R+GKIVV++D   G P +FM
Sbjct: 251 YYRDAVVMGVES------------GAWREVGDMWGNGERVRVGKIVVVDDN--GCPMLFM 296

Query: 318 LDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQ 377
           LD  +ILRYDM  NRWL E+ +P   P     G +VLDGELYV+T L   D  ETRRS+Q
Sbjct: 297 LDANEILRYDMSSNRWLYESRVPRKAPYNSSFGVVVLDGELYVVTHLCVVDFTETRRSRQ 356

Query: 378 HKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           HKRAG LFIQIY P+KKTWR +  K PF  P+D  +A++ ++ L
Sbjct: 357 HKRAGTLFIQIYDPKKKTWRSLVAKSPFHYPIDINSAVLSSICL 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570626|ref|XP_003553486.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/403 (60%), Positives = 286/403 (70%), Gaps = 17/403 (4%)

Query: 19  TLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFP 78
           TLIPGLPNDVA+ IL+ VPYSH  RLK TC+SW L  SS+   F     N ++ LLCIFP
Sbjct: 16  TLIPGLPNDVAASILSMVPYSHHGRLKATCKSWKLLLSSK---FFLASLNGKNHLLCIFP 72

Query: 79  QDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPL 138
           QDPSI+SPFLFD    A  PLP +PCNP  Y LCNF ++SLG ++Y+LGGS FD RSFP+
Sbjct: 73  QDPSIASPFLFDPNALAWCPLPLMPCNPHVYGLCNFAAVSLGSHLYVLGGSLFDTRSFPI 132

Query: 139 DRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS 198
           DRP PS + FRF+F  FSWE  A M+SPRGSFACA V +   I VAGGGSRH++FGAAGS
Sbjct: 133 DRPSPSSATFRFSFHDFSWEPRAQMLSPRGSFACAVVPARGSIYVAGGGSRHTMFGAAGS 192

Query: 199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEY 258
           RI SVERY+V ++ WV M+ +P FRAGCVGFV EE  EFWVMGGYG SRTISGV PVDEY
Sbjct: 193 RIRSVERYEVGRDRWVPMENLPGFRAGCVGFVGEEGREFWVMGGYGASRTISGVFPVDEY 252

Query: 259 YRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFML 318
           YRDAVVM ++             G WREVGDMW   ER R+GKIVV+  E  G P +FML
Sbjct: 253 YRDAVVMGVES------------GAWREVGDMWGNEERVRVGKIVVV--EYNGCPMLFML 298

Query: 319 DKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQH 378
           D  +ILRYDM  NRWL E+ +P   P     G +VLD ELYV+T L   D  ETRRS+QH
Sbjct: 299 DGNEILRYDMSSNRWLYESRVPRKAPYYSSFGVVVLDRELYVVTHLCVVDFTETRRSRQH 358

Query: 379 KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           KRAG LFIQIY P+ KTWR +  K PF  P+D  +A++ ++ L
Sbjct: 359 KRAGTLFIQIYDPKNKTWRSLVAKSPFNYPIDINSAVLSSICL 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468544|ref|XP_004151981.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Cucumis sativus] gi|449517128|ref|XP_004165598.1| PREDICTED: F-box/kelch-repeat protein OR23-like [Cucumis sativus]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/420 (56%), Positives = 304/420 (72%), Gaps = 20/420 (4%)

Query: 9   QQLVATDE---TVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRH 65
           Q   + DE   ++TLIPGLPNDVA+L+L+F+PYSH  RLK TC+SW LFFSS+ L+  R 
Sbjct: 6   QSYSSIDEIQTSITLIPGLPNDVAALLLSFLPYSHHDRLKSTCKSWRLFFSSKILISLRF 65

Query: 66  KF-NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIY 124
              NS S LLC FPQDP I+SPFLFD  + +   LPP+PCNP  Y LCNFT ISLGP++Y
Sbjct: 66  THPNSLSHLLCFFPQDPLIASPFLFDPFSLSWCHLPPMPCNPHVYGLCNFTPISLGPHLY 125

Query: 125 LLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVA 184
           ++GGS FD RSFP+ RP  S SAFRF+F +  WE I+ M+SPRGSFACAA+   +QI+VA
Sbjct: 126 VIGGSLFDTRSFPIGRPSSSSSAFRFDFHSSFWEPISSMLSPRGSFACAAIHDSSQILVA 185

Query: 185 GGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA--EESGEFWVMGG 242
           GGGSRH LF AAGSR+SSVERYDV ++EWV++D +P  RAGCVGF     E  EFWVMGG
Sbjct: 186 GGGSRHRLFAAAGSRMSSVERYDVERDEWVALDGLPTLRAGCVGFFVGNGEKREFWVMGG 245

Query: 243 YGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKI 302
           YG+SRTISG+ PVDEYYRDAVVM+L+             G WR++GDMW+E ER R+GKI
Sbjct: 246 YGESRTISGMFPVDEYYRDAVVMELRN------------GRWRQIGDMWEEGERRRLGKI 293

Query: 303 VVMEDE-NRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVM 361
           VV+E+  NRG+P +FMLD  + LRY+M  NRW++E+ +P         G + L+GELYV+
Sbjct: 294 VVIENHRNRGKPGIFMLDGDEFLRYEMASNRWVEESRVPRKTSSNSSYGLVALNGELYVI 353

Query: 362 TVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL 421
           + LK ++  E RR +   + G +++QIY+P+KKTWR + T  PF   LD  TA++CTVRL
Sbjct: 354 SFLK-TESAEARRLRHPTKGGSMYMQIYNPKKKTWRSLATWSPFNHSLDLDTAVICTVRL 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
TAIR|locus:2139350	442	AT4G03030 "AT4G03030" [Arabido	0.938	0.893	0.582	5.2e-129
TAIR|locus:2051879	409	AT2G44130 "AT2G44130" [Arabido	0.517	0.533	0.286	9.2e-14
TAIR|locus:2080432	418	AT3G59940 "AT3G59940" [Arabido	0.168	0.169	0.380	4.2e-13
TAIR|locus:2077299	352	AT3G63220 "AT3G63220" [Arabido	0.477	0.571	0.292	6e-13
TAIR|locus:2032855	383	AT1G16250 "AT1G16250" [Arabido	0.477	0.524	0.259	5.1e-11
TAIR|locus:2198958	354	AT1G80440 "AT1G80440" [Arabido	0.489	0.581	0.303	1.2e-10
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.456	0.516	0.299	3.2e-10
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.467	0.453	0.273	3.5e-10
TAIR|locus:2015979	346	AT1G27420 "AT1G27420" [Arabido	0.515	0.627	0.259	7e-10
TAIR|locus:2036119	359	AT1G15670 "AT1G15670" [Arabido	0.482	0.565	0.290	1.1e-08

TAIR|locus:2139350 AT4G03030 "AT4G03030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
 Identities = 246/422 (58%), Positives = 308/422 (72%)

Query:    15 DETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHK-----FNS 69
             D ++TLIPGL NDV  LIL+FVPY H SR+K TC+SW+ F SS+TL+  RH       N+
Sbjct:    33 DPSLTLIPGLSNDVGRLILSFVPYPHISRIKSTCKSWYAFLSSKTLISLRHSRDNSNTNN 92

Query:    70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGS 129
              S LLCIFPQDPSIS PFLFD    + R LP +PCNP  Y LCNF +++LGPY+Y+LGGS
Sbjct:    93 LSHLLCIFPQDPSISPPFLFDPVTLSWRSLPLMPCNPHVYGLCNFVAVALGPYVYVLGGS 152

Query:   130 HFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR-SLNQIIVAGGGS 188
              FD RS+PLD PLP+ S FR++F+   WER++PM+SPRGSFACAA+  S  +IIVAGGGS
Sbjct:   153 AFDTRSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRIIVAGGGS 212

Query:   189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE--------ESG-EFWV 239
             RH+LFGAAGSR+SSVE YDV K+EW  M+E+PRFRAGCVGF+ E        E G EFWV
Sbjct:   213 RHTLFGAAGSRMSSVEMYDVEKDEWRVMNELPRFRAGCVGFLVENEKEKEKEEEGREFWV 272

Query:   240 MGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDMWDEWERSRI 299
             MGGYG SRT+SG+LPVDEYY+DAVVM L                WR VGDMW E ER ++
Sbjct:   273 MGGYGGSRTVSGILPVDEYYKDAVVMDLRVDGGEK---------WRVVGDMWGEEERPKL 323

Query:   300 GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELY 359
             GKIV ++    G+P  FMLDK  ILRY+MGLNRW KE+++P+     KP+GF+ L+GEL+
Sbjct:   324 GKIVAVDC---GKPVFFMLDKDWILRYEMGLNRWRKESSVPKKAHYDKPVGFVALNGELH 380

Query:   360 VMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTV 419
             VM +L G +L +TR ++Q ++AG L I +Y P+KKTWR + +KPPF   LDF T +MCT+
Sbjct:   381 VMILLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSVVSKPPFNHQLDFRTTVMCTI 440

Query:   420 RL 421
             RL
Sbjct:   441 RL 442

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2051879 AT2G44130 "AT2G44130" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 9.2e-14, P = 9.2e-14
 Identities = 71/248 (28%), Positives = 99/248 (39%)

Query:    20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCI--- 76
             LIPGLP+++A   L  VP+  QS ++  CRSW    S  + + +R +      LLC+   
Sbjct:    19 LIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQP 78

Query:    77 ----FPQDPSISSPFLFDAANRACRPLPPLPCNP----STYSLCNFT----------SIS 118
                  P   S+    + D         P + C P    S Y+    T           I 
Sbjct:    79 LTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRVAFPEEEQIP 138

Query:   119 LGPYIYLL--GGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR 176
             L     +L   G       +  +   P+   +   F    W R APM   R  FACA+V 
Sbjct:   139 LFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKESRSFFACASV- 197

Query:   177 SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGE 236
             S  ++ VAGG           + + S E YDV K+EW S+  M   R  C GF       
Sbjct:   198 SPTKVYVAGGHDDQK------NALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLR 251

Query:   237 FWVMGGYG 244
             F V+ GYG
Sbjct:   252 FCVLSGYG 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080432 AT3G59940 "AT3G59940" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
 Identities = 27/71 (38%), Positives = 37/71 (52%)

Query:    20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
             LIPGLP ++A   L  VP+   S +K  CRSW    SSR+ + +R  F     LLC+   
Sbjct:    15 LIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLVQP 74

Query:    80 DPSISSPFLFD 90
               S  SP + +
Sbjct:    75 LTSPPSPAMME 85

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077299 AT3G63220 "AT3G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 65/222 (29%), Positives = 99/222 (44%)

Query:    16 ETVT-LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLL 74
             ET++ L+ G+P  VA   LA VP      L+   RSW     S  L   R +  S   LL
Sbjct:     6 ETMSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLL 65

Query:    75 CIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYS-LCNFTSISLGPYIYLLGGSHFDA 133
             C+   DP      ++   +  C     LP  PS    L +F +++    +++LGG   DA
Sbjct:    66 CVCAFDPEN----IWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGS-DA 120

Query:   134 RSFPL----DRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSR 189
              S P+    D    +D  + ++F+   W   A M+ PR  FAC  ++   +I+VAGG   
Sbjct:   121 VS-PVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQG--KIVVAGG--- 174

Query:   190 HSLFGAAGSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFV 230
                F      IS  E YD   + W S+ ++ +   + C G V
Sbjct:   175 ---FTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLV 213

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
 Identities = 55/212 (25%), Positives = 92/212 (43%)

Query:    19 TLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKF-NSQSDLLCIF 77
             ++IPGLP+D+A   +A + + +   L+   R W      R   +  +K  N  S      
Sbjct:     7 SIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLV--RGADYSCYKARNGWSGSWLFV 64

Query:    78 PQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDA-RSF 136
               + S +    +D       PLP        +    F  + +   + ++GG +  +  SF
Sbjct:    65 LTERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGGCYAPSVSSF 124

Query:   137 PLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA 196
             P  +P+ +    RF+     W+ +A M +PR  FAC +V    ++ VAGG    +L  + 
Sbjct:   125 PHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSG--KVYVAGG---RNLTHSR 179

Query:   197 GSRISSVERYDVAKNEWVSMDEMPRFRAGCVG 228
             G  I S E YD   + W  +  MPR +  C G
Sbjct:   180 G--IPSAEVYDPVADRWEELPAMPRPQMDCSG 209

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198958 AT1G80440 "AT1G80440" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 72/237 (30%), Positives = 105/237 (44%)

Query:    20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
             LIP LP+DVA   L    Y     +   CR+W    S    +  R K +  S  L I  Q
Sbjct:     3 LIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQR-KASRHSQELLILSQ 61

Query:    80 ---DPS-----ISSP----FLFDAANRACRPLPPLPCNPSTYSL-CNFTSISLGPYIYLL 126
                DP+     I++P     + ++ +     LPP+P       L C    +S+G  + +L
Sbjct:    62 ARVDPAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRL--VSVGSDLIVL 119

Query:   127 GGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGG 186
             GG   D  ++        DS F F+FLT  W   A M   R SF   A  S   ++VAGG
Sbjct:   120 GG--LDPITWQAH-----DSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGG 172

Query:   187 GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY 243
                H+    A   ++S   YDV++++W  + +M R R  C       +G F V+GGY
Sbjct:   173 ---HNEEKCA---LTSAMVYDVSEDKWTFLPDMARERDECKAVF--HAGRFHVIGGY 221

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 64/214 (29%), Positives = 93/214 (43%)

Query:    13 ATDETVT----LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFN 68
             A +ET T    LI GLPND+A L L  +PY + +  +    SW    ++   +F +   +
Sbjct:    17 AEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLS 76

Query:    69 SQSDLLCIFPQDPSISSPFL--FDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLL 126
               S  L +F  + S +       D A+     LPP+P N       +FT IS  P+    
Sbjct:    77 ISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMP-N-------SFTKIS-SPHALSC 127

Query:   127 GGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGG 186
                    + F L     + SA  +  LT  W  I+PM+SPR  F    V   N  I+A G
Sbjct:   128 ASMPRQGKLFVLGGGDVNRSAVVYTALTNRWSCISPMMSPRTYFVSGNV---NGKIMAVG 184

Query:   187 GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP 220
             GS     G  G   + VE YD   + W  + ++P
Sbjct:   185 GS----VGGNGEATTEVESYDPDNDTWTVVKKLP 214

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 59/216 (27%), Positives = 91/216 (42%)

Query:    20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQ 79
             L+PGLP+D+A   L  VP +   +L+  C+ W+   S       R       + + +F +
Sbjct:    78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query:    80 DPSISSPF-LFDAANRACRPLPPLPCNPSTYSLCNF-TSISLGPYIYLLGGSHFDARSFP 137
             D      +  FD  ++  +PLPP+P   S      F  ++  G ++YL GG        P
Sbjct:   138 DRDGKISWNTFDPISQLWQPLPPVPREYS--EAVGFGCAVLSGCHLYLFGGKD------P 189

Query:   138 LDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAG 197
             L R       F +N  T  W R   M+  R  F C  +   N + VAGG       G   
Sbjct:   190 L-RGSMRRVIF-YNARTNKWHRAPDMLRKRHFFGCCVIN--NCLYVAGGECE----GIQR 241

Query:   198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEE 233
             + + S E YD  KN W  + +M       +G V ++
Sbjct:   242 T-LRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDK 276

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2015979 AT1G27420 "AT1G27420" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
 Identities = 61/235 (25%), Positives = 98/235 (41%)

Query:    11 LVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQ 70
             +V    +  +IPGL +DVA L ++ +P S      Q CR W  F  S+     R    + 
Sbjct:     1 MVVESSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTV 60

Query:    71 SDLLCIFPQDPSISSPF--LFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGG 128
              + LC+  +       +  +FDA+      +PP+P  P         ++  G  I   GG
Sbjct:    61 EEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVP-GPLKRGFG--VAVLDGGKIVFFGG 117

Query:   129 SHFDARSFPLDRPLPSDSA--FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGG 186
              + +     ++    S SA  + F+    SW ++A M  PR +FA A V  L  +I    
Sbjct:   118 -YTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYS 176

Query:   187 GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG 241
                +SL        S+ E Y+   N+W S+   P  R    GF    S + + +G
Sbjct:   177 TDTYSL--------SNAEVYNPKTNQW-SLMHCPN-RPVWRGFAFAFSSKLYAVG 221

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036119 AT1G15670 "AT1G15670" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 71/244 (29%), Positives = 103/244 (42%)

Query:    20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRH-KFNSQSDLLCIFP 78
             LIP LP  VA   L    Y     +   C+ W    S     F RH K +  S  L +  
Sbjct:     3 LIPDLPETVAYECLLRSSYKQFPLMASVCKLWQREISLSD--FFRHRKASGHSQELVVLS 60

Query:    79 Q---DP---------SISSPF----LFDAANRACRPLPPLPCNPSTYSL-CNFTSISLGP 121
             Q   DP         +I +P     + +        LPP+P + +   L C    +S+G 
Sbjct:    61 QARVDPVKELVSGNKTIPTPVYRISVLELGTGLRSELPPVPGHSNGLPLFCRL--VSVGS 118

Query:   122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI--SPRGSFACAAVRSLN 179
              + +L G   D  ++       SDS F F+FLT +W R+   +   PR  FACA+    N
Sbjct:   119 DLVVLCG--LDPVTWRT-----SDSVFVFSFLTSTW-RVGKSMPGGPRSFFACASDSQRN 170

Query:   180 QIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWV 239
              + VAGG           + + S   YDVA++ W  + +M R R  C       +G+F V
Sbjct:   171 -VFVAGGHDEDK------NAMMSALVYDVAEDRWAFLPDMGRERDECTAIF--HAGKFHV 221

Query:   240 MGGY 243
             +GGY
Sbjct:   222 IGGY 225

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0V7S6	FK125_ARATH	No assigned EC number	0.5829	0.9382	0.8936	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	421
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	1e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-05
pfam01344	46	pfam01344, Kelch_1, Kelch motif	5e-05
smart00612	47	smart00612, Kelch, Kelch domain	4e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	6e-04
PHA02790	480	PHA02790, PHA02790, Kelch-like protein; Provisiona	0.003
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.004

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
             F S+ L   IY +GG +           L  +S   ++  T SW ++  +I PR    
Sbjct: 286 YCFGSVVLNNVIYFIGGMN--------KNNLSVNSVVSYDTKTKSWNKVPELIYPR---K 334

Query: 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA 231
              V   N  I   GG  +S        +++VE +   +++W   +E P         V 
Sbjct: 335 NPGVTVFNNRIYVIGGIYNS------ISLNTVESWKPGESKW--REEPPLIFPRYNPCVV 386

Query: 232 EESGEFWVMGG 242
             +   +V+GG
Sbjct: 387 NVNNLIYVIGG 397

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGG-SHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA 161
             +P   S     +I     IY++GG S+       +D     +    +N +T  W  ++
Sbjct: 420 KGSPLPISHYGGCAIYHDGKIYVIGGISY-------IDNIKVYNIVESYNPVTNKWTELS 472

Query: 162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW 213
            +  PR +   A++   N  I   GG ++         I+ +E YD   N W
Sbjct: 473 SLNFPRIN---ASLCIFNNKIYVVGGDKYE------YYINEIEVYDDKTNTW 515

Length = 534

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPR 167
              +++S+G  IY+ GG          +    S+    ++  T SWE++ P+ +PR
Sbjct: 3   TGHSAVSVGGKIYVFGGYS--------NGSKASNKVLVYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 39/223 (17%), Positives = 77/223 (34%), Gaps = 42/223 (18%)

Query: 39  SHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSD----------LL--CIF-----PQDP 81
           +  S +          ++  T      + N+  D          +L   I+      ++ 
Sbjct: 248 TFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNN 307

Query: 82  SISSPFL-FDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDR 140
              +  + +D   ++   +P L        +  F +      IY++GG +       ++ 
Sbjct: 308 LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNN-----RIYVIGGIYNSISLNTVES 362

Query: 141 PLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRI 200
             P +S          W    P+I PR +  C    + N I V GG S++         +
Sbjct: 363 WKPGESK---------WREEPPLIFPRYN-PCVVNVN-NLIYVIGGISKN------DELL 405

Query: 201 SSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY 243
            +VE + +  N+W     +P    G  G      G+ +V+GG 
Sbjct: 406 KTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIYVIGGI 446

Length = 534

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP 220
           PR       +    +I V GG             +SSVE YD   N W  +  MP
Sbjct: 1   PRSGAGVVVLG--GKIYVIGGYDGGQ-------SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 180 QIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGC 226
           +I V GG          G R+ SVE YD   N+W  +  MP  R+G 
Sbjct: 1   KIYVVGGFDG-------GQRLKSVEVYDPETNKWTPLPSMPTPRSGH 40

Length = 47

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 9/52 (17%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163
                + LG  IY++GG          D      S   ++  T +W ++  M
Sbjct: 3   SGAGVVVLGGKIYVIGGY---------DGGQSLSSVEVYDPETNTWSKLPSM 45

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 25/148 (16%)

Query: 109 YSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRG 168
           + +C  TS  +G  +YL+GG   +            ++A   N+++ +W  I PM SPR 
Sbjct: 262 FHMC--TSTHVGEVVYLIGGWMNNE---------IHNNAIAVNYISNNWIPIPPMNSPR- 309

Query: 169 SFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVG 228
               + V + N++ V GG              +SVER+      WV+M  + + R  C  
Sbjct: 310 -LYASGVPANNKLYVVGGLPNP----------TSVERWFHGDAAWVNMPSLLKPR--CNP 356

Query: 229 FVAEESGEFWVMGGYGDSRTISGVLPVD 256
            VA  +   +V+GG+ ++ T +  L  +
Sbjct: 357 AVASINNVIYVIGGHSETDTTTEYLLPN 384

Length = 480

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA 231
            +I V GG       G  G+R++ +  YD+  N W  + ++P  RAG    V 
Sbjct: 2   GKIYVFGG------LGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.98
PHA03098	534	kelch-like protein; Provisional	99.98
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
PHA02790	480	Kelch-like protein; Provisional	99.96
KOG1230	521	consensus Protein containing repeated kelch motifs	99.93
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.93
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.9
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.89
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.84
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.8
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.57
PF13964	50	Kelch_6: Kelch motif	99.27
PF13964	50	Kelch_6: Kelch motif	99.23
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.13
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.03
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.01
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.97
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.84
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.81
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.79
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.79
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.78
smart00612	47	Kelch Kelch domain.	98.72
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.72
smart00612	47	Kelch Kelch domain.	98.59
PLN02772	398	guanylate kinase	98.47
PLN02772	398	guanylate kinase	98.36
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.34
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.23
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.21
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.17
PF13854	42	Kelch_5: Kelch motif	98.15
PF13854	42	Kelch_5: Kelch motif	98.12
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.03
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.01
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.81
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.28
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.96
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.86
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.8
PF03089	337	RAG2: Recombination activating protein 2; InterPro	96.77
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.05
PF03089	337	RAG2: Recombination activating protein 2; InterPro	95.78
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.44
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.22
KOG2055	514	consensus WD40 repeat protein [General function pr	94.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.29
PRK11028	330	6-phosphogluconolactonase; Provisional	93.67
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.8
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.28
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.18
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.22
PRK13684	334	Ycf48-like protein; Provisional	90.59
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	90.45
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.79
PRK04792	448	tolB translocation protein TolB; Provisional	88.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.57
KOG2055	514	consensus WD40 repeat protein [General function pr	87.02
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.27
PRK00178	430	tolB translocation protein TolB; Provisional	84.6
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	83.88
KOG0310	487	consensus Conserved WD40 repeat-containing protein	83.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	83.58
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	82.61
PRK11028	330	6-phosphogluconolactonase; Provisional	82.19
PRK04922	433	tolB translocation protein TolB; Provisional	80.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	80.42

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.3e-45  Score=363.01  Aligned_cols=325  Identities=24%  Similarity=0.381  Sum_probs=255.5

Q ss_pred             CCCChHHHHHHHhcCCCc----chhHHHHhhhHhHHhhhcCCccccccc-ccc-cCCceEEEeCCCC----CCCccEEEe
Q 014650           21 IPGLPNDVASLILAFVPY----SHQSRLKQTCRSWFLFFSSRTLVFDRH-KFN-SQSDLLCIFPQDP----SISSPFLFD   90 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp~----~~~~~~~~v~k~W~~l~~~~~~~~~~~-~~~-~~~~~~~~~g~~~----~~~~~~~~d   90 (421)
                      +|-||...+.+++...+.    .....+-...++|+.++..+...+..+ +.. ...+.++++||..    ..+.+.+||
T Consensus       228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd  307 (571)
T KOG4441|consen  228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD  307 (571)
T ss_pred             ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence            367777777666665541    112223333456777776554322222 222 5667788888843    367789999


Q ss_pred             CCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccce
Q 014650           91 AANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF  170 (421)
Q Consensus        91 ~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~  170 (421)
                      |.+++|..+++||.+     |..+++++++|+||++||.+. +.       ..++++++|||.+++|..+++|+.+|..+
T Consensus       308 ~~~~~w~~~a~m~~~-----r~~~~~~~~~~~lYv~GG~~~-~~-------~~l~~ve~YD~~~~~W~~~a~M~~~R~~~  374 (571)
T KOG4441|consen  308 PKTNEWSSLAPMPSP-----RCRVGVAVLNGKLYVVGGYDS-GS-------DRLSSVERYDPRTNQWTPVAPMNTKRSDF  374 (571)
T ss_pred             CCcCcEeecCCCCcc-----cccccEEEECCEEEEEccccC-CC-------cccceEEEecCCCCceeccCCccCccccc
Confidence            999999999999976     889999999999999999863 11       36799999999999999999999999999


Q ss_pred             EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCcccc
Q 014650          171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTIS  250 (421)
Q Consensus       171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~  250 (421)
                      ++++++  |.||++||.+       +...++++|+|||.+++|+.+++|+.+|+++++++..  ++||++||.++..   
T Consensus       375 ~v~~l~--g~iYavGG~d-------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g~iYi~GG~~~~~---  440 (571)
T KOG4441|consen  375 GVAVLD--GKLYAVGGFD-------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--GKLYIIGGGDGSS---  440 (571)
T ss_pred             eeEEEC--CEEEEEeccc-------cccccccEEEecCCCCcccccCCCCcceeeeEEEEEC--CEEEEEcCcCCCc---
Confidence            999999  9999999986       5577899999999999999999999999887766665  8999999988765   


Q ss_pred             ccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccccc------CeEEEEccccCCCceEEEecCCceE
Q 014650          251 GVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVMEDENRGRPEVFMLDKFDIL  324 (421)
Q Consensus       251 ~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~------g~i~v~GG~~~g~~~~~~~~~~~v~  324 (421)
                            ...+.+++            |||.+++|+.+++|..+  |..+      ++||++||. ++...     ...|+
T Consensus       441 ------~~l~sve~------------YDP~t~~W~~~~~M~~~--R~~~g~a~~~~~iYvvGG~-~~~~~-----~~~VE  494 (571)
T KOG4441|consen  441 ------NCLNSVEC------------YDPETNTWTLIAPMNTR--RSGFGVAVLNGKIYVVGGF-DGTSA-----LSSVE  494 (571)
T ss_pred             ------cccceEEE------------EcCCCCceeecCCcccc--cccceEEEECCEEEEECCc-cCCCc-----cceEE
Confidence                  12333444            45555699999999984  4433      799999998 56322     25699


Q ss_pred             EEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCC
Q 014650          325 RYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPP  404 (421)
Q Consensus       325 ~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~  404 (421)
                      +|||.+++|+.+++|+.   +|...++++++++||++||+++...+             ..|++|||++++|+.... | 
T Consensus       495 ~ydp~~~~W~~v~~m~~---~rs~~g~~~~~~~ly~vGG~~~~~~l-------------~~ve~ydp~~d~W~~~~~-~-  556 (571)
T KOG4441|consen  495 RYDPETNQWTMVAPMTS---PRSAVGVVVLGGKLYAVGGFDGNNNL-------------NTVECYDPETDTWTEVTE-P-  556 (571)
T ss_pred             EEcCCCCceeEcccCcc---ccccccEEEECCEEEEEecccCcccc-------------ceeEEcCCCCCceeeCCC-c-
Confidence            99999999999998887   56889999999999999999887755             789999999999999875 4 


Q ss_pred             CCCCCCccceeEE
Q 014650          405 FPQPLDFGTAIMC  417 (421)
Q Consensus       405 ~~~~~~~~~~~~~  417 (421)
                       ...+..++++++
T Consensus       557 -~~~~~~~~~~~~  568 (571)
T KOG4441|consen  557 -ESGRGGAGVAVI  568 (571)
T ss_pred             -cccccCcceEEe
Confidence             444555555443

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-41  Score=336.87  Aligned_cols=277  Identities=17%  Similarity=0.295  Sum_probs=210.2

Q ss_pred             eEEEeCCCC--CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           73 LLCIFPQDP--SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        73 ~~~~~g~~~--~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      .++++|+..  ....+++|||.+++|..+++||.+     |.++++++++++|||+||.+...        ...+++++|
T Consensus       259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~-----r~~~~~a~l~~~IYviGG~~~~~--------~~~~~v~~Y  325 (557)
T PHA02713        259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH-----IINYASAIVDNEIIIAGGYNFNN--------PSLNKVYKI  325 (557)
T ss_pred             EEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc-----ccceEEEEECCEEEEEcCCCCCC--------CccceEEEE
Confidence            455554421  224678999999999999999976     78899999999999999974222        246889999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      ||.+++|..+++|+.+|..+++++++  ++||++||.+       +....+++++||+.+++|+.+++||.+|..+++++
T Consensus       326 d~~~n~W~~~~~m~~~R~~~~~~~~~--g~IYviGG~~-------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~  396 (557)
T PHA02713        326 NIENKIHVELPPMIKNRCRFSLAVID--DTIYAIGGQN-------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV  396 (557)
T ss_pred             ECCCCeEeeCCCCcchhhceeEEEEC--CEEEEECCcC-------CCCCCceEEEEECCCCeEEECCCCCcccccccEEE
Confidence            99999999999999999999999999  9999999975       23457889999999999999999999998877666


Q ss_pred             EccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc----cccCeEEEEc
Q 014650          231 AEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER----SRIGKIVVME  306 (421)
Q Consensus       231 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~----~~~g~i~v~G  306 (421)
                      +.  ++||++||.++.....+.    ...+++..-+........|.|||++++|+.+++|+.+...    ...++||++|
T Consensus       397 ~~--g~IYviGG~~~~~~~~~~----~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~G  470 (557)
T PHA02713        397 LD--QYIYIIGGRTEHIDYTSV----HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVC  470 (557)
T ss_pred             EC--CEEEEEeCCCcccccccc----cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEe
Confidence            65  899999998653211000    0000000000000001125577777799999999774222    2237999999


Q ss_pred             cccCCCceEEEecCCceEEEeCCC-CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeE
Q 014650          307 DENRGRPEVFMLDKFDILRYDMGL-NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLF  385 (421)
Q Consensus       307 G~~~g~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                      |. ++...    ....+++|||.+ ++|+.+++||.   +|..+++++++|+||++||+++.                ..
T Consensus       471 G~-~~~~~----~~~~ve~Ydp~~~~~W~~~~~m~~---~r~~~~~~~~~~~iyv~Gg~~~~----------------~~  526 (557)
T PHA02713        471 DI-KDEKN----VKTCIFRYNTNTYNGWELITTTES---RLSALHTILHDNTIMMLHCYESY----------------ML  526 (557)
T ss_pred             CC-CCCCc----cceeEEEecCCCCCCeeEccccCc---ccccceeEEECCEEEEEeeecce----------------ee
Confidence            97 33221    114689999999 89999999988   56889999999999999998853                36


Q ss_pred             EEEEeCCcceeeEecc
Q 014650          386 IQIYHPRKKTWRYIFT  401 (421)
Q Consensus       386 v~~yd~~~~~W~~i~~  401 (421)
                      +++||+.+++|+.+++
T Consensus       527 ~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        527 QDTFNVYTYEWNHICH  542 (557)
T ss_pred             hhhcCcccccccchhh
Confidence            8999999999999864

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=3.9e-36  Score=285.76  Aligned_cols=274  Identities=18%  Similarity=0.273  Sum_probs=193.3

Q ss_pred             CCCCcEEECCC----CCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC-C
Q 014650           91 AANRACRPLPP----LPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI-S  165 (421)
Q Consensus        91 ~~~~~W~~l~~----l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~  165 (421)
                      +...+|..++.    +|.|     |..|++++++++|||+||......       ...+++++||+.+++|+.+++++ .
T Consensus         4 ~~~~~W~~~~~~~~~~P~p-----R~~h~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~yd~~~~~W~~~~~~~~~   71 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGP-----RCSHGIAVVGDKLYSFGGELKPNE-------HIDKDLYVFDFNTHTWSIAPANGDV   71 (341)
T ss_pred             ccCCeEEEecCCCCCCCCC-----CCcceEEEECCEEEEECCccCCCC-------ceeCcEEEEECCCCEEEEcCccCCC
Confidence            36678999976    5544     899999999999999999753221       24578999999999999998764 3


Q ss_pred             Cc---cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC-----CCCCCCeeEEEEccCCeE
Q 014650          166 PR---GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-----PRFRAGCVGFVAEESGEF  237 (421)
Q Consensus       166 ~r---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~~~i  237 (421)
                      +|   .+|++++++  ++||++||.+       .....+++++||+++++|+.+++|     |.+|..|++++..  ++|
T Consensus        72 p~~~~~~~~~~~~~--~~iyv~GG~~-------~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~~i  140 (341)
T PLN02153         72 PRISCLGVRMVAVG--TKLYIFGGRD-------EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--NHV  140 (341)
T ss_pred             CCCccCceEEEEEC--CEEEEECCCC-------CCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--CEE
Confidence            44   368889999  9999999975       234577899999999999999887     7888877766554  899


Q ss_pred             EEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccc-cccc------ccCeEEEEcccc-
Q 014650          238 WVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE-WERS------RIGKIVVMEDEN-  309 (421)
Q Consensus       238 yv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~------~~g~i~v~GG~~-  309 (421)
                      ||+||.+........    ..++++++||+            ++++|+.++.+..+ .+|.      ..+++|++||.. 
T Consensus       141 yv~GG~~~~~~~~~~----~~~~~v~~yd~------------~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~  204 (341)
T PLN02153        141 YVFGGVSKGGLMKTP----ERFRTIEAYNI------------ADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFAT  204 (341)
T ss_pred             EEECCccCCCccCCC----cccceEEEEEC------------CCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccc
Confidence            999998643211100    12334445554            45599999876421 1232      237899999861 


Q ss_pred             ----CCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeE
Q 014650          310 ----RGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLF  385 (421)
Q Consensus       310 ----~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~  385 (421)
                          +|... +  ..+++++||+.+++|+++..+...+.+|..+++++++++|||+||....+..    .+.......++
T Consensus       205 ~~~~gG~~~-~--~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~~~n~  277 (341)
T PLN02153        205 SILPGGKSD-Y--ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLK----GHLGPGTLSNE  277 (341)
T ss_pred             ccccCCccc-e--ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccc----ccccccccccc
Confidence                11111 1  2368999999999999997643323367889999999999999997422100    00011233468


Q ss_pred             EEEEeCCcceeeEeccc--CCCCCCCC
Q 014650          386 IQIYHPRKKTWRYIFTK--PPFPQPLD  410 (421)
Q Consensus       386 v~~yd~~~~~W~~i~~~--p~~~~~~~  410 (421)
                      +++||+++++|+.+...  |++|..+.
T Consensus       278 v~~~d~~~~~W~~~~~~~~~~~pr~~~  304 (341)
T PLN02153        278 GYALDTETLVWEKLGECGEPAMPRGWT  304 (341)
T ss_pred             EEEEEcCccEEEeccCCCCCCCCCccc
Confidence            99999999999998643  44444443

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.7e-35  Score=290.03  Aligned_cols=291  Identities=14%  Similarity=0.134  Sum_probs=206.7

Q ss_pred             CceEEEeCCC--CCCCccEE--EeCCC----CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCC
Q 014650           71 SDLLCIFPQD--PSISSPFL--FDAAN----RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL  142 (421)
Q Consensus        71 ~~~~~~~g~~--~~~~~~~~--~d~~~----~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  142 (421)
                      ...|+.|.|.  ..++.+-.  ++|.+    ++|..++++...|  .+|.+|++++++++|||+||......       .
T Consensus       120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P--~pR~~h~~~~~~~~iyv~GG~~~~~~-------~  190 (470)
T PLN02193        120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGP--GLRCSHGIAQVGNKIYSFGGEFTPNQ-------P  190 (470)
T ss_pred             CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCC--CCccccEEEEECCEEEEECCcCCCCC-------C
Confidence            3445555442  23344434  47655    8999987642111  34999999999999999999743221       2


Q ss_pred             CCCeEEEEeCccCceeecccc---CC-CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          143 PSDSAFRFNFLTFSWERIAPM---IS-PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       143 ~~~~v~~yd~~t~~W~~~~~~---~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      ..+++|+||+.+++|+.++++   |. .|..|++++++  ++|||+||.+       ....++++++||+.+++|+.+++
T Consensus       191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--~~lYvfGG~~-------~~~~~ndv~~yD~~t~~W~~l~~  261 (470)
T PLN02193        191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--STLYVFGGRD-------ASRQYNGFYSFDTTTNEWKLLTP  261 (470)
T ss_pred             eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--CEEEEECCCC-------CCCCCccEEEEECCCCEEEEcCc
Confidence            346899999999999988653   33 25688899999  9999999975       23457899999999999999988


Q ss_pred             C---CCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccc-cc
Q 014650          219 M---PRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EW  294 (421)
Q Consensus       219 ~---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~  294 (421)
                      +   |.+|..|++++..  ++|||+||.+...          ..+++++||+.+            ++|+.++.... +.
T Consensus       262 ~~~~P~~R~~h~~~~~~--~~iYv~GG~~~~~----------~~~~~~~yd~~t------------~~W~~~~~~~~~~~  317 (470)
T PLN02193        262 VEEGPTPRSFHSMAADE--ENVYVFGGVSATA----------RLKTLDSYNIVD------------KKWFHCSTPGDSFS  317 (470)
T ss_pred             CCCCCCCccceEEEEEC--CEEEEECCCCCCC----------CcceEEEEECCC------------CEEEeCCCCCCCCC
Confidence            7   7889888766654  8999999986543          223345555555            59999875211 11


Q ss_pred             ccc------ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCC
Q 014650          295 ERS------RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSD  368 (421)
Q Consensus       295 ~~~------~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~  368 (421)
                      .|.      ..+++|++||. ++..      .+++++||+.+++|+.+.++...+.+|..++++.++++|||+||.....
T Consensus       318 ~R~~~~~~~~~gkiyviGG~-~g~~------~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~  390 (470)
T PLN02193        318 IRGGAGLEVVQGKVWVVYGF-NGCE------VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMD  390 (470)
T ss_pred             CCCCcEEEEECCcEEEEECC-CCCc------cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCc
Confidence            232      23789999987 4431      3789999999999999987744444788899999999999999986422


Q ss_pred             ccccccccccccceeeEEEEEeCCcceeeEecccC---CCCCCCCccce
Q 014650          369 LNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP---PFPQPLDFGTA  414 (421)
Q Consensus       369 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p---~~~~~~~~~~~  414 (421)
                      ..    .........+++++||+.+++|+.+..++   ..|.+|.++++
T Consensus       391 ~~----~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~  435 (470)
T PLN02193        391 PL----AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTAS  435 (470)
T ss_pred             cc----cccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccc
Confidence            10    00011234468999999999999998655   24666666654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=8.9e-37  Score=304.11  Aligned_cols=257  Identities=21%  Similarity=0.344  Sum_probs=203.9

Q ss_pred             hHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEE
Q 014650           41 QSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTS  116 (421)
Q Consensus        41 ~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~  116 (421)
                      ...+....+.|..+...+. .+.+......++.+|+.||..    ..+++++|||.+++|..+++|+.+     |..+++
T Consensus       303 ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-----R~~~~v  376 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-----RSDFGV  376 (571)
T ss_pred             eEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-----ccccee
Confidence            3344555667888776663 222333566788999999843    567899999999999999999976     999999


Q ss_pred             EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650          117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA  196 (421)
Q Consensus       117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  196 (421)
                      ++++|.||++||.+..         ..++++++|||.+++|..+++|+.+|.+|++++++  ++||++||.++.      
T Consensus       377 ~~l~g~iYavGG~dg~---------~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g~iYi~GG~~~~------  439 (571)
T KOG4441|consen  377 AVLDGKLYAVGGFDGE---------KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--GKLYIIGGGDGS------  439 (571)
T ss_pred             EEECCEEEEEeccccc---------cccccEEEecCCCCcccccCCCCcceeeeEEEEEC--CEEEEEcCcCCC------
Confidence            9999999999998633         36889999999999999999999999999999999  999999998632      


Q ss_pred             CCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCC
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDH  276 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~  276 (421)
                      ...++++++|||.+++|+.+++|+.+|..+..+++.  ++||++||.++...+..          +            |.
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~--~~iYvvGG~~~~~~~~~----------V------------E~  495 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN--GKIYVVGGFDGTSALSS----------V------------ER  495 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccceEEEEC--CEEEEECCccCCCccce----------E------------EE
Confidence            238999999999999999999999999887655554  89999999988432222          2            44


Q ss_pred             CCCCCCCceEecCcccccccc----ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEE
Q 014650          277 DDGDRGTWREVGDMWDEWERS----RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFI  352 (421)
Q Consensus       277 yd~~~~~W~~~~~~~~~~~~~----~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~  352 (421)
                      |||++++|+.+++|..+....    ..+++|++||. +|..     ..+.|+.|||++++|+...+ +..  .|...+++
T Consensus       496 ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~-~~~~-----~l~~ve~ydp~~d~W~~~~~-~~~--~~~~~~~~  566 (571)
T KOG4441|consen  496 YDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF-DGNN-----NLNTVECYDPETDTWTEVTE-PES--GRGGAGVA  566 (571)
T ss_pred             EcCCCCceeEcccCccccccccEEEECCEEEEEecc-cCcc-----ccceeEEcCCCCCceeeCCC-ccc--cccCcceE
Confidence            677777999999888742222    23799999998 5554     34789999999999999988 442  34444444


Q ss_pred             E
Q 014650          353 V  353 (421)
Q Consensus       353 ~  353 (421)
                      +
T Consensus       567 ~  567 (571)
T KOG4441|consen  567 V  567 (571)
T ss_pred             E
Confidence            4

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=6e-36  Score=301.66  Aligned_cols=258  Identities=17%  Similarity=0.250  Sum_probs=201.9

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .....|++..++|..+++.+.      +..|++++.+++||++||.....        ...+++++||+.+++|..+++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lyv~GG~~~~~--------~~~~~v~~yd~~~~~W~~~~~~  329 (534)
T PHA03098        264 YNYITNYSPLSEINTIIDIHY------VYCFGSVVLNNVIYFIGGMNKNN--------LSVNSVVSYDTKTKSWNKVPEL  329 (534)
T ss_pred             ceeeecchhhhhcccccCccc------cccceEEEECCEEEEECCCcCCC--------CeeccEEEEeCCCCeeeECCCC
Confidence            345678888999998876663      34568889999999999985433        2457899999999999999999


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEecc
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                      +.+|..|++++++  ++||++||..       .....+++++||+.+++|+.+++||.+|..++++++.  ++||++||.
T Consensus       330 ~~~R~~~~~~~~~--~~lyv~GG~~-------~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~--~~iYv~GG~  398 (534)
T PHA03098        330 IYPRKNPGVTVFN--NRIYVIGGIY-------NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN--NLIYVIGGI  398 (534)
T ss_pred             CcccccceEEEEC--CEEEEEeCCC-------CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC--CEEEEECCc
Confidence            9999999999999  9999999975       3355788999999999999999999999888776654  899999997


Q ss_pred             CCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc----ccCeEEEEccccCCCceEEEec
Q 014650          244 GDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS----RIGKIVVMEDENRGRPEVFMLD  319 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~----~~g~i~v~GG~~~g~~~~~~~~  319 (421)
                      ....         ...+.+++|            |+.+++|+.+++++.+....    ..+++|++||. .+.....  .
T Consensus       399 ~~~~---------~~~~~v~~y------------d~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~--~  454 (534)
T PHA03098        399 SKND---------ELLKTVECF------------SLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI-SYIDNIK--V  454 (534)
T ss_pred             CCCC---------cccceEEEE------------eCCCCeeeecCCCCccccCceEEEECCEEEEECCc-cCCCCCc--c
Confidence            5432         112334455            45555999999887642211    23789999997 2221111  1


Q ss_pred             CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEe
Q 014650          320 KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI  399 (421)
Q Consensus       320 ~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i  399 (421)
                      ...+++||+.+++|+.+++++.   +|..++++.++++|||+||.++...             .+++++||+++++|+.+
T Consensus       455 ~~~v~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~-------------~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        455 YNIVESYNPVTNKWTELSSLNF---PRINASLCIFNNKIYVVGGDKYEYY-------------INEIEVYDDKTNTWTLF  518 (534)
T ss_pred             cceEEEecCCCCceeeCCCCCc---ccccceEEEECCEEEEEcCCcCCcc-------------cceeEEEeCCCCEEEec
Confidence            2459999999999999998876   4678888899999999999875431             36899999999999999


Q ss_pred             cccCCCC
Q 014650          400 FTKPPFP  406 (421)
Q Consensus       400 ~~~p~~~  406 (421)
                      +.+|+..
T Consensus       519 ~~~p~~~  525 (534)
T PHA03098        519 CKFPKVI  525 (534)
T ss_pred             CCCcccc
Confidence            8877544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.6e-33  Score=268.77  Aligned_cols=265  Identities=13%  Similarity=0.162  Sum_probs=185.5

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeC--CCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDA--ANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~--~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      ...++.||++||.. .+++++||+  .+++|..+++||..    +|..+++++++++|||+||.......   +....++
T Consensus        14 ~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~----~R~~~~~~~~~~~iYv~GG~~~~~~~---~~~~~~~   85 (346)
T TIGR03547        14 AIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGG----PRNQAVAAAIDGKLYVFGGIGKANSE---GSPQVFD   85 (346)
T ss_pred             EEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCC----CcccceEEEECCEEEEEeCCCCCCCC---Ccceecc
Confidence            34577889988853 356899996  67899999999842    28889999999999999997532100   0112467


Q ss_pred             eEEEEeCccCceeecc-ccCCCccceEEE-EEccCCEEEEEcCCcccc---c------cCC------------------C
Q 014650          146 SAFRFNFLTFSWERIA-PMISPRGSFACA-AVRSLNQIIVAGGGSRHS---L------FGA------------------A  196 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~~~iyv~GG~~~~~---~------~~~------------------~  196 (421)
                      ++|+||+.+++|+.++ ++|.+|.+++++ +++  ++||++||.+...   .      ++.                  .
T Consensus        86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~--g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T TIGR03547        86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN--GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED  163 (346)
T ss_pred             cEEEEECCCCEEecCCCCCCCcccceeEEEEeC--CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence            8999999999999997 456677777776 678  9999999975210   0      000                  0


Q ss_pred             CCccceEEEEECCCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD  275 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~  275 (421)
                      ...++++++||+.+++|+.+++||. +|..+++++ .+ ++|||+||...... .        ...+++|+         
T Consensus       164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~-~~-~~iyv~GG~~~~~~-~--------~~~~~~y~---------  223 (346)
T TIGR03547       164 YFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVH-KG-NKLLLINGEIKPGL-R--------TAEVKQYL---------  223 (346)
T ss_pred             cCccceEEEEECCCCceeECccCCCCcCCCceEEE-EC-CEEEEEeeeeCCCc-c--------chheEEEE---------
Confidence            0124789999999999999999996 566554444 44 89999999754321 0        11122333         


Q ss_pred             CCCCCCCCceEecCcccccc-----------ccccCeEEEEccccC-CCc------eEEEe----cCCceEEEeCCCCce
Q 014650          276 HDDGDRGTWREVGDMWDEWE-----------RSRIGKIVVMEDENR-GRP------EVFML----DKFDILRYDMGLNRW  333 (421)
Q Consensus       276 ~yd~~~~~W~~~~~~~~~~~-----------~~~~g~i~v~GG~~~-g~~------~~~~~----~~~~v~~yd~~~~~W  333 (421)
                       ||+++++|+.+++|+.+..           ....++||++||... +..      ..+..    ....+++||+++++|
T Consensus       224 -~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W  302 (346)
T TIGR03547       224 -FTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW  302 (346)
T ss_pred             -ecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence             2344559999999976421           113479999999720 100      01111    113589999999999


Q ss_pred             eEecccCCCCCCCCceEEEEeCCeEEEEEeecC
Q 014650          334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKG  366 (421)
Q Consensus       334 ~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~  366 (421)
                      +.+.+||.+   |..+++++++++|||+||.+.
T Consensus       303 ~~~~~lp~~---~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       303 SKVGKLPQG---LAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             cccCCCCCC---ceeeEEEEcCCEEEEEeccCC
Confidence            999999874   567788889999999999864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=2.3e-33  Score=269.72  Aligned_cols=285  Identities=13%  Similarity=0.173  Sum_probs=199.0

Q ss_pred             cccCCceEEEeCCCCCCCccEEEeCC--CCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCC
Q 014650           67 FNSQSDLLCIFPQDPSISSPFLFDAA--NRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~d~~--~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      ....++.+|++||.. .+.++.||..  +++|..+++||.+    +|.++++++++++|||+||.......   +....+
T Consensus        34 ~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~----~r~~~~~v~~~~~IYV~GG~~~~~~~---~~~~~~  105 (376)
T PRK14131         34 GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGG----PREQAVAAFIDGKLYVFGGIGKTNSE---GSPQVF  105 (376)
T ss_pred             EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCC----CcccceEEEECCEEEEEcCCCCCCCC---CceeEc
Confidence            344577888887742 3458899986  4789999998852    38889999999999999997531100   011246


Q ss_pred             CeEEEEeCccCceeeccc-cCCCccceEEEE-EccCCEEEEEcCCcccc---c---------------------cCC---
Q 014650          145 DSAFRFNFLTFSWERIAP-MISPRGSFACAA-VRSLNQIIVAGGGSRHS---L---------------------FGA---  195 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~~~iyv~GG~~~~~---~---------------------~~~---  195 (421)
                      +++|+||+.+++|+.+++ +|.++.+|++++ .+  ++||++||.+...   .                     |..   
T Consensus       106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~--~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~  183 (376)
T PRK14131        106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHN--GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE  183 (376)
T ss_pred             ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeC--CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence            889999999999999986 466677787777 67  9999999975210   0                     000   


Q ss_pred             CCCccceEEEEECCCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcC
Q 014650          196 AGSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTD  274 (421)
Q Consensus       196 ~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~  274 (421)
                      .....+.+++||+.+++|+.++++|. +|..++ ++..+ ++|||+||......         ...+++.|         
T Consensus       184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a-~v~~~-~~iYv~GG~~~~~~---------~~~~~~~~---------  243 (376)
T PRK14131        184 DYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSA-VVIKG-NKLWLINGEIKPGL---------RTDAVKQG---------  243 (376)
T ss_pred             hcCcCceEEEEECCCCeeeECCcCCCCCCCcce-EEEEC-CEEEEEeeeECCCc---------CChhheEE---------
Confidence            00124789999999999999999997 555554 44444 89999999744321         01112222         


Q ss_pred             CCCCCCCCCceEecCcccccc------------ccccCeEEEEccccCCCc--------eEEE---e-cCCceEEEeCCC
Q 014650          275 DHDDGDRGTWREVGDMWDEWE------------RSRIGKIVVMEDENRGRP--------EVFM---L-DKFDILRYDMGL  330 (421)
Q Consensus       275 ~~yd~~~~~W~~~~~~~~~~~------------~~~~g~i~v~GG~~~g~~--------~~~~---~-~~~~v~~yd~~~  330 (421)
                       .||+++++|+.+++|+.+..            ....++||++||.. ...        ..+.   + ....+++||+++
T Consensus       244 -~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~  321 (376)
T PRK14131        244 -KFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN-FPGARENYQNGKLYAHEGLKKSWSDEIYALVN  321 (376)
T ss_pred             -EecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC-CCCChhhhhcCCcccccCCcceeehheEEecC
Confidence             13556669999999875311            11347999999972 110        0110   0 012478999999


Q ss_pred             CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeE
Q 014650          331 NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRY  398 (421)
Q Consensus       331 ~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  398 (421)
                      ++|+.+++||.+   |..++++.++++|||+||.....            ...++|++|+++.+.++.
T Consensus       322 ~~W~~~~~lp~~---r~~~~av~~~~~iyv~GG~~~~~------------~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        322 GKWQKVGELPQG---LAYGVSVSWNNGVLLIGGETAGG------------KAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             CcccccCcCCCC---ccceEEEEeCCEEEEEcCCCCCC------------cEeeeEEEEEEcCCEEEE
Confidence            999999999874   57778899999999999975322            345799999999888864

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=2e-33  Score=267.16  Aligned_cols=302  Identities=18%  Similarity=0.198  Sum_probs=197.2

Q ss_pred             hHHhhhcCCc-ccccc--cccccCCceEEEeCCCC-----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCC
Q 014650           50 SWFLFFSSRT-LVFDR--HKFNSQSDLLCIFPQDP-----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGP  121 (421)
Q Consensus        50 ~W~~l~~~~~-~~~~~--~~~~~~~~~~~~~g~~~-----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~  121 (421)
                      +|..+..... .+..|  .......+.||++||..     ..+++++||+.+++|..+++++..+ ...+.+|+++++++
T Consensus         8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p-~~~~~~~~~~~~~~   86 (341)
T PLN02153          8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP-RISCLGVRMVAVGT   86 (341)
T ss_pred             eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC-CCccCceEEEEECC
Confidence            4777755322 22222  22445567899988842     2368999999999999998775321 01234788999999


Q ss_pred             EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc-----CCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650          122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM-----ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA  196 (421)
Q Consensus       122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  196 (421)
                      +||||||....         ..++++++||+.+++|+.+++|     |.+|..|++++++  ++|||+||.+..... ..
T Consensus        87 ~iyv~GG~~~~---------~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~~-~~  154 (341)
T PLN02153         87 KLYIFGGRDEK---------REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--NHVYVFGGVSKGGLM-KT  154 (341)
T ss_pred             EEEEECCCCCC---------CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--CEEEEECCccCCCcc-CC
Confidence            99999997532         2467899999999999999887     7889999999999  999999998632100 01


Q ss_pred             CCccceEEEEECCCCceEECCCCC---CCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCc
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMP---RFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKT  273 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~  273 (421)
                      ...++++++||+++++|+.++++.   .+|..+.++++.  ++|||+||........+.  .....+++++||+.+    
T Consensus       155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~----  226 (341)
T PLN02153        155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ--GKIWVVYGFATSILPGGK--SDYESNAVQFFDPAS----  226 (341)
T ss_pred             CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC--CeEEEEeccccccccCCc--cceecCceEEEEcCC----
Confidence            124578999999999999998764   677777655554  899999997532110000  001123455555544    


Q ss_pred             CCCCCCCCCCceEecCcc-ccccccc------cCeEEEEccccCC--Cce-EEEecCCceEEEeCCCCceeEecccCCCC
Q 014650          274 DDHDDGDRGTWREVGDMW-DEWERSR------IGKIVVMEDENRG--RPE-VFMLDKFDILRYDMGLNRWLKETTIPEIR  343 (421)
Q Consensus       274 ~~~yd~~~~~W~~~~~~~-~~~~~~~------~g~i~v~GG~~~g--~~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~  343 (421)
                              ++|++++... .+.+|..      .++||++||....  ... ......+++++||+.+++|+.+.....+.
T Consensus       227 --------~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~  298 (341)
T PLN02153        227 --------GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPA  298 (341)
T ss_pred             --------CcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCC
Confidence                    5999997532 1113332      2699999997310  000 00011368999999999999986432211


Q ss_pred             C--CCCceEEE--EeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCC
Q 014650          344 P--CKKPLGFI--VLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPR  392 (421)
Q Consensus       344 ~--~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  392 (421)
                      .  .+..++++  ..+++|||+||.+++.            ....++++|+..
T Consensus       299 ~pr~~~~~~~~~v~~~~~~~~~gG~~~~~------------~~~~~~~~~~~~  339 (341)
T PLN02153        299 MPRGWTAYTTATVYGKNGLLMHGGKLPTN------------ERTDDLYFYAVN  339 (341)
T ss_pred             CCCccccccccccCCcceEEEEcCcCCCC------------ccccceEEEecc
Confidence            1  22323333  3345899999997543            223688988753

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=3.5e-33  Score=263.65  Aligned_cols=249  Identities=15%  Similarity=0.202  Sum_probs=184.9

Q ss_pred             ccCCceEEEeCCCCC-------------CCccEEEe-CCC-CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccC
Q 014650           68 NSQSDLLCIFPQDPS-------------ISSPFLFD-AAN-RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFD  132 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~-------------~~~~~~~d-~~~-~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~  132 (421)
                      +..++.+|++||...             .++++.|+ +.. .+|..+++||.+     |.++++++++++||++||.+..
T Consensus        10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~-----r~~~~~~~~~~~lyviGG~~~~   84 (323)
T TIGR03548        10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE-----AAYGASVSVENGIYYIGGSNSS   84 (323)
T ss_pred             eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc-----ccceEEEEECCEEEEEcCCCCC
Confidence            445677888888322             13567775 432 379999999976     7778888899999999997532


Q ss_pred             CCCCCCCCCCCCCeEEEEeCccCce----eeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEEC
Q 014650          133 ARSFPLDRPLPSDSAFRFNFLTFSW----ERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDV  208 (421)
Q Consensus       133 ~~~~~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~  208 (421)
                               ..++++++||+.+++|    +.+++||.+|..|++++++  ++|||+||..       .....+++++||+
T Consensus        85 ---------~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~--~~iYv~GG~~-------~~~~~~~v~~yd~  146 (323)
T TIGR03548        85 ---------ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD--GTLYVGGGNR-------NGKPSNKSYLFNL  146 (323)
T ss_pred             ---------CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC--CEEEEEeCcC-------CCccCceEEEEcC
Confidence                     2468999999999998    7889999999999999999  9999999974       2344789999999


Q ss_pred             CCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEe
Q 014650          209 AKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV  287 (421)
Q Consensus       209 ~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~  287 (421)
                      .+++|+.+++||. +|..+++++..  ++|||+||.++..           ..++++            ||+++++|+.+
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~--~~iYv~GG~~~~~-----------~~~~~~------------yd~~~~~W~~~  201 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQ--NELYVFGGGSNIA-----------YTDGYK------------YSPKKNQWQKV  201 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEEC--CEEEEEcCCCCcc-----------ccceEE------------EecCCCeeEEC
Confidence            9999999999885 67666554444  8999999976431           122344            45555599999


Q ss_pred             cCccc---ccccc-------ccCeEEEEccccCCCce---E-----------------EE-------ecCCceEEEeCCC
Q 014650          288 GDMWD---EWERS-------RIGKIVVMEDENRGRPE---V-----------------FM-------LDKFDILRYDMGL  330 (421)
Q Consensus       288 ~~~~~---~~~~~-------~~g~i~v~GG~~~g~~~---~-----------------~~-------~~~~~v~~yd~~~  330 (421)
                      ++|+.   +..+.       ..++||++||. ++...   +                 |.       ...+.+++||+.+
T Consensus       202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~  280 (323)
T TIGR03548       202 ADPTTDSEPISLLGAASIKINESLLLCIGGF-NKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT  280 (323)
T ss_pred             CCCCCCCCceeccceeEEEECCCEEEEECCc-CHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC
Confidence            87642   11111       13799999997 32100   0                 00       0125799999999


Q ss_pred             CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCC
Q 014650          331 NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGS  367 (421)
Q Consensus       331 ~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~  367 (421)
                      ++|+.++++|..  .|..++++.++++||++||....
T Consensus       281 ~~W~~~~~~p~~--~r~~~~~~~~~~~iyv~GG~~~p  315 (323)
T TIGR03548       281 GKWKSIGNSPFF--ARCGAALLLTGNNIFSINGELKP  315 (323)
T ss_pred             CeeeEccccccc--ccCchheEEECCEEEEEeccccC
Confidence            999999987742  57888999999999999997543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=287.01  Aligned_cols=246  Identities=13%  Similarity=0.159  Sum_probs=185.6

Q ss_pred             hhHhHHhhhcCCcccccccccccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCE
Q 014650           47 TCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPY  122 (421)
Q Consensus        47 v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~  122 (421)
                      ..++|..+...|. .+........++.+|++||..    ..+++++|||.+++|..+++|+.+     |..+++++++++
T Consensus       280 ~~~~W~~l~~mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-----R~~~~~~~~~g~  353 (557)
T PHA02713        280 NTMEYSVISTIPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-----RCRFSLAVIDDT  353 (557)
T ss_pred             CCCeEEECCCCCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-----hhceeEEEECCE
Confidence            3446776654443 111222445577888888832    356789999999999999999976     899999999999


Q ss_pred             EEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccC--------
Q 014650          123 IYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFG--------  194 (421)
Q Consensus       123 iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~--------  194 (421)
                      ||++||.+..         ..++++++|||.+++|+.+++||.+|..+++++++  ++|||+||.+....+.        
T Consensus       354 IYviGG~~~~---------~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~--g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        354 IYAIGGQNGT---------NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD--QYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             EEEECCcCCC---------CCCceEEEEECCCCeEEECCCCCcccccccEEEEC--CEEEEEeCCCcccccccccccccc
Confidence            9999997422         24678999999999999999999999999999999  9999999976321000        


Q ss_pred             ---CCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccC
Q 014650          195 ---AAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKK  271 (421)
Q Consensus       195 ---~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~  271 (421)
                         ......+++++|||++++|+.+++|+.+|..+.++++.  ++|||+||.++....         ...+         
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~--~~IYv~GG~~~~~~~---------~~~v---------  482 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK--DDIYVVCDIKDEKNV---------KTCI---------  482 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEEC--CEEEEEeCCCCCCcc---------ceeE---------
Confidence               01123678999999999999999999999877665555  899999998643211         0112         


Q ss_pred             CcCCCCCCCC-CCceEecCccccccc----cccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC
Q 014650          272 KTDDHDDGDR-GTWREVGDMWDEWER----SRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE  341 (421)
Q Consensus       272 ~~~~~yd~~~-~~W~~~~~~~~~~~~----~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  341 (421)
                         |.|||++ ++|+.+++|+.+...    ...|+||++||. ++.        ..+++||+.+++|+.+++...
T Consensus       483 ---e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~-~~~--------~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        483 ---FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCY-ESY--------MLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             ---EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeee-cce--------eehhhcCcccccccchhhhcC
Confidence               4466776 699999999874211    123799999997 341        368999999999999976543

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=6.8e-33  Score=273.07  Aligned_cols=289  Identities=19%  Similarity=0.252  Sum_probs=202.9

Q ss_pred             HhHHhhhcCCcccccc--cccccCCceEEEeCCCC-----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCC
Q 014650           49 RSWFLFFSSRTLVFDR--HKFNSQSDLLCIFPQDP-----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGP  121 (421)
Q Consensus        49 k~W~~l~~~~~~~~~~--~~~~~~~~~~~~~g~~~-----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~  121 (421)
                      .+|..+....+.+..|  +.....++.+|++||..     ..+++++||+.+++|..++++...| ...|.+|+++++++
T Consensus       151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P-~~~~~~~~~v~~~~  229 (470)
T PLN02193        151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP-HLSCLGVRMVSIGS  229 (470)
T ss_pred             ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCC-CCcccceEEEEECC
Confidence            4688776543332223  23445578899998832     2357999999999999886543211 12356888999999


Q ss_pred             EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc---CCCccceEEEEEccCCEEEEEcCCccccccCCCCC
Q 014650          122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM---ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  198 (421)
                      +|||+||.+..         ..++++|+||+.+++|++++++   |.+|..|++++++  ++|||+||.+       ...
T Consensus       230 ~lYvfGG~~~~---------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~--~~iYv~GG~~-------~~~  291 (470)
T PLN02193        230 TLYVFGGRDAS---------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE--ENVYVFGGVS-------ATA  291 (470)
T ss_pred             EEEEECCCCCC---------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC--CEEEEECCCC-------CCC
Confidence            99999997532         2478999999999999999888   7899999999999  9999999985       234


Q ss_pred             ccceEEEEECCCCceEECCC---CCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650          199 RISSVERYDVAKNEWVSMDE---MPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD  275 (421)
Q Consensus       199 ~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~  275 (421)
                      .++++++||+.+++|+.++.   ++.+|..+.++++.  ++||++||.++..           .+++++||+.++     
T Consensus       292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~--gkiyviGG~~g~~-----------~~dv~~yD~~t~-----  353 (470)
T PLN02193        292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ--GKVWVVYGFNGCE-----------VDDVHYYDPVQD-----  353 (470)
T ss_pred             CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC--CcEEEEECCCCCc-----------cCceEEEECCCC-----
Confidence            57889999999999999865   56778777666554  8999999976431           344666666665     


Q ss_pred             CCCCCCCCceEecCcc-ccccccc------cCeEEEEccccCCCceEE---EecCCceEEEeCCCCceeEecccCC---C
Q 014650          276 HDDGDRGTWREVGDMW-DEWERSR------IGKIVVMEDENRGRPEVF---MLDKFDILRYDMGLNRWLKETTIPE---I  342 (421)
Q Consensus       276 ~yd~~~~~W~~~~~~~-~~~~~~~------~g~i~v~GG~~~g~~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~---~  342 (421)
                             +|+.++.+. .+.+|..      .++||++||.........   ....+++++||+.+++|+.+..++.   +
T Consensus       354 -------~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~  426 (470)
T PLN02193        354 -------KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEET  426 (470)
T ss_pred             -------EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCC
Confidence                   999997652 1223332      268999999731010000   0012679999999999999986642   2


Q ss_pred             CCCCCceEE--EEeC--CeEEEEEeecCCCccccccccccccceeeEEEEEeCCc
Q 014650          343 RPCKKPLGF--IVLD--GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK  393 (421)
Q Consensus       343 ~~~r~~~~~--~~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~  393 (421)
                      +.+|..++.  +.+.  +.|+++||.++.+            ...++++.|++.+
T Consensus       427 P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~------------~~~~D~~~~~~~~  469 (470)
T PLN02193        427 PSSRGWTASTTGTIDGKKGLVMHGGKAPTN------------DRFDDLFFYGIDS  469 (470)
T ss_pred             CCCCccccceeeEEcCCceEEEEcCCCCcc------------ccccceEEEecCC
Confidence            235555432  2333  4599999997543            2236899987654

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=4.4e-33  Score=275.10  Aligned_cols=205  Identities=16%  Similarity=0.238  Sum_probs=171.6

Q ss_pred             CCceEEEeCCC---CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCe
Q 014650           70 QSDLLCIFPQD---PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDS  146 (421)
Q Consensus        70 ~~~~~~~~g~~---~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (421)
                      .++.+|++||.   ...+.+++|||.+++|..+++|+.+     |..+++++++++||++||.+.            .++
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----r~~~~~v~~~~~iYviGG~~~------------~~s  332 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----RLYASGVPANNKLYVVGGLPN------------PTS  332 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----hhcceEEEECCEEEEECCcCC------------CCc
Confidence            56778888873   2456789999999999999999976     888999999999999999631            256


Q ss_pred             EEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCe
Q 014650          147 AFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGC  226 (421)
Q Consensus       147 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~  226 (421)
                      +++|||.+++|..+++||.+|..|++++++  ++|||+||.+.         ..+++++|||.+++|+.+++|+.+|..+
T Consensus       333 ve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--g~IYviGG~~~---------~~~~ve~ydp~~~~W~~~~~m~~~r~~~  401 (480)
T PHA02790        333 VERWFHGDAAWVNMPSLLKPRCNPAVASIN--NVIYVIGGHSE---------TDTTTEYLLPNHDQWQFGPSTYYPHYKS  401 (480)
T ss_pred             eEEEECCCCeEEECCCCCCCCcccEEEEEC--CEEEEecCcCC---------CCccEEEEeCCCCEEEeCCCCCCccccc
Confidence            899999999999999999999999999999  99999999742         1367999999999999999999999887


Q ss_pred             eEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEc
Q 014650          227 VGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVME  306 (421)
Q Consensus       227 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~G  306 (421)
                      +++++.  ++||++||.                                                               
T Consensus       402 ~~~~~~--~~IYv~GG~---------------------------------------------------------------  416 (480)
T PHA02790        402 CALVFG--RRLFLVGRN---------------------------------------------------------------  416 (480)
T ss_pred             eEEEEC--CEEEEECCc---------------------------------------------------------------
Confidence            665554  788888762                                                               


Q ss_pred             cccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEE
Q 014650          307 DENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFI  386 (421)
Q Consensus       307 G~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v  386 (421)
                                      +++||+++++|+.+++|+.   +|..+++++++|+|||+||.++...             ...+
T Consensus       417 ----------------~e~ydp~~~~W~~~~~m~~---~r~~~~~~v~~~~IYviGG~~~~~~-------------~~~v  464 (480)
T PHA02790        417 ----------------AEFYCESSNTWTLIDDPIY---PRDNPELIIVDNKLLLIGGFYRGSY-------------IDTI  464 (480)
T ss_pred             ----------------eEEecCCCCcEeEcCCCCC---CccccEEEEECCEEEEECCcCCCcc-------------cceE
Confidence                            2357778888888888876   4688899999999999999864321             2579


Q ss_pred             EEEeCCcceeeEe
Q 014650          387 QIYHPRKKTWRYI  399 (421)
Q Consensus       387 ~~yd~~~~~W~~i  399 (421)
                      ++|||++++|+..
T Consensus       465 e~Yd~~~~~W~~~  477 (480)
T PHA02790        465 EVYNNRTYSWNIW  477 (480)
T ss_pred             EEEECCCCeEEec
Confidence            9999999999764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=9.7e-33  Score=260.62  Aligned_cols=266  Identities=17%  Similarity=0.194  Sum_probs=185.4

Q ss_pred             CCcceEEEEeCCEEEEEcccccCCCCC-CCCCCCCCCeEEEEe-Cc-cCceeeccccCCCccceEEEEEccCCEEEEEcC
Q 014650          110 SLCNFTSISLGPYIYLLGGSHFDARSF-PLDRPLPSDSAFRFN-FL-TFSWERIAPMISPRGSFACAAVRSLNQIIVAGG  186 (421)
Q Consensus       110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~~~v~~yd-~~-t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  186 (421)
                      ++.++.++++++.|||+||.+...... ..+.....+++++|+ +. +.+|..+++||.+|..+++++++  ++||++||
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~--~~lyviGG   80 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE--NGIYYIGG   80 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEEC--CEEEEEcC
Confidence            467888999999999999986542110 012234567888885 33 23799999999999989999998  99999999


Q ss_pred             CccccccCCCCCccceEEEEECCCCce----EECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechh
Q 014650          187 GSRHSLFGAAGSRISSVERYDVAKNEW----VSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDA  262 (421)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  262 (421)
                      .+       ....++++++||+.+++|    +.+++||.+|..++++++.  ++|||+||.....          ..+++
T Consensus        81 ~~-------~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~--~~iYv~GG~~~~~----------~~~~v  141 (323)
T TIGR03548        81 SN-------SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD--GTLYVGGGNRNGK----------PSNKS  141 (323)
T ss_pred             CC-------CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC--CEEEEEeCcCCCc----------cCceE
Confidence            75       234578999999999998    7889999999887776665  8999999975332          22345


Q ss_pred             eehhhhccCCcCCCCCCCCCCceEecCcccccccc------ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEe
Q 014650          263 VVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS------RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKE  336 (421)
Q Consensus       263 ~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~------~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~  336 (421)
                      ++||+.+            ++|+++++|+.. .|.      ..++||++||. ++..      ..++++||+++++|+.+
T Consensus       142 ~~yd~~~------------~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~-~~~~------~~~~~~yd~~~~~W~~~  201 (323)
T TIGR03548       142 YLFNLET------------QEWFELPDFPGE-PRVQPVCVKLQNELYVFGGG-SNIA------YTDGYKYSPKKNQWQKV  201 (323)
T ss_pred             EEEcCCC------------CCeeECCCCCCC-CCCcceEEEECCEEEEEcCC-CCcc------ccceEEEecCCCeeEEC
Confidence            5555555            499999988642 122      23799999997 3321      14679999999999999


Q ss_pred             cccCCCCCC--CC-ceEEEEeCCeEEEEEeecCCCccccccc-------------------cccccceeeEEEEEeCCcc
Q 014650          337 TTIPEIRPC--KK-PLGFIVLDGELYVMTVLKGSDLNETRRS-------------------QQHKRAGCLFIQIYHPRKK  394 (421)
Q Consensus       337 ~~~~~~~~~--r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~-------------------~~~~~~~~~~v~~yd~~~~  394 (421)
                      ++|+....+  +. ..+++..+++|||+||.++........-                   -.+.....+++++||++++
T Consensus       202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~  281 (323)
T TIGR03548       202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG  281 (323)
T ss_pred             CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence            887532112  22 3344556799999999875321000000                   0011123468999999999


Q ss_pred             eeeEecccCCCCCCCCccceeEEE
Q 014650          395 TWRYIFTKPPFPQPLDFGTAIMCT  418 (421)
Q Consensus       395 ~W~~i~~~p~~~~~~~~~~~~~~~  418 (421)
                      +|+.++.+|  ...+..++++++.
T Consensus       282 ~W~~~~~~p--~~~r~~~~~~~~~  303 (323)
T TIGR03548       282 KWKSIGNSP--FFARCGAALLLTG  303 (323)
T ss_pred             eeeEccccc--ccccCchheEEEC
Confidence            999988655  3356666665543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=2.6e-32  Score=260.40  Aligned_cols=281  Identities=22%  Similarity=0.316  Sum_probs=183.7

Q ss_pred             CCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeC--ccCceeeccccC-CCccceEEEEE
Q 014650           99 LPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNF--LTFSWERIAPMI-SPRGSFACAAV  175 (421)
Q Consensus        99 l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~  175 (421)
                      +|+||.+     |..+++++++++|||+||..             .+.+++||+  .+++|..+++|| .+|..++++++
T Consensus         1 ~~~lp~~-----~~~~~~~~~~~~vyv~GG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~   62 (346)
T TIGR03547         1 LPDLPVG-----FKNGTGAIIGDKVYVGLGSA-------------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI   62 (346)
T ss_pred             CCCCCcc-----ccCceEEEECCEEEEEcccc-------------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE
Confidence            4677765     77778888999999999962             357899995  678999999999 58999999999


Q ss_pred             ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-CCCCCCCCeeEEEEccCCeEEEEeccCCCcccccccc
Q 014650          176 RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLP  254 (421)
Q Consensus       176 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  254 (421)
                      +  ++|||+||...... ......++++|+||+.+++|+.++ ++|.+|..++++++.+ ++||++||.+.... .    
T Consensus        63 ~--~~iYv~GG~~~~~~-~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~-g~IYviGG~~~~~~-~----  133 (346)
T TIGR03547        63 D--GKLYVFGGIGKANS-EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN-GQAYFTGGVNKNIF-D----  133 (346)
T ss_pred             C--CEEEEEeCCCCCCC-CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC-CEEEEEcCcChHHH-H----
Confidence            9  99999999752100 001124688999999999999987 4566666665553444 89999999864210 0    


Q ss_pred             ceeeechheehhhhc-------------------cCCcCCCCCCCCCCceEecCcccc-cccc----ccCeEEEEccccC
Q 014650          255 VDEYYRDAVVMQLKK-------------------KKKTDDHDDGDRGTWREVGDMWDE-WERS----RIGKIVVMEDENR  310 (421)
Q Consensus       255 ~~~~~~~~~~yd~~~-------------------~~~~~~~yd~~~~~W~~~~~~~~~-~~~~----~~g~i~v~GG~~~  310 (421)
                        ..+.++..||...                   .....|+|||.+++|+.+++|+.. ....    ..++||++||.. 
T Consensus       134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~-  210 (346)
T TIGR03547       134 --GYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI-  210 (346)
T ss_pred             --HHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee-
Confidence              0000011111100                   001236677888899999998742 1111    237999999972 


Q ss_pred             CCceEEEecCCceEEEe--CCCCceeEecccCCCCC----CCCceEEEEeCCeEEEEEeecCCCccc-----cccccccc
Q 014650          311 GRPEVFMLDKFDILRYD--MGLNRWLKETTIPEIRP----CKKPLGFIVLDGELYVMTVLKGSDLNE-----TRRSQQHK  379 (421)
Q Consensus       311 g~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~----~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~~~~~  379 (421)
                      ...    ....+++.||  +++++|+++++|+.++.    .+.++.+++++++|||+||.+......     .... ...
T Consensus       211 ~~~----~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~~  285 (346)
T TIGR03547       211 KPG----LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYA-HEG  285 (346)
T ss_pred             CCC----ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccc-cCC
Confidence            211    1224565554  57789999999987531    123455788999999999976321000     0000 000


Q ss_pred             cceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          380 RAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       380 ~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                      ......+++||+++++|+.++.+|   .++..++++++
T Consensus       286 ~~~~~~~e~yd~~~~~W~~~~~lp---~~~~~~~~~~~  320 (346)
T TIGR03547       286 LIKAWSSEVYALDNGKWSKVGKLP---QGLAYGVSVSW  320 (346)
T ss_pred             CCceeEeeEEEecCCcccccCCCC---CCceeeEEEEc
Confidence            011246899999999999987655   44556665544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.98  E-value=2.5e-31  Score=226.75  Aligned_cols=265  Identities=17%  Similarity=0.299  Sum_probs=208.5

Q ss_pred             CCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc-------------cCCCccceEEEEEc
Q 014650          110 SLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP-------------MISPRGSFACAAVR  176 (421)
Q Consensus       110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~  176 (421)
                      .|.+|+++.++.+||-|||.......    ....--+|.++|..+-+|.++++             .|..|++|+++.++
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy----~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~   88 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDY----DAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ   88 (392)
T ss_pred             ccccceeeeecceEEecCCccccccc----ccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence            38899999999999999998643211    01123479999999999999876             24459999999999


Q ss_pred             cCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccc
Q 014650          177 SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVL  253 (421)
Q Consensus       177 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  253 (421)
                        +++|+-||.+      +.....+.++.||++++.|.+.   +-+|.+|.+|++++..  +.+|||||+.....     
T Consensus        89 --d~~yvWGGRN------D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g--n~MyiFGGye~~a~-----  153 (392)
T KOG4693|consen   89 --DKAYVWGGRN------DDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG--NQMYIFGGYEEDAQ-----  153 (392)
T ss_pred             --ceEEEEcCcc------CcccccceeeeeccccccccccceeeecCCccCCceeeEEC--cEEEEecChHHHHH-----
Confidence              9999999987      3456688999999999999874   4578999999988887  79999999976553     


Q ss_pred             cceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc-ccc------ccCeEEEEccccCCCceEEEe----cCCc
Q 014650          254 PVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW-ERS------RIGKIVVMEDENRGRPEVFML----DKFD  322 (421)
Q Consensus       254 ~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~------~~g~i~v~GG~~~g~~~~~~~----~~~~  322 (421)
                         ++..+++++|..+.            +|+.+.....+. .|.      ..+.+|++||..+... .+..    ..+.
T Consensus       154 ---~FS~d~h~ld~~Tm------------tWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g-pfHs~~e~Yc~~  217 (392)
T KOG4693|consen  154 ---RFSQDTHVLDFATM------------TWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG-PFHSIHEQYCDT  217 (392)
T ss_pred             ---hhhccceeEeccce------------eeeehhccCCCchhhhhhhhhhccceEEEeccccccCC-Cccchhhhhcce
Confidence               66777888888888            999997655431 222      2379999999852222 1111    1257


Q ss_pred             eEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEeccc
Q 014650          323 ILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTK  402 (421)
Q Consensus       323 v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~  402 (421)
                      |..+|..++.|..-.+-+..+..|..|++.+.|+++|+|||+++...           .--+++++|||.+..|+.|...
T Consensus       218 i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln-----------~HfndLy~FdP~t~~W~~I~~~  286 (392)
T KOG4693|consen  218 IMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN-----------VHFNDLYCFDPKTSMWSVISVR  286 (392)
T ss_pred             eEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh-----------hhhcceeecccccchheeeecc
Confidence            88999999999998655554457889999999999999999987542           1226899999999999999988


Q ss_pred             CCCCCCCCccceeEEEee
Q 014650          403 PPFPQPLDFGTAIMCTVR  420 (421)
Q Consensus       403 p~~~~~~~~~~~~~~~~~  420 (421)
                      ..-|.+|...|++|..-|
T Consensus       287 Gk~P~aRRRqC~~v~g~k  304 (392)
T KOG4693|consen  287 GKYPSARRRQCSVVSGGK  304 (392)
T ss_pred             CCCCCcccceeEEEECCE
Confidence            888888999998887654

>PHA03098 kelch-like protein; Provisional

Probab=99.98  E-value=5.5e-31  Score=265.62  Aligned_cols=226  Identities=20%  Similarity=0.280  Sum_probs=177.8

Q ss_pred             cccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCC
Q 014650           67 FNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL  142 (421)
Q Consensus        67 ~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  142 (421)
                      ....++.+|++||..    ..++++.||+.+++|..+++|+.+     |.+|++++.+++||++||.+..         .
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-----R~~~~~~~~~~~lyv~GG~~~~---------~  355 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-----RKNPGVTVFNNRIYVIGGIYNS---------I  355 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-----cccceEEEECCEEEEEeCCCCC---------E
Confidence            344567888888732    345799999999999999999965     8899999999999999997522         2


Q ss_pred             CCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       143 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ..+++++||+.+++|+.+++||.+|..|++++++  ++||++||...      ....++++++||+.+++|+.++++|.+
T Consensus       356 ~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~--~~iYv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~~~p~~  427 (534)
T PHA03098        356 SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN--NLIYVIGGISK------NDELLKTVECFSLNTNKWSKGSPLPIS  427 (534)
T ss_pred             ecceEEEEcCCCCceeeCCCcCcCCccceEEEEC--CEEEEECCcCC------CCcccceEEEEeCCCCeeeecCCCCcc
Confidence            4688999999999999999999999999999999  99999999742      234478999999999999999999999


Q ss_pred             CCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc----c
Q 014650          223 RAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS----R  298 (421)
Q Consensus       223 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~----~  298 (421)
                      |..+++++..  ++||++||.+.....       ..++.+++            ||+++++|+.++.++.+....    .
T Consensus       428 r~~~~~~~~~--~~iyv~GG~~~~~~~-------~~~~~v~~------------yd~~~~~W~~~~~~~~~r~~~~~~~~  486 (534)
T PHA03098        428 HYGGCAIYHD--GKIYVIGGISYIDNI-------KVYNIVES------------YNPVTNKWTELSSLNFPRINASLCIF  486 (534)
T ss_pred             ccCceEEEEC--CEEEEECCccCCCCC-------cccceEEE------------ecCCCCceeeCCCCCcccccceEEEE
Confidence            9887666554  899999997653210       11222444            455555999999887642111    2


Q ss_pred             cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC
Q 014650          299 IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE  341 (421)
Q Consensus       299 ~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  341 (421)
                      .+++|++||. .+..     ..+.+++||+.+++|+.++.+|.
T Consensus       487 ~~~iyv~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        487 NNKIYVVGGD-KYEY-----YINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             CCEEEEEcCC-cCCc-----ccceeEEEeCCCCEEEecCCCcc
Confidence            3789999997 3221     13689999999999999987765

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=1.8e-30  Score=249.62  Aligned_cols=281  Identities=19%  Similarity=0.259  Sum_probs=183.5

Q ss_pred             cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCc--cCceeeccccC-CCccceE
Q 014650           95 ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFL--TFSWERIAPMI-SPRGSFA  171 (421)
Q Consensus        95 ~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~  171 (421)
                      .+..+++||.+     +..+++++++++|||+||..             .+.+++||+.  +++|..+++|| .+|..++
T Consensus        18 ~~~~l~~lP~~-----~~~~~~~~~~~~iyv~gG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~   79 (376)
T PRK14131         18 NAEQLPDLPVP-----FKNGTGAIDNNTVYVGLGSA-------------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAV   79 (376)
T ss_pred             ecccCCCCCcC-----ccCCeEEEECCEEEEEeCCC-------------CCeEEEEECCCCCCCeEECCcCCCCCcccce
Confidence            46778899976     66678888999999999962             2458899986  57899999998 4899999


Q ss_pred             EEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC-CCCCCCCeeEEEEccCCeEEEEeccCCCcc--
Q 014650          172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE-MPRFRAGCVGFVAEESGEFWVMGGYGDSRT--  248 (421)
Q Consensus       172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~--  248 (421)
                      +++++  ++|||+||..... .......++++++||+.+++|+.+++ +|.++.+|+++++.+ ++||++||.+....  
T Consensus        80 ~v~~~--~~IYV~GG~~~~~-~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~-~~IYv~GG~~~~~~~~  155 (376)
T PRK14131         80 AAFID--GKLYVFGGIGKTN-SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHN-GKAYITGGVNKNIFDG  155 (376)
T ss_pred             EEEEC--CEEEEEcCCCCCC-CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeC-CEEEEECCCCHHHHHH
Confidence            99999  9999999975210 00012346889999999999999986 466666666665455 89999999864210  


Q ss_pred             -cccccc-------ce--------------eeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc------ccC
Q 014650          249 -ISGVLP-------VD--------------EYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS------RIG  300 (421)
Q Consensus       249 -~~~~~~-------~~--------------~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~------~~g  300 (421)
                       +.....       ..              .+.+++            ++||+.+++|+.+++++.. .+.      ..+
T Consensus       156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v------------~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~  222 (376)
T PRK14131        156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV------------LSYDPSTNQWKNAGESPFL-GTAGSAVVIKGN  222 (376)
T ss_pred             HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE------------EEEECCCCeeeECCcCCCC-CCCcceEEEECC
Confidence             000000       00              001223            4566666799999988752 121      237


Q ss_pred             eEEEEccccCCCceEEEecCCce--EEEeCCCCceeEecccCCCCC---C--CCceEEEEeCCeEEEEEeecCCCcccc-
Q 014650          301 KIVVMEDENRGRPEVFMLDKFDI--LRYDMGLNRWLKETTIPEIRP---C--KKPLGFIVLDGELYVMTVLKGSDLNET-  372 (421)
Q Consensus       301 ~i~v~GG~~~g~~~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~~~---~--r~~~~~~~~~~~lyv~GG~~~~~~~~~-  372 (421)
                      +||++||.. ...    .+..++  ..||+++++|+.+.+||.++.   +  +..+.+++++++|||+||.+....... 
T Consensus       223 ~iYv~GG~~-~~~----~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~  297 (376)
T PRK14131        223 KLWLINGEI-KPG----LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY  297 (376)
T ss_pred             EEEEEeeeE-CCC----cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence            899999962 111    122344  456889999999999987531   1  122335678999999999763220000 


Q ss_pred             cccc---ccccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEEE
Q 014650          373 RRSQ---QHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCT  418 (421)
Q Consensus       373 ~~~~---~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~  418 (421)
                      ..++   .........+++||+++++|+.++.+   +.++..++++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~r~~~~av~~~  343 (376)
T PRK14131        298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---PQGLAYGVSVSWN  343 (376)
T ss_pred             hcCCcccccCCcceeehheEEecCCcccccCcC---CCCccceEEEEeC
Confidence            0000   00001123578999999999987654   4556677666543

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=214.74  Aligned_cols=264  Identities=18%  Similarity=0.276  Sum_probs=194.0

Q ss_pred             cccCCceEEEeCCC--------CCCCccEEEeCCCCcEEECCC--------CCCCCCCCCCcceEEEEeCCEEEEEcccc
Q 014650           67 FNSQSDLLCIFPQD--------PSISSPFLFDAANRACRPLPP--------LPCNPSTYSLCNFTSISLGPYIYLLGGSH  130 (421)
Q Consensus        67 ~~~~~~~~~~~g~~--------~~~~~~~~~d~~~~~W~~l~~--------l~~~~~~~~r~~~~~~~~~~~iyv~GG~~  130 (421)
                      .......+|.|||-        ...-++.+++..+-+|+.+++        .+-|--.+.|.+|+++.+++++||.||.+
T Consensus        19 avaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRN   98 (392)
T KOG4693|consen   19 AVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRN   98 (392)
T ss_pred             eeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCcc
Confidence            34457889999981        234468899999999999977        22222236699999999999999999987


Q ss_pred             cCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEE
Q 014650          131 FDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYD  207 (421)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd  207 (421)
                      .+.        ...+.++.|||.|++|.+.   .-+|.+|-+|++|+++  +.+|++||+.+.     .....+++.++|
T Consensus        99 D~e--------gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g--n~MyiFGGye~~-----a~~FS~d~h~ld  163 (392)
T KOG4693|consen   99 DDE--------GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG--NQMYIFGGYEED-----AQRFSQDTHVLD  163 (392)
T ss_pred             Ccc--------cccceeeeeccccccccccceeeecCCccCCceeeEEC--cEEEEecChHHH-----HHhhhccceeEe
Confidence            544        3678899999999999875   3468899999999999  999999998643     557788999999


Q ss_pred             CCCCceEECC---CCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccc--eeeechheehhhhccCCcCCCCCCCCC
Q 014650          208 VAKNEWVSMD---EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPV--DEYYRDAVVMQLKKKKKTDDHDDGDRG  282 (421)
Q Consensus       208 ~~t~~W~~~~---~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~~~~~~~yd~~~~~~~~~~yd~~~~  282 (421)
                      ..|.+|+.+.   ..|.=|..|++.++.  +.+|||||......   .+++  +.+.+.+..+|..++            
T Consensus       164 ~~TmtWr~~~Tkg~PprwRDFH~a~~~~--~~MYiFGGR~D~~g---pfHs~~e~Yc~~i~~ld~~T~------------  226 (392)
T KOG4693|consen  164 FATMTWREMHTKGDPPRWRDFHTASVID--GMMYIFGGRSDESG---PFHSIHEQYCDTIMALDLATG------------  226 (392)
T ss_pred             ccceeeeehhccCCCchhhhhhhhhhcc--ceEEEeccccccCC---CccchhhhhcceeEEEecccc------------
Confidence            9999999874   334445557666665  89999999865431   0111  123333455555555            


Q ss_pred             CceEecCcc--cccccc-----ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeC
Q 014650          283 TWREVGDMW--DEWERS-----RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD  355 (421)
Q Consensus       283 ~W~~~~~~~--~~~~~~-----~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~  355 (421)
                      .|+..+.-+  ..+.|+     .+|++|++||. .|.-.   ...++++.|||.+..|..+..-...+.+|.-.++++.+
T Consensus       227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY-ng~ln---~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g  302 (392)
T KOG4693|consen  227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY-NGTLN---VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSG  302 (392)
T ss_pred             ccccCCCCCcCCCcccccceEEEcceEEEeccc-chhhh---hhhcceeecccccchheeeeccCCCCCcccceeEEEEC
Confidence            999985432  222332     23899999998 34311   12378999999999999996544333356778889999


Q ss_pred             CeEEEEEeecC
Q 014650          356 GELYVMTVLKG  366 (421)
Q Consensus       356 ~~lyv~GG~~~  366 (421)
                      +++|+|||..-
T Consensus       303 ~kv~LFGGTsP  313 (392)
T KOG4693|consen  303 GKVYLFGGTSP  313 (392)
T ss_pred             CEEEEecCCCC
Confidence            99999999753

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=236.17  Aligned_cols=180  Identities=22%  Similarity=0.323  Sum_probs=149.2

Q ss_pred             EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCC
Q 014650          116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGA  195 (421)
Q Consensus       116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~  195 (421)
                      ++..++.||++||.+..         ...+.+++|||.+++|..+++|+.+|..+++++++  ++||++||.+       
T Consensus       267 ~~~~~~~lyviGG~~~~---------~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~--~~iYviGG~~-------  328 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN---------EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN--NKLYVVGGLP-------  328 (480)
T ss_pred             eEEECCEEEEEcCCCCC---------CcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC--CEEEEECCcC-------
Confidence            44589999999997432         24678999999999999999999999999999999  9999999964       


Q ss_pred             CCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650          196 AGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD  275 (421)
Q Consensus       196 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~  275 (421)
                      .   .+++++||+.+++|+.+++||.+|..++++++.  ++||++||.++.                             
T Consensus       329 ~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--g~IYviGG~~~~-----------------------------  374 (480)
T PHA02790        329 N---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN--NVIYVIGGHSET-----------------------------  374 (480)
T ss_pred             C---CCceEEEECCCCeEEECCCCCCCCcccEEEEEC--CEEEEecCcCCC-----------------------------
Confidence            1   256999999999999999999999887766665  899999995210                             


Q ss_pred             CCCCCCCCceEecCccccccccccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeC
Q 014650          276 HDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD  355 (421)
Q Consensus       276 ~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~  355 (421)
                                                                  ...+++|||.+++|+.+++|+.   +|..+++++++
T Consensus       375 --------------------------------------------~~~ve~ydp~~~~W~~~~~m~~---~r~~~~~~~~~  407 (480)
T PHA02790        375 --------------------------------------------DTTTEYLLPNHDQWQFGPSTYY---PHYKSCALVFG  407 (480)
T ss_pred             --------------------------------------------CccEEEEeCCCCEEEeCCCCCC---ccccceEEEEC
Confidence                                                        0346789999999999999887   45778889999


Q ss_pred             CeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEEE
Q 014650          356 GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCT  418 (421)
Q Consensus       356 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~  418 (421)
                      |+|||+||                     .+++|||++++|+.++++   +.++..++++++.
T Consensus       408 ~~IYv~GG---------------------~~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~  446 (480)
T PHA02790        408 RRLFLVGR---------------------NAEFYCESSNTWTLIDDP---IYPRDNPELIIVD  446 (480)
T ss_pred             CEEEEECC---------------------ceEEecCCCCcEeEcCCC---CCCccccEEEEEC
Confidence            99999998                     257899999999998754   4556777766654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.93  E-value=3.1e-25  Score=200.31  Aligned_cols=260  Identities=16%  Similarity=0.203  Sum_probs=191.5

Q ss_pred             CCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec--cccCCCccceEEEEEccCCEEEEE
Q 014650          109 YSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI--APMISPRGSFACAAVRSLNQIIVA  184 (421)
Q Consensus       109 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~~iyv~  184 (421)
                      .+|.++++.+-  .+.|++|||.-.++.     .....+++|.||..+++|+.+  +..|.||+.|.++++-+ +.+|++
T Consensus        65 spRsn~sl~~nPekeELilfGGEf~ngq-----kT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s-~~l~~f  138 (521)
T KOG1230|consen   65 SPRSNPSLFANPEKEELILFGGEFYNGQ-----KTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS-NILWLF  138 (521)
T ss_pred             CCCCCcceeeccCcceeEEecceeecce-----eEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEecc-CeEEEe
Confidence            44888887765  568999999876653     235678999999999999987  44578899999999987 899999


Q ss_pred             cCCccccccCCCCCccceEEEEECCCCceEEC--CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechh
Q 014650          185 GGGSRHSLFGAAGSRISSVERYDVAKNEWVSM--DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDA  262 (421)
Q Consensus       185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  262 (421)
                      ||.-.... ....-..+++|+||..+++|+++  +.-|.||.+|..++..  .+|.+|||+....  ..+    .||+++
T Consensus       139 GGEfaSPn-q~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~n--r~y----~YyNDv  209 (521)
T KOG1230|consen  139 GGEFASPN-QEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSN--RDY----IYYNDV  209 (521)
T ss_pred             ccccCCcc-hhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCC--Cce----EEeeee
Confidence            99742210 00112267899999999999997  4568999999999888  7999999985542  222    799999


Q ss_pred             eehhhhccCCcCCCCCCCCCCceEecCcc-cccccccc-------CeEEEEccccCCC---ceEEEecCCceEEEeCCC-
Q 014650          263 VVMQLKKKKKTDDHDDGDRGTWREVGDMW-DEWERSRI-------GKIVVMEDENRGR---PEVFMLDKFDILRYDMGL-  330 (421)
Q Consensus       263 ~~yd~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~-------g~i~v~GG~~~g~---~~~~~~~~~~v~~yd~~~-  330 (421)
                      ++||+.+-            +|+++.+.. .|.+|+.+       |.|++.||+....   ..-.-...++++..++.. 
T Consensus       210 y~FdLdty------------kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~  277 (521)
T KOG1230|consen  210 YAFDLDTY------------KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG  277 (521)
T ss_pred             EEEeccce------------eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence            99999987            999997622 13455543       7899999984000   000001236788998888 


Q ss_pred             ----CceeEecccCCCCCCCCceEEEEeC-CeEEEEEeecCCC-ccccccccccccceeeEEEEEeCCcceeeEec
Q 014650          331 ----NRWLKETTIPEIRPCKKPLGFIVLD-GELYVMTVLKGSD-LNETRRSQQHKRAGCLFIQIYHPRKKTWRYIF  400 (421)
Q Consensus       331 ----~~W~~~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  400 (421)
                          -+|+.+.+...++.+|.++++++.. ++-|.|||..... --+     .--+.+.++++.||...++|...+
T Consensus       278 ~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE-----sl~g~F~NDLy~fdlt~nrW~~~q  348 (521)
T KOG1230|consen  278 REDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE-----SLSGEFFNDLYFFDLTRNRWSEGQ  348 (521)
T ss_pred             CCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch-----hhhhhhhhhhhheecccchhhHhh
Confidence                6899998877766789999988775 5999999975421 000     012455679999999999998763

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.93  E-value=9.1e-24  Score=207.78  Aligned_cols=253  Identities=17%  Similarity=0.248  Sum_probs=198.5

Q ss_pred             CCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC--eEEEEeCccCceeecc---ccCCCccceEEEEEccCCEEEE
Q 014650          109 YSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD--SAFRFNFLTFSWERIA---PMISPRGSFACAAVRSLNQIIV  183 (421)
Q Consensus       109 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~--~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~~~iyv  183 (421)
                      .+|..|+++.+++++|||||......         ..  ++|++|..+..|....   ..|.+|++|.+++++  ++||+
T Consensus        59 ~~R~~hs~~~~~~~~~vfGG~~~~~~---------~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~l  127 (482)
T KOG0379|consen   59 IPRAGHSAVLIGNKLYVFGGYGSGDR---------LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYL  127 (482)
T ss_pred             chhhccceeEECCEEEEECCCCCCCc---------cccceeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEE
Confidence            34999999999999999999864432         22  6999999999998764   457889999999999  99999


Q ss_pred             EcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeec
Q 014650          184 AGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYR  260 (421)
Q Consensus       184 ~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  260 (421)
                      +||.+.      .....++++.||+.|++|..+   ...|.+|.+|+++++.  ++||||||.+...         ...+
T Consensus       128 fGG~~~------~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~~l~vfGG~~~~~---------~~~n  190 (482)
T KOG0379|consen  128 FGGTDK------KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--TKLVVFGGIGGTG---------DSLN  190 (482)
T ss_pred             EccccC------CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--CEEEEECCccCcc---------ccee
Confidence            999862      245588999999999999986   3468899999887776  8999999998765         3567


Q ss_pred             hheehhhhccCCcCCCCCCCCCCceEecCccc-ccccccc------CeEEEEccccCCCceEEEecCCceEEEeCCCCce
Q 014650          261 DAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EWERSRI------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRW  333 (421)
Q Consensus       261 ~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W  333 (421)
                      ++++||+++.            +|.++..... +.+|..+      ++++++||...+..     ..++++.+|..+.+|
T Consensus       191 dl~i~d~~~~------------~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~-----~l~D~~~ldl~~~~W  253 (482)
T KOG0379|consen  191 DLHIYDLETS------------TWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV-----YLNDVHILDLSTWEW  253 (482)
T ss_pred             eeeeeccccc------------cceecccCCCCCCCCCCceEEEECCeEEEEeccccCCc-----eecceEeeeccccee
Confidence            7888888777            9999965432 2244443      57888888721221     238999999999999


Q ss_pred             eEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC-CCCCCCCcc
Q 014650          334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP-PFPQPLDFG  412 (421)
Q Consensus       334 ~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p-~~~~~~~~~  412 (421)
                      ..+......+.+|..|..+..++.++++||......           ....+++.||.+++.|.++...+ ..+.++..+
T Consensus       254 ~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~-----------~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  322 (482)
T KOG0379|consen  254 KLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ-----------EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGH  322 (482)
T ss_pred             eeccccCCCCCCcceeeeEEECCEEEEEcCCccccc-----------ccccccccccccccceeeeeccccccccccccc
Confidence            988766665568899999999999999999765310           13368999999999999998777 566666666


Q ss_pred             ceeEE
Q 014650          413 TAIMC  417 (421)
Q Consensus       413 ~~~~~  417 (421)
                      +++..
T Consensus       323 ~~~~~  327 (482)
T KOG0379|consen  323 AAELI  327 (482)
T ss_pred             cceee
Confidence            65544

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.90  E-value=4.1e-22  Score=196.15  Aligned_cols=244  Identities=18%  Similarity=0.298  Sum_probs=184.6

Q ss_pred             cCCceEEEeCCCC---CCC--ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCC
Q 014650           69 SQSDLLCIFPQDP---SIS--SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLP  143 (421)
Q Consensus        69 ~~~~~~~~~g~~~---~~~--~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  143 (421)
                      ...+.+++|||..   ...  +++.||..+..|.....-...+  .+|.+|++++++++||+|||.+...        ..
T Consensus        68 ~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p--~~r~g~~~~~~~~~l~lfGG~~~~~--------~~  137 (482)
T KOG0379|consen   68 LIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP--SPRYGHSLSAVGDKLYLFGGTDKKY--------RN  137 (482)
T ss_pred             EECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC--CcccceeEEEECCeEEEEccccCCC--------CC
Confidence            3477788888732   222  5999999999998764433222  5699999999999999999987522        24


Q ss_pred             CCeEEEEeCccCceeeccc---cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---C
Q 014650          144 SDSAFRFNFLTFSWERIAP---MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---D  217 (421)
Q Consensus       144 ~~~v~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~  217 (421)
                      .++++.||+.|++|..+.+   +|.+|.+|++++++  .++||+||...      .....+++++||+++.+|.++   +
T Consensus       138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~~l~vfGG~~~------~~~~~ndl~i~d~~~~~W~~~~~~g  209 (482)
T KOG0379|consen  138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--TKLVVFGGIGG------TGDSLNDLHIYDLETSTWSELDTQG  209 (482)
T ss_pred             hhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--CEEEEECCccC------cccceeeeeeeccccccceecccCC
Confidence            7899999999999998754   57889999999999  99999999863      233799999999999999986   5


Q ss_pred             CCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccc-cccc
Q 014650          218 EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EWER  296 (421)
Q Consensus       218 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~  296 (421)
                      +.|.||++|+++++.  ++++++||.+...         .++++++.+|+.+.            +|..+..... +.+|
T Consensus       210 ~~P~pR~gH~~~~~~--~~~~v~gG~~~~~---------~~l~D~~~ldl~~~------------~W~~~~~~g~~p~~R  266 (482)
T KOG0379|consen  210 EAPSPRYGHAMVVVG--NKLLVFGGGDDGD---------VYLNDVHILDLSTW------------EWKLLPTGGDLPSPR  266 (482)
T ss_pred             CCCCCCCCceEEEEC--CeEEEEeccccCC---------ceecceEeeecccc------------eeeeccccCCCCCCc
Confidence            678899999888887  7899999987332         67888999999888            9997754332 2244


Q ss_pred             ccc------CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccC-CCCCCCCceEEEEeCCe
Q 014650          297 SRI------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIP-EIRPCKKPLGFIVLDGE  357 (421)
Q Consensus       297 ~~~------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~r~~~~~~~~~~~  357 (421)
                      ..+      .+++++||...+..    ....+++.||.+++.|..+.... ....+|..++.+.....
T Consensus       267 ~~h~~~~~~~~~~l~gG~~~~~~----~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  330 (482)
T KOG0379|consen  267 SGHSLTVSGDHLLLFGGGTDPKQ----EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDEL  330 (482)
T ss_pred             ceeeeEEECCEEEEEcCCccccc----ccccccccccccccceeeeeccccccccccccccceeeccC
Confidence            443      47888888621111    12378899999999999997766 33335666665555433

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=8.8e-23  Score=184.51  Aligned_cols=290  Identities=16%  Similarity=0.222  Sum_probs=195.4

Q ss_pred             cCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccccccc--cccCCceEEEeCCC-------CCCCccEEEe
Q 014650           20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHK--FNSQSDLLCIFPQD-------PSISSPFLFD   90 (421)
Q Consensus        20 ~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~~~~~--~~~~~~~~~~~g~~-------~~~~~~~~~d   90 (421)
                      +.+.|.++.+.+||..+..+......       .....+.-++.+..  ......-+++|||.       -..++++.||
T Consensus        32 l~~e~de~~i~~~iq~~eaK~~e~~~-------e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn  104 (521)
T KOG1230|consen   32 LNEELDEADIAEIIQSLEAKQIEHVV-------ETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYN  104 (521)
T ss_pred             cCcccchHHHHHHHHhhhhhccceee-------eccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEe
Confidence            44456677777788777766542111       11123333334443  23445578888872       1457899999


Q ss_pred             CCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc--cCCCc
Q 014650           91 AANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP--MISPR  167 (421)
Q Consensus        91 ~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~--~~~~r  167 (421)
                      ...+.|+.+.....|   .+|++|.+++. .|.+|+|||.......   ......+++|.||..|++|+++..  -|.||
T Consensus       105 ~k~~eWkk~~spn~P---~pRsshq~va~~s~~l~~fGGEfaSPnq---~qF~HYkD~W~fd~~trkweql~~~g~PS~R  178 (521)
T KOG1230|consen  105 TKKNEWKKVVSPNAP---PPRSSHQAVAVPSNILWLFGGEFASPNQ---EQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR  178 (521)
T ss_pred             ccccceeEeccCCCc---CCCccceeEEeccCeEEEeccccCCcch---hhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence            999999988443333   34899988877 4899999997543210   112346799999999999999854  47889


Q ss_pred             cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC---CCCCCCCeeEEEEccCCeEEEEeccC
Q 014650          168 GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE---MPRFRAGCVGFVAEESGEFWVMGGYG  244 (421)
Q Consensus       168 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~  244 (421)
                      ++|-+++..  .+|+++||....   .....+.+++++||..+-+|+.+.+   -|.||++|..++.-+ +.|||.||+.
T Consensus       179 SGHRMvawK--~~lilFGGFhd~---nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpq-g~i~vyGGYs  252 (521)
T KOG1230|consen  179 SGHRMVAWK--RQLILFGGFHDS---NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQ-GGIVVYGGYS  252 (521)
T ss_pred             ccceeEEee--eeEEEEcceecC---CCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCC-CcEEEEcchh
Confidence            999999999  999999998632   1233568999999999999999854   478999987666644 8999999986


Q ss_pred             CCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcc-cccccccc-------CeEEEEccccCCC---c
Q 014650          245 DSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMW-DEWERSRI-------GKIVVMEDENRGR---P  313 (421)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~-------g~i~v~GG~~~g~---~  313 (421)
                      ....-.. +--+....+++.+++..+       +-..=.|+.+.+.. .|.+|+..       ++.+.+||..+-.   .
T Consensus       253 K~~~kK~-~dKG~~hsDmf~L~p~~~-------~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE  324 (521)
T KOG1230|consen  253 KQRVKKD-VDKGTRHSDMFLLKPEDG-------REDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE  324 (521)
T ss_pred             Hhhhhhh-hhcCceeeeeeeecCCcC-------CCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence            5332111 111245667888888774       11123789885542 33355543       6889999975200   0


Q ss_pred             eEEEecCCceEEEeCCCCceeEe
Q 014650          314 EVFMLDKFDILRYDMGLNRWLKE  336 (421)
Q Consensus       314 ~~~~~~~~~v~~yd~~~~~W~~~  336 (421)
                      .+-....++++.||...++|.+.
T Consensus       325 sl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  325 SLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             hhhhhhhhhhhheecccchhhHh
Confidence            01111247899999999999986

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=1.6e-22  Score=187.03  Aligned_cols=279  Identities=17%  Similarity=0.223  Sum_probs=198.9

Q ss_pred             hHHhhhcCCc-cccccc--ccccCCceEEEeCCC--CCCCccEEEeCCCCcEEEC---CCCCCCCCCCCCcceEEEEeCC
Q 014650           50 SWFLFFSSRT-LVFDRH--KFNSQSDLLCIFPQD--PSISSPFLFDAANRACRPL---PPLPCNPSTYSLCNFTSISLGP  121 (421)
Q Consensus        50 ~W~~l~~~~~-~~~~~~--~~~~~~~~~~~~g~~--~~~~~~~~~d~~~~~W~~l---~~l~~~~~~~~r~~~~~~~~~~  121 (421)
                      +|+.+..+.. .++.|+  +....+.++++|||.  ...+++..||..+++|..-   .++|.+     ...|+.+..+.
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg-----cAA~GfvcdGt   92 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG-----CAAFGFVCDGT   92 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc-----hhhcceEecCc
Confidence            5766654432 222222  245567888888874  4677899999999999753   355543     56788889999


Q ss_pred             EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc-------cCCCccceEEEEEccCCEEEEEcCCccccccC
Q 014650          122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP-------MISPRGSFACAAVRSLNQIIVAGGGSRHSLFG  194 (421)
Q Consensus       122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~-------~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~  194 (421)
                      +||+|||+...+.        .++++|......-.|+++.+       +|.||.+|+...++  ++-|+|||........
T Consensus        93 rilvFGGMvEYGk--------YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g--nKcYlFGGLaNdseDp  162 (830)
T KOG4152|consen   93 RILVFGGMVEYGK--------YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG--NKCYLFGGLANDSEDP  162 (830)
T ss_pred             eEEEEccEeeecc--------ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec--cEeEEeccccccccCc
Confidence            9999999987764        67777776677777888743       57789999999999  9999999975332111


Q ss_pred             --CCCCccceEEEEECCCCc----eEEC---CCCCCCCCCeeEEEEcc----CCeEEEEeccCCCccccccccceeeech
Q 014650          195 --AAGSRISSVERYDVAKNE----WVSM---DEMPRFRAGCVGFVAEE----SGEFWVMGGYGDSRTISGVLPVDEYYRD  261 (421)
Q Consensus       195 --~~~~~~~~~~~yd~~t~~----W~~~---~~~~~~r~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~  261 (421)
                        .-..+++++++.+..-+.    |...   +.+|.||..|.++++..    ..++||+||.++           ..+.+
T Consensus       163 knNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-----------~RLgD  231 (830)
T KOG4152|consen  163 KNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-----------CRLGD  231 (830)
T ss_pred             ccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-----------ccccc
Confidence              123568888888877543    8753   67899999999888832    157999999877           45678


Q ss_pred             heehhhhccCCcCCCCCCCCCCceEecCc-ccccccccc------CeEEEEcccc---CCC-------ceEEEecCCceE
Q 014650          262 AVVMQLKKKKKTDDHDDGDRGTWREVGDM-WDEWERSRI------GKIVVMEDEN---RGR-------PEVFMLDKFDIL  324 (421)
Q Consensus       262 ~~~yd~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~------g~i~v~GG~~---~g~-------~~~~~~~~~~v~  324 (421)
                      +|.+|+++-            .|.+..-- ..+.+|+.+      +++|++||..   ...       .+..  -++.+-
T Consensus       232 LW~Ldl~Tl------------~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk--CTssl~  297 (830)
T KOG4152|consen  232 LWTLDLDTL------------TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK--CTSSLA  297 (830)
T ss_pred             eeEEeccee------------ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceee--ecccee
Confidence            899999888            99887422 112245544      6999999975   110       0011  135677


Q ss_pred             EEeCCCCceeEec--ccCC--CCCCCCceEEEEeCCeEEEEEeecCCC
Q 014650          325 RYDMGLNRWLKET--TIPE--IRPCKKPLGFIVLDGELYVMTVLKGSD  368 (421)
Q Consensus       325 ~yd~~~~~W~~~~--~~~~--~~~~r~~~~~~~~~~~lyv~GG~~~~~  368 (421)
                      .+|..+..|+.+-  .+-+  .+..|.+|+++.+++++|+-.|++|..
T Consensus       298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr  345 (830)
T KOG4152|consen  298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR  345 (830)
T ss_pred             eeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhh
Confidence            8899999999972  1111  122789999999999999999999875

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=3.7e-20  Score=171.56  Aligned_cols=289  Identities=15%  Similarity=0.188  Sum_probs=192.9

Q ss_pred             CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccce
Q 014650           94 RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSF  170 (421)
Q Consensus        94 ~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~  170 (421)
                      -+|+.+.....| ..-+|.+|.++++...|.||||-+.          ...+++++||..+|+|-.-   .+.|.+.+.|
T Consensus        17 ~rWrrV~~~tGP-vPrpRHGHRAVaikELiviFGGGNE----------GiiDELHvYNTatnqWf~PavrGDiPpgcAA~   85 (830)
T KOG4152|consen   17 VRWRRVQQSTGP-VPRPRHGHRAVAIKELIVIFGGGNE----------GIIDELHVYNTATNQWFAPAVRGDIPPGCAAF   85 (830)
T ss_pred             cceEEEecccCC-CCCccccchheeeeeeEEEecCCcc----------cchhhhhhhccccceeecchhcCCCCCchhhc
Confidence            468776443222 0134899999999999999999542          3678899999999999643   5678888889


Q ss_pred             EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-------CCCCCCCCeeEEEEccCCeEEEEecc
Q 014650          171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-------EMPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                      +.+..+  .+||+|||..+      -+++.++++.+-...-.|+++.       +.|-||-+|+-.++.  +|-|+|||.
T Consensus        86 GfvcdG--trilvFGGMvE------YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g--nKcYlFGGL  155 (830)
T KOG4152|consen   86 GFVCDG--TRILVFGGMVE------YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG--NKCYLFGGL  155 (830)
T ss_pred             ceEecC--ceEEEEccEee------eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec--cEeEEeccc
Confidence            999988  99999999763      3566666544444444566663       356788888655555  899999997


Q ss_pred             CCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEe---cCcccccccccc------------CeEEEEccc
Q 014650          244 GDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV---GDMWDEWERSRI------------GKIVVMEDE  308 (421)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~---~~~~~~~~~~~~------------g~i~v~GG~  308 (421)
                      .++.+- .--+.-.|+++++..++..++.        --.|...   ..+|.  +|..+            .++|++||.
T Consensus       156 aNdseD-pknNvPrYLnDlY~leL~~Gsg--------vv~W~ip~t~Gv~P~--pRESHTAViY~eKDs~~skmvvyGGM  224 (830)
T KOG4152|consen  156 ANDSED-PKNNVPRYLNDLYILELRPGSG--------VVAWDIPITYGVLPP--PRESHTAVIYTEKDSKKSKMVVYGGM  224 (830)
T ss_pred             cccccC-cccccchhhcceEEEEeccCCc--------eEEEecccccCCCCC--CcccceeEEEEeccCCcceEEEEccc
Confidence            543321 0011125667777776654311        1157655   22332  34433            478999987


Q ss_pred             cCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccc-cceeeEEE
Q 014650          309 NRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHK-RAGCLFIQ  387 (421)
Q Consensus       309 ~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~v~  387 (421)
                       .|.      +..++|..|.++..|.+...-..++.+|.-|++..+++++|||||+---.--..-..++++ ..-.+.+-
T Consensus       225 -~G~------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~  297 (830)
T KOG4152|consen  225 -SGC------RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLA  297 (830)
T ss_pred             -ccc------cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecccee
Confidence             454      3489999999999999975444444478999999999999999997321100000011111 23345778


Q ss_pred             EEeCCcceeeEecc--cC--CCCCCCCccceeEEEeeC
Q 014650          388 IYHPRKKTWRYIFT--KP--PFPQPLDFGTAIMCTVRL  421 (421)
Q Consensus       388 ~yd~~~~~W~~i~~--~p--~~~~~~~~~~~~~~~~~~  421 (421)
                      ++|..+.+|..+..  +-  --|..|..|||+.+.-||
T Consensus       298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl  335 (830)
T KOG4152|consen  298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL  335 (830)
T ss_pred             eeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence            89999999988741  11  135678899999888765

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.80  E-value=7.6e-18  Score=150.80  Aligned_cols=277  Identities=13%  Similarity=0.195  Sum_probs=184.0

Q ss_pred             hhhcCCcccccccccccCCceEEEeCCCCCCCccEEEeCC--CCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccc
Q 014650           53 LFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAA--NRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSH  130 (421)
Q Consensus        53 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~--~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~  130 (421)
                      +++..|...+-- .-+.....+|++-| +.-..++..|..  ...|++++.+|..    .|....+++++++||||||..
T Consensus        29 ~lPdlPvg~KnG-~Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~----~rnqa~~a~~~~kLyvFgG~G  102 (381)
T COG3055          29 QLPDLPVGFKNG-AGALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGG----ARNQAVAAVIGGKLYVFGGYG  102 (381)
T ss_pred             cCCCCCcccccc-ccceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCc----ccccchheeeCCeEEEeeccc
Confidence            344444433332 22334446666544 233457777765  4789999999975    488889999999999999986


Q ss_pred             cCCCCCCCCCCCCCCeEEEEeCccCceeecccc-CCCccceEEEEEccCCEEEEEcCCccccccC---------------
Q 014650          131 FDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM-ISPRGSFACAAVRSLNQIIVAGGGSRHSLFG---------------  194 (421)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~---------------  194 (421)
                      ....    ......+++|+|||.+|+|.++... |..-..+.++.++. .+||++||.+..- |+               
T Consensus       103 k~~~----~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~-~~i~f~GGvn~~i-f~~yf~dv~~a~~d~~~  176 (381)
T COG3055         103 KSVS----SSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG-TKIYFFGGVNQNI-FNGYFEDVGAAGKDKEA  176 (381)
T ss_pred             cCCC----CCceEeeeeEEecCCCChhheeccccccccccceeEecCC-ceEEEEccccHHh-hhhhHHhhhhhcccHHH
Confidence            5432    2345778999999999999998653 56677888888882 4999999975321 11               


Q ss_pred             -------------CCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeech
Q 014650          195 -------------AAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD  261 (421)
Q Consensus       195 -------------~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  261 (421)
                                   ........+..|+|.++.|+.+...|..-...++++..+ +++.++.|.-...     +++.+    
T Consensus       177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~-n~~~lInGEiKpG-----LRt~~----  246 (381)
T COG3055         177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKG-NKLTLINGEIKPG-----LRTAE----  246 (381)
T ss_pred             HHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecC-CeEEEEcceecCC-----ccccc----
Confidence                         112335568889999999999987776544444555555 8899988864433     11112    


Q ss_pred             heehhhhccCCcCCCCCCCCCCceEecCcccccccc-----------ccCeEEEEcccc-CC------CceEEEec----
Q 014650          262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS-----------RIGKIVVMEDEN-RG------RPEVFMLD----  319 (421)
Q Consensus       262 ~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-----------~~g~i~v~GG~~-~g------~~~~~~~~----  319 (421)
                      +.+++...+          .-+|..++++|.+....           .++.+++.||.. .|      ...+|..+    
T Consensus       247 ~k~~~~~~~----------~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K  316 (381)
T COG3055         247 VKQADFGGD----------NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSK  316 (381)
T ss_pred             eeEEEeccC----------ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhh
Confidence            334444322          23899998887642211           125677777764 11      11122221    


Q ss_pred             --CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecC
Q 014650          320 --KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKG  366 (421)
Q Consensus       320 --~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~  366 (421)
                        ..+|+.+|  .+.|+.+..||.++   .....+..+++||++||.+.
T Consensus       317 ~w~~~Vy~~d--~g~Wk~~GeLp~~l---~YG~s~~~nn~vl~IGGE~~  360 (381)
T COG3055         317 SWNSEVYIFD--NGSWKIVGELPQGL---AYGVSLSYNNKVLLIGGETS  360 (381)
T ss_pred             hhhceEEEEc--CCceeeecccCCCc---cceEEEecCCcEEEEccccC
Confidence              35788887  88899999999853   55567788999999999863

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.57  E-value=2.5e-13  Score=122.09  Aligned_cols=284  Identities=19%  Similarity=0.274  Sum_probs=171.5

Q ss_pred             EECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc--CceeeccccCCC-ccceEEE
Q 014650           97 RPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT--FSWERIAPMISP-RGSFACA  173 (421)
Q Consensus        97 ~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~-r~~~~~~  173 (421)
                      .++|++|.+     .-+-+-+.+++.+||-=|.             .-...+..|...  ..|++++.+|.+ |-....+
T Consensus        28 ~~lPdlPvg-----~KnG~Ga~ig~~~YVGLGs-------------~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a   89 (381)
T COG3055          28 GQLPDLPVG-----FKNGAGALIGDTVYVGLGS-------------AGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAA   89 (381)
T ss_pred             ccCCCCCcc-----ccccccceecceEEEEecc-------------CCccceehhhhcCCCCceEcccCCCcccccchhe
Confidence            346778875     2222555678899998774             234567777644  579999999865 8888889


Q ss_pred             EEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC-CCCCCCeeEEEEccCCeEEEEeccCCCcc---c
Q 014650          174 AVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-PRFRAGCVGFVAEESGEFWVMGGYGDSRT---I  249 (421)
Q Consensus       174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~~~iyv~GG~~~~~~---~  249 (421)
                      +++  ++|||+||......  ...+..+++++|||.+++|+.+... |..-.++.++...+ .+||++||++....   +
T Consensus        90 ~~~--~kLyvFgG~Gk~~~--~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~-~~i~f~GGvn~~if~~yf  164 (381)
T COG3055          90 VIG--GKLYVFGGYGKSVS--SSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG-TKIYFFGGVNQNIFNGYF  164 (381)
T ss_pred             eeC--CeEEEeeccccCCC--CCceEeeeeEEecCCCChhheeccccccccccceeEecCC-ceEEEEccccHHhhhhhH
Confidence            999  99999999753311  1245588999999999999988543 44444455555553 59999999865431   0


Q ss_pred             ccc---ccceeeechh--eehhhhcc----CCcCCCCCCCCCCceEecCcccccccc-----ccCeEEEEcccc-CCCce
Q 014650          250 SGV---LPVDEYYRDA--VVMQLKKK----KKTDDHDDGDRGTWREVGDMWDEWERS-----RIGKIVVMEDEN-RGRPE  314 (421)
Q Consensus       250 ~~~---~~~~~~~~~~--~~yd~~~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~-----~~g~i~v~GG~~-~g~~~  314 (421)
                      ..+   -...+-++.+  ..||....    -.-...|||++++|+.+...|--....     ..+++.++.|.+ .|   
T Consensus       165 ~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG---  241 (381)
T COG3055         165 EDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG---  241 (381)
T ss_pred             HhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC---
Confidence            000   0000001111  01221111    011257899999999997555321111     124677777764 22   


Q ss_pred             EEEecCCceEEEeCC--CCceeEecccCCCCCCC-Cc---eEEEEeCCeEEEEEeecCCCcc-----ccccccc-cccce
Q 014650          315 VFMLDKFDILRYDMG--LNRWLKETTIPEIRPCK-KP---LGFIVLDGELYVMTVLKGSDLN-----ETRRSQQ-HKRAG  382 (421)
Q Consensus       315 ~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~r-~~---~~~~~~~~~lyv~GG~~~~~~~-----~~~~~~~-~~~~~  382 (421)
                         +++..+..++..  .-+|..+.++|.+.... .+   +-.-..++.+.|.||.+-....     .-...++ ..+..
T Consensus       242 ---LRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w  318 (381)
T COG3055         242 ---LRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSW  318 (381)
T ss_pred             ---ccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhh
Confidence               234667777665  45899998887754221 11   1122557888888885422110     0000111 23556


Q ss_pred             eeEEEEEeCCcceeeEecccCCCCCCCCccce
Q 014650          383 CLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTA  414 (421)
Q Consensus       383 ~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~  414 (421)
                      .++|+++|  .+.|+.+..+|+   ..++.++
T Consensus       319 ~~~Vy~~d--~g~Wk~~GeLp~---~l~YG~s  345 (381)
T COG3055         319 NSEVYIFD--NGSWKIVGELPQ---GLAYGVS  345 (381)
T ss_pred             hceEEEEc--CCceeeecccCC---CccceEE
Confidence            67999998  999999988874   4455543

>PF13964 Kelch_6: Kelch motif

Probab=99.27  E-value=9.7e-12  Score=82.56  Aligned_cols=49  Identities=29%  Similarity=0.544  Sum_probs=44.2

Q ss_pred             CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCc
Q 014650          111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPR  167 (421)
Q Consensus       111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r  167 (421)
                      |.+|++++++++|||+||.....        ..++++++||+.|++|+++++||.||
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~~--------~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNSG--------KYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCCC--------CccccEEEEcCCCCcEEECCCCCCCC
Confidence            88999999999999999986532        46899999999999999999999987

>PF13964 Kelch_6: Kelch motif

Probab=99.23  E-value=2.8e-11  Score=80.35  Aligned_cols=50  Identities=36%  Similarity=0.585  Sum_probs=45.2

Q ss_pred             CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ||..|++++++  ++|||+||...      .....+++++||+++++|+++++||.||
T Consensus         1 pR~~~s~v~~~--~~iyv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVG--GKIYVFGGYDN------SGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEEC--CEEEEECCCCC------CCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            68899999999  99999999862      2567899999999999999999999987

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.13  E-value=6.1e-11  Score=110.74  Aligned_cols=269  Identities=14%  Similarity=0.118  Sum_probs=157.2

Q ss_pred             CCCCcEEECCCCCCC-----CCCCCCcceEEEEeCC--EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc--
Q 014650           91 AANRACRPLPPLPCN-----PSTYSLCNFTSISLGP--YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA--  161 (421)
Q Consensus        91 ~~~~~W~~l~~l~~~-----~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~--  161 (421)
                      +.+.+|.++++-...     -+...|.+|.++...+  .||+.||++.-         +.+.++|+|+...+.|..+.  
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~---------~~l~DFW~Y~v~e~~W~~iN~~  306 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT---------QDLADFWAYSVKENQWTCINRD  306 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc---------hhHHHHHhhcCCcceeEEeecC
Confidence            445678777543210     1124589999998854  99999999643         35789999999999998774  


Q ss_pred             -ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC------CCCCCCCeeEEEEccC
Q 014650          162 -PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE------MPRFRAGCVGFVAEES  234 (421)
Q Consensus       162 -~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~------~~~~r~~~~~~~~~~~  234 (421)
                       ..|..|++|-++...+..++|++|-+-..+.- ......+++|+||..++.|.-+.-      -|...+.|.+++-.+.
T Consensus       307 t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r-~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k  385 (723)
T KOG2437|consen  307 TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVR-NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK  385 (723)
T ss_pred             CCCCcchhhhhhhhhhhHhHHhhhhhccccccc-cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence             36788999999987722389999976322100 011335689999999999988642      2344455666655533


Q ss_pred             CeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccc--------ccccc--------
Q 014650          235 GEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE--------WERSR--------  298 (421)
Q Consensus       235 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~--------~~~~~--------  298 (421)
                      +-|||+||.......       ..+..++.||....            .|.....-...        ..|..        
T Consensus       386 ~~iyVfGGr~~~~~e-------~~f~GLYaf~~~~~------------~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~  446 (723)
T KOG2437|consen  386 HMIYVFGGRILTCNE-------PQFSGLYAFNCQCQ------------TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK  446 (723)
T ss_pred             ceEEEecCeeccCCC-------ccccceEEEecCCc------------cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC
Confidence            459999997543321       23555777777665            88766321110        01111        


Q ss_pred             cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEeccc---CC-CCCCCCceEEE---EeCCeEEEEEeecCCCccc
Q 014650          299 IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTI---PE-IRPCKKPLGFI---VLDGELYVMTVLKGSDLNE  371 (421)
Q Consensus       299 ~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~-~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~  371 (421)
                      ...+|++||.  +...-.    .-...||+....=.++...   .. ....+....-+   .-...|.+.-|.....   
T Consensus       447 n~~ly~fggq--~s~~El----~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~---  517 (723)
T KOG2437|consen  447 NRCLYVFGGQ--RSKTEL----NLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDK---  517 (723)
T ss_pred             CCeEEeccCc--ccceEE----eehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhc---
Confidence            1478999987  222111    2223343333322222100   00 00011111111   1235677777765332   


Q ss_pred             cccccccc--cceeeEEEEEeCCcceeeEecccC
Q 014650          372 TRRSQQHK--RAGCLFIQIYHPRKKTWRYIFTKP  403 (421)
Q Consensus       372 ~~~~~~~~--~~~~~~v~~yd~~~~~W~~i~~~p  403 (421)
                            .+  .+..+..++|++.+++|..|....
T Consensus       518 ------~~~e~~~rns~wi~~i~~~~w~cI~~I~  545 (723)
T KOG2437|consen  518 ------EKREENVRNSFWIYDIVRNSWSCIYKID  545 (723)
T ss_pred             ------cCccccccCcEEEEEecccchhhHhhhH
Confidence                  11  223468899999999998886543

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.03  E-value=3.8e-10  Score=73.82  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=41.7

Q ss_pred             CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650          111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI  164 (421)
Q Consensus       111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~  164 (421)
                      |.+|++++.+++|||+||.+...        ..++++++||+.+++|+.+++||
T Consensus         2 R~~~~~~~~~~~iyv~GG~~~~~--------~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    2 RSGHAAVVVGNKIYVIGGYDGNN--------QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             BBSEEEEEETTEEEEEEEBESTS--------SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CccCEEEEECCEEEEEeeecccC--------ceeeeEEEEeCCCCEEEEcCCCC
Confidence            89999999999999999997633        47899999999999999999986

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.01  E-value=1.2e-09  Score=71.52  Aligned_cols=47  Identities=19%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC
Q 014650          345 CKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP  403 (421)
Q Consensus       345 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p  403 (421)
                      +|..+++++++++|||+||.++.            ....+++++||+++++|+.++++|
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~------------~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGN------------NQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBEST------------SSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeeccc------------CceeeeEEEEeCCCCEEEEcCCCC
Confidence            36889999999999999999862            234589999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.97  E-value=1.1e-09  Score=72.17  Aligned_cols=49  Identities=24%  Similarity=0.536  Sum_probs=42.4

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEE
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV  175 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~  175 (421)
                      +++|||+||.+..+.       ..++++|+||+.+++|++++++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~-------~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGG-------TRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCC-------CEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            579999999873221       4689999999999999999999999999999874

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.84  E-value=7.3e-09  Score=97.13  Aligned_cols=159  Identities=14%  Similarity=0.172  Sum_probs=108.7

Q ss_pred             CCceEECCC----------CCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCC
Q 014650          210 KNEWVSMDE----------MPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDG  279 (421)
Q Consensus       210 t~~W~~~~~----------~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~  279 (421)
                      +..|.++++          -|..|.+|.++.-.+.++||+.||+++..          -+.+.|.|....+         
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~----------~l~DFW~Y~v~e~---------  298 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ----------DLADFWAYSVKEN---------  298 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch----------hHHHHHhhcCCcc---------
Confidence            446877643          24567778777766557999999999864          3456778877776         


Q ss_pred             CCCCceEecCcc-cccccccc--------CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC---CCCCCC
Q 014650          280 DRGTWREVGDMW-DEWERSRI--------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE---IRPCKK  347 (421)
Q Consensus       280 ~~~~W~~~~~~~-~~~~~~~~--------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~~~~r~  347 (421)
                         .|+.+..-. .|+.|+++        .++|++|..++....-.....+++|+||..++.|..+.--..   .+-.-+
T Consensus       299 ---~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vf  375 (723)
T KOG2437|consen  299 ---QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVF  375 (723)
T ss_pred             ---eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceee
Confidence               999985433 45567766        389999987533222111234789999999999999842111   000235


Q ss_pred             ceEEEEeCCe--EEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEec
Q 014650          348 PLGFIVLDGE--LYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIF  400 (421)
Q Consensus       348 ~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  400 (421)
                      .|.+++.+++  |||+||+.-...          ...-..++.||.....|+.+.
T Consensus       376 DHqM~Vd~~k~~iyVfGGr~~~~~----------e~~f~GLYaf~~~~~~w~~l~  420 (723)
T KOG2437|consen  376 DHQMCVDSEKHMIYVFGGRILTCN----------EPQFSGLYAFNCQCQTWKLLR  420 (723)
T ss_pred             cceeeEecCcceEEEecCeeccCC----------CccccceEEEecCCccHHHHH
Confidence            6889999988  999999853221          112247899999999998764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.81  E-value=5.3e-09  Score=68.99  Aligned_cols=46  Identities=24%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             CcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650          111 LCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI  164 (421)
Q Consensus       111 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~  164 (421)
                      |.+|+++.+ +++|||+||.+.++        ..++++|+||+.+++|++++++|
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~~--------~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSSG--------SPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE-T--------EE---EEEEETTTTEEEE--SS-
T ss_pred             cceEEEEEEeCCeEEEECCCCCCC--------cccCCEEEEECCCCEEEECCCCC
Confidence            889999988 58999999997654        36899999999999999998887

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.79  E-value=7.9e-09  Score=68.14  Aligned_cols=48  Identities=29%  Similarity=0.612  Sum_probs=31.1

Q ss_pred             CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC
Q 014650          166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP  220 (421)
Q Consensus       166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~  220 (421)
                      ||.+|+++.+++ ++|||+||.+.      ....++++++||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~-~~i~v~GG~~~------~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGD-NSIYVFGGRDS------SGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-T-TEEEEE--EEE-------TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeC-CeEEEECCCCC------CCcccCCEEEEECCCCEEEECCCCC
Confidence            689999999954 89999999873      2367999999999999999998887

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.79  E-value=1.2e-08  Score=67.13  Aligned_cols=49  Identities=14%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             CCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC
Q 014650          345 CKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP  403 (421)
Q Consensus       345 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p  403 (421)
                      +|.++++++++++|||+||+...          ......+++++||+++++|+.++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~----------~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTD----------NGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccC----------CCCcccceeEEEECCCCEEeecCCCC
Confidence            36889999999999999999111          11234479999999999999987654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.78  E-value=2.2e-08  Score=65.94  Aligned_cols=49  Identities=27%  Similarity=0.467  Sum_probs=41.8

Q ss_pred             CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC
Q 014650          166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP  220 (421)
Q Consensus       166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~  220 (421)
                      ||..|++++++  ++|||+||...    +......+++++||+++++|+.+++|+
T Consensus         1 ~r~~hs~~~~~--~kiyv~GG~~~----~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLD--GKIYVFGGYGT----DNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEEC--CEEEEECCccc----CCCCcccceeEEEECCCCEEeecCCCC
Confidence            68899999999  99999999811    134577899999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=98.72  E-value=1.7e-08  Score=65.81  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEc
Q 014650          122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR  176 (421)
Q Consensus       122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~  176 (421)
                      +|||+||....         ...+++++||+.+++|+.+++|+.+|..|++++++
T Consensus         1 ~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFDGG---------QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN   46 (47)
T ss_pred             CEEEEeCCCCC---------ceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence            48999997531         25789999999999999999999999999998876

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.72  E-value=4.3e-08  Score=64.49  Aligned_cols=47  Identities=30%  Similarity=0.604  Sum_probs=41.1

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      ++|||+||.+.     .....++++++||+.+++|++++++|.+|..|++++
T Consensus         2 ~~~~vfGG~~~-----~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    2 NKLYVFGGYDD-----DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CEEEEECCcCC-----CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            89999999862     245778999999999999999999999999987765

>smart00612 Kelch Kelch domain

Probab=98.59  E-value=9.3e-08  Score=62.26  Aligned_cols=46  Identities=39%  Similarity=0.618  Sum_probs=38.5

Q ss_pred             EEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEc
Q 014650          180 QIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE  232 (421)
Q Consensus       180 ~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~  232 (421)
                      +||++||..       .....+++++||+.+++|+.+++|+.+|..++++++.
T Consensus         1 ~iyv~GG~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~   46 (47)
T smart00612        1 KIYVVGGFD-------GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN   46 (47)
T ss_pred             CEEEEeCCC-------CCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence            489999975       2355789999999999999999999999887766553

>PLN02772 guanylate kinase

Probab=98.47  E-value=1.1e-06  Score=82.80  Aligned_cols=83  Identities=20%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             CCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccceEEEEEccCCEEEEEcC
Q 014650          110 SLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSFACAAVRSLNQIIVAGG  186 (421)
Q Consensus       110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG  186 (421)
                      ++..++++.+++++||+||.+..+        ...+.+++||+.|++|...   ...|.+|.+|+++++++ ++|+|+++
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~--------~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~-~rilv~~~   94 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGN--------TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK-DRILVIKK   94 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCc--------cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC-ceEEEEeC
Confidence            378899999999999999975432        2568999999999999875   45688999999999976 89999988


Q ss_pred             CccccccCCCCCccceEEEEECCC
Q 014650          187 GSRHSLFGAAGSRISSVERYDVAK  210 (421)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~yd~~t  210 (421)
                      ..         ..-.++|.+...|
T Consensus        95 ~~---------~~~~~~w~l~~~t  109 (398)
T PLN02772         95 GS---------APDDSIWFLEVDT  109 (398)
T ss_pred             CC---------CCccceEEEEcCC
Confidence            54         2235677766665

>PLN02772 guanylate kinase

Probab=98.36  E-value=2.1e-06  Score=80.86  Aligned_cols=73  Identities=19%  Similarity=0.307  Sum_probs=61.3

Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEE
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~  240 (421)
                      ..++.++++++++  +++||+||.+      +.....+.+++||..+++|...   +..|.||.+|+++++.+ ++|+|+
T Consensus        22 ~~~~~~~tav~ig--dk~yv~GG~~------d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~-~rilv~   92 (398)
T PLN02772         22 VKPKNRETSVTIG--DKTYVIGGNH------EGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK-DRILVI   92 (398)
T ss_pred             CCCCCcceeEEEC--CEEEEEcccC------CCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC-ceEEEE
Confidence            3478899999999  9999999976      2333678999999999999874   57799999999888877 999999


Q ss_pred             eccCC
Q 014650          241 GGYGD  245 (421)
Q Consensus       241 GG~~~  245 (421)
                      ++...
T Consensus        93 ~~~~~   97 (398)
T PLN02772         93 KKGSA   97 (398)
T ss_pred             eCCCC
Confidence            87544

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.34  E-value=8.3e-05  Score=66.62  Aligned_cols=195  Identities=14%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             eEEEEeCccCceeeccccCCCcc---c--eEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRG---S--FACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~---~--~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      .+.++||.|.+|+.+|+.+.++.   .  .+....  .+.-+|..+....       .......+++|+..+++|+.+..
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-------~~~~~~~~~Vys~~~~~Wr~~~~   87 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-------GNRNQSEHQVYTLGSNSWRTIEC   87 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-------CCCCCccEEEEEeCCCCcccccc
Confidence            58999999999999987554311   1  111111  1002555554321       11134578999999999999874


Q ss_pred             CCCCC-CCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceE-ecCccccccc
Q 014650          219 MPRFR-AGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWRE-VGDMWDEWER  296 (421)
Q Consensus       219 ~~~~r-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~  296 (421)
                      .+... ....++.+.  |.||-+.......         .. ..+..||..+.            +|.. ++. |.....
T Consensus        88 ~~~~~~~~~~~v~~~--G~lyw~~~~~~~~---------~~-~~IvsFDl~~E------------~f~~~i~~-P~~~~~  142 (230)
T TIGR01640        88 SPPHHPLKSRGVCIN--GVLYYLAYTLKTN---------PD-YFIVSFDVSSE------------RFKEFIPL-PCGNSD  142 (230)
T ss_pred             CCCCccccCCeEEEC--CEEEEEEEECCCC---------Cc-EEEEEEEcccc------------eEeeeeec-Cccccc
Confidence            33211 112244444  8898887432211         00 12667777765            9995 432 221110


Q ss_pred             -cccCeEEEEccccCCCceEEEe------cCCceEEEe-CCCCceeEecccCCCCCCCC----ceEEEEeCCeEEEEEee
Q 014650          297 -SRIGKIVVMEDENRGRPEVFML------DKFDILRYD-MGLNRWLKETTIPEIRPCKK----PLGFIVLDGELYVMTVL  364 (421)
Q Consensus       297 -~~~g~i~v~GG~~~g~~~~~~~------~~~~v~~yd-~~~~~W~~~~~~~~~~~~r~----~~~~~~~~~~lyv~GG~  364 (421)
                       .....+..++|.+      ..+      ...+||+.+ ....+|+++-.++.+...+.    ....+..+++|++....
T Consensus       143 ~~~~~~L~~~~G~L------~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~  216 (230)
T TIGR01640       143 SVDYLSLINYKGKL------AVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED  216 (230)
T ss_pred             cccceEEEEECCEE------EEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence             1112344444442      111      113677764 44567998755542111111    12345667888887753


Q ss_pred             cCCCccccccccccccceeeEEEEEeCCcc
Q 014650          365 KGSDLNETRRSQQHKRAGCLFIQIYHPRKK  394 (421)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~  394 (421)
                      . ..               .-+..||+++|
T Consensus       217 ~-~~---------------~~~~~y~~~~~  230 (230)
T TIGR01640       217 E-NP---------------FYIFYYNVGEN  230 (230)
T ss_pred             C-Cc---------------eEEEEEeccCC
Confidence            1 11               14889998875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.23  E-value=1.7e-05  Score=70.50  Aligned_cols=86  Identities=16%  Similarity=0.236  Sum_probs=63.3

Q ss_pred             cEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc----Cceeecc
Q 014650           86 PFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT----FSWERIA  161 (421)
Q Consensus        86 ~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t----~~W~~~~  161 (421)
                      ...||+.+++++.+.. +...+   .+++ +..-++.++++||... +          .+.+..|+|.+    ..|...+
T Consensus        48 s~~yD~~tn~~rpl~v-~td~F---CSgg-~~L~dG~ll~tGG~~~-G----------~~~ir~~~p~~~~~~~~w~e~~  111 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV-QTDTF---CSGG-AFLPDGRLLQTGGDND-G----------NKAIRIFTPCTSDGTCDWTESP  111 (243)
T ss_pred             EEEEecCCCcEEeccC-CCCCc---ccCc-CCCCCCCEEEeCCCCc-c----------ccceEEEecCCCCCCCCceECc
Confidence            4589999999998853 33311   1222 2334789999999743 2          35677888876    6798775


Q ss_pred             -ccCCCccceEEEEEccCCEEEEEcCCc
Q 014650          162 -PMISPRGSFACAAVRSLNQIIVAGGGS  188 (421)
Q Consensus       162 -~~~~~r~~~~~~~~~~~~~iyv~GG~~  188 (421)
                       .|..+|-+.++..+.+ |+++|+||..
T Consensus       112 ~~m~~~RWYpT~~~L~D-G~vlIvGG~~  138 (243)
T PF07250_consen  112 NDMQSGRWYPTATTLPD-GRVLIVGGSN  138 (243)
T ss_pred             ccccCCCccccceECCC-CCEEEEeCcC
Confidence             5899999999999987 9999999974

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.21  E-value=1.2e-06  Score=56.93  Aligned_cols=41  Identities=24%  Similarity=0.491  Sum_probs=35.5

Q ss_pred             CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650           21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV   61 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~   61 (421)
                      |..||+|++.+||+.++..++.++..|||+|+.+..++.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            56899999999999999999999999999999999877543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.17  E-value=0.00011  Score=65.37  Aligned_cols=88  Identities=11%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC----CceEECC-CCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK----NEWVSMD-EMP  220 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~  220 (421)
                      .-..||+.|++++.+.- ..--.+.+.+.+.+ |++.+.||...         -.+.+..|++.+    ..|.+.+ .|.
T Consensus        47 ~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~d-G~ll~tGG~~~---------G~~~ir~~~p~~~~~~~~w~e~~~~m~  115 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPD-GRLLQTGGDND---------GNKAIRIFTPCTSDGTCDWTESPNDMQ  115 (243)
T ss_pred             EEEEEecCCCcEEeccC-CCCCcccCcCCCCC-CCEEEeCCCCc---------cccceEEEecCCCCCCCCceECccccc
Confidence            45679999999998763 33334444445544 99999999741         244577788876    5798875 589


Q ss_pred             CCCCCeeEEEEccCCeEEEEeccCC
Q 014650          221 RFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       221 ~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      .+|-..+.....+ |+++|+||...
T Consensus       116 ~~RWYpT~~~L~D-G~vlIvGG~~~  139 (243)
T PF07250_consen  116 SGRWYPTATTLPD-GRVLIVGGSNN  139 (243)
T ss_pred             CCCccccceECCC-CCEEEEeCcCC
Confidence            9998877777776 99999999874

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.15  E-value=6.7e-06  Score=51.89  Aligned_cols=42  Identities=26%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      +|.+|..|++++++  ++||++||.+.     ......+++++||..+.
T Consensus         1 ~P~~R~~hs~~~~~--~~iyi~GG~~~-----~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVG--NNIYIFGGYSG-----NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEEC--CEEEEEcCccC-----CCCCEECcEEEEECCCC
Confidence            47899999999999  99999999863     13567899999998763

>PF13854 Kelch_5: Kelch motif

Probab=98.12  E-value=7.5e-06  Score=51.67  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCCcceEEEEeCCEEEEEccccc-CCCCCCCCCCCCCCeEEEEeCccC
Q 014650          109 YSLCNFTSISLGPYIYLLGGSHF-DARSFPLDRPLPSDSAFRFNFLTF  155 (421)
Q Consensus       109 ~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~v~~yd~~t~  155 (421)
                      .+|.+|++++.+++|||+||.+. +.        ...+++|+||..++
T Consensus         3 ~~R~~hs~~~~~~~iyi~GG~~~~~~--------~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    3 SPRYGHSAVVVGNNIYIFGGYSGNNN--------SYSNDLYVLDLPSF   42 (42)
T ss_pred             CCccceEEEEECCEEEEEcCccCCCC--------CEECcEEEEECCCC
Confidence            34999999999999999999974 22        46899999998763

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.03  E-value=0.0018  Score=57.98  Aligned_cols=149  Identities=9%  Similarity=0.068  Sum_probs=84.4

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE---eC-CEEEEEcccccCCCCCCCCCCCCCCe
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS---LG-PYIYLLGGSHFDARSFPLDRPLPSDS  146 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~---~~-~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (421)
                      +.++++...    ..+..+||.|++|..+|+.+.+.....+..++.+.   .+ -+|..+.....+         .....
T Consensus         5 nGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---------~~~~~   71 (230)
T TIGR01640         5 DGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---------RNQSE   71 (230)
T ss_pred             ceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---------CCCcc
Confidence            455555432    45889999999999997654321101111111111   11 245555432111         12357


Q ss_pred             EEEEeCccCceeeccccCCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCCCCC
Q 014650          147 AFRFNFLTFSWERIAPMISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPRFRA  224 (421)
Q Consensus       147 v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~  224 (421)
                      +++|+..+++|+.+...+.. ......+.++  |.+|.+....       .......+..||..+++|.. ++ +|....
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~--G~lyw~~~~~-------~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~  141 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCIN--GVLYYLAYTL-------KTNPDYFIVSFDVSSERFKEFIP-LPCGNS  141 (230)
T ss_pred             EEEEEeCCCCccccccCCCCccccCCeEEEC--CEEEEEEEEC-------CCCCcEEEEEEEcccceEeeeee-cCcccc
Confidence            89999999999998743322 1112256677  9999987532       11112368899999999995 43 343321


Q ss_pred             ---CeeEEEEccCCeEEEEecc
Q 014650          225 ---GCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       225 ---~~~~~~~~~~~~iyv~GG~  243 (421)
                         .....+..+ |+|.++...
T Consensus       142 ~~~~~~~L~~~~-G~L~~v~~~  162 (230)
T TIGR01640       142 DSVDYLSLINYK-GKLAVLKQK  162 (230)
T ss_pred             ccccceEEEEEC-CEEEEEEec
Confidence               123344444 888887654

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.01  E-value=0.0035  Score=59.21  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=33.3

Q ss_pred             cCCCChHHHHHHHhcCC-CcchhHHHHhhhHhHHhhhcC
Q 014650           20 LIPGLPNDVASLILAFV-PYSHQSRLKQTCRSWFLFFSS   57 (421)
Q Consensus        20 ~~~~Lp~dl~~~~l~~l-p~~~~~~~~~v~k~W~~l~~~   57 (421)
                      -|+.||+||+..|..+| ...++.++++||+.||+-...
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            37899999999999999 467899999999999986653

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.81  E-value=2.2e-05  Score=49.25  Aligned_cols=39  Identities=28%  Similarity=0.546  Sum_probs=35.8

Q ss_pred             ChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           24 LPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        24 Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      ||+|++.+|+.+++..++.++..|||+|+.+...+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999998877543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.62  E-value=1.3e-05  Score=52.26  Aligned_cols=41  Identities=22%  Similarity=0.423  Sum_probs=34.3

Q ss_pred             CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650           21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV   61 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~   61 (421)
                      |..||+|++.+|+.+++..++..++.|||+|+++..+..+.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~   43 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW   43 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence            45799999999999999999999999999999999887653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.39  E-value=0.079  Score=47.26  Aligned_cols=116  Identities=12%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             ccEEEeCCCC--cEEECCCCCCCCCCCCCcceE--EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--ee
Q 014650           85 SPFLFDAANR--ACRPLPPLPCNPSTYSLCNFT--SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WE  158 (421)
Q Consensus        85 ~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~  158 (421)
                      .+.++|+.+.  .|+.  .+..+     .....  .+..++.||+..+               ...++++|..+.+  |+
T Consensus         4 ~l~~~d~~tG~~~W~~--~~~~~-----~~~~~~~~~~~~~~v~~~~~---------------~~~l~~~d~~tG~~~W~   61 (238)
T PF13360_consen    4 TLSALDPRTGKELWSY--DLGPG-----IGGPVATAVPDGGRVYVASG---------------DGNLYALDAKTGKVLWR   61 (238)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSS-----CSSEEETEEEETTEEEEEET---------------TSEEEEEETTTSEEEEE
T ss_pred             EEEEEECCCCCEEEEE--ECCCC-----CCCccceEEEeCCEEEEEcC---------------CCEEEEEECCCCCEEEE
Confidence            3667887654  3665  22211     12222  4447889998843               3579999987765  66


Q ss_pred             eccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eE-ECCCCCCCC-CCeeEEEEccC
Q 014650          159 RIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WV-SMDEMPRFR-AGCVGFVAEES  234 (421)
Q Consensus       159 ~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~r-~~~~~~~~~~~  234 (421)
                      .-.  +.+-... ....+  +.+|+..+.             +.+..+|.++.+  |+ .....+... .......+.+ 
T Consensus        62 ~~~--~~~~~~~-~~~~~--~~v~v~~~~-------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-  122 (238)
T PF13360_consen   62 FDL--PGPISGA-PVVDG--GRVYVGTSD-------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-  122 (238)
T ss_dssp             EEC--SSCGGSG-EEEET--TEEEEEETT-------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-
T ss_pred             eec--cccccce-eeecc--cccccccce-------------eeeEecccCCcceeeeeccccccccccccccCceEec-
Confidence            443  2221122 35666  889888642             158899988875  98 443322221 1222333333 


Q ss_pred             CeEEEEe
Q 014650          235 GEFWVMG  241 (421)
Q Consensus       235 ~~iyv~G  241 (421)
                      +.+|+..
T Consensus       123 ~~~~~~~  129 (238)
T PF13360_consen  123 DRLYVGT  129 (238)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            6666654

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.34  E-value=0.063  Score=52.26  Aligned_cols=221  Identities=13%  Similarity=0.127  Sum_probs=113.1

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCC--CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAAN--RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~--~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      .+..+|+.+.+   ..++++|..+  ..|+.-  ++.+      ...+.++.++.||+..+               ...+
T Consensus       119 ~~~~v~v~~~~---g~l~ald~~tG~~~W~~~--~~~~------~~ssP~v~~~~v~v~~~---------------~g~l  172 (394)
T PRK11138        119 AGGKVYIGSEK---GQVYALNAEDGEVAWQTK--VAGE------ALSRPVVSDGLVLVHTS---------------NGML  172 (394)
T ss_pred             ECCEEEEEcCC---CEEEEEECCCCCCccccc--CCCc------eecCCEEECCEEEEECC---------------CCEE
Confidence            34556665432   3488999876  458653  2221      11233456888887543               2468


Q ss_pred             EEEeCccCc--eeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCC
Q 014650          148 FRFNFLTFS--WERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPR  221 (421)
Q Consensus       148 ~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~  221 (421)
                      +.+|+.+.+  |+.-...+.  .+...+-++.+  +.+|+..+.             ..+..+|.++++  |+.-...+.
T Consensus       173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             EEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEcCC-------------CEEEEEEccCChhhheeccccCC
Confidence            999988766  876433221  12222334455  777765442             236778888764  874211111


Q ss_pred             C-----CC--CeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc
Q 014650          222 F-----RA--GCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW  294 (421)
Q Consensus       222 ~-----r~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~  294 (421)
                      .     +.  ....-++.+ +.+|+.+. ++               .++++|+.++          ...|+.--.-.. .
T Consensus       238 ~~~~~~~~~~~~~sP~v~~-~~vy~~~~-~g---------------~l~ald~~tG----------~~~W~~~~~~~~-~  289 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVG-GVVYALAY-NG---------------NLVALDLRSG----------QIVWKREYGSVN-D  289 (394)
T ss_pred             CccchhcccccCCCcEEEC-CEEEEEEc-CC---------------eEEEEECCCC----------CEEEeecCCCcc-C
Confidence            1     00  012222334 78887653 21               1446666654          125875321110 0


Q ss_pred             cccccCeEEEEccccCCCceEEEecCCceEEEeCCCC--ceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccc
Q 014650          295 ERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLN--RWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNET  372 (421)
Q Consensus       295 ~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  372 (421)
                      .....+++|+....            ..+..+|..+.  .|+.-. +.    .+...+.+..++.||+... +       
T Consensus       290 ~~~~~~~vy~~~~~------------g~l~ald~~tG~~~W~~~~-~~----~~~~~sp~v~~g~l~v~~~-~-------  344 (394)
T PRK11138        290 FAVDGGRIYLVDQN------------DRVYALDTRGGVELWSQSD-LL----HRLLTAPVLYNGYLVVGDS-E-------  344 (394)
T ss_pred             cEEECCEEEEEcCC------------CeEEEEECCCCcEEEcccc-cC----CCcccCCEEECCEEEEEeC-C-------
Confidence            11122455554422            45667777654  475421 11    1223344567899987543 2       


Q ss_pred             ccccccccceeeEEEEEeCCcce
Q 014650          373 RRSQQHKRAGCLFIQIYHPRKKT  395 (421)
Q Consensus       373 ~~~~~~~~~~~~~v~~yd~~~~~  395 (421)
                                 -.++++|+.+++
T Consensus       345 -----------G~l~~ld~~tG~  356 (394)
T PRK11138        345 -----------GYLHWINREDGR  356 (394)
T ss_pred             -----------CEEEEEECCCCC
Confidence                       157778887765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.28  E-value=0.12  Score=50.20  Aligned_cols=114  Identities=8%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCC--CcEEECCCCCCCCCC---CCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCC
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAAN--RACRPLPPLPCNPST---YSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLP  143 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~--~~W~~l~~l~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  143 (421)
                      ..++.+|+....   ..+++||..+  ..|+.-..-......   ..+...+.++.++.||+.+.               
T Consensus        67 v~~~~vy~~~~~---g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---------------  128 (394)
T PRK11138         67 VAYNKVYAADRA---GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---------------  128 (394)
T ss_pred             EECCEEEEECCC---CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------------
Confidence            356677776653   2478999865  458653111100000   00222345667889997543               


Q ss_pred             CCeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCC
Q 014650          144 SDSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDE  218 (421)
Q Consensus       144 ~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~  218 (421)
                      ...++.+|..|.+  |+.-.+  .+ ...+-++.+  +.+|+..+.             ..+..+|+++++  |+.-..
T Consensus       129 ~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~--~~v~v~~~~-------------g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        129 KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSD--GLVLVHTSN-------------GMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CCEEEEEECCCCCCcccccCC--Cc-eecCCEEEC--CEEEEECCC-------------CEEEEEEccCCCEeeeecCC
Confidence            2468999987754  875322  11 112223446  888875442             258899999876  886433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.96  E-value=0.04  Score=50.45  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=37.4

Q ss_pred             CCCCh----HHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           21 IPGLP----NDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        21 ~~~Lp----~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      +..||    +++.++||+.|...++.....|||+|+.++..+.+.+
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            45688    9999999999999999999999999999999886543

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.95  E-value=0.02  Score=54.38  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCC
Q 014650          119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       119 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  198 (421)
                      .+++|+.++..               ..+.+||+.|..-..+|.|..+.....++.++  ++||++........  ....
T Consensus        75 ~gskIv~~d~~---------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG--~~LY~m~~~~~~~~--~~~~  135 (342)
T PF07893_consen   75 HGSKIVAVDQS---------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVG--DKLYAMDRSPFPEP--AGRP  135 (342)
T ss_pred             cCCeEEEEcCC---------------CCeEEEECCCCeEeccCCCCCCCcceEEEEeC--CeEEEeeccCcccc--ccCc
Confidence            48899998663               23889999999999899988887777888889  88999987642200  0000


Q ss_pred             ccceEEEE--EC--------CCCceEECCCCCCCCCC------eeEEEEccCCeEEE
Q 014650          199 RISSVERY--DV--------AKNEWVSMDEMPRFRAG------CVGFVAEESGEFWV  239 (421)
Q Consensus       199 ~~~~~~~y--d~--------~t~~W~~~~~~~~~r~~------~~~~~~~~~~~iyv  239 (421)
                      .....|.+  ++        ..-.|+.+|+.|..+..      ..+-++.++..|+|
T Consensus       136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~v  192 (342)
T PF07893_consen  136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFV  192 (342)
T ss_pred             cceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEE
Confidence            00145544  42        22358889887765543      22333333377887

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00093  Score=60.05  Aligned_cols=51  Identities=14%  Similarity=0.251  Sum_probs=43.2

Q ss_pred             cccccCccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650           11 LVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV   61 (421)
Q Consensus        11 ~~~~~~~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~   61 (421)
                      ...+..+..-|-+||||+++.||++|+.+.+.++..|||||..+..+..+.
T Consensus        88 ~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW  138 (419)
T KOG2120|consen   88 LNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW  138 (419)
T ss_pred             hhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence            334445556688999999999999999999999999999999998877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.80  E-value=0.54  Score=45.34  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCC--cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANR--ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      +..+|+.+.+   ..++++|+.+.  .|+.-  ++..      ...+.+..++.+|+..+               ...++
T Consensus       105 ~~~v~v~~~~---g~l~ald~~tG~~~W~~~--~~~~------~~~~p~v~~~~v~v~~~---------------~g~l~  158 (377)
T TIGR03300       105 GGLVFVGTEK---GEVIALDAEDGKELWRAK--LSSE------VLSPPLVANGLVVVRTN---------------DGRLT  158 (377)
T ss_pred             CCEEEEEcCC---CEEEEEECCCCcEeeeec--cCce------eecCCEEECCEEEEECC---------------CCeEE
Confidence            4455554432   34788887654  46543  2211      11223345677776543               23588


Q ss_pred             EEeCccCc--eeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650          149 RFNFLTFS--WERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVS  215 (421)
Q Consensus       149 ~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~  215 (421)
                      .+|+.+.+  |+.-...+.  .+...+.++.+  +.+|+ |..+            ..+..+|+++++  |+.
T Consensus       159 a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~--~~v~~-~~~~------------g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       159 ALDAATGERLWTYSRVTPALTLRGSASPVIAD--GGVLV-GFAG------------GKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEEcCCCceeeEEccCCCceeecCCCCCEEEC--CEEEE-ECCC------------CEEEEEEccCCCEeeee
Confidence            89987654  775332221  12223334455  65554 3321            247788988764  864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=96.77  E-value=0.068  Score=47.80  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             ccccCCCccceEEEEEccC--CEEEEEcCCcccc-------ccCCCCCccceEEEEECCCCceE--ECCCCCCCCCCeeE
Q 014650          160 IAPMISPRGSFACAAVRSL--NQIIVAGGGSRHS-------LFGAAGSRISSVERYDVAKNEWV--SMDEMPRFRAGCVG  228 (421)
Q Consensus       160 ~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~-------~~~~~~~~~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~  228 (421)
                      +.++|.+|++|++.++.+.  .-..++||...-.       .|..--.....|+..|++-+-.+  .++.+......|.+
T Consensus        81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs  160 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS  160 (337)
T ss_pred             cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence            4688999999999888542  2467788865321       01111122334666777766554  35666666665655


Q ss_pred             EEEccCCeEEEEeccCCC
Q 014650          229 FVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       229 ~~~~~~~~iyv~GG~~~~  246 (421)
                      ++-.  +.+|++||..-.
T Consensus       161 lar~--D~VYilGGHsl~  176 (337)
T PF03089_consen  161 LARN--DCVYILGGHSLE  176 (337)
T ss_pred             EecC--ceEEEEccEEcc
Confidence            5443  899999997543

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.45  E-value=0.095  Score=49.82  Aligned_cols=123  Identities=20%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      .+..|+...+.   .....||+.+..-..+|.|+.+     ...-.++.++++||++.........   .. .....++.
T Consensus        75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~p-----k~~pisv~VG~~LY~m~~~~~~~~~---~~-~~~~~FE~  142 (342)
T PF07893_consen   75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSP-----KRCPISVSVGDKLYAMDRSPFPEPA---GR-PDFPCFEA  142 (342)
T ss_pred             cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCC-----CcceEEEEeCCeEEEeeccCccccc---cC-ccceeEEE
Confidence            34555555443   3378999999988888887765     2333455668889999986432210   00 00003333


Q ss_pred             --Ee--------CccCceeeccccCCCccc-------eEEEEE-ccCCEEEE-EcCCccccccCCCCCccceEEEEECCC
Q 014650          150 --FN--------FLTFSWERIAPMISPRGS-------FACAAV-RSLNQIIV-AGGGSRHSLFGAAGSRISSVERYDVAK  210 (421)
Q Consensus       150 --yd--------~~t~~W~~~~~~~~~r~~-------~~~~~~-~~~~~iyv-~GG~~~~~~~~~~~~~~~~~~~yd~~t  210 (421)
                        |+        ...-.|+.+|+.|..+..       .+.+++ +  ..|+| +-|..            ..++.||.++
T Consensus       143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g--~~I~vS~~~~~------------~GTysfDt~~  208 (342)
T PF07893_consen  143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDG--RTIFVSVNGRR------------WGTYSFDTES  208 (342)
T ss_pred             eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecC--CeEEEEecCCc------------eEEEEEEcCC
Confidence              44        233468898876654322       234445 4  67877 33321            3489999999


Q ss_pred             CceEECCC
Q 014650          211 NEWVSMDE  218 (421)
Q Consensus       211 ~~W~~~~~  218 (421)
                      .+|+..++
T Consensus       209 ~~W~~~Gd  216 (342)
T PF07893_consen  209 HEWRKHGD  216 (342)
T ss_pred             cceeeccc
Confidence            99999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.29  E-value=1.2  Score=43.04  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             ccEEEeCCCC--cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccC--ceeec
Q 014650           85 SPFLFDAANR--ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTF--SWERI  160 (421)
Q Consensus        85 ~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~  160 (421)
                      .++++|+.+.  .|+.-...+..   ..+...+.+..++.+| +|..              ...+..+|+.+.  .|+.-
T Consensus       156 ~l~a~d~~tG~~~W~~~~~~~~~---~~~~~~sp~~~~~~v~-~~~~--------------~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       156 RLTALDAATGERLWTYSRVTPAL---TLRGSASPVIADGGVL-VGFA--------------GGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             eEEEEEcCCCceeeEEccCCCce---eecCCCCCEEECCEEE-EECC--------------CCEEEEEEccCCCEeeeec
Confidence            4789998764  47653222110   0122233445566655 4332              235888888765  47643


Q ss_pred             cccCCCc--------cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCCCCCCeeEEE
Q 014650          161 APMISPR--------GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       161 ~~~~~~r--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~  230 (421)
                      ...+...        .....++.+  +.+|+.+..             ..+.+||+++.+  |+.-.  .    .....+
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~~~--~~vy~~~~~-------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~  276 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVVDG--GQVYAVSYQ-------------GRVAALDLRSGRVLWKRDA--S----SYQGPA  276 (377)
T ss_pred             cccCCCCCchhhhhccCCccEEEC--CEEEEEEcC-------------CEEEEEECCCCcEEEeecc--C----CccCce
Confidence            2222111        112233445  788876532             248889998765  86531  1    112233


Q ss_pred             EccCCeEEEEe
Q 014650          231 AEESGEFWVMG  241 (421)
Q Consensus       231 ~~~~~~iyv~G  241 (421)
                      +.+ ++||+..
T Consensus       277 ~~~-~~vyv~~  286 (377)
T TIGR03300       277 VDD-NRLYVTD  286 (377)
T ss_pred             EeC-CEEEEEC
Confidence            444 7888864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.05  E-value=0.99  Score=40.07  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      .++.+|+...   ...++++|+.+.+  |+.-  ++.+      .....+..++.||+..+.               +.+
T Consensus        35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~--~~~~------~~~~~~~~~~~v~v~~~~---------------~~l   88 (238)
T PF13360_consen   35 DGGRVYVASG---DGNLYALDAKTGKVLWRFD--LPGP------ISGAPVVDGGRVYVGTSD---------------GSL   88 (238)
T ss_dssp             ETTEEEEEET---TSEEEEEETTTSEEEEEEE--CSSC------GGSGEEEETTEEEEEETT---------------SEE
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEee--cccc------ccceeeecccccccccce---------------eee
Confidence            5666777633   3458999987655  5543  3322      222246778999888742               368


Q ss_pred             EEEeCccCc--ee-eccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCC
Q 014650          148 FRFNFLTFS--WE-RIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMP  220 (421)
Q Consensus       148 ~~yd~~t~~--W~-~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~  220 (421)
                      +.+|..+.+  |+ .....+.  .+......+.+  +.+|+...             ...+..+|+++++  |+.-...+
T Consensus        89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTS-------------SGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEEEET-------------CSEEEEEETTTTEEEEEEESSTT
T ss_pred             EecccCCcceeeeeccccccccccccccCceEec--CEEEEEec-------------cCcEEEEecCCCcEEEEeecCCC
Confidence            999976655  88 3433222  23334445556  77777653             2348899999876  87643433


Q ss_pred             CCCCC-------eeEEEEccCCeEEEEecc
Q 014650          221 RFRAG-------CVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       221 ~~r~~-------~~~~~~~~~~~iyv~GG~  243 (421)
                      .....       ....+..+ +.+|+..+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  182 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISD-GRVYVSSGD  182 (238)
T ss_dssp             -SS--EEEETTEEEEEECCT-TEEEEECCT
T ss_pred             CCCcceeeecccccceEEEC-CEEEEEcCC
Confidence            21111       12333344 788887654

...

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=95.78  E-value=0.75  Score=41.37  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCCCcceEEEEe----CCEEEEEcccccCCCCCCCC------CCCCCCeEEEEeCccCcee--eccccCCCc
Q 014650          100 PPLPCNPSTYSLCNFTSISL----GPYIYLLGGSHFDARSFPLD------RPLPSDSAFRFNFLTFSWE--RIAPMISPR  167 (421)
Q Consensus       100 ~~l~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~------~~~~~~~v~~yd~~t~~W~--~~~~~~~~r  167 (421)
                      ..+|.+     |++|++.++    +.-+.+|||...-... ...      .......|+..|+.-...+  .++.+..+.
T Consensus        82 GdvP~a-----RYGHt~~vV~SrGKta~VlFGGRSY~P~~-qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~  155 (337)
T PF03089_consen   82 GDVPEA-----RYGHTINVVHSRGKTACVLFGGRSYMPPG-QRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQ  155 (337)
T ss_pred             CCCCcc-----cccceEEEEEECCcEEEEEECCcccCCcc-ccchhhcceeccCCCeEEEEeccccccccccchhhcCCe
Confidence            456654     999998766    2348889997642100 000      0112335777777665543  567777888


Q ss_pred             cceEEEEEccCCEEEEEcCCc
Q 014650          168 GSFACAAVRSLNQIIVAGGGS  188 (421)
Q Consensus       168 ~~~~~~~~~~~~~iyv~GG~~  188 (421)
                      +.|.+.+-+  +.+|++||..
T Consensus       156 SFHvslar~--D~VYilGGHs  174 (337)
T PF03089_consen  156 SFHVSLARN--DCVYILGGHS  174 (337)
T ss_pred             EEEEEEecC--ceEEEEccEE
Confidence            888888877  9999999975

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.44  E-value=0.42  Score=43.83  Aligned_cols=110  Identities=13%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      -..++.||+.+.+|..+..--.     + .-.++... ++.||+.|-....+.        ....+-.||..+.+|..++
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~-----G-~V~~l~~~~~~~Llv~G~ft~~~~--------~~~~la~yd~~~~~w~~~~   80 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGIS-----G-TVTDLQWASNNQLLVGGNFTLNGT--------NSSNLATYDFKNQTWSSLG   80 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCce-----E-EEEEEEEecCCEEEEEEeeEECCC--------CceeEEEEecCCCeeeecC
Confidence            3457899999999998744311     1 11233333 788888887654431        3456889999999998876


Q ss_pred             c-----cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          162 P-----MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       162 ~-----~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      .     +|.+.........+. +.+++.|...         .-...+..|  .-.+|+.+..
T Consensus        81 ~~~s~~ipgpv~a~~~~~~d~-~~~~~aG~~~---------~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   81 GGSSNSIPGPVTALTFISNDG-SNFWVAGRSA---------NGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CcccccCCCcEEEEEeeccCC-ceEEEeceec---------CCCceEEEE--cCCceEeccc
Confidence            6     344432222222231 4677776642         113345566  4557988765

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.22  E-value=0.16  Score=46.63  Aligned_cols=92  Identities=22%  Similarity=0.408  Sum_probs=57.6

Q ss_pred             CCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC----
Q 014650          143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE----  218 (421)
Q Consensus       143 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~----  218 (421)
                      ....+..||+.+.+|..+..=..+.. ..+...++ +++|+.|-...      .......+-.||.++.+|+.++.    
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~-~~Llv~G~ft~------~~~~~~~la~yd~~~~~w~~~~~~~s~   85 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASN-NQLLVGGNFTL------NGTNSSNLATYDFKNQTWSSLGGGSSN   85 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecC-CEEEEEEeeEE------CCCCceeEEEEecCCCeeeecCCcccc
Confidence            35678999999999998865432221 22333332 78888886542      22246678899999999988765    


Q ss_pred             -CCCCCCCeeEEEEccCCeEEEEecc
Q 014650          219 -MPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       219 -~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                       +|.|... ..+...+.+.+++.|..
T Consensus        86 ~ipgpv~a-~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   86 SIPGPVTA-LTFISNDGSNFWVAGRS  110 (281)
T ss_pred             cCCCcEEE-EEeeccCCceEEEecee
Confidence             3444321 12222333678888775

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.39  E-value=2.2  Score=41.00  Aligned_cols=99  Identities=10%  Similarity=0.096  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccce-EEEEEccCCE-EEEEcCCccccccCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF-ACAAVRSLNQ-IIVAGGGSRHSLFGAAG  197 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~~~~~-iyv~GG~~~~~~~~~~~  197 (421)
                      .-.|.+++|.+.            +-.++..|-.+|.  .+.++-..++-- +++...+ |. ..+.+|.          
T Consensus       224 ~~plllvaG~d~------------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~r----------  278 (514)
T KOG2055|consen  224 TAPLLLVAGLDG------------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPN-GHSVIFTSGR----------  278 (514)
T ss_pred             CCceEEEecCCC------------cEEEEEecCccCh--hheeeeeccCccceeeecCC-CceEEEeccc----------
Confidence            456888888742            3457777888777  444443322221 1222211 54 6666664          


Q ss_pred             CccceEEEEECCCCceEECCCCC--CCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          198 SRISSVERYDVAKNEWVSMDEMP--RFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       198 ~~~~~~~~yd~~t~~W~~~~~~~--~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                        ..-++.||.++.+-+.+.++-  ..+....=-+..+ +.+.++.|.++.
T Consensus       279 --rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~  326 (514)
T KOG2055|consen  279 --RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGH  326 (514)
T ss_pred             --ceEEEEeeccccccccccCCCCcccchhheeEecCC-CCeEEEcccCce
Confidence              234889999999888776542  1111111112222 567777776664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.29  E-value=3.8  Score=36.73  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+..-              ....++++|+.+.+-..+.. +.   ..+++....++.+|+.....           
T Consensus        11 ~g~l~~~D~--------------~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~~~-----------   61 (246)
T PF08450_consen   11 DGRLYWVDI--------------PGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADSGG-----------   61 (246)
T ss_dssp             TTEEEEEET--------------TTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEETTC-----------
T ss_pred             CCEEEEEEc--------------CCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEcCc-----------
Confidence            577887743              24679999999987654332 22   33444441228898886642           


Q ss_pred             cceEEEEECCCCceEECCCCCC---CCCCeeEEEEccCCeEEEEe
Q 014650          200 ISSVERYDVAKNEWVSMDEMPR---FRAGCVGFVAEESGEFWVMG  241 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~---~r~~~~~~~~~~~~~iyv~G  241 (421)
                         ..++|+.+++++.+...+.   +....--+++..+|.||+-.
T Consensus        62 ---~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~  103 (246)
T PF08450_consen   62 ---IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD  103 (246)
T ss_dssp             ---EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred             ---eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence               4566999999988765531   22222234444448888864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=93.67  E-value=6.3  Score=37.07  Aligned_cols=111  Identities=7%  Similarity=-0.025  Sum_probs=53.8

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCC-CCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAA-NRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~-~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      ....+.+|+.+..  ...+..|+.. ..++..+...+.+     -..+.++..  ++.||+..-.              .
T Consensus        43 spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~~~-----~~p~~i~~~~~g~~l~v~~~~--------------~  101 (330)
T PRK11028         43 SPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESPLP-----GSPTHISTDHQGRFLFSASYN--------------A  101 (330)
T ss_pred             CCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeecCC-----CCceEEEECCCCCEEEEEEcC--------------C
Confidence            3456777776542  2446566664 4556554433322     111223322  4567766431              2


Q ss_pred             CeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          145 DSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       145 ~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      +.+.+||..++.  .+.+..++.....|.++...+...+|+..-.            .+.+.+||..+.
T Consensus       102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~  158 (330)
T PRK11028        102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDD  158 (330)
T ss_pred             CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCC
Confidence            457777765432  1222222222333454443221466665432            346888998763

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.32  E-value=0.031  Score=50.75  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             CCCChHHHHHHHhcCCC-----cchhHHHHhhhHhHHhhhcCCccccccc
Q 014650           21 IPGLPNDVASLILAFVP-----YSHQSRLKQTCRSWFLFFSSRTLVFDRH   65 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp-----~~~~~~~~~v~k~W~~l~~~~~~~~~~~   65 (421)
                      +..|||||+.+||.++-     ..++.++.+|||.|.....++++.+.-.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            57899999999998764     4789999999999999999999876544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.95  E-value=6.6  Score=35.18  Aligned_cols=125  Identities=15%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec
Q 014650           83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI  160 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~  160 (421)
                      ...++.+|+.+.+-..+ ..+.        ..+++..  ++.+|+....                .+.++|+.+.+++.+
T Consensus        21 ~~~i~~~~~~~~~~~~~-~~~~--------~~G~~~~~~~g~l~v~~~~----------------~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEVI-DLPG--------PNGMAFDRPDGRLYVADSG----------------GIAVVDPDTGKVTVL   75 (246)
T ss_dssp             TTEEEEEETTTTEEEEE-ESSS--------EEEEEEECTTSEEEEEETT----------------CEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCeEEEE-ecCC--------CceEEEEccCCEEEEEEcC----------------ceEEEecCCCcEEEE
Confidence            34688999998876543 2221        2334443  6888887652                356669999999988


Q ss_pred             cccCC---CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-CCCCCCCCeeEEEEc-cCC
Q 014650          161 APMIS---PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-EMPRFRAGCVGFVAE-ESG  235 (421)
Q Consensus       161 ~~~~~---~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~-~~~  235 (421)
                      ...+.   +....--.+++.+|.||+-.-....    ........++++++. .+.+.+. .+..|    -++++. +++
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~----~~~~~~g~v~~~~~~-~~~~~~~~~~~~p----NGi~~s~dg~  146 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG----ASGIDPGSVYRIDPD-GKVTVVADGLGFP----NGIAFSPDGK  146 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC----TTCGGSEEEEEEETT-SEEEEEEEEESSE----EEEEEETTSS
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCc----cccccccceEEECCC-CeEEEEecCcccc----cceEECCcch
Confidence            77632   2233333333333888886432110    011111678999999 6655442 22222    233333 224


Q ss_pred             eEEEEe
Q 014650          236 EFWVMG  241 (421)
Q Consensus       236 ~iyv~G  241 (421)
                      .||+.-
T Consensus       147 ~lyv~d  152 (246)
T PF08450_consen  147 TLYVAD  152 (246)
T ss_dssp             EEEEEE
T ss_pred             heeecc
Confidence            677754

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.80  E-value=7.4  Score=35.40  Aligned_cols=92  Identities=14%  Similarity=0.054  Sum_probs=47.3

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE-e-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceee-cc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS-L-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWER-IA  161 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~-~~  161 (421)
                      .+..||+.+++-...-....      .. .+++. - +..+|+.++.              ...+.+||..+.+... ++
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~------~~-~~l~~~~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~~~~   70 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQ------RP-RGITLSKDGKLLYVCASD--------------SDTIQVIDLATGEVIGTLP   70 (300)
T ss_pred             EEEEEECCCCceEEEEECCC------CC-CceEECCCCCEEEEEECC--------------CCeEEEEECCCCcEEEecc
Confidence            57888987766433212111      11 12222 2 3457777653              2468899998876543 22


Q ss_pred             ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      ....+   ..++...+++.+|+.++.+            ..+.+||..+.+
T Consensus        71 ~~~~~---~~~~~~~~g~~l~~~~~~~------------~~l~~~d~~~~~  106 (300)
T TIGR03866        71 SGPDP---ELFALHPNGKILYIANEDD------------NLVTVIDIETRK  106 (300)
T ss_pred             CCCCc---cEEEECCCCCEEEEEcCCC------------CeEEEEECCCCe
Confidence            21111   2222222214566665432            258889988764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.28  E-value=1.6  Score=39.30  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ....+|-..|.-..+.+..+|+.+++-....++|..     ..+-+++..+++||..-=.              ....++
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----~FgEGit~~~d~l~qLTWk--------------~~~~f~  114 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----YFGEGITILGDKLYQLTWK--------------EGTGFV  114 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESS--------------SSEEEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----ccceeEEEECCEEEEEEec--------------CCeEEE
Confidence            344555555543445688999999988776677754     4677889999999998653              457899


Q ss_pred             EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      ||+.+  .+.+..++.+.-+.+++..+  ..+|+..|.             +.+..+||++-
T Consensus       115 yd~~t--l~~~~~~~y~~EGWGLt~dg--~~Li~SDGS-------------~~L~~~dP~~f  159 (264)
T PF05096_consen  115 YDPNT--LKKIGTFPYPGEGWGLTSDG--KRLIMSDGS-------------SRLYFLDPETF  159 (264)
T ss_dssp             EETTT--TEEEEEEE-SSS--EEEECS--SCEEEE-SS-------------SEEEEE-TTT-
T ss_pred             Ecccc--ceEEEEEecCCcceEEEcCC--CEEEEECCc-------------cceEEECCccc
Confidence            99976  55666666677888999877  889988884             35777888763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.18  E-value=8.9  Score=34.86  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ..+.+|+.+..  ...+..||..+.+....  ++...   .........-++.+|+.++.              ...+..
T Consensus        41 dg~~l~~~~~~--~~~v~~~d~~~~~~~~~--~~~~~---~~~~~~~~~~g~~l~~~~~~--------------~~~l~~   99 (300)
T TIGR03866        41 DGKLLYVCASD--SDTIQVIDLATGEVIGT--LPSGP---DPELFALHPNGKILYIANED--------------DNLVTV   99 (300)
T ss_pred             CCCEEEEEECC--CCeEEEEECCCCcEEEe--ccCCC---CccEEEECCCCCEEEEEcCC--------------CCeEEE
Confidence            34556555442  34577899888766442  22110   01111111124567766542              246888


Q ss_pred             EeCccCc
Q 014650          150 FNFLTFS  156 (421)
Q Consensus       150 yd~~t~~  156 (421)
                      ||..+.+
T Consensus       100 ~d~~~~~  106 (300)
T TIGR03866       100 IDIETRK  106 (300)
T ss_pred             EECCCCe
Confidence            9988754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.22  E-value=2.1  Score=38.58  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             CCCCCCCCe-eEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc
Q 014650          218 EMPRFRAGC-VGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER  296 (421)
Q Consensus       218 ~~~~~r~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~  296 (421)
                      ..|+....+ .+..+.+++.||.--|..+...             +..||+.++            +=.....++.   +
T Consensus        38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~-------------l~~~d~~tg------------~~~~~~~l~~---~   89 (264)
T PF05096_consen   38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSS-------------LRKVDLETG------------KVLQSVPLPP---R   89 (264)
T ss_dssp             EEE--TT-EEEEEEEEETTEEEEEECSTTEEE-------------EEEEETTTS------------SEEEEEE-TT---T
T ss_pred             ECCCCCcccCccEEecCCCEEEEeCCCCCcEE-------------EEEEECCCC------------cEEEEEECCc---c
Confidence            334333333 3455523489999988776542             334555554            6555444542   2


Q ss_pred             cccCeEEEEccccCCCceEEEec--CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeec
Q 014650          297 SRIGKIVVMEDENRGRPEVFMLD--KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLK  365 (421)
Q Consensus       297 ~~~g~i~v~GG~~~g~~~~~~~~--~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~  365 (421)
                      ....-+.++|+.      +|.+.  ....++||+.+  .+.+...+.   ...+.+++..++.|++-.|.+
T Consensus        90 ~FgEGit~~~d~------l~qLTWk~~~~f~yd~~t--l~~~~~~~y---~~EGWGLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen   90 YFGEGITILGDK------LYQLTWKEGTGFVYDPNT--LKKIGTFPY---PGEGWGLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             --EEEEEEETTE------EEEEESSSSEEEEEETTT--TEEEEEEE----SSS--EEEECSSCEEEE-SSS
T ss_pred             ccceeEEEECCE------EEEEEecCCeEEEEcccc--ceEEEEEec---CCcceEEEcCCCEEEEECCcc
Confidence            222245666665      66553  46789999875  777776655   347889998888999888843

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.59  E-value=16  Score=34.67  Aligned_cols=80  Identities=13%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEE-EECCCCceEECCCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVER-YDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~r~  224 (421)
                      .+++=+-.-++|+.+...... .-+.+....  +..|++.|..        +.    +.. .|....+|+.+.. +..+.
T Consensus       153 ~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~--~g~~v~~g~~--------G~----i~~s~~~gg~tW~~~~~-~~~~~  216 (334)
T PRK13684        153 AIYRTTDGGKNWEALVEDAAG-VVRNLRRSP--DGKYVAVSSR--------GN----FYSTWEPGQTAWTPHQR-NSSRR  216 (334)
T ss_pred             eEEEECCCCCCceeCcCCCcc-eEEEEEECC--CCeEEEEeCC--------ce----EEEEcCCCCCeEEEeeC-CCccc
Confidence            466666677899988653322 334444444  4444444432        11    222 2444567988754 22222


Q ss_pred             CeeEEEEccCCeEEEEec
Q 014650          225 GCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG  242 (421)
                       ..++....++.++++|.
T Consensus       217 -l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        217 -LQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             -ceeeeEcCCCCEEEEec
Confidence             22333333378888764

>cd00094 HX Hemopexin-like repeats

Probab=90.45  E-value=11  Score=32.56  Aligned_cols=18  Identities=11%  Similarity=0.228  Sum_probs=12.8

Q ss_pred             EEEecCCceEEEeCCCCc
Q 014650          315 VFMLDKFDILRYDMGLNR  332 (421)
Q Consensus       315 ~~~~~~~~v~~yd~~~~~  332 (421)
                      .|.......++||..+++
T Consensus       161 ~yfF~g~~y~~~d~~~~~  178 (194)
T cd00094         161 YYFFKGDQYWRFDPRSKE  178 (194)
T ss_pred             EEEEECCEEEEEeCccce
Confidence            444455688999988766

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.79  E-value=29  Score=35.21  Aligned_cols=71  Identities=8%  Similarity=0.147  Sum_probs=42.9

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCC--------ccceEEEEEccCCEEEEE
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISP--------RGSFACAAVRSLNQIIVA  184 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv~  184 (421)
                      +.++.++.||+....               ..++.+|..|.+  |+.-...+..        ....+.++.+  ++||+.
T Consensus        64 tPvv~~g~vyv~s~~---------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~--~~v~v~  126 (527)
T TIGR03075        64 QPLVVDGVMYVTTSY---------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD--GKVFFG  126 (527)
T ss_pred             CCEEECCEEEEECCC---------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC--CEEEEE
Confidence            345668999986542               357888877644  7754332211        1122345566  888875


Q ss_pred             cCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650          185 GGGSRHSLFGAAGSRISSVERYDVAKNE--WVS  215 (421)
Q Consensus       185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~  215 (421)
                      ..             -..+..+|.+|.+  |+.
T Consensus       127 t~-------------dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075       127 TL-------------DARLVALDAKTGKVVWSK  146 (527)
T ss_pred             cC-------------CCEEEEEECCCCCEEeec
Confidence            33             1248899999886  875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=88.60  E-value=27  Score=34.60  Aligned_cols=106  Identities=12%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ...++.+|..+++-..+...+..     ........-++.|++....  +          ...++|.+|..+.+.+++..
T Consensus       241 ~~~L~~~dl~tg~~~~lt~~~g~-----~~~~~wSPDG~~La~~~~~--~----------g~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVTSFPGI-----NGAPRFSPDGKKLALVLSK--D----------GQPEIYVVDIATKALTRITR  303 (448)
T ss_pred             CcEEEEEECCCCCeEEecCCCCC-----cCCeeECCCCCEEEEEEeC--C----------CCeEEEEEECCCCCeEECcc
Confidence            34688899888877777655421     1111222224556655432  1          13579999999988887765


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD  217 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~  217 (421)
                      -...-...+...-+  ..|++.....        +  ...++.+|..+++++.+.
T Consensus       304 ~~~~~~~p~wSpDG--~~I~f~s~~~--------g--~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        304 HRAIDTEPSWHPDG--KSLIFTSERG--------G--KPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             CCCCccceEECCCC--CEEEEEECCC--------C--CceEEEEECCCCCEEEEe
Confidence            32111112111112  4555543321        1  246889999999888764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.57  E-value=23  Score=33.69  Aligned_cols=144  Identities=12%  Similarity=0.126  Sum_probs=67.3

Q ss_pred             cCCceEEEeCCCC-CCCccEEE--eCCCCcEEECCCCCCCCCCCCCcceEEEE--eCCEEEEEcccccCCCCCCCCCCCC
Q 014650           69 SQSDLLCIFPQDP-SISSPFLF--DAANRACRPLPPLPCNPSTYSLCNFTSIS--LGPYIYLLGGSHFDARSFPLDRPLP  143 (421)
Q Consensus        69 ~~~~~~~~~g~~~-~~~~~~~~--d~~~~~W~~l~~l~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~  143 (421)
                      ...+.+|+..... ....+..|  ++.+.+.+.+...+..    +...+.++.  -+..||+.--.              
T Consensus        46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~----g~~p~~i~~~~~g~~l~vany~--------------  107 (345)
T PF10282_consen   46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG----GSSPCHIAVDPDGRFLYVANYG--------------  107 (345)
T ss_dssp             TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES----SSCEEEEEECTTSSEEEEEETT--------------
T ss_pred             eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC----CCCcEEEEEecCCCEEEEEEcc--------------
Confidence            4678888876642 33344444  5555677766554421    122233333  25667765321              


Q ss_pred             CCeEEEEeCccCc-eeecc---------cc--CCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC
Q 014650          144 SDSAFRFNFLTFS-WERIA---------PM--ISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK  210 (421)
Q Consensus       144 ~~~v~~yd~~t~~-W~~~~---------~~--~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t  210 (421)
                      ...+.+|+...+- -....         +-  ... -..|.+....++..+||..=.            ...+.+|+...
T Consensus       108 ~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~  175 (345)
T PF10282_consen  108 GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDD  175 (345)
T ss_dssp             TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-T
T ss_pred             CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeC
Confidence            2457777765531 11110         11  111 223444444321467776321            34577777766


Q ss_pred             Cc--eEE-----CCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          211 NE--WVS-----MDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       211 ~~--W~~-----~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ..  .+.     ++.-..||  |..+. .+...+||+.-..+
T Consensus       176 ~~~~l~~~~~~~~~~G~GPR--h~~f~-pdg~~~Yv~~e~s~  214 (345)
T PF10282_consen  176 DTGKLTPVDSIKVPPGSGPR--HLAFS-PDGKYAYVVNELSN  214 (345)
T ss_dssp             TS-TEEEEEEEECSTTSSEE--EEEE--TTSSEEEEEETTTT
T ss_pred             CCceEEEeeccccccCCCCc--EEEEc-CCcCEEEEecCCCC
Confidence            55  544     22323344  33333 23367899875433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=87.02  E-value=9.8  Score=36.74  Aligned_cols=97  Identities=13%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI  164 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~  164 (421)
                      -++.||..+.+-.++.++-.-+ ......|.++-.++.|.+.|-               ...+...-..|+.|..--.++
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~---------------~G~I~lLhakT~eli~s~Kie  344 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGN---------------NGHIHLLHAKTKELITSFKIE  344 (514)
T ss_pred             EEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEccc---------------CceEEeehhhhhhhhheeeec
Confidence            3789999999988886654321 011234555555665555443               234677777787776544444


Q ss_pred             CCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       165 ~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      .-...++...-+  ..|+++||..             .|+++|..++.
T Consensus       345 G~v~~~~fsSds--k~l~~~~~~G-------------eV~v~nl~~~~  377 (514)
T KOG2055|consen  345 GVVSDFTFSSDS--KELLASGGTG-------------EVYVWNLRQNS  377 (514)
T ss_pred             cEEeeEEEecCC--cEEEEEcCCc-------------eEEEEecCCcc
Confidence            444445555444  6788888842             58999999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.27  E-value=41  Score=34.18  Aligned_cols=45  Identities=20%  Similarity=0.467  Sum_probs=39.0

Q ss_pred             cccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           18 VTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        18 ~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      .-.+..||.++...+|..|+...+...+++|+.|+.+........
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            344788999999999999999999999999999999987765433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=84.60  E-value=42  Score=32.87  Aligned_cols=106  Identities=5%  Similarity=-0.037  Sum_probs=57.9

Q ss_pred             CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ...++.+|..+++-+.+...+..     -.......-+++|++....  +          ...++|++|..+.+.+++..
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g~-----~~~~~~SpDG~~la~~~~~--~----------g~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEGL-----NGAPAWSPDGSKLAFVLSK--D----------GNPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCCC-----cCCeEECCCCCEEEEEEcc--C----------CCceEEEEECCCCCeEEccc
Confidence            34688899988887777554421     0111111123455543321  1          12579999999998887764


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD  217 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~  217 (421)
                      ....-..+....-+  ..|++.....          ....++.+|..+++++.+.
T Consensus       285 ~~~~~~~~~~spDg--~~i~f~s~~~----------g~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        285 HPAIDTEPFWGKDG--RTLYFTSDRG----------GKPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             CCCCcCCeEECCCC--CEEEEEECCC----------CCceEEEEECCCCCEEEee
Confidence            33221112211122  4566553321          1246888999888887764

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=83.88  E-value=14  Score=29.38  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEE-eCCcceeeEe
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIY-HPRKKTWRYI  399 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~~W~~i  399 (421)
                      ..|..||..+++|+.+..............++.++|+|-++.-.....            ...-+||+. |.++++|.+.
T Consensus        20 ~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~------------~~~~~iWvLeD~~k~~Wsk~   87 (129)
T PF08268_consen   20 NVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE------------PDSIDIWVLEDYEKQEWSKK   87 (129)
T ss_pred             cEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC------------cceEEEEEeeccccceEEEE
Confidence            678999999999998854212222445677889999999987543221            122478887 5778899887


Q ss_pred             cc-cCC
Q 014650          400 FT-KPP  404 (421)
Q Consensus       400 ~~-~p~  404 (421)
                      .. +|.
T Consensus        88 ~~~lp~   93 (129)
T PF08268_consen   88 HIVLPP   93 (129)
T ss_pred             EEECCh
Confidence            54 443

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.85  E-value=45  Score=32.56  Aligned_cols=124  Identities=14%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             cEEEeCCCCcEEE-CCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc-eeeccc
Q 014650           86 PFLFDAANRACRP-LPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS-WERIAP  162 (421)
Q Consensus        86 ~~~~d~~~~~W~~-l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~~~  162 (421)
                      +..|+..+..=.+ +..       |.+.-+++... +|+|+.+|+.              +..|.+||..+.. -+.+..
T Consensus        50 vqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~--------------sG~V~vfD~k~r~iLR~~~a  108 (487)
T KOG0310|consen   50 VQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDE--------------SGHVKVFDMKSRVILRQLYA  108 (487)
T ss_pred             EEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCC--------------cCcEEEeccccHHHHHHHhh
Confidence            5677766543222 111       22333344333 7999999985              4568999944421 222222


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCC-CCC-CeeEEEEccCCeEEEE
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPR-FRA-GCVGFVAEESGEFWVM  240 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~-~~~~~~~~~~~~iyv~  240 (421)
                      -..|-..-..+..+  +.+++.|+-+.            .+..+|..+..= +. .+.. .-+ .+..+.-.+ +.|.+.
T Consensus       109 h~apv~~~~f~~~d--~t~l~s~sDd~------------v~k~~d~s~a~v-~~-~l~~htDYVR~g~~~~~~-~hivvt  171 (487)
T KOG0310|consen  109 HQAPVHVTKFSPQD--NTMLVSGSDDK------------VVKYWDLSTAYV-QA-ELSGHTDYVRCGDISPAN-DHIVVT  171 (487)
T ss_pred             ccCceeEEEecccC--CeEEEecCCCc------------eEEEEEcCCcEE-EE-EecCCcceeEeeccccCC-CeEEEe
Confidence            22222222233455  88888888431            133445444442 11 1111 111 122333333 889999


Q ss_pred             eccCCCc
Q 014650          241 GGYGDSR  247 (421)
Q Consensus       241 GG~~~~~  247 (421)
                      |||++..
T Consensus       172 GsYDg~v  178 (487)
T KOG0310|consen  172 GSYDGKV  178 (487)
T ss_pred             cCCCceE
Confidence            9998864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=83.58  E-value=30  Score=30.37  Aligned_cols=84  Identities=12%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CeEEEEeCccCceeeccccCCCccce-EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSF-ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ..+.+||..+.+-...  +....... .+....+ +..+++++.+            ..+.+||..+++-...  +....
T Consensus        31 g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~~------------~~i~i~~~~~~~~~~~--~~~~~   93 (289)
T cd00200          31 GTIKVWDLETGELLRT--LKGHTGPVRDVAASAD-GTYLASGSSD------------KTIRLWDLETGECVRT--LTGHT   93 (289)
T ss_pred             cEEEEEEeeCCCcEEE--EecCCcceeEEEECCC-CCEEEEEcCC------------CeEEEEEcCcccceEE--EeccC
Confidence            4577788766542111  11111111 2222221 4455666643            3478888887532211  11111


Q ss_pred             CCeeEEEEccCCeEEEEeccCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ....++....++.+++.++.++
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~  115 (289)
T cd00200          94 SYVSSVAFSPDGRILSSSSRDK  115 (289)
T ss_pred             CcEEEEEEcCCCCEEEEecCCC
Confidence            1223334433246666666343

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=82.61  E-value=87  Score=34.93  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=34.6

Q ss_pred             CceEEEeCCCCceeEecccCCCC---------CCCCceEEEE-eCCeEEEEEeecCCCccccccccccccceeeEEEEEe
Q 014650          321 FDILRYDMGLNRWLKETTIPEIR---------PCKKPLGFIV-LDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYH  390 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~---------~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd  390 (421)
                      +.|.+||+.++....+......-         .-....+++. -+|+|||....+                  +.|.++|
T Consensus       825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------------------n~Irvid  886 (1057)
T PLN02919        825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------------------SLIRYLD  886 (1057)
T ss_pred             CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------------------CEEEEEE
Confidence            57899999988877664322100         0012234433 367899987544                  3678888


Q ss_pred             CCcce
Q 014650          391 PRKKT  395 (421)
Q Consensus       391 ~~~~~  395 (421)
                      +++++
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            87764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=82.19  E-value=44  Score=31.28  Aligned_cols=105  Identities=9%  Similarity=-0.037  Sum_probs=48.9

Q ss_pred             eEEEeCCCCCCCccEEEeCCC-CcEEECCCCCCCCCCCCCcceEEEE--eCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           73 LLCIFPQDPSISSPFLFDAAN-RACRPLPPLPCNPSTYSLCNFTSIS--LGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        73 ~~~~~g~~~~~~~~~~~d~~~-~~W~~l~~l~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ++|+....  ...+..||..+ .++..+..++..     ...+.++.  -++.||+.+..              ...+..
T Consensus         3 ~~y~~~~~--~~~I~~~~~~~~g~l~~~~~~~~~-----~~~~~l~~spd~~~lyv~~~~--------------~~~i~~   61 (330)
T PRK11028          3 IVYIASPE--SQQIHVWNLNHEGALTLLQVVDVP-----GQVQPMVISPDKRHLYVGVRP--------------EFRVLS   61 (330)
T ss_pred             EEEEEcCC--CCCEEEEEECCCCceeeeeEEecC-----CCCccEEECCCCCEEEEEECC--------------CCcEEE
Confidence            35555332  24466777653 566655444432     11122222  24567775431              234666


Q ss_pred             EeCc-cCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC
Q 014650          150 FNFL-TFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK  210 (421)
Q Consensus       150 yd~~-t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t  210 (421)
                      |+.. +.+++.+...+.+-.-+.++...++..+|+..-.            ...+.+|+..+
T Consensus        62 ~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~  111 (330)
T PRK11028         62 YRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDK  111 (330)
T ss_pred             EEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------------CCeEEEEEECC
Confidence            6664 4456555443333211223322221456766432            23567777754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=80.70  E-value=61  Score=31.90  Aligned_cols=129  Identities=10%  Similarity=0.006  Sum_probs=64.7

Q ss_pred             CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ...++.+|..+++-..+...+..     ........-+.+|++....  +          ...+++++|..+.+-+++..
T Consensus       227 ~~~l~~~dl~~g~~~~l~~~~g~-----~~~~~~SpDG~~l~~~~s~--~----------g~~~Iy~~d~~~g~~~~lt~  289 (433)
T PRK04922        227 RSAIYVQDLATGQRELVASFRGI-----NGAPSFSPDGRRLALTLSR--D----------GNPEIYVMDLGSRQLTRLTN  289 (433)
T ss_pred             CcEEEEEECCCCCEEEeccCCCC-----ccCceECCCCCEEEEEEeC--C----------CCceEEEEECCCCCeEECcc
Confidence            34588889888887777655421     1111111224456544322  1          12479999999887766654


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      -...........-+  .+|++.....        +  ...++.+|..+++.+.+..-  ..........-++++|++..+
T Consensus       290 ~~~~~~~~~~spDG--~~l~f~sd~~--------g--~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        290 HFGIDTEPTWAPDG--KSIYFTSDRG--------G--RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             CCCCccceEECCCC--CEEEEEECCC--------C--CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEEC
Confidence            32211122221112  3455443321        1  23688889888887766421  122222222333256666544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=80.42  E-value=31  Score=32.54  Aligned_cols=78  Identities=9%  Similarity=0.053  Sum_probs=41.5

Q ss_pred             cCCceEEEeCC-------CCCCCccEEEeCCCCcEEECCCCCCC-CCC--CCCcceEEEEeCCEEEEEcccccCCCCCCC
Q 014650           69 SQSDLLCIFPQ-------DPSISSPFLFDAANRACRPLPPLPCN-PST--YSLCNFTSISLGPYIYLLGGSHFDARSFPL  138 (421)
Q Consensus        69 ~~~~~~~~~g~-------~~~~~~~~~~d~~~~~W~~l~~l~~~-~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  138 (421)
                      ...+.+|+...       ....+-+..||+.+-+-..=-.+|.. +..  ..+..++...-+..+||.-=          
T Consensus        45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----------  114 (342)
T PF06433_consen   45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----------  114 (342)
T ss_dssp             TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----------
T ss_pred             CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----------
Confidence            44555665432       22344577999998754432233431 110  11223333333566777643          


Q ss_pred             CCCCCCCeEEEEeCccCceee
Q 014650          139 DRPLPSDSAFRFNFLTFSWER  159 (421)
Q Consensus       139 ~~~~~~~~v~~yd~~t~~W~~  159 (421)
                         .+..+|-+-|...++...
T Consensus       115 ---TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen  115 ---TPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             ---SSSEEEEEEETTTTEEEE
T ss_pred             ---CCCCeEEEEECCCCceee
Confidence               367789999999988654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	421
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		4e-07
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		1e-04
4asc_A	315	Crystal Structure Of The Kelch Domain Of Human Kbtb		2e-04

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 80  DPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLD 139
           + S+ S   +D        +  LP     +++     IS    IY LGG   D +     
Sbjct: 123 EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV-----ISHNGMIYCLGGKTDDKKC---- 173
Query: 140 RPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR 199
               ++  F +N     W+ +APM +PR  F  A  +   +I++AGG +   L       
Sbjct: 174 ----TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG--KIVIAGGVTEDGLS------ 221
Query: 200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYG 244
            +SVE +D+  N+W  M E P+ R+     +   +G  + +GG+ 
Sbjct: 222 -ASVEAFDLKTNKWEVMTEFPQERSSIS--LVSLAGSLYAIGGFA 263

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 116/313 (37%), Gaps = 83/313 (26%)
Query: 116 SISLGPYIYLLGGSHFDARS-----FPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF 170
           S+SL   IY++GG  +D RS       LD     D           W  +APM   RG  
Sbjct: 58  SVSLHDRIYVIGG--YDGRSRLSSVECLDYTADEDGV---------WYSVAPMNVRRG-- 104
Query: 171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV 230
             A   +L  +I   GG   S       R +S+ERYD   ++W  + +M   R G    V
Sbjct: 105 -LAGATTLGDMIYVSGGFDGS------RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Query: 231 AEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLXXXXXXXXXXXXXRGTWREVGDM 290
           A  SG  + +GGY     ++ V   D +                       G W  V  M
Sbjct: 158 A--SGVIYCLGGYDGLNILNSVEKYDPH----------------------TGHWTNVTPM 193
Query: 291 WDEWERSRIGKIVVMEDENRGRPEVFMLDKFD-------ILRYDMGLNRWLKETTIPEIR 343
               +RS  G + ++ D       ++++  FD       +  Y++  + W   TT+  + 
Sbjct: 194 --ATKRSGAG-VALLND------HIYVVGGFDGTAHLSSVEAYNIRTDSW---TTVTSMT 241
Query: 344 PCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP 403
             +  +G  VL G LY +    G+ L  +             I+ Y P   +W  + +  
Sbjct: 242 TPRCYVGATVLRGRLYAIAGYDGNSLLSS-------------IECYDPIIDSWEVVTSMG 288
Query: 404 PFPQPLDFGTAIM 416
              Q  D G  ++
Sbjct: 289 --TQRCDAGVCVL 299

>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 105 NPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164
           +P  Y +   T +S    +Y++GG   D +          +    ++   F W+ +APM 
Sbjct: 133 DPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL--------NKMCVYDPKKFEWKELAPMQ 184
Query: 165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224
           + R  F   A     +IIVA G +   L        SS E Y +  N+W   +  P+ R+
Sbjct: 185 TARSLF--GATVHDGRIIVAAGVTDTGL-------TSSAEVYSITDNKWAPFEAFPQERS 235
Query: 225 GCVGFVAEESGEFWVMGGYGDSRTISGVL 253
                +    G  + +GG+    T SG L
Sbjct: 236 SLS--LVSLVGTLYAIGGFATLETESGEL 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	8e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-22
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-15
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-26
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	8e-19
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-14
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	6e-17
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-11
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-20
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	6e-15
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	5e-04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-08
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	5e-07

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  110 bits (278), Expect = 8e-28
 Identities = 56/319 (17%), Positives = 87/319 (27%), Gaps = 77/319 (24%)

Query: 89  FDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAF 148
           F+  + +   +             +   +     +Y+LGGS             P     
Sbjct: 29  FNPKDYSWTDIRCPF-----EKRRDAACVFWDNVVYILGGSQLF----------PIKRMD 73

Query: 149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDV 208
            +N +  SW       +PR S A  A     +I  +GG           S +   E YD 
Sbjct: 74  CYNVVKDSWYSKLGPPTPRDSLAACAAE--GKIYTSGG------SEVGNSALYLFECYDT 125

Query: 209 AKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLK 268
               W +   M   R    G + E +G  +V GG   +     VL   E Y         
Sbjct: 126 RTESWHTKPSMLTQRCS-HG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVY--------- 174

Query: 269 KKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPEVFMLDK 320
                    D    TW E+  M     R          KI  +  ++   G   V     
Sbjct: 175 ---------DPATETWTELCPM--IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE---- 219

Query: 321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKR 380
                YD+ LN W     +  +      +    +   +YV+    G              
Sbjct: 220 ----YYDIKLNEW---KMVSPMPWKGVTVKCAAVGSIVYVLA---GFQGVGRLGH----- 264

Query: 381 AGCLFIQIYHPRKKTWRYI 399
                I  Y+     W   
Sbjct: 265 -----ILEYNTETDKWVAN 278

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 44/267 (16%), Positives = 74/267 (27%), Gaps = 54/267 (20%)

Query: 82  SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRP 141
            I     ++    +       P         +  + +    IY  GGS     +      
Sbjct: 68  PIKRMDCYNVVKDSWYSKLGPP-----TPRDSLAACAAEGKIYTSGGSEVGNSAL----- 117

Query: 142 LPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRIS 201
                   ++  T SW     M++ R S           I V GG         +G  ++
Sbjct: 118 ---YLFECYDTRTESWHTKPSMLTQRCSHGMVEAN--GLIYVCGG---SLGNNVSGRVLN 169

Query: 202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD 261
           S E YD A   W  +  M   R      +     + + +GG      +  V    EYY  
Sbjct: 170 SCEVYDPATETWTELCPMIEARKNHG--LVFVKDKIFAVGGQNGLGGLDNV----EYY-- 221

Query: 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENR-----GRPEVF 316
                           D     W+ V  M   W+   +     +          G   V 
Sbjct: 222 ----------------DIKLNEWKMVSPM--PWKGVTVK-CAAVGS--IVYVLAGFQGVG 260

Query: 317 MLDKFDILRYDMGLNRWLKETTIPEIR 343
            L    IL Y+   ++W+  + +    
Sbjct: 261 RLG--HILEYNTETDKWVANSKVRAFP 285

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 48/293 (16%), Positives = 81/293 (27%), Gaps = 77/293 (26%)

Query: 123 IYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQII 182
           I L GGS                S   FN   +SW  I      R   AC      N + 
Sbjct: 15  IALFGGS-------------QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWD--NVVY 59

Query: 183 VAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG 242
           + GG     +          ++ Y+V K+ W S    P  R           G+ +  GG
Sbjct: 60  ILGGSQLFPI--------KRMDCYNVVKDSWYSKLGPPTPRDSLA--ACAAEGKIYTSGG 109

Query: 243 YGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKI 302
                +    L + E Y                  D    +W     M    +R   G +
Sbjct: 110 SEVGNSA---LYLFECY------------------DTRTESWHTKPSM--LTQRCSHG-M 145

Query: 303 VVMEDE-------NRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD 355
           V                    +L+      YD     W   T +  +   +K  G + + 
Sbjct: 146 VEANGLIYVCGGSLGNNVSGRVLNS--CEVYDPATETW---TELCPMIEARKNHGLVFVK 200

Query: 356 GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQP 408
            +++ +    G +      +          ++ Y  +   W+ +    P P  
Sbjct: 201 DKIFAVG---GQNGLGGLDN----------VEYYDIKLNEWKMV---SPMPWK 237

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 73.9 bits (182), Expect = 6e-15
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 23/135 (17%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
            N   + +   I+ +GG          +     D+   ++     W+ ++PM     +  
Sbjct: 192 KNHGLVFVKDKIFAVGGQ---------NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242

Query: 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA 231
           CAAV   + + V  G            R+  +  Y+   ++WV+  ++  F         
Sbjct: 243 CAAVG--SIVYVLAGFQGVG-------RLGHILEYNTETDKWVANSKVRAFPVTSCLICV 293

Query: 232 EESGEFWVMGGYGDS 246
            +       G   ++
Sbjct: 294 VD-----TCGANEET 303

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 70/235 (29%)

Query: 176 RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP--RFRAGCVGFVAEE 233
           +  +  I   GGS+            S   ++     W  +      R  A         
Sbjct: 9   KKHDYRIALFGGSQPQ----------SCRYFNPKDYSWTDIRCPFEKRRDAA----CVFW 54

Query: 234 SGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE 293
               +++GG            +D Y                   +  + +W         
Sbjct: 55  DNVVYILGGSQLFPIKR----MDCY-------------------NVVKDSWYSKLGP--P 89

Query: 294 WERSRI------GKIVVM--EDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPC 345
             R  +      GKI      +          L  F+   YD     W  + ++   R  
Sbjct: 90  TPRDSLAACAAEGKIYTSGGSEVGNSA-----LYLFE--CYDTRTESWHTKPSMLTQRCS 142

Query: 346 KKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLF-IQIYHPRKKTWRYI 399
               G +  +G +YV     GS  N       +     L   ++Y P  +TW  +
Sbjct: 143 ---HGMVEANGLIYVC---GGSLGN-------NVSGRVLNSCEVYDPATETWTEL 184

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  108 bits (271), Expect = 1e-26
 Identities = 56/324 (17%), Positives = 93/324 (28%), Gaps = 61/324 (18%)

Query: 84  SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLP 143
                +D A   C         P      + + ++    +++ GG  ++  +        
Sbjct: 13  EGAVAYDPAANECYCASLSSQVP----KNHVSLVTKENQVFVAGGLFYNEDN---KEDPM 65

Query: 144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSV 203
           S    +F+ L   W  + P+ SPR  F        N I V GG             + SV
Sbjct: 66  SAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEAL--NSIYVVGGREIKD----GERCLDSV 119

Query: 204 ERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAV 263
             YD    +W   D +P    G    V       +V+GG G  R     +     Y    
Sbjct: 120 MCYDRLSFKWGESDPLPYVVYGHT--VLSHMDLVYVIGGKGSDRKCLNKM---CVY---- 170

Query: 264 VMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPEV 315
                         D  +  W+E+  M  +  RS        G+I+V     +       
Sbjct: 171 --------------DPKKFEWKELAPM--QTARSLFGATVHDGRIIVAAGVTDTGLTSSA 214

Query: 316 FMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRS 375
                     Y +  N+W            +  L  + L G LY +      +       
Sbjct: 215 E--------VYSITDNKW---APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELV 263

Query: 376 QQHKRAGCLFIQIYHPRKKTWRYI 399
                     I  Y+  +K W  +
Sbjct: 264 PTELND----IWRYNEEEKKWEGV 283

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 85.5 bits (212), Expect = 8e-19
 Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 17/134 (12%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
             F +      I +  G               + SA  ++     W         R S +
Sbjct: 188 SLFGATVHDGRIIVAAGV---------TDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238

Query: 172 CAAVRSLNQIIVAGG--GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGF 229
             ++     +   GG             + ++ + RY+  + +W  +     + AG    
Sbjct: 239 LVSLV--GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGAT-- 294

Query: 230 VAEESGEFWVMGGY 243
                    V+   
Sbjct: 295 FL--PVRLNVLRLT 306

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 43/274 (15%), Positives = 74/274 (27%), Gaps = 63/274 (22%)

Query: 145 DSAFRFNFLTFSWERI-APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSV 203
           + A  ++               P+   +       NQ+ VAGG   ++         +  
Sbjct: 13  EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE--NQVFVAGG-LFYNEDNKEDPMSAYF 69

Query: 204 ERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVD--EYYRD 261
            ++D   +EW+ M  +P  R      + E     +V+GG        G   +D    Y  
Sbjct: 70  LQFDHLDSEWLGMPPLPSPRCLFG--LGEALNSIYVVGGREIK---DGERCLDSVMCY-- 122

Query: 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMED-------ENRGRPE 314
                           D     W E   +   +       ++   D       +   R  
Sbjct: 123 ----------------DRLSFKWGESDPL--PYVVYGHT-VLSHMDLVYVIGGKGSDRKC 163

Query: 315 VFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRR 374
              L+K     YD     W     +  ++  +   G  V DG + V     G        
Sbjct: 164 ---LNKM--CVYDPKKFEW---KELAPMQTARSLFGATVHDGRIIVAA---GVTDTGLTS 212

Query: 375 SQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQP 408
           S           ++Y      W        FPQ 
Sbjct: 213 S----------AEVYSITDNKWAPF---EAFPQE 233

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  107 bits (270), Expect = 1e-26
 Identities = 65/333 (19%), Positives = 104/333 (31%), Gaps = 76/333 (22%)

Query: 82  SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRP 141
           S+S    ++ +N     L  L                +G  +Y +GG +        D  
Sbjct: 37  SLSYLEAYNPSNGTWLRLADLQ-----VPRSGLAGCVVGGLLYAVGGRNNSP-----DGN 86

Query: 142 LPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRIS 201
             S +   +N +T  W   APM  PR       +     I   GG              +
Sbjct: 87  TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID--GHIYAVGGSH-------GCIHHN 137

Query: 202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD 261
           SVERY+  ++EW  +  M   R G    VA  +   + +GG+  +  ++      E Y  
Sbjct: 138 SVERYEPERDEWHLVAPMLTRRIGVG--VAVLNRLLYAVGGFDGTNRLNSA----ECY-- 189

Query: 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVMEDENRGRPEV 315
                             +R  WR +  M     RS          I        G    
Sbjct: 190 ----------------YPERNEWRMITAM--NTIRSGAGVCVLHNCIYAAG----GYDGQ 227

Query: 316 FMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRS 375
             L+  +  RYD+    W   T +  ++  +  LG  V  G +YV+    G D +    S
Sbjct: 228 DQLNSVE--RYDVETETW---TFVAPMKHRRSALGITVHQGRIYVLG---GYDGHTFLDS 279

Query: 376 QQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQP 408
                     ++ Y P   TW  +         
Sbjct: 280 ----------VECYDPDTDTWSEV---TRMTSG 299

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 89  FDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAF 148
           +       R +  +                L   IY  GG          D     +S  
Sbjct: 189 YYPERNEWRMITAMNT-----IRSGAGVCVLHNCIYAAGGY---------DGQDQLNSVE 234

Query: 149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDV 208
           R++  T +W  +APM   R +      +   +I V GG           + + SVE YD 
Sbjct: 235 RYDVETETWTFVAPMKHRRSALGITVHQ--GRIYVLGGYD-------GHTFLDSVECYDP 285

Query: 209 AKNEWVSMDEMPRFRAGC 226
             + W  +  M   R+G 
Sbjct: 286 DTDTWSEVTRMTSGRSGV 303

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 69/253 (27%)

Query: 157 WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM 216
               +  + PRGS A      + ++I   GG            +S +E Y+ +   W+ +
Sbjct: 6   HHHHSSGLVPRGSHAPK----VGRLIYTAGGY-------FRQSLSYLEAYNPSNGTWLRL 54

Query: 217 DEMP--RFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTD 274
            ++   R             G  + +GG  +S   +      + Y               
Sbjct: 55  ADLQVPRSGLA----GCVVGGLLYAVGGRNNSPDGNTDSSALDCY--------------- 95

Query: 275 DHDDGDRGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPEVFMLDKFDILRY 326
              +     W     M     R+RI      G I  +           V         RY
Sbjct: 96  ---NPMTNQWSPCAPM--SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE--------RY 142

Query: 327 DMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFI 386
           +   + W     +   R     +G  VL+  LY +    G D      S           
Sbjct: 143 EPERDEWHLVAPMLTRRIG---VGVAVLNRLLYAVG---GFDGTNRLNS----------A 186

Query: 387 QIYHPRKKTWRYI 399
           + Y+P +  WR I
Sbjct: 187 ECYYPERNEWRMI 199

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  107 bits (268), Expect = 3e-26
 Identities = 54/322 (16%), Positives = 104/322 (32%), Gaps = 64/322 (19%)

Query: 84  SSPFLFD-AANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL 142
           ++   +D   N                   + + ++    +Y++GG + D  +       
Sbjct: 24  TAAVAYDPMENECYLTALAEQ-----IPRNHSSIVTQQNQVYVVGGLYVDEEN---KDQP 75

Query: 143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISS 202
                F+ + ++  W  + P+ S R  F    V   ++I V  G    +      + + S
Sbjct: 76  LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVD--DKIYVVAGKDLQT-----EASLDS 128

Query: 203 VERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDA 262
           V  YD    +W  +  +P         V   +G  + +GG  D +  +  +     Y   
Sbjct: 129 VLCYDPVAAKWSEVKNLPIKV-YGHN-VISHNGMIYCLGGKTDDKKCTNRV---FIY--- 180

Query: 263 VVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPE 314
                          +  +G W+++  M  +  RS        GKIV+     E+     
Sbjct: 181 ---------------NPKKGDWKDLAPM--KTPRSMFGVAIHKGKIVIAGGVTEDGLSAS 223

Query: 315 VFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRR 374
           V          +D+  N+W     + E    +  +  + L G LY +    G        
Sbjct: 224 VE--------AFDLKTNKW---EVMTEFPQERSSISLVSLAGSLYAI----GGFAMIQLE 268

Query: 375 SQQHKRAGCLFIQIYHPRKKTW 396
           S++        I  Y   KK W
Sbjct: 269 SKEFAPTEVNDIWKYEDDKKEW 290

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 80.1 bits (198), Expect = 6e-17
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 13/118 (11%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
             F        I + GG               S S   F+  T  WE +      R S +
Sbjct: 198 SMFGVAIHKGKIVIAGGV---------TEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248

Query: 172 CAAVRSLNQIIVAGG--GSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCV 227
             ++     +   GG    +      A + ++ + +Y+  K EW  M +  R+ +G  
Sbjct: 249 LVSLA--GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGAS 304

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 37/303 (12%), Positives = 81/303 (26%), Gaps = 80/303 (26%)

Query: 116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA-PMISPRGSFACAA 174
            + +   I L+  +                +A  ++ +       A     PR   +   
Sbjct: 11  GMFVKDLILLVNDT----------------AAVAYDPMENECYLTALAEQIPRNHSSIVT 54

Query: 175 VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEES 234
            +  NQ+ V GG              S   + D   +EWV +  +P  R      + E  
Sbjct: 55  QQ--NQVYVVGG-LYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG--LGEVD 109

Query: 235 GEFWVMGGYGDSRTISGVLPVD--EYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD 292
            + +V+ G            +D    Y                  D     W EV ++  
Sbjct: 110 DKIYVVAGKDL----QTEASLDSVLCY------------------DPVAAKWSEVKNL-- 145

Query: 293 EWERSRIGKIVVMED-------ENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPC 345
             +      ++           +   +      ++     Y+     W     +  ++  
Sbjct: 146 PIKVYGHN-VISHNGMIYCLGGKTDDKKC---TNRV--FIYNPKKGDW---KDLAPMKTP 196

Query: 346 KKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPF 405
           +   G  +  G++ +     G   +    S          ++ +  +   W  +     F
Sbjct: 197 RSMFGVAIHKGKIVIAG---GVTEDGLSAS----------VEAFDLKTNKWEVM---TEF 240

Query: 406 PQP 408
           PQ 
Sbjct: 241 PQE 243

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  104 bits (261), Expect = 2e-25
 Identities = 57/333 (17%), Positives = 102/333 (30%), Gaps = 79/333 (23%)

Query: 82  SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRP 141
           +I S   +D        +  LP        C    + +   ++ +GG          +  
Sbjct: 28  AIRSVECYDFKEERWHQVAELP-----SRRCRAGMVYMAGLVFAVGGF---------NGS 73

Query: 142 LPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRIS 201
           L   +   ++ +   W  +A M   R +   A +     +   GG           + +S
Sbjct: 74  LRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN--GLLYAVGGFD-------GSTGLS 124

Query: 202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD 261
           SVE Y++  NEW  +  M   R+     V    G  + +GGY  +      L   E Y  
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVG--VGVVGGLLYAVGGYDVAS--RQCLSTVECY-- 178

Query: 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRP 313
                           +     W  + +M     RS          +  +   D    R 
Sbjct: 179 ----------------NATTNEWTYIAEM--STRRSGAGVGVLNNLLYAVGGHDGPLVRK 220

Query: 314 EVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETR 373
            V          YD   N W     + ++  C++  G   ++G LYV+    G D +   
Sbjct: 221 SVE--------VYDPTTNAW---RQVADMNMCRRNAGVCAVNGLLYVV---GGDDGSCNL 266

Query: 374 RSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFP 406
            S          ++ Y+P    W  + +     
Sbjct: 267 AS----------VEYYNPTTDKWTVVSSCMSTG 289

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFA 171
                  L   +Y +GG          D PL   S   ++  T +W ++A M   R +  
Sbjct: 196 SGAGVGVLNNLLYAVGGH---------DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246

Query: 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM-DEM--PRFRAGCV 227
             AV     + V GG             ++SVE Y+   ++W  +   M   R  AG  
Sbjct: 247 VCAVN--GLLYVVGGDDGSC-------NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVT 296

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 53/246 (21%), Positives = 84/246 (34%), Gaps = 69/246 (28%)

Query: 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP--R 221
           +S R          L +++V  GG        A   I SVE YD  +  W  + E+P  R
Sbjct: 2   MSVRTRLRTPMN--LPKLMVVVGGQ-------APKAIRSVECYDFKEERWHQVAELPSRR 52

Query: 222 FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDR 281
            RAG    +   +G  + +GG+  S  +  V    + Y                  D  +
Sbjct: 53  CRAG----MVYMAGLVFAVGGFNGSLRVRTV----DSY------------------DPVK 86

Query: 282 GTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPEVFMLDKFDILRYDMGLNRW 333
             W  V +M     RS +      G +  +   D + G   V          Y++  N W
Sbjct: 87  DQWTSVANM--RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVE--------AYNIKSNEW 136

Query: 334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK 393
                +   R     +G  V+ G LY +    G D+     S+Q        ++ Y+   
Sbjct: 137 FHVAPMNTRRSS---VGVGVVGGLLYAVG---GYDVA----SRQCLST----VECYNATT 182

Query: 394 KTWRYI 399
             W YI
Sbjct: 183 NEWTYI 188

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  102 bits (257), Expect = 7e-25
 Identities = 72/342 (21%), Positives = 109/342 (31%), Gaps = 85/342 (24%)

Query: 88  LFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA 147
            +D   +    LP +             S+SL   IY++GG          D      S 
Sbjct: 35  KYDPKTQEWSFLPSIT-----RKRRYVASVSLHDRIYVIGGY---------DGRSRLSSV 80

Query: 148 FRFNFLT---FSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVE 204
              ++       W  +APM   RG      +   + I V+GG            R +S+E
Sbjct: 81  ECLDYTADEDGVWYSVAPMNVRRGLAGATTLG--DMIYVSGGFD-------GSRRHTSME 131

Query: 205 RYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVV 264
           RYD   ++W  + +M   R G    VA   G  + +GGY     ++ V    E Y     
Sbjct: 132 RYDPNIDQWSMLGDMQTAREGAGLVVAS--GVIYCLGGYDGLNILNSV----EKY----- 180

Query: 265 MQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVMEDENRGRPEVFML 318
                        D   G W  V  M    +RS          I V+     G      L
Sbjct: 181 -------------DPHTGHWTNVTPM--ATKRSGAGVALLNDHIYVV----GGFDGTAHL 221

Query: 319 DKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQH 378
              +   Y++  + W   TT+  +   +  +G  VL G LY +    G D N    S   
Sbjct: 222 SSVE--AYNIRTDSW---TTVTSMTTPRCYVGATVLRGRLYAIA---GYDGNSLLSS--- 270

Query: 379 KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVR 420
                  I+ Y P   +W  +                 C +R
Sbjct: 271 -------IECYDPIIDSWEVV---TSMGTQRCDAGV--CVLR 300

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 88.5 bits (220), Expect = 6e-20
 Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 76/288 (26%)

Query: 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQI 181
            + ++GG           +  P D   +++  T  W  +  +   R   A  ++   ++I
Sbjct: 16  VLLVVGGFG--------SQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLH--DRI 65

Query: 182 IVAGGGSRHSLFGAAGSRISSVERYDVAKNE---WVSMDEM--PRFRAGCVGFVAEESGE 236
            V GG           SR+SSVE  D   +E   W S+  M   R  AG           
Sbjct: 66  YVIGGYD-------GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG----ATTLGDM 114

Query: 237 FWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER 296
            +V GG+  SR  + +    E Y                  D +   W  +GDM  +  R
Sbjct: 115 IYVSGGFDGSRRHTSM----ERY------------------DPNIDQWSMLGDM--QTAR 150

Query: 297 SRIGKIVVMEDENR-----GRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGF 351
              G +VV           G   + +L+   + +YD     W   T +  +   +   G 
Sbjct: 151 EGAG-LVVA--SGVIYCLGGYDGLNILNS--VEKYDPHTGHW---TNVTPMATKRSGAGV 202

Query: 352 IVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI 399
            +L+  +YV+    G D      S          ++ Y+ R  +W  +
Sbjct: 203 ALLNDHIYVV---GGFDGTAHLSS----------VEAYNIRTDSWTTV 237

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 51/247 (20%), Positives = 75/247 (30%), Gaps = 68/247 (27%)

Query: 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP-- 220
           M  PR     A + +   ++V GG      FG+  S I  VE+YD    EW  +  +   
Sbjct: 2   MQGPR---TRARLGANEVLLVVGG------FGSQQSPIDVVEKYDPKTQEWSFLPSITRK 52

Query: 221 RFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGD 280
           R                +V+GGY     +S V    E                 D+   +
Sbjct: 53  RRYVA----SVSLHDRIYVIGGYDGRSRLSSV----ECL---------------DYTADE 89

Query: 281 RGTWREVGDMWDEWERSRI------GKIVVM--EDENRGRPEVFMLDKFDILRYDMGLNR 332
            G W  V  M     R           I V    D +R    +         RYD  +++
Sbjct: 90  DGVWYSVAPM--NVRRGLAGATTLGDMIYVSGGFDGSRRHTSME--------RYDPNIDQ 139

Query: 333 WLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPR 392
           W     +   R      G +V  G +Y    L G D      S          ++ Y P 
Sbjct: 140 WSMLGDMQTAREG---AGLVVASGVIY---CLGGYDGLNILNS----------VEKYDPH 183

Query: 393 KKTWRYI 399
              W  +
Sbjct: 184 TGHWTNV 190

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 90.0 bits (223), Expect = 4e-20
 Identities = 50/351 (14%), Positives = 93/351 (26%), Gaps = 74/351 (21%)

Query: 99  LPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWE 158
           LP  P         + T       +Y+  GS     ++                    W 
Sbjct: 3   LPETPV-----PFKSGTGAIDNDTVYIGLGS--AGTAW---------YKLDTQAKDKKWT 46

Query: 159 RIAPMI-SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM- 216
            +A     PR     A +     + V GG  ++S         + V +Y+   N WV + 
Sbjct: 47  ALAAFPGGPRDQATSAFID--GNLYVFGGIGKNS--EGLTQVFNDVHKYNPKTNSWVKLM 102

Query: 217 DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD-AVVMQLKKKKKTDD 275
              P   AG V FV    G+ +V GG   +        ++E  +D   + ++        
Sbjct: 103 SHAPMGMAGHVTFVHN--GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK 160

Query: 276 HDDG-----------DRGTWREVGDM------------WDEWERSRIGKIVVM--EDENR 310
            +D                W   G+                       K  ++  E +  
Sbjct: 161 AEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG-------DKTWLINGEAKPG 213

Query: 311 GRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGF--IVLDGELYVMTVLKGSD 368
            R +        +   D   N   K   +  +       G    + +  L          
Sbjct: 214 LRTD-------AVFELDFTGNNL-KWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG 265

Query: 369 LNETRRSQQ---HKRAGCLF-IQIYHPRKKTWRYIFTKPPFPQPLDFGTAI 415
             E  ++ +   H+     +   I+      W          Q   +G ++
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYGVSL 313

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 35/197 (17%)

Query: 87  FLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDS 146
             FD + +        P   +         ++ G   +L+ G               +D+
Sbjct: 171 LSFDPSTQQWSYAGESPWYGT----AGAAVVNKGDKTWLINGEAKPGLR--------TDA 218

Query: 147 AFRFNFLTF--SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA-------- 196
            F  +F      W ++AP+ SP G     A  S + +I AGG                  
Sbjct: 219 VFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAH 278

Query: 197 --GSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLP 254
               +  S + +     +W    E+ + RA  V           ++GG            
Sbjct: 279 EGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN--NSLLIIGGETAGG------- 329

Query: 255 VDEYYRDAVVMQLKKKK 271
             +   D+V++ +K  K
Sbjct: 330 --KAVTDSVLITVKDNK 344

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 74.6 bits (183), Expect = 6e-15
 Identities = 36/310 (11%), Positives = 78/310 (25%), Gaps = 78/310 (25%)

Query: 97  RPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS 156
             L   P  P        TS  +   +Y+ GG   ++           +   ++N  T S
Sbjct: 46  TALAAFPGGPRDQ----ATSAFIDGNLYVFGGIGKNSE----GLTQVFNDVHKYNPKTNS 97

Query: 157 WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRIS--------------- 201
           W ++        +     V   N      GG   ++F      ++               
Sbjct: 98  WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAH 155

Query: 202 -------------SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRT 248
                         +  +D +  +W    E P +       V +   + W++ G      
Sbjct: 156 YFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG-DKTWLINGEAKPG- 213

Query: 249 ISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKI 302
                      R   V +L           G+   W ++  +      +          +
Sbjct: 214 ----------LRTDAVFEL--------DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255

Query: 303 VVMEDENR-GRPEVFMLDK----------FDILRYDMGLNRWLKETTIPEIRPCKKPLGF 351
           +        G  E +   K          +    +     +W K   + + R        
Sbjct: 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY---GVS 312

Query: 352 IVLDGELYVM 361
           +  +  L ++
Sbjct: 313 LPWNNSLLII 322

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 13/178 (7%)

Query: 76  IFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPY----IYLLGGSHF 131
           +F   PS +  + + + +   +       N          +  +       I   GGS  
Sbjct: 362 VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421

Query: 132 DARSFPLDRPL---PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGS 188
              S            +     N    +      +   R +F  + V       + GG  
Sbjct: 422 YQDSDATTNAHIITLGEPGTSPN----TVFASNGLYFAR-TFHTSVVLPDGSTFITGGQR 476

Query: 189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS 246
           R   F  +   + + E Y   ++ +   +     R      +    G  +  GG    
Sbjct: 477 RGIPFEDSTP-VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 41.5 bits (96), Expect = 5e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 7/80 (8%)

Query: 144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSV 203
           +     ++  + SW     M   RG  + +A  S  ++   GG        + G    + 
Sbjct: 264 AKKTSLYDSSSDSWIPGPDMQVARGYQS-SATMSDGRVFTIGGS------WSGGVFEKNG 316

Query: 204 ERYDVAKNEWVSMDEMPRFR 223
           E Y  +   W S+       
Sbjct: 317 EVYSPSSKTWTSLPNAKVNP 336

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 32/264 (12%), Positives = 66/264 (25%), Gaps = 55/264 (20%)

Query: 115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAA 174
           T+IS    + L+GG     +             + F+  T  W  I  +   R     A 
Sbjct: 446 TTISRNNQLLLIGGRKAPHQGL--------SDNWIFDMKTREWSMIKSLSHTR-FRHSAC 496

Query: 175 VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-----PRFRAGCVGF 229
                 +++ GG +             ++  Y+V +  +  +            +  + F
Sbjct: 497 SLPDGNVLILGGVTEG----------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546

Query: 230 VAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGD 289
                    + GG+ D  T+S    + +Y                   +        +  
Sbjct: 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKY-----------------DAENATEPITVIKK 589

Query: 290 MWDEWERSRIGKIVVMEDENR-----GR-PEVFMLDKFDILRYDMGLNRWLKETTIPEIR 343
           +       R G  +      +     G  P         I+  D           I    
Sbjct: 590 LQHPL-FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL-TSIPISRRI 647

Query: 344 PCKKPLGFI------VLDGELYVM 361
                L            G ++++
Sbjct: 648 WEDHSLMLAGFSLVSTSMGTIHII 671

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 27/194 (13%)

Query: 61  VFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLG 120
           +F  H     +     F               N        L       +         G
Sbjct: 338 LFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAG 397

Query: 121 PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI------APMISPRGSFACAA 174
             ++ +GGS+              +   + +      +        + +   R       
Sbjct: 398 NDVFYMGGSNPY----------RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT 447

Query: 175 VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP--RFRAGCVGFVAE 232
           +   NQ+++ GG             +S    +D+   EW  +  +   RFR         
Sbjct: 448 ISRNNQLLLIGGRKAP------HQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL--- 498

Query: 233 ESGEFWVMGGYGDS 246
             G   ++GG  + 
Sbjct: 499 PDGNVLILGGVTEG 512

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.55
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.44
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.4
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.91
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.87
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.39
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.25
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.13
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.01
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.95
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.81
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.71
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.63
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.45
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.44
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.06
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.01
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	95.98
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	95.94
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.83
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.76
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.75
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.72
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.72
3jro_A	753	Fusion protein of protein transport protein SEC13	95.65
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.57
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.41
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.39
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.31
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.3
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.23
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	95.2
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.19
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.16
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.15
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.14
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.02
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.82
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.77
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.72
3jro_A	753	Fusion protein of protein transport protein SEC13	94.6
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.37
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.34
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.05
2pm7_B	297	Protein transport protein SEC13, protein transport	94.04
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.04
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.03
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.88
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	93.86
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.8
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.7
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	93.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.45
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.41
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	93.04
3ott_A	758	Two-component system sensor histidine kinase; beta	92.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	92.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.7
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.57
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.52
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.24
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	92.15
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.13
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	91.97
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.94
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	91.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	91.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	91.84
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.65
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.64
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	91.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	90.81
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	90.67
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.61
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	90.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	90.57
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	90.57
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	90.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	90.26
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.19
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	90.12
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	90.04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	90.02
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.01
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.01
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	89.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	89.74
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	89.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	89.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	89.66
2pm7_B	297	Protein transport protein SEC13, protein transport	89.66
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	89.59
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	89.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	89.55
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.48
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	89.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	89.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	89.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	89.12
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	89.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	88.85
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	88.81
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	88.76
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	88.42
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	88.27
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	88.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.11
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	87.04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	86.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	86.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	86.33
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.73
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	84.83
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	84.7
3ott_A	758	Two-component system sensor histidine kinase; beta	84.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	83.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	83.85
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	83.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	83.46
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	83.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	82.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	82.71
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	82.65
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	82.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	81.65
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	81.17
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	80.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	80.7
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.61
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	80.36

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=331.57  Aligned_cols=281  Identities=19%  Similarity=0.350  Sum_probs=230.0

Q ss_pred             CCceEEEeCCC--CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQD--PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~--~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      .++.+|++||.  ...+++++||+.+++|..++++|.+     |.+|++++.+++|||+||.+..         ...+++
T Consensus        14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~lyv~GG~~~~---------~~~~~~   79 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSR-----RCRAGMVYMAGLVFAVGGFNGS---------LRVRTV   79 (302)
T ss_dssp             -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEESCBCSS---------SBCCCE
T ss_pred             CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcc-----cccceEEEECCEEEEEeCcCCC---------ccccce
Confidence            45778888883  3567899999999999999999865     8999999999999999997533         246889


Q ss_pred             EEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCee
Q 014650          148 FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCV  227 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~  227 (421)
                      ++||+.+++|+.+++||.+|..|++++++  ++||++||.+       ....++++++||+.+++|+.++++|.+|..|+
T Consensus        80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~-------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  150 (302)
T 2xn4_A           80 DSYDPVKDQWTSVANMRDRRSTLGAAVLN--GLLYAVGGFD-------GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG  150 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEEEEEC-------SSCEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             EEECCCCCceeeCCCCCccccceEEEEEC--CEEEEEcCCC-------CCccCceEEEEeCCCCeEeecCCCCCcccCce
Confidence            99999999999999999999999999999  9999999975       33567899999999999999999999999887


Q ss_pred             EEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccc------cCe
Q 014650          228 GFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSR------IGK  301 (421)
Q Consensus       228 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~  301 (421)
                      ++++.  ++||++||.+....        ...+++++||+.++            +|+.+++++.+  +..      .++
T Consensus       151 ~~~~~--~~iyv~GG~~~~~~--------~~~~~~~~yd~~~~------------~W~~~~~~p~~--r~~~~~~~~~~~  206 (302)
T 2xn4_A          151 VGVVG--GLLYAVGGYDVASR--------QCLSTVECYNATTN------------EWTYIAEMSTR--RSGAGVGVLNNL  206 (302)
T ss_dssp             EEEET--TEEEEECCEETTTT--------EECCCEEEEETTTT------------EEEEECCCSSC--CBSCEEEEETTE
T ss_pred             EEEEC--CEEEEEeCCCCCCC--------ccccEEEEEeCCCC------------cEEECCCCccc--cccccEEEECCE
Confidence            77665  89999999865431        23445666666665            99999988764  332      379


Q ss_pred             EEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccc
Q 014650          302 IVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRA  381 (421)
Q Consensus       302 i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~  381 (421)
                      ||++||. ++..     ..+++++||+.+++|+.++++|.   +|..++++.++++|||+||.++...            
T Consensus       207 iyv~GG~-~~~~-----~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~i~v~GG~~~~~~------------  265 (302)
T 2xn4_A          207 LYAVGGH-DGPL-----VRKSVEVYDPTTNAWRQVADMNM---CRRNAGVCAVNGLLYVVGGDDGSCN------------  265 (302)
T ss_dssp             EEEECCB-SSSS-----BCCCEEEEETTTTEEEEECCCSS---CCBSCEEEEETTEEEEECCBCSSSB------------
T ss_pred             EEEECCC-CCCc-----ccceEEEEeCCCCCEeeCCCCCC---ccccCeEEEECCEEEEECCcCCCcc------------
Confidence            9999997 3332     23789999999999999998886   5688899999999999999875432            


Q ss_pred             eeeEEEEEeCCcceeeEecccCCCCCCCCccceeEEEeeC
Q 014650          382 GCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVRL  421 (421)
Q Consensus       382 ~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~~~~  421 (421)
                       ..++++||+++++|+.++.  .++.++..++++++.-+|
T Consensus       266 -~~~v~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~i  302 (302)
T 2xn4_A          266 -LASVEYYNPTTDKWTVVSS--CMSTGRSYAGVTVIDKRL  302 (302)
T ss_dssp             -CCCEEEEETTTTEEEECSS--CCSSCCBSCEEEEEEC--
T ss_pred             -cccEEEEcCCCCeEEECCc--ccCcccccceEEEecccC
Confidence             2689999999999999862  446678888888876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.1e-43  Score=329.25  Aligned_cols=278  Identities=19%  Similarity=0.243  Sum_probs=228.9

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ..+.+|++||....+++++||+.+++|+.++++|.+     |.+|++++++++|||+||.+  .        ...+++++
T Consensus        10 ~~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~lyv~GG~~--~--------~~~~~~~~   74 (306)
T 3ii7_A           10 KHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-----RRDAACVFWDNVVYILGGSQ--L--------FPIKRMDC   74 (306)
T ss_dssp             CCCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC-----CBSCEEEEETTEEEEECCBS--S--------SBCCEEEE
T ss_pred             ccceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc-----cceeEEEEECCEEEEEeCCC--C--------CCcceEEE
Confidence            346788888865588999999999999999999865     89999999999999999985  1        35789999


Q ss_pred             EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEE
Q 014650          150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGF  229 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~  229 (421)
                      ||+.+++|+.++++|.+|..|++++++  ++|||+||.+      ......+++++||+.+++|+.++++|.+|..|+++
T Consensus        75 ~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~------~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  146 (306)
T 3ii7_A           75 YNVVKDSWYSKLGPPTPRDSLAACAAE--GKIYTSGGSE------VGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV  146 (306)
T ss_dssp             EETTTTEEEEEECCSSCCBSCEEEEET--TEEEEECCBB------TTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EeCCCCeEEECCCCCccccceeEEEEC--CEEEEECCCC------CCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE
Confidence            999999999999999999999999999  9999999975      23456889999999999999999999999988777


Q ss_pred             EEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccc------cCeEE
Q 014650          230 VAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSR------IGKIV  303 (421)
Q Consensus       230 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~  303 (421)
                      ++.  ++||++||.+......      ...+++++||+.++            +|+.+++++.+  +..      .++||
T Consensus       147 ~~~--~~iyv~GG~~~~~~~~------~~~~~~~~yd~~~~------------~W~~~~~~p~~--r~~~~~~~~~~~i~  204 (306)
T 3ii7_A          147 EAN--GLIYVCGGSLGNNVSG------RVLNSCEVYDPATE------------TWTELCPMIEA--RKNHGLVFVKDKIF  204 (306)
T ss_dssp             EET--TEEEEECCEESCTTTC------EECCCEEEEETTTT------------EEEEECCCSSC--CBSCEEEEETTEEE
T ss_pred             EEC--CEEEEECCCCCCCCcc------cccceEEEeCCCCC------------eEEECCCccch--hhcceEEEECCEEE
Confidence            665  8999999986543210      22455666666665            99999988764  332      37899


Q ss_pred             EEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccccccccccccee
Q 014650          304 VMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGC  383 (421)
Q Consensus       304 v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++||. ++..     ...++++||+.+++|+.++++|.   +|..++++.++++|||+||.++...+             
T Consensus       205 v~GG~-~~~~-----~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~-------------  262 (306)
T 3ii7_A          205 AVGGQ-NGLG-----GLDNVEYYDIKLNEWKMVSPMPW---KGVTVKCAAVGSIVYVLAGFQGVGRL-------------  262 (306)
T ss_dssp             EECCE-ETTE-----EBCCEEEEETTTTEEEECCCCSC---CBSCCEEEEETTEEEEEECBCSSSBC-------------
T ss_pred             EEeCC-CCCC-----CCceEEEeeCCCCcEEECCCCCC---CccceeEEEECCEEEEEeCcCCCeee-------------
Confidence            99997 3331     23789999999999999998886   56889999999999999998765432             


Q ss_pred             eEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          384 LFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       384 ~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                      .++++||+++++|+.++.+|   .++..++++++
T Consensus       263 ~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~  293 (306)
T 3ii7_A          263 GHILEYNTETDKWVANSKVR---AFPVTSCLICV  293 (306)
T ss_dssp             CEEEEEETTTTEEEEEEEEE---CCSCTTCEEEE
T ss_pred             eeEEEEcCCCCeEEeCCCcc---cccceeEEEEE
Confidence            68999999999999987665   45566666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.8e-43  Score=329.00  Aligned_cols=279  Identities=21%  Similarity=0.322  Sum_probs=227.4

Q ss_pred             ccCCceEEEeCC--CCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQ--DPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        68 ~~~~~~~~~~g~--~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      ...++.||++||  ....+++++||+.+++|..++++|.+     |.+|++++.+++|||+||......     .....+
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~   90 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-----RSGLAGCVVGGLLYAVGGRNNSPD-----GNTDSS   90 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-----CBSCEEEEETTEEEEECCEEEETT-----EEEECC
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc-----cccceEEEECCEEEEECCCcCCCC-----CCeecc
Confidence            445677888888  34677899999999999999999865     899999999999999999842100     012568


Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG  225 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~  225 (421)
                      ++++||+.+++|+++++||.+|..|++++++  ++||++||.+       .....+++++||+.+++|+.++++|.+|..
T Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~-------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  161 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVID--GHIYAVGGSH-------GCIHHNSVERYEPERDEWHLVAPMLTRRIG  161 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEET--TEEEEECCEE-------TTEECCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             eEEEECCCCCeEeECCCCCcCccccEEEEEC--CEEEEEcCCC-------CCcccccEEEECCCCCeEeECCCCCccccc
Confidence            8999999999999999999999999999999  9999999975       234578899999999999999999999998


Q ss_pred             eeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccc------c
Q 014650          226 CVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSR------I  299 (421)
Q Consensus       226 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~  299 (421)
                      |+++++.  ++||++||.++..          ..+++++||+.++            +|+.+++++.+  |..      .
T Consensus       162 ~~~~~~~--~~iyv~GG~~~~~----------~~~~~~~yd~~~~------------~W~~~~~~p~~--r~~~~~~~~~  215 (308)
T 1zgk_A          162 VGVAVLN--RLLYAVGGFDGTN----------RLNSAECYYPERN------------EWRMITAMNTI--RSGAGVCVLH  215 (308)
T ss_dssp             CEEEEET--TEEEEECCBCSSC----------BCCCEEEEETTTT------------EEEECCCCSSC--CBSCEEEEET
T ss_pred             eEEEEEC--CEEEEEeCCCCCC----------cCceEEEEeCCCC------------eEeeCCCCCCc--cccceEEEEC
Confidence            8777764  8999999987653          2344566666555            99999988764  332      3


Q ss_pred             CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccc
Q 014650          300 GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHK  379 (421)
Q Consensus       300 g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~  379 (421)
                      ++||++||. ++..     ...++++||+.+++|+++.++|.   +|..++++.++++|||+||.++...          
T Consensus       216 ~~iyv~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~----------  276 (308)
T 1zgk_A          216 NCIYAAGGY-DGQD-----QLNSVERYDVETETWTFVAPMKH---RRSALGITVHQGRIYVLGGYDGHTF----------  276 (308)
T ss_dssp             TEEEEECCB-CSSS-----BCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCBCSSCB----------
T ss_pred             CEEEEEeCC-CCCC-----ccceEEEEeCCCCcEEECCCCCC---CccceEEEEECCEEEEEcCcCCCcc----------
Confidence            799999997 3332     24789999999999999998886   5688999999999999999875442          


Q ss_pred             cceeeEEEEEeCCcceeeEecccCCCCCCCCccceeE
Q 014650          380 RAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIM  416 (421)
Q Consensus       380 ~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~  416 (421)
                         ..++++||+++++|+.++.+   +.++..+++++
T Consensus       277 ---~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~  307 (308)
T 1zgk_A          277 ---LDSVECYDPDTDTWSEVTRM---TSGRSGVGVAV  307 (308)
T ss_dssp             ---CCEEEEEETTTTEEEEEEEC---SSCCBSCEEEE
T ss_pred             ---cceEEEEcCCCCEEeecCCC---CCCcccceeEe
Confidence               36899999999999998755   45566666665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.9e-42  Score=320.24  Aligned_cols=276  Identities=22%  Similarity=0.336  Sum_probs=226.4

Q ss_pred             CCceEEEeCC-C---CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC
Q 014650           70 QSDLLCIFPQ-D---PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        70 ~~~~~~~~g~-~---~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      .++.+|++|| .   ...+++++||+.+++|..++++|.+     |.+|+++..+++|||+||....         ...+
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~---------~~~~   78 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK-----RRYVASVSLHDRIYVIGGYDGR---------SRLS   78 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC-----CBSCEEEEETTEEEEECCBCSS---------CBCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh-----hccccEEEECCEEEEEcCCCCC---------ccCc
Confidence            4667888888 2   3577899999999999999998865     8999999999999999998532         2578


Q ss_pred             eEEEEeCccCc---eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          146 SAFRFNFLTFS---WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       146 ~v~~yd~~t~~---W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ++++||+.+++   |+.++++|.+|..|++++++  ++||++||..       .....+++++||+.+++|+.++++|.+
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~-------~~~~~~~~~~~d~~~~~W~~~~~~p~~  149 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLG--DMIYVSGGFD-------GSRRHTSMERYDPNIDQWSMLGDMQTA  149 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEET--TEEEEECCBC-------SSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred             eEEEEECCCCCCCeeEECCCCCCCccceeEEEEC--CEEEEEcccC-------CCcccceEEEEcCCCCeEEECCCCCCC
Confidence            99999999999   99999999999999999999  9999999986       234578999999999999999999999


Q ss_pred             CCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc----cc
Q 014650          223 RAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER----SR  298 (421)
Q Consensus       223 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~----~~  298 (421)
                      |..|+++++.  ++||++||.++..          ..+++++||+.++            +|+.+++++.+...    ..
T Consensus       150 r~~~~~~~~~--~~iyv~GG~~~~~----------~~~~~~~~d~~~~------------~W~~~~~~p~~r~~~~~~~~  205 (301)
T 2vpj_A          150 REGAGLVVAS--GVIYCLGGYDGLN----------ILNSVEKYDPHTG------------HWTNVTPMATKRSGAGVALL  205 (301)
T ss_dssp             CBSCEEEEET--TEEEEECCBCSSC----------BCCCEEEEETTTT------------EEEEECCCSSCCBSCEEEEE
T ss_pred             cccceEEEEC--CEEEEECCCCCCc----------ccceEEEEeCCCC------------cEEeCCCCCcccccceEEEE
Confidence            9888777764  8999999987642          3344566666655            99999988764211    12


Q ss_pred             cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccccccccc
Q 014650          299 IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQH  378 (421)
Q Consensus       299 ~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  378 (421)
                      .++||++||. ++..     ..+++++||+.+++|+.++++|.   +|..++++.++++|||+||.++...         
T Consensus       206 ~~~i~v~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~---------  267 (301)
T 2vpj_A          206 NDHIYVVGGF-DGTA-----HLSSVEAYNIRTDSWTTVTSMTT---PRCYVGATVLRGRLYAIAGYDGNSL---------  267 (301)
T ss_dssp             TTEEEEECCB-CSSS-----BCCCEEEEETTTTEEEEECCCSS---CCBSCEEEEETTEEEEECCBCSSSB---------
T ss_pred             CCEEEEEeCC-CCCc-----ccceEEEEeCCCCcEEECCCCCC---cccceeEEEECCEEEEEcCcCCCcc---------
Confidence            3799999997 3332     14789999999999999998886   5688999999999999999875442         


Q ss_pred             ccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          379 KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       379 ~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                          ..++++||+++++|+.++.+|   .++..++++++
T Consensus       268 ----~~~v~~yd~~~~~W~~~~~~~---~~r~~~~~~~~  299 (301)
T 2vpj_A          268 ----LSSIECYDPIIDSWEVVTSMG---TQRCDAGVCVL  299 (301)
T ss_dssp             ----EEEEEEEETTTTEEEEEEEEE---EEEESCEEEEE
T ss_pred             ----cccEEEEcCCCCeEEEcCCCC---cccccceEEEe
Confidence                368999999999999987655   45666666654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.1e-42  Score=323.86  Aligned_cols=290  Identities=21%  Similarity=0.343  Sum_probs=224.4

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      ++.++++|+    +++++|||.+++|+. +++|.|   .+|.+|++++.+++|||+||...++..   ......+++++|
T Consensus         4 ~~~l~~~GG----~~~~~yd~~~~~W~~-~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~~~~~   72 (315)
T 4asc_A            4 QDLIFMISE----EGAVAYDPAANECYC-ASLSSQ---VPKNHVSLVTKENQVFVAGGLFYNEDN---KEDPMSAYFLQF   72 (315)
T ss_dssp             EEEEEEEET----TEEEEEETTTTEEEE-EECCCC---SCSSEEEEECTTCCEEEEEEEEECSSC---SSSCEEEEEEEE
T ss_pred             ceEEEEEcC----CceEEECCCCCeEec-CCCCCC---CCccceEEEEECCEEEEEcCcccCCCC---CccccccceEEe
Confidence            467888888    569999999999987 677654   459999999999999999997432110   011234569999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      |+.+++|+.+++||.+|..|++++++  ++|||+||.+..    ......+++++||+.+++|+.++++|.+|..|++++
T Consensus        73 d~~~~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~~----~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           73 DHLDSEWLGMPPLPSPRCLFGLGEAL--NSIYVVGGREIK----DGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             ETTTTEEEECCCBSSCEESCEEEEET--TEEEEECCEESS----TTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             cCCCCeEEECCCCCcchhceeEEEEC--CEEEEEeCCcCC----CCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            99999999999999999999999999  999999997521    235678899999999999999999999999887777


Q ss_pred             EccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccc------cCeEEE
Q 014650          231 AEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSR------IGKIVV  304 (421)
Q Consensus       231 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v  304 (421)
                      +.  ++||++||.+...         ...+++++||+.++            +|+.+++++.+  |..      .++||+
T Consensus       147 ~~--~~iyv~GG~~~~~---------~~~~~~~~yd~~~~------------~W~~~~~~p~~--r~~~~~~~~~~~iyv  201 (315)
T 4asc_A          147 HM--DLVYVIGGKGSDR---------KCLNKMCVYDPKKF------------EWKELAPMQTA--RSLFGATVHDGRIIV  201 (315)
T ss_dssp             ET--TEEEEECCBCTTS---------CBCCCEEEEETTTT------------EEEECCCCSSC--CBSCEEEEETTEEEE
T ss_pred             EC--CEEEEEeCCCCCC---------cccceEEEEeCCCC------------eEEECCCCCCc--hhceEEEEECCEEEE
Confidence            65  8999999984432         34455667666665            99999988764  332      379999


Q ss_pred             EccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceee
Q 014650          305 MEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCL  384 (421)
Q Consensus       305 ~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      +||. ++...     .+.+++||+.+++|+.++++|.   +|..++++.++++|||+||.++.....    ........+
T Consensus       202 ~GG~-~~~~~-----~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~----~~~~~~~~~  268 (315)
T 4asc_A          202 AAGV-TDTGL-----TSSAEVYSITDNKWAPFEAFPQ---ERSSLSLVSLVGTLYAIGGFATLETES----GELVPTELN  268 (315)
T ss_dssp             EEEE-CSSSE-----EEEEEEEETTTTEEEEECCCSS---CCBSCEEEEETTEEEEEEEEEEEECTT----SCEEEEEEE
T ss_pred             Eecc-CCCCc-----cceEEEEECCCCeEEECCCCCC---cccceeEEEECCEEEEECCccccCcCC----ccccccccC
Confidence            9997 33321     2689999999999999998886   568899999999999999986421000    000013457


Q ss_pred             EEEEEeCCcceeeEecccCCCCCCCCccceeEEEee
Q 014650          385 FIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVR  420 (421)
Q Consensus       385 ~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~~~  420 (421)
                      ++++||+++++|+.+.     +.++..++++++.-+
T Consensus       269 ~v~~yd~~~~~W~~~~-----~~~r~~~~~~~~~~~  299 (315)
T 4asc_A          269 DIWRYNEEEKKWEGVL-----REIAYAAGATFLPVR  299 (315)
T ss_dssp             EEEEEETTTTEEEEEE-----SCSSCCSSCEEEEEE
T ss_pred             cEEEecCCCChhhhhc-----cCCcCccceEEeCCE
Confidence            8999999999999983     333666777766543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.2e-41  Score=317.32  Aligned_cols=290  Identities=20%  Similarity=0.335  Sum_probs=221.9

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      .++.+|++|+.    ++++|||.+++|.. ++++.+   .+|.+|+++..+++|||+||...+...   ......+.+++
T Consensus        14 ~~~~i~~~GG~----~~~~yd~~~~~W~~-~~~~~~---~~r~~~~~~~~~~~lyv~GG~~~~~~~---~~~~~~~~~~~   82 (318)
T 2woz_A           14 VKDLILLVNDT----AAVAYDPMENECYL-TALAEQ---IPRNHSSIVTQQNQVYVVGGLYVDEEN---KDQPLQSYFFQ   82 (318)
T ss_dssp             EEEEEEEECSS----EEEEEETTTTEEEE-EEECTT---SCSSEEEEECSSSCEEEEESSCC----------CCCBEEEE
T ss_pred             ecchhhhcccc----ceEEECCCCCceec-ccCCcc---CCccceEEEEECCEEEEECCcccCccc---cCCCccccEEE
Confidence            45688999884    38999999999998 455543   458999999999999999996422110   00123456999


Q ss_pred             EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEE
Q 014650          150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGF  229 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~  229 (421)
                      ||+.+++|+.+++||.+|..|++++++  ++|||+||....     .....+++++||+.+++|+.++++|.+|..|+++
T Consensus        83 ~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  155 (318)
T 2woz_A           83 LDNVSSEWVGLPPLPSARCLFGLGEVD--DKIYVVAGKDLQ-----TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVI  155 (318)
T ss_dssp             EETTTTEEEECSCBSSCBCSCEEEEET--TEEEEEEEEBTT-----TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEE
T ss_pred             EeCCCCcEEECCCCCccccccceEEEC--CEEEEEcCccCC-----CCcccceEEEEeCCCCCEeECCCCCCcccccEEE
Confidence            999999999999999999999999999  999999997521     3456889999999999999999999999988777


Q ss_pred             EEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccc------cCeEE
Q 014650          230 VAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSR------IGKIV  303 (421)
Q Consensus       230 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~  303 (421)
                      +..  ++||++||.+...         ...+++++||+.++            +|+.+++++.+  |..      .++||
T Consensus       156 ~~~--~~iyv~GG~~~~~---------~~~~~~~~yd~~~~------------~W~~~~~~p~~--r~~~~~~~~~~~iy  210 (318)
T 2woz_A          156 SHN--GMIYCLGGKTDDK---------KCTNRVFIYNPKKG------------DWKDLAPMKTP--RSMFGVAIHKGKIV  210 (318)
T ss_dssp             EET--TEEEEECCEESSS---------CBCCCEEEEETTTT------------EEEEECCCSSC--CBSCEEEEETTEEE
T ss_pred             EEC--CEEEEEcCCCCCC---------CccceEEEEcCCCC------------EEEECCCCCCC--cccceEEEECCEEE
Confidence            754  8999999985432         33455667666665            99999988764  332      37999


Q ss_pred             EEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccccccccccccee
Q 014650          304 VMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGC  383 (421)
Q Consensus       304 v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~  383 (421)
                      ++||. ++..     ..+.+++||+.+++|+.++++|.   +|..++++.++++|||+||.+......   + .......
T Consensus       211 v~GG~-~~~~-----~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~~---~-~~~~~~~  277 (318)
T 2woz_A          211 IAGGV-TEDG-----LSASVEAFDLKTNKWEVMTEFPQ---ERSSISLVSLAGSLYAIGGFAMIQLES---K-EFAPTEV  277 (318)
T ss_dssp             EEEEE-ETTE-----EEEEEEEEETTTCCEEECCCCSS---CCBSCEEEEETTEEEEECCBCCBC--------CCBCCBC
T ss_pred             EEcCc-CCCC-----ccceEEEEECCCCeEEECCCCCC---cccceEEEEECCEEEEECCeeccCCCC---c-eecccee
Confidence            99997 3322     12689999999999999998887   568899999999999999986532100   0 0001234


Q ss_pred             eEEEEEeCCcceeeEecccCCCCCCCCccceeEEEee
Q 014650          384 LFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCTVR  420 (421)
Q Consensus       384 ~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~~~  420 (421)
                      .++++||+++++|+++     ++.++..++++++.-+
T Consensus       278 ~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~~~~  309 (318)
T 2woz_A          278 NDIWKYEDDKKEWAGM-----LKEIRYASGASCLATR  309 (318)
T ss_dssp             CCEEEEETTTTEEEEE-----ESCCGGGTTCEEEEEE
T ss_pred             eeEEEEeCCCCEehhh-----cccccccccceeeCCE
Confidence            6899999999999998     2445677777777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.4e-37  Score=297.11  Aligned_cols=288  Identities=11%  Similarity=0.135  Sum_probs=208.0

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCC--CCcEEECCCCC-CCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAA--NRACRPLPPLP-CNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~--~~~W~~l~~l~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      ...+..||++||.. .+++++||+.  +++|+.+++|| .+     |.+|++++++++|||+||......    +....+
T Consensus        16 ~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~-----R~~~~~~~~~~~lyv~GG~~~~~~----~~~~~~   85 (357)
T 2uvk_A           16 AIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGP-----RDQATSAFIDGNLYVFGGIGKNSE----GLTQVF   85 (357)
T ss_dssp             EEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCC-----CBSCEEEEETTEEEEECCEEECTT----SCEEEC
T ss_pred             EEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCc-----CccceEEEECCEEEEEcCCCCCCC----ccceee
Confidence            34478899998843 3579999998  49999999999 55     899999999999999999822000    011357


Q ss_pred             CeEEEEeCccCceeeccccC-CCccceEEEEEccCCEEEEEcCCccccc------------------------c---CCC
Q 014650          145 DSAFRFNFLTFSWERIAPMI-SPRGSFACAAVRSLNQIIVAGGGSRHSL------------------------F---GAA  196 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~~~iyv~GG~~~~~~------------------------~---~~~  196 (421)
                      +++++||+.+++|+++++|+ .+|..|++++++  ++|||+||.+....                        +   ...
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN--GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEEET--TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEEEC--CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence            89999999999999999998 889999999998  99999999753200                        0   000


Q ss_pred             CCccceEEEEECCCCceEECCCCCCCCCC-eeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPRFRAG-CVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD  275 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~  275 (421)
                      ...++++++||+.+++|+.++++|.++.. +++++. + ++||++||.+...         ...+++++||+        
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~-~~iyv~GG~~~~~---------~~~~~v~~~d~--------  224 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-G-DKTWLINGEAKPG---------LRTDAVFELDF--------  224 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-T-TEEEEECCEEETT---------EECCCEEEEEC--------
T ss_pred             cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-C-CEEEEEeeecCCC---------cccCceEEEEe--------
Confidence            02468999999999999999999987665 555544 4 8999999976443         23344556653        


Q ss_pred             CCCCCCCCceEecCccccccccc------cCeEEEEccccC-CCce------EE----EecCCceEEEeCCCCceeEecc
Q 014650          276 HDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENR-GRPE------VF----MLDKFDILRYDMGLNRWLKETT  338 (421)
Q Consensus       276 ~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~-g~~~------~~----~~~~~~v~~yd~~~~~W~~~~~  338 (421)
                        |+++++|+.++.++.+..+..      .++||++||... +...      .|    ......+++||+.+++|+++++
T Consensus       225 --d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  302 (357)
T 2uvk_A          225 --TGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE  302 (357)
T ss_dssp             --C---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred             --cCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence              234459999998876433322      278999999621 0000      00    0011478999999999999999


Q ss_pred             cCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC
Q 014650          339 IPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP  403 (421)
Q Consensus       339 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p  403 (421)
                      +|.   +|..++++.++++|||+||.++..            ...++|+.|+.++++|.+...+|
T Consensus       303 ~p~---~r~~~~~~~~~~~i~v~GG~~~~~------------~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          303 LSQ---GRAYGVSLPWNNSLLIIGGETAGG------------KAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             CSS---CCBSSEEEEETTEEEEEEEECGGG------------CEEEEEEEEEC-CCSCEEEC---
T ss_pred             CCC---CcccceeEEeCCEEEEEeeeCCCC------------CEeeeEEEEEEcCcEeEeeeccc
Confidence            887   468889999999999999987433            33579999999999999987655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=282.61  Aligned_cols=262  Identities=19%  Similarity=0.260  Sum_probs=206.6

Q ss_pred             hhHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCC---CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEE
Q 014650           40 HQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD---PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTS  116 (421)
Q Consensus        40 ~~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~  116 (421)
                      ++..+....++|..+...|. .+........++.+|++||.   ...+++++||+.+++|+.+++||.+     |..|++
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~  104 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPS-RRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR-----RSTLGA  104 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC-----CBSCEE
T ss_pred             cEEEEcCcCCcEeEcccCCc-ccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc-----ccceEE
Confidence            34456666778988864443 12222334457889999883   3567899999999999999999965     899999


Q ss_pred             EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650          117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA  196 (421)
Q Consensus       117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  196 (421)
                      ++++++|||+||.+..         ..++++++||+.+++|+.+++||.+|..|++++++  ++||++||.+..     .
T Consensus       105 ~~~~~~iyv~GG~~~~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~-----~  168 (302)
T 2xn4_A          105 AVLNGLLYAVGGFDGS---------TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG--GLLYAVGGYDVA-----S  168 (302)
T ss_dssp             EEETTEEEEEEEECSS---------CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEECCEETT-----T
T ss_pred             EEECCEEEEEcCCCCC---------ccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC--CEEEEEeCCCCC-----C
Confidence            9999999999998533         24689999999999999999999999999999999  999999998532     2


Q ss_pred             CCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCC
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDH  276 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~  276 (421)
                      ....+++++||+.+++|+.++++|.+|..|+++++.  ++||++||.++..          ..+++++||++++      
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~----------~~~~~~~yd~~~~------  230 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN--NLLYAVGGHDGPL----------VRKSVEVYDPTTN------  230 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEECCBSSSS----------BCCCEEEEETTTT------
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEEC--CEEEEECCCCCCc----------ccceEEEEeCCCC------
Confidence            245789999999999999999999999988776665  8999999987542          2344666666655      


Q ss_pred             CCCCCCCceEecCccccccccc------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEec-ccCCCCCCCCce
Q 014650          277 DDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKET-TIPEIRPCKKPL  349 (421)
Q Consensus       277 yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~r~~~  349 (421)
                            +|+.++.++.+  |..      .++||++||. ++..     ...++++||+++++|+.++ .|+.   +|..+
T Consensus       231 ------~W~~~~~~~~~--r~~~~~~~~~~~i~v~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~~~~---~r~~~  293 (302)
T 2xn4_A          231 ------AWRQVADMNMC--RRNAGVCAVNGLLYVVGGD-DGSC-----NLASVEYYNPTTDKWTVVSSCMST---GRSYA  293 (302)
T ss_dssp             ------EEEEECCCSSC--CBSCEEEEETTEEEEECCB-CSSS-----BCCCEEEEETTTTEEEECSSCCSS---CCBSC
T ss_pred             ------CEeeCCCCCCc--cccCeEEEECCEEEEECCc-CCCc-----ccccEEEEcCCCCeEEECCcccCc---ccccc
Confidence                  99999988764  322      3789999997 3332     2378999999999999997 7776   57889


Q ss_pred             EEEEeCCeE
Q 014650          350 GFIVLDGEL  358 (421)
Q Consensus       350 ~~~~~~~~l  358 (421)
                      ++++++++|
T Consensus       294 ~~~~~~~~i  302 (302)
T 2xn4_A          294 GVTVIDKRL  302 (302)
T ss_dssp             EEEEEEC--
T ss_pred             eEEEecccC
Confidence            999998875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.6e-36  Score=285.28  Aligned_cols=269  Identities=17%  Similarity=0.247  Sum_probs=206.3

Q ss_pred             HHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCCC---------CCCccEEEeCCCCcEEECCCCCCCCCCCCCc
Q 014650           42 SRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP---------SISSPFLFDAANRACRPLPPLPCNPSTYSLC  112 (421)
Q Consensus        42 ~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~  112 (421)
                      ..+....++|..........+........++.+|++||..         ..++++.||+.+++|+.+++||.+     |.
T Consensus        27 ~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~  101 (318)
T 2woz_A           27 VAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-----RC  101 (318)
T ss_dssp             EEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-----BC
T ss_pred             EEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-----cc
Confidence            4456667788763222112222233455677788888721         122388999999999999999976     89


Q ss_pred             ceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          113 NFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      .|++++++++|||+||......       ..++++++||+.+++|+.++++|.+|..|++++++  ++||++||..    
T Consensus       102 ~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~----  168 (318)
T 2woz_A          102 LFGLGEVDDKIYVVAGKDLQTE-------ASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHN--GMIYCLGGKT----  168 (318)
T ss_dssp             SCEEEEETTEEEEEEEEBTTTC-------CEEEEEEEEETTTTEEEEECCCSSCEESCEEEEET--TEEEEECCEE----
T ss_pred             ccceEEECCEEEEEcCccCCCC-------cccceEEEEeCCCCCEeECCCCCCcccccEEEEEC--CEEEEEcCCC----
Confidence            9999999999999999863221       35789999999999999999999999999999999  9999999975    


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCC
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKK  272 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~  272 (421)
                        ......+++++||+.+++|+.++++|.+|..|+++++.  ++||++||.+..          ...+++++||++++  
T Consensus       169 --~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~----------~~~~~~~~yd~~~~--  232 (318)
T 2woz_A          169 --DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK--GKIVIAGGVTED----------GLSASVEAFDLKTN--  232 (318)
T ss_dssp             --SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEEEEEETT----------EEEEEEEEEETTTC--
T ss_pred             --CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC--CEEEEEcCcCCC----------CccceEEEEECCCC--
Confidence              23456889999999999999999999999888776665  899999998664          23445666666665  


Q ss_pred             cCCCCCCCCCCceEecCccccccccc------cCeEEEEccccCCCc----eEEEecCCceEEEeCCCCceeEecccCCC
Q 014650          273 TDDHDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRP----EVFMLDKFDILRYDMGLNRWLKETTIPEI  342 (421)
Q Consensus       273 ~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~----~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  342 (421)
                                +|+.++++|.+  |..      .++||++||. ++..    ........++++||+++++|+++  ++. 
T Consensus       233 ----------~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~-  296 (318)
T 2woz_A          233 ----------KWEVMTEFPQE--RSSISLVSLAGSLYAIGGF-AMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKE-  296 (318)
T ss_dssp             ----------CEEECCCCSSC--CBSCEEEEETTEEEEECCB-CCBC----CCBCCBCCCEEEEETTTTEEEEE--ESC-
T ss_pred             ----------eEEECCCCCCc--ccceEEEEECCEEEEECCe-eccCCCCceeccceeeeEEEEeCCCCEehhh--ccc-
Confidence                      99999988864  332      3799999997 2211    00001247899999999999999  554 


Q ss_pred             CCCCCceEEEEeCCeEEEEE
Q 014650          343 RPCKKPLGFIVLDGELYVMT  362 (421)
Q Consensus       343 ~~~r~~~~~~~~~~~lyv~G  362 (421)
                        .|..++++.++++|||+.
T Consensus       297 --~r~~~~~~~~~~~iyi~~  314 (318)
T 2woz_A          297 --IRYASGASCLATRLNLFK  314 (318)
T ss_dssp             --CGGGTTCEEEEEEEEGGG
T ss_pred             --ccccccceeeCCEEEEEE
Confidence              568889999999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=285.55  Aligned_cols=270  Identities=19%  Similarity=0.270  Sum_probs=206.7

Q ss_pred             HHHHhhhHhHHhhhcCCc-ccccccccccCCceEEEeCCC-----C----CCCccEEEeCCCCcEEECCCCCCCCCCCCC
Q 014650           42 SRLKQTCRSWFLFFSSRT-LVFDRHKFNSQSDLLCIFPQD-----P----SISSPFLFDAANRACRPLPPLPCNPSTYSL  111 (421)
Q Consensus        42 ~~~~~v~k~W~~l~~~~~-~~~~~~~~~~~~~~~~~~g~~-----~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r  111 (421)
                      ..+....++|.. ...+. ..+..+.....++.+|++||.     .    ..+++++||+.+++|+.++++|.+     |
T Consensus        16 ~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r   89 (315)
T 4asc_A           16 VAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-----R   89 (315)
T ss_dssp             EEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC-----E
T ss_pred             EEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc-----h
Confidence            345556777875 33222 122223345567778888872     1    123489999999999999999965     8


Q ss_pred             cceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCcccc
Q 014650          112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHS  191 (421)
Q Consensus       112 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~  191 (421)
                      .+|++++++++|||+||.+...      .....+++++||+.+++|+.++++|.+|..|++++++  ++|||+||..   
T Consensus        90 ~~~~~~~~~~~lyv~GG~~~~~------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~---  158 (315)
T 4asc_A           90 CLFGLGEALNSIYVVGGREIKD------GERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM--DLVYVIGGKG---  158 (315)
T ss_dssp             ESCEEEEETTEEEEECCEESST------TCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBC---
T ss_pred             hceeEEEECCEEEEEeCCcCCC------CCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC--CEEEEEeCCC---
Confidence            9999999999999999976321      1136789999999999999999999999999999999  9999999974   


Q ss_pred             ccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccC
Q 014650          192 LFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKK  271 (421)
Q Consensus       192 ~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~  271 (421)
                         ......+++++||+.+++|+.++++|.+|..|+++++.  ++||++||.+...          ..+++++||++++ 
T Consensus       159 ---~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~----------~~~~~~~yd~~~~-  222 (315)
T 4asc_A          159 ---SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD--GRIIVAAGVTDTG----------LTSSAEVYSITDN-  222 (315)
T ss_dssp             ---TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEEEEECSSS----------EEEEEEEEETTTT-
T ss_pred             ---CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC--CEEEEEeccCCCC----------ccceEEEEECCCC-
Confidence               23466889999999999999999999999988877765  8999999987653          3345666666665 


Q ss_pred             CcCCCCCCCCCCceEecCccccccccc------cCeEEEEccccCC----CceEEEecCCceEEEeCCCCceeEecccCC
Q 014650          272 KTDDHDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRG----RPEVFMLDKFDILRYDMGLNRWLKETTIPE  341 (421)
Q Consensus       272 ~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g----~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~  341 (421)
                                 +|+.+++++.+  |..      .++||++||.. +    .........+++++||+++++|+.+  ++.
T Consensus       223 -----------~W~~~~~~p~~--r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~  286 (315)
T 4asc_A          223 -----------KWAPFEAFPQE--RSSLSLVSLVGTLYAIGGFA-TLETESGELVPTELNDIWRYNEEEKKWEGV--LRE  286 (315)
T ss_dssp             -----------EEEEECCCSSC--CBSCEEEEETTEEEEEEEEE-EEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESC
T ss_pred             -----------eEEECCCCCCc--ccceeEEEECCEEEEECCcc-ccCcCCccccccccCcEEEecCCCChhhhh--ccC
Confidence                       99999988764  332      37999999972 1    1111111236899999999999999  333


Q ss_pred             CCCCCCceEEEEeCCeEEEEEe
Q 014650          342 IRPCKKPLGFIVLDGELYVMTV  363 (421)
Q Consensus       342 ~~~~r~~~~~~~~~~~lyv~GG  363 (421)
                         +|..+++++++++||++..
T Consensus       287 ---~r~~~~~~~~~~~l~v~~~  305 (315)
T 4asc_A          287 ---IAYAAGATFLPVRLNVLRL  305 (315)
T ss_dssp             ---SSCCSSCEEEEEEECGGGS
T ss_pred             ---CcCccceEEeCCEEEEEEe
Confidence               4678889999999999864

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=7.4e-36  Score=279.45  Aligned_cols=258  Identities=21%  Similarity=0.287  Sum_probs=206.3

Q ss_pred             cchhHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCC-------CCCCccEEEeCCCCcEEECCCCCCCCCCCC
Q 014650           38 YSHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD-------PSISSPFLFDAANRACRPLPPLPCNPSTYS  110 (421)
Q Consensus        38 ~~~~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~  110 (421)
                      ..++..+....++|..+...|. .+........++.+|++||.       ...+++++||+.+++|+.+++||.+     
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----  111 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-----  111 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-----
T ss_pred             cceEEEEcCCCCeEeECCCCCc-ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC-----
Confidence            3456667777889998854443 22222344557889999884       2467899999999999999999865     


Q ss_pred             CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccc
Q 014650          111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRH  190 (421)
Q Consensus       111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  190 (421)
                      |..|++++++++|||+||.+..         ..++++++||+.+++|+.++++|.+|..|++++++  ++||++||.+. 
T Consensus       112 r~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~-  179 (308)
T 1zgk_A          112 RNRIGVGVIDGHIYAVGGSHGC---------IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN--RLLYAVGGFDG-  179 (308)
T ss_dssp             CBTCEEEEETTEEEEECCEETT---------EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBCS-
T ss_pred             ccccEEEEECCEEEEEcCCCCC---------cccccEEEECCCCCeEeECCCCCccccceEEEEEC--CEEEEEeCCCC-
Confidence            8999999999999999998543         24688999999999999999999999999999998  99999999862 


Q ss_pred             cccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhcc
Q 014650          191 SLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKK  270 (421)
Q Consensus       191 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~  270 (421)
                            ....+++++||+.+++|+.++++|.+|..++++++.  ++||++||.++..          ..+++++||++++
T Consensus       180 ------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~----------~~~~v~~yd~~~~  241 (308)
T 1zgk_A          180 ------TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLH--NCIYAAGGYDGQD----------QLNSVERYDVETE  241 (308)
T ss_dssp             ------SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBCSSS----------BCCCEEEEETTTT
T ss_pred             ------CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEEC--CEEEEEeCCCCCC----------ccceEEEEeCCCC
Confidence                  234889999999999999999999999988777664  8999999987543          2345666666665


Q ss_pred             CCcCCCCCCCCCCceEecCccccccccc------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCC
Q 014650          271 KKTDDHDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRP  344 (421)
Q Consensus       271 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~  344 (421)
                                  +|+.+++++.+  |..      .++||++||. ++..     ...++++||+++++|+++++||.   
T Consensus       242 ------------~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~---  298 (308)
T 1zgk_A          242 ------------TWTFVAPMKHR--RSALGITVHQGRIYVLGGY-DGHT-----FLDSVECYDPDTDTWSEVTRMTS---  298 (308)
T ss_dssp             ------------EEEECCCCSSC--CBSCEEEEETTEEEEECCB-CSSC-----BCCEEEEEETTTTEEEEEEECSS---
T ss_pred             ------------cEEECCCCCCC--ccceEEEEECCEEEEEcCc-CCCc-----ccceEEEEcCCCCEEeecCCCCC---
Confidence                        99999988764  322      3799999997 3332     23789999999999999999987   


Q ss_pred             CCCceEEEEe
Q 014650          345 CKKPLGFIVL  354 (421)
Q Consensus       345 ~r~~~~~~~~  354 (421)
                      +|..++++++
T Consensus       299 ~r~~~~~~~l  308 (308)
T 1zgk_A          299 GRSGVGVAVT  308 (308)
T ss_dssp             CCBSCEEEEC
T ss_pred             CcccceeEeC
Confidence            4678877653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=8.5e-36  Score=278.69  Aligned_cols=264  Identities=16%  Similarity=0.177  Sum_probs=207.4

Q ss_pred             chhHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCC--CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEE
Q 014650           39 SHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD--PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTS  116 (421)
Q Consensus        39 ~~~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~  116 (421)
                      .++..+....++|..+...|. .+........++.+|++||.  ...+++++||+.+++|+.++++|.+     |.+|++
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~   97 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP-----RDSLAA   97 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC-----CBSCEE
T ss_pred             ceEEEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc-----ccceeE
Confidence            445566777888998865543 22222344557789999884  3567899999999999999999865     899999


Q ss_pred             EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650          117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA  196 (421)
Q Consensus       117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  196 (421)
                      ++++++|||+||.+...        ..++++++||+.+++|+.+++||.+|..|++++++  ++||++||.....   ..
T Consensus        98 ~~~~~~iyv~GG~~~~~--------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~---~~  164 (306)
T 3ii7_A           98 CAAEGKIYTSGGSEVGN--------SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN--GLIYVCGGSLGNN---VS  164 (306)
T ss_dssp             EEETTEEEEECCBBTTB--------SCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEECCEESCT---TT
T ss_pred             EEECCEEEEECCCCCCC--------cEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEEC--CEEEEECCCCCCC---Cc
Confidence            99999999999985322        35789999999999999999999999999999999  9999999975320   01


Q ss_pred             CCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCC
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDH  276 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~  276 (421)
                      ....+++++||+++++|+.++++|.+|..|+++++.  ++||++||.+...          ..+++++||+.++      
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~----------~~~~~~~yd~~~~------  226 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVK--DKIFAVGGQNGLG----------GLDNVEYYDIKLN------  226 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEECCEETTE----------EBCCEEEEETTTT------
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEEC--CEEEEEeCCCCCC----------CCceEEEeeCCCC------
Confidence            123889999999999999999999999988777764  8999999986642          3445666666665      


Q ss_pred             CCCCCCCceEecCccccccccc------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceE
Q 014650          277 DDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLG  350 (421)
Q Consensus       277 yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~  350 (421)
                            +|+.+++++.+  +..      .++||++||. ++..     ...++++||+++++|+.+++||.   +|.+++
T Consensus       227 ------~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~-~~~~-----~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~  289 (306)
T 3ii7_A          227 ------EWKMVSPMPWK--GVTVKCAAVGSIVYVLAGF-QGVG-----RLGHILEYNTETDKWVANSKVRA---FPVTSC  289 (306)
T ss_dssp             ------EEEECCCCSCC--BSCCEEEEETTEEEEEECB-CSSS-----BCCEEEEEETTTTEEEEEEEEEC---CSCTTC
T ss_pred             ------cEEECCCCCCC--ccceeEEEECCEEEEEeCc-CCCe-----eeeeEEEEcCCCCeEEeCCCccc---ccceeE
Confidence                  99999988863  332      3789999997 3332     23689999999999999999986   457777


Q ss_pred             EEEeCC
Q 014650          351 FIVLDG  356 (421)
Q Consensus       351 ~~~~~~  356 (421)
                      ++.+.+
T Consensus       290 ~~~~~~  295 (306)
T 3ii7_A          290 LICVVD  295 (306)
T ss_dssp             EEEEEE
T ss_pred             EEEECC
Confidence            766554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=275.40  Aligned_cols=258  Identities=19%  Similarity=0.256  Sum_probs=205.7

Q ss_pred             chhHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCC---CCCCccEEEeCCCCc---EEECCCCCCCCCCCCCc
Q 014650           39 SHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD---PSISSPFLFDAANRA---CRPLPPLPCNPSTYSLC  112 (421)
Q Consensus        39 ~~~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~d~~~~~---W~~l~~l~~~~~~~~r~  112 (421)
                      .++..+....++|..+...|. .+........++.+|++||.   ...+++++||+.+++   |+.++++|.+     |.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~-----r~  104 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR-----RG  104 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC-----CB
T ss_pred             eEEEEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC-----cc
Confidence            345556667888988875444 22222334456788998883   356789999999999   9999999865     89


Q ss_pred             ceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          113 NFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      .|+++..+++|||+||....         ..++++++||+.+++|+.++++|.+|..|++++++  ++||++||.+    
T Consensus       105 ~~~~~~~~~~lyv~GG~~~~---------~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~----  169 (301)
T 2vpj_A          105 LAGATTLGDMIYVSGGFDGS---------RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS--GVIYCLGGYD----  169 (301)
T ss_dssp             SCEEEEETTEEEEECCBCSS---------CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET--TEEEEECCBC----
T ss_pred             ceeEEEECCEEEEEcccCCC---------cccceEEEEcCCCCeEEECCCCCCCcccceEEEEC--CEEEEECCCC----
Confidence            99999999999999998633         24789999999999999999999999999999999  9999999975    


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCC
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKK  272 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~  272 (421)
                         .....+++++||+.+++|+.++++|.+|..|++++..  ++||++||.+...          ..+++++||++++  
T Consensus       170 ---~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~----------~~~~v~~yd~~~~--  232 (301)
T 2vpj_A          170 ---GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLN--DHIYVVGGFDGTA----------HLSSVEAYNIRTD--  232 (301)
T ss_dssp             ---SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--TEEEEECCBCSSS----------BCCCEEEEETTTT--
T ss_pred             ---CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEEC--CEEEEEeCCCCCc----------ccceEEEEeCCCC--
Confidence               2346889999999999999999999999888777665  8999999987643          2344566666665  


Q ss_pred             cCCCCCCCCCCceEecCccccccccc------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCC
Q 014650          273 TDDHDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCK  346 (421)
Q Consensus       273 ~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r  346 (421)
                                +|+.++.++.+  +..      .++||++||. ++..     ....+++||+++++|+.+++||.   +|
T Consensus       233 ----------~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~~~---~r  291 (301)
T 2vpj_A          233 ----------SWTTVTSMTTP--RCYVGATVLRGRLYAIAGY-DGNS-----LLSSIECYDPIIDSWEVVTSMGT---QR  291 (301)
T ss_dssp             ----------EEEEECCCSSC--CBSCEEEEETTEEEEECCB-CSSS-----BEEEEEEEETTTTEEEEEEEEEE---EE
T ss_pred             ----------cEEECCCCCCc--ccceeEEEECCEEEEEcCc-CCCc-----ccccEEEEcCCCCeEEEcCCCCc---cc
Confidence                      99999988764  322      2789999997 3332     12689999999999999999987   45


Q ss_pred             CceEEEEeC
Q 014650          347 KPLGFIVLD  355 (421)
Q Consensus       347 ~~~~~~~~~  355 (421)
                      ..++++.++
T Consensus       292 ~~~~~~~~~  300 (301)
T 2vpj_A          292 CDAGVCVLR  300 (301)
T ss_dssp             ESCEEEEEE
T ss_pred             ccceEEEeC
Confidence            788887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.4e-35  Score=279.83  Aligned_cols=275  Identities=16%  Similarity=0.162  Sum_probs=190.2

Q ss_pred             ECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCc--cCceeeccccC-CCccceEEEE
Q 014650           98 PLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFL--TFSWERIAPMI-SPRGSFACAA  174 (421)
Q Consensus        98 ~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~  174 (421)
                      .+++||.+     |.++++++++++|||+||..             .+++++||+.  +++|+.+++|| .+|..|++++
T Consensus         2 ~l~~lP~~-----r~~~~~~~~~~~iyv~GG~~-------------~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~   63 (357)
T 2uvk_A            2 VLPETPVP-----FKSGTGAIDNDTVYIGLGSA-------------GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF   63 (357)
T ss_dssp             CSCCCSSC-----CCSCEEEEETTEEEEECGGG-------------TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE
T ss_pred             CCCCCCcc-----ccceEEEEECCEEEEEeCcC-------------CCeEEEEccccCCCCeeECCCCCCCcCccceEEE
Confidence            46788865     88888888899999999974             2479999998  49999999999 8999999999


Q ss_pred             EccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC-CCCCCeeEEEEccCCeEEEEeccCCCccccc--
Q 014650          175 VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP-RFRAGCVGFVAEESGEFWVMGGYGDSRTISG--  251 (421)
Q Consensus       175 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~--  251 (421)
                      ++  ++|||+||.....  ......++++++||+.+++|+.+++|+ .+|..|++++..  ++||++||.+.......  
T Consensus        64 ~~--~~lyv~GG~~~~~--~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~  137 (357)
T 2uvk_A           64 ID--GNLYVFGGIGKNS--EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN--GKAYVTGGVNQNIFNGYFE  137 (357)
T ss_dssp             ET--TEEEEECCEEECT--TSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEET--TEEEEEECCCHHHHHHHHH
T ss_pred             EC--CEEEEEcCCCCCC--CccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEEC--CEEEEEeCcCCCcCccccc
Confidence            99  9999999972100  012355889999999999999999998 889888777744  89999999864320000  


Q ss_pred             -c---------------------ccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc-c----ccCeEEE
Q 014650          252 -V---------------------LPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER-S----RIGKIVV  304 (421)
Q Consensus       252 -~---------------------~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~----~~g~i~v  304 (421)
                       +                     .....+.+++++|            |+.+++|+.+++++.+... .    ..++||+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y------------d~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv  205 (357)
T 2uvk_A          138 DLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF------------DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWL  205 (357)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE------------ETTTTEEEEEEECSSCCCBSCEEEEETTEEEE
T ss_pred             chhhcCCcccchhhhhhhhccccccccCCcccEEEE------------eCCCCcEEECCCCCCCCcccccEEEECCEEEE
Confidence             0                     0000012334454            5555599999888753111 1    1278999


Q ss_pred             EccccCCCceEEEecCCceEEEeC--CCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccc---c-cccc
Q 014650          305 MEDENRGRPEVFMLDKFDILRYDM--GLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETR---R-SQQH  378 (421)
Q Consensus       305 ~GG~~~g~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~---~-~~~~  378 (421)
                      +||. ++..    ....+++.||+  .+++|+++.+|+.++ .|..++++.++++|||+||.+........   . +...
T Consensus       206 ~GG~-~~~~----~~~~~v~~~d~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          206 INGE-AKPG----LRTDAVFELDFTGNNLKWNKLAPVSSPD-GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             ECCE-EETT----EECCCEEEEECC---CEEEECCCSSTTT-CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             Eeee-cCCC----cccCceEEEEecCCCCcEEecCCCCCCc-ccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            9997 2221    13478888976  999999999987654 56778899999999999997543200000   0 0000


Q ss_pred             ccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          379 KRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       379 ~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                      ......++++||+++++|+.++.+|   .+|..++++++
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~  315 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELS---QGRAYGVSLPW  315 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECS---SCCBSSEEEEE
T ss_pred             cccceeeEEEEecCCCceeeCCCCC---CCcccceeEEe
Confidence            1123367999999999999987655   45666766654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=4.5e-32  Score=279.86  Aligned_cols=270  Identities=9%  Similarity=0.023  Sum_probs=198.7

Q ss_pred             CCceEEEeCCC--CCCCccEEEeCCCCcEEECC-CCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCC
Q 014650           70 QSDLLCIFPQD--PSISSPFLFDAANRACRPLP-PLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        70 ~~~~~~~~g~~--~~~~~~~~~d~~~~~W~~l~-~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      .++.+|++||.  ...+++++||+.+++|+.++ ++|......+|.+|+++++  +++|||+||.+...        ..+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~--------~~~  467 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH--------QGL  467 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT--------CBC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC--------Ccc
Confidence            56778999884  35678999999999999998 6331111145999999999  99999999986433        257


Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEE-ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC---CC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE---MP  220 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~  220 (421)
                      +++|+||+.+++|+.+++||.+|..|+++++ +  ++|||+||.+..       .   ++++||+.+++|+.+++   +|
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~-------~---~v~~yd~~t~~W~~~~~~g~~p  535 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEG-------P---AMLLYNVTEEIFKDVTPKDEFF  535 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSS-------C---SEEEEETTTTEEEECCCSSGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCC-------C---CEEEEECCCCceEEccCCCCCC
Confidence            8999999999999999999999999999997 7  999999998522       1   89999999999999987   89


Q ss_pred             CCCCCeeEEEEccC-CeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCC------ceEecCcccc
Q 014650          221 RFRAGCVGFVAEES-GEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGT------WREVGDMWDE  293 (421)
Q Consensus       221 ~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~------W~~~~~~~~~  293 (421)
                      .+|..|+++++..+ ++||++||......        ...+++++||+.++            +      |+.+..++..
T Consensus       536 ~~r~~~~a~v~~~~~~~iyv~GG~~~~~~--------~~~~~v~~yd~~~~------------~w~~~~~W~~~~~~p~~  595 (695)
T 2zwa_A          536 QNSLVSAGLEFDPVSKQGIILGGGFMDQT--------TVSDKAIIFKYDAE------------NATEPITVIKKLQHPLF  595 (695)
T ss_dssp             GSCCBSCEEEEETTTTEEEEECCBCTTSS--------CBCCEEEEEEECTT------------CSSCCEEEEEEEECGGG
T ss_pred             CcccceeEEEEeCCCCEEEEECCcCCCCC--------eeeCcEEEEEccCC------------ccccceEEEEcCCCCCC
Confidence            99998887776644 78999999855431        33455777777766            8      8988775321


Q ss_pred             cccc------cc-CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCC-----CCCCCceEEEEeCC-eEEE
Q 014650          294 WERS------RI-GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEI-----RPCKKPLGFIVLDG-ELYV  360 (421)
Q Consensus       294 ~~~~------~~-g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-----~~~r~~~~~~~~~~-~lyv  360 (421)
                       +|.      .. ++||++||. ++....  ...+++++||+.+++|+.+. +|..     ...+.+++++.+++ +|||
T Consensus       596 -~R~~~~~~~~~~~~iyv~GG~-~~~~~~--~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v  670 (695)
T 2zwa_A          596 -QRYGSQIKYITPRKLLIVGGT-SPSGLF--DRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFSLVSTSMGTIHI  670 (695)
T ss_dssp             -CCBSCEEEEEETTEEEEECCB-CSSCCC--CTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCEEECC---CEEE
T ss_pred             -CcccceEEEeCCCEEEEECCc-cCCCCC--CCCCeEEEEECCCCeEEEee-ccccccCCCCccceeeeEEEeCCCEEEE
Confidence             232      23 799999997 322110  12478999999999999653 3221     12456788888776 9999


Q ss_pred             EEeecCCCccccccccccccceeeEEEEEeCCc
Q 014650          361 MTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK  393 (421)
Q Consensus       361 ~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~  393 (421)
                      +||....-.+         +...+.++.+|..+
T Consensus       671 ~GGg~~cfsf---------Gt~~n~i~~ldl~~  694 (695)
T 2zwa_A          671 IGGGATCYGF---------GSVTNVGLKLIAIA  694 (695)
T ss_dssp             ECCEEECTTS---------CEEECCCEEEEECC
T ss_pred             EeCCccCcCc---------cccccceEEEEEEc
Confidence            9996432111         12234677777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.98  E-value=3.5e-31  Score=273.27  Aligned_cols=241  Identities=12%  Similarity=0.111  Sum_probs=183.6

Q ss_pred             CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc-c-----cCCCc
Q 014650           94 RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA-P-----MISPR  167 (421)
Q Consensus        94 ~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~-~-----~~~~r  167 (421)
                      .+|...+..|.     .|.+++ ++.+++|||+||...          ...+++++||+.+++|+.++ +     ||.+|
T Consensus       377 ~~~~~~~~~p~-----rr~g~~-~~~~~~iyv~GG~~~----------~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R  440 (695)
T 2zwa_A          377 YQLLECECPIN-----RKFGDV-DVAGNDVFYMGGSNP----------YRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR  440 (695)
T ss_dssp             EEEEECCCTTC-----CBSCEE-EECSSCEEEECCBSS----------SBCCCEEEEEECSSCEEEEECCCCCSCCCCCC
T ss_pred             eeEeccCCCCC-----CceeEE-EEECCEEEEECCCCC----------CCcCcEEEEECCCCeEEEeccCCCCCCCCccc
Confidence            34555544443     255544 448999999999754          24688999999999999998 6     78999


Q ss_pred             cceEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          168 GSFACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       168 ~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      .+|+++++  +  ++|||+||.+.      ....++++++||+.+++|+.+++||.+|..|+++++.+ ++|||+||.+.
T Consensus       441 ~~hs~~~~~~~--~~lyv~GG~~~------~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~-~~iyv~GG~~~  511 (695)
T 2zwa_A          441 MCHTFTTISRN--NQLLLIGGRKA------PHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD-GNVLILGGVTE  511 (695)
T ss_dssp             BSCEEEEETTT--TEEEEECCBSS------TTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT-SCEEEECCBCS
T ss_pred             cceEEEEEccC--CEEEEEcCCCC------CCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC-CEEEEECCCCC
Confidence            99999999  8  99999999863      23368899999999999999999999999998877644 89999999865


Q ss_pred             CccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecC---ccccccccc----c---CeEEEEccccCCCceE
Q 014650          246 SRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGD---MWDEWERSR----I---GKIVVMEDENRGRPEV  315 (421)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~---~~~~~~~~~----~---g~i~v~GG~~~g~~~~  315 (421)
                      ..             ++++||+.++            +|+.++.   +|.+.....    .   ++||++||.. .... 
T Consensus       512 ~~-------------~v~~yd~~t~------------~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~-~~~~-  564 (695)
T 2zwa_A          512 GP-------------AMLLYNVTEE------------IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF-MDQT-  564 (695)
T ss_dssp             SC-------------SEEEEETTTT------------EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBC-TTSS-
T ss_pred             CC-------------CEEEEECCCC------------ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcC-CCCC-
Confidence            42             3555555555            9999986   554321111    2   6799999973 2110 


Q ss_pred             EEecCCceEEEeCCCCc------eeEecccCCCCCCCCceEEEEeC-CeEEEEEeecCCCccccccccccccceeeEEEE
Q 014650          316 FMLDKFDILRYDMGLNR------WLKETTIPEIRPCKKPLGFIVLD-GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQI  388 (421)
Q Consensus       316 ~~~~~~~v~~yd~~~~~------W~~~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~  388 (421)
                        ...+++++||+.+++      |+.+.++|.  .+|.+++++.++ ++|||+||.++...          ....+++++
T Consensus       565 --~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~--~~R~~~~~~~~~~~~iyv~GG~~~~~~----------~~~~~~v~~  630 (695)
T 2zwa_A          565 --TVSDKAIIFKYDAENATEPITVIKKLQHPL--FQRYGSQIKYITPRKLLIVGGTSPSGL----------FDRTNSIIS  630 (695)
T ss_dssp             --CBCCEEEEEEECTTCSSCCEEEEEEEECGG--GCCBSCEEEEEETTEEEEECCBCSSCC----------CCTTTSEEE
T ss_pred             --eeeCcEEEEEccCCccccceEEEEcCCCCC--CCcccceEEEeCCCEEEEECCccCCCC----------CCCCCeEEE
Confidence              123789999999999      899987642  367899999999 99999999865431          012368999


Q ss_pred             EeCCcceeeEec
Q 014650          389 YHPRKKTWRYIF  400 (421)
Q Consensus       389 yd~~~~~W~~i~  400 (421)
                      ||+++++|+.+.
T Consensus       631 yd~~t~~W~~~~  642 (695)
T 2zwa_A          631 LDPLSETLTSIP  642 (695)
T ss_dssp             EETTTTEEEECC
T ss_pred             EECCCCeEEEee
Confidence            999999999654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.97  E-value=6.3e-32  Score=278.24  Aligned_cols=311  Identities=13%  Similarity=0.082  Sum_probs=211.5

Q ss_pred             HHhhhHhHHhhhcCCcccccccccccCCceEEEeCCCC---------CCCccEEEeCCCCcEEECCCCCCCCCCCCCcce
Q 014650           44 LKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP---------SISSPFLFDAANRACRPLPPLPCNPSTYSLCNF  114 (421)
Q Consensus        44 ~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~  114 (421)
                      +.....+|..+...|.. ..+......+..+|++||..         ..+.+++||+.+++|+.++.|+.+     |..+
T Consensus       171 ~dp~~~~W~~~~~~P~~-~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-----~~~~  244 (656)
T 1k3i_A          171 PQPGLGRWGPTIDLPIV-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-----HDMF  244 (656)
T ss_dssp             CCTTSCEEEEEEECSSC-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-----CCCS
T ss_pred             CCCCCCeeeeeccCCCC-ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-----CCCc
Confidence            34456788877766551 11111222267788887632         123688999999999999888765     4333


Q ss_pred             --EEE-EeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEE-ccCCEEEEEcCCccc
Q 014650          115 --TSI-SLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGSRH  190 (421)
Q Consensus       115 --~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~~  190 (421)
                        +++ ..+++||++||..             ..++++||+.+++|+.+++|+.+|..|+++++ +  ++|||+||..  
T Consensus       245 ~~~~~~~~~g~lyv~GG~~-------------~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d--g~iyv~GG~~--  307 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGND-------------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--GRVFTIGGSW--  307 (656)
T ss_dssp             SCEEEECTTSCEEEECSSS-------------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--SCEEEECCCC--
T ss_pred             cccccCCCCCCEEEeCCCC-------------CCceEEecCcCCceeECCCCCccccccceEEecC--CeEEEEeCcc--
Confidence              333 4589999999963             23699999999999999999999999999999 7  9999999953  


Q ss_pred             cccCCCCCccceEEEEECCCCceEEC-----CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheeh
Q 014650          191 SLFGAAGSRISSVERYDVAKNEWVSM-----DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVM  265 (421)
Q Consensus       191 ~~~~~~~~~~~~~~~yd~~t~~W~~~-----~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~y  265 (421)
                          ++....+++|+||+++++|+.+     .+|+..+..  +++..+ +++|++||.++.....      ...+.++.|
T Consensus       308 ----~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~--~~~~~~-~~iyv~Gg~~g~~~~~------~~~~~v~~y  374 (656)
T 1k3i_A          308 ----SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ--GLYRSD-NHAWLFGWKKGSVFQA------GPSTAMNWY  374 (656)
T ss_dssp             ----CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--GGGTTT-CSCCEEECGGGCEEEC------CSSSEEEEE
T ss_pred             ----cCCcccccceEeCCCCCcceeCCCcccccccccccc--ceeecC-CceEEEECCCCcEEEe------cCccceeee
Confidence                2344678999999999999997     445555532  333344 8999999987643110      012234444


Q ss_pred             hhhccCCcCCCCCCCCCCceEecCcccc----------ccc----cccCeEEEEcccc--CCCceEEEecCCceEEEeCC
Q 014650          266 QLKKKKKTDDHDDGDRGTWREVGDMWDE----------WER----SRIGKIVVMEDEN--RGRPEVFMLDKFDILRYDMG  329 (421)
Q Consensus       266 d~~~~~~~~~~yd~~~~~W~~~~~~~~~----------~~~----~~~g~i~v~GG~~--~g~~~~~~~~~~~v~~yd~~  329 (421)
                                  |+++++|.........          ...    ...++||++||..  ++....  -....+++||+.
T Consensus       375 ------------d~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~--~~~~~v~~yd~~  440 (656)
T 1k3i_A          375 ------------YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT--TNAHIITLGEPG  440 (656)
T ss_dssp             ------------ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC--CCEEEEECCSTT
T ss_pred             ------------ecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC--CcceEEEcCCCC
Confidence                        5555598754322110          011    1248999999962  111110  011268899999


Q ss_pred             CCceeEec--ccCCCCCCCCceEEEEe-CCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCCCC
Q 014650          330 LNRWLKET--TIPEIRPCKKPLGFIVL-DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFP  406 (421)
Q Consensus       330 ~~~W~~~~--~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~  406 (421)
                      +++|+++.  .||.   +|..++++.+ +++|||+||.+.....       .......++++||+++++|+.++.   ++
T Consensus       441 ~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~-------~~~~~~~~v~~ydp~t~~W~~~~~---~~  507 (656)
T 1k3i_A          441 TSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPF-------EDSTPVFTPEIYVPEQDTFYKQNP---NS  507 (656)
T ss_dssp             SCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTT-------CCCSBCCCCEEEEGGGTEEEECCC---CS
T ss_pred             CCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCc-------CCCCcccceEEEcCCCCceeecCC---CC
Confidence            99999986  7776   5678887777 9999999997632110       012334689999999999999764   45


Q ss_pred             CCCCccceeEE
Q 014650          407 QPLDFGTAIMC  417 (421)
Q Consensus       407 ~~~~~~~~~~~  417 (421)
                      .+|..|+++++
T Consensus       508 ~~R~~hs~a~l  518 (656)
T 1k3i_A          508 IVRVYHSISLL  518 (656)
T ss_dssp             SCCCTTEEEEE
T ss_pred             CccccccHhhc
Confidence            67788876654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=6.2e-29  Score=255.95  Aligned_cols=278  Identities=13%  Similarity=0.093  Sum_probs=188.9

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ++..|||.+++|..++++|       +..++++++  +++||++||...+...   ........+++||+.+++|+.+++
T Consensus       167 ~~~~~dp~~~~W~~~~~~P-------~~~~~~av~~~~g~l~v~GG~~~~~~~---~~~~~~~~~~~yd~~t~~w~~~~~  236 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLP-------IVPAAAAIEPTSGRVLMWSSYRNDAFG---GSPGGITLTSSWDPSTGIVSDRTV  236 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECS-------SCCSEEEEETTTTEEEEEEECCCTTTC---SCCCSEEEEEEECTTTCCBCCCEE
T ss_pred             ccccCCCCCCeeeeeccCC-------CCceeEEEEecCCEEEEEecccccccc---cCCCCeEEEEEEeCCCCcEEeCcc
Confidence            3778999999999998887       344555555  9999999997643210   011234579999999999999999


Q ss_pred             cCCCccceE--EEE-EccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEE
Q 014650          163 MISPRGSFA--CAA-VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWV  239 (421)
Q Consensus       163 ~~~~r~~~~--~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv  239 (421)
                      |+.+|..|+  +++ .+  ++||++||...           .++++||+.+++|+.+++|+.+|..|+++++.+ ++|||
T Consensus       237 ~~~~~~~~~~~~~~~~~--g~lyv~GG~~~-----------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv  302 (656)
T 1k3i_A          237 TVTKHDMFCPGISMDGN--GQIVVTGGNDA-----------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFT  302 (656)
T ss_dssp             EECSCCCSSCEEEECTT--SCEEEECSSST-----------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEE
T ss_pred             cCCCCCCccccccCCCC--CCEEEeCCCCC-----------CceEEecCcCCceeECCCCCccccccceEEecC-CeEEE
Confidence            988876553  444 45  99999999741           269999999999999999999999887777745 89999


Q ss_pred             EeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEec-----Ccccccc---ccccCeEEEEccccCC
Q 014650          240 MGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVG-----DMWDEWE---RSRIGKIVVMEDENRG  311 (421)
Q Consensus       240 ~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~-----~~~~~~~---~~~~g~i~v~GG~~~g  311 (421)
                      +||.....         ...+++++||+.+            ++|+.++     +|+....   ....+++|++||. +|
T Consensus       303 ~GG~~~~~---------~~~~~~e~yd~~t------------~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~-~g  360 (656)
T 1k3i_A          303 IGGSWSGG---------VFEKNGEVYSPSS------------KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KG  360 (656)
T ss_dssp             ECCCCCSS---------SCCCCEEEEETTT------------TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GG
T ss_pred             EeCcccCC---------cccccceEeCCCC------------CcceeCCCccccccccccccceeecCCceEEEECC-CC
Confidence            99953221         1223344555544            5999984     3332111   1134789999987 44


Q ss_pred             CceEEEecCCceEEEeCCCCceeEecccCCC----CCCCCceEEE---EeCCeEEEEEeecCCCccccccccccccceee
Q 014650          312 RPEVFMLDKFDILRYDMGLNRWLKETTIPEI----RPCKKPLGFI---VLDGELYVMTVLKGSDLNETRRSQQHKRAGCL  384 (421)
Q Consensus       312 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      .. +..-....++.||+.+++|.........    ...+..++++   ..+++|||+||.++....       .......
T Consensus       361 ~~-~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~-------~~~~~~~  432 (656)
T 1k3i_A          361 SV-FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS-------DATTNAH  432 (656)
T ss_dssp             CE-EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS-------BCCCCEE
T ss_pred             cE-EEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC-------CcCCcce
Confidence            31 1112346899999999998864322211    0012333333   358999999997532100       0011223


Q ss_pred             EEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          385 FIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       385 ~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                      .+++||+++++|+.+. .+.++.+|.++++++.
T Consensus       433 ~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          433 IITLGEPGTSPNTVFA-SNGLYFARTFHTSVVL  464 (656)
T ss_dssp             EEECCSTTSCCEEEEC-TTCCSSCCBSCEEEEC
T ss_pred             EEEcCCCCCCCeeEEc-cCCCCCCcccCCeEEC
Confidence            7899999999999986 3455677777776654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.71  E-value=5.2e-06  Score=80.44  Aligned_cols=46  Identities=24%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             ccCccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCc
Q 014650           14 TDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRT   59 (421)
Q Consensus        14 ~~~~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~   59 (421)
                      +....-++..||+|++..||++|+..++.++..|||+|+.+..++.
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~   57 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNL   57 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchh
Confidence            3344456889999999999999999999999999999999887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.55  E-value=6.8e-06  Score=79.47  Aligned_cols=39  Identities=23%  Similarity=0.497  Sum_probs=34.7

Q ss_pred             CCCChHH----HHHHHhcCCCcchhHHHHhhhHhHHhhhcCCc
Q 014650           21 IPGLPND----VASLILAFVPYSHQSRLKQTCRSWFLFFSSRT   59 (421)
Q Consensus        21 ~~~Lp~d----l~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~   59 (421)
                      +..||+|    |+.+||++|+..++.++..|||+|+.++.++.
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~   53 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM   53 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTT
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChH
Confidence            4569999    99999999999999999999999998876543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.44  E-value=1.8e-07  Score=61.77  Aligned_cols=46  Identities=15%  Similarity=0.314  Sum_probs=38.7

Q ss_pred             ccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           17 TVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        17 ~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      +...+..||+|++.+||++++..++.++..|||+|+.+..++.+.+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            3456889999999999999999999999999999999999877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.40  E-value=9.5e-05  Score=71.73  Aligned_cols=39  Identities=15%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             ccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcC
Q 014650           19 TLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSS   57 (421)
Q Consensus        19 ~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~   57 (421)
                      -++..||+|++.+||+.|+..++.++..|||+|+.++.+
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            346679999999999999999999999999999999887

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.91  E-value=2.8e-06  Score=76.65  Aligned_cols=49  Identities=18%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             cccCCCChHHHHHHHhcCCCcchhH-HHHhhhHhHHhhhcCCcccccccc
Q 014650           18 VTLIPGLPNDVASLILAFVPYSHQS-RLKQTCRSWFLFFSSRTLVFDRHK   66 (421)
Q Consensus        18 ~~~~~~Lp~dl~~~~l~~lp~~~~~-~~~~v~k~W~~l~~~~~~~~~~~~   66 (421)
                      ...+..||+||+.+||++||..++. ++++|||+|+.|+.++.|.+.+..
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            4568899999999999999999999 999999999999999998775543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.87  E-value=0.0061  Score=56.25  Aligned_cols=227  Identities=11%  Similarity=-0.022  Sum_probs=122.6

Q ss_pred             CCccEEEeCCCCcEEECCCC---CCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCce-e
Q 014650           83 ISSPFLFDAANRACRPLPPL---PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSW-E  158 (421)
Q Consensus        83 ~~~~~~~d~~~~~W~~l~~l---~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W-~  158 (421)
                      ...+..+|+.+.++..--..   ..+   .+.....++..++++|+....              .+.+.++|+.|.+- .
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~---lg~~~~~i~~~~~~lyv~~~~--------------~~~v~viD~~t~~~~~   78 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFK---LGDVAQSMVIRDGIGWIVVNN--------------SHVIFAIDINTFKEVG   78 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSC---CBSCEEEEEEETTEEEEEEGG--------------GTEEEEEETTTCCEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcc---cCccceEEEEECCEEEEEEcC--------------CCEEEEEECcccEEEE
Confidence            45688999999887642100   111   223445677789999999763              35799999998775 3


Q ss_pred             eccccCCCccceEEEE-EccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-C--CCCCCCCCCeeEEEEccC
Q 014650          159 RIAPMISPRGSFACAA-VRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-M--DEMPRFRAGCVGFVAEES  234 (421)
Q Consensus       159 ~~~~~~~~r~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~--~~~~~~r~~~~~~~~~~~  234 (421)
                      +++....   -+.+++ -+  +++||....            ...+.++|+++.+-.. +  +..........++++.+ 
T Consensus        79 ~i~~~~~---p~~i~~~~~--g~lyv~~~~------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~-  140 (328)
T 3dsm_A           79 RITGFTS---PRYIHFLSD--EKAYVTQIW------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYG-  140 (328)
T ss_dssp             EEECCSS---EEEEEEEET--TEEEEEEBS------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEET-
T ss_pred             EcCCCCC---CcEEEEeCC--CeEEEEECC------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEEC-
Confidence            3433222   233444 45  899998743            2458899999987442 2  22110000111233344 


Q ss_pred             CeEEEEec-cCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEe---cCccccccccccCeEEEEccccC
Q 014650          235 GEFWVMGG-YGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV---GDMWDEWERSRIGKIVVMEDENR  310 (421)
Q Consensus       235 ~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~---~~~~~~~~~~~~g~i~v~GG~~~  310 (421)
                      +++|+..- .++               .+.++|+.++            +....   ...|........|++|+.... +
T Consensus       141 ~~lyv~~~~~~~---------------~v~viD~~t~------------~~~~~i~~g~~p~~i~~~~dG~l~v~~~~-~  192 (328)
T 3dsm_A          141 KYVYVNCWSYQN---------------RILKIDTETD------------KVVDELTIGIQPTSLVMDKYNKMWTITDG-G  192 (328)
T ss_dssp             TEEEEEECTTCC---------------EEEEEETTTT------------EEEEEEECSSCBCCCEECTTSEEEEEBCC-B
T ss_pred             CEEEEEcCCCCC---------------EEEEEECCCC------------eEEEEEEcCCCccceEEcCCCCEEEEECC-C
Confidence            89999852 111               1445666554            43322   111211112234777776532 1


Q ss_pred             CCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEe--CCeEEEEEeecCCCccccccccccccceeeEEEE
Q 014650          311 GRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVL--DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQI  388 (421)
Q Consensus       311 g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~  388 (421)
                      .....+.-+...|.++|+.+.+....-.++..   ....+++..  ++.||+..+                     .|++
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~~---------------------~v~~  248 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG---DWPSEVQLNGTRDTLYWINN---------------------DIWR  248 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEECCTT---CCCEEEEECTTSCEEEEESS---------------------SEEE
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEecCCC---CCceeEEEecCCCEEEEEcc---------------------EEEE
Confidence            00000000125789999998876643333321   123444444  567887643                     3678


Q ss_pred             EeCCccee
Q 014650          389 YHPRKKTW  396 (421)
Q Consensus       389 yd~~~~~W  396 (421)
                      ||+++++.
T Consensus       249 ~d~~t~~~  256 (328)
T 3dsm_A          249 MPVEADRV  256 (328)
T ss_dssp             EETTCSSC
T ss_pred             EECCCCce
Confidence            88877765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.77  E-value=0.0038  Score=57.67  Aligned_cols=241  Identities=12%  Similarity=0.056  Sum_probs=121.8

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcE-EECCCCCCCCCCCCCcceEEEE-eCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRAC-RPLPPLPCNPSTYSLCNFTSIS-LGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W-~~l~~l~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ..+.+|+....  .+.+..+|+.+.+- ..++...        ....++. .+++||+....              ...+
T Consensus        52 ~~~~lyv~~~~--~~~v~viD~~t~~~~~~i~~~~--------~p~~i~~~~~g~lyv~~~~--------------~~~v  107 (328)
T 3dsm_A           52 RDGIGWIVVNN--SHVIFAIDINTFKEVGRITGFT--------SPRYIHFLSDEKAYVTQIW--------------DYRI  107 (328)
T ss_dssp             ETTEEEEEEGG--GTEEEEEETTTCCEEEEEECCS--------SEEEEEEEETTEEEEEEBS--------------CSEE
T ss_pred             ECCEEEEEEcC--CCEEEEEECcccEEEEEcCCCC--------CCcEEEEeCCCeEEEEECC--------------CCeE
Confidence            34556665542  34588999998776 3343222        2234444 67899998742              2579


Q ss_pred             EEEeCccCceeeccccCCC----ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCCC
Q 014650          148 FRFNFLTFSWERIAPMISP----RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPRF  222 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~  222 (421)
                      .++|+.+.+-...-++...    ..-..++..+  +++||..-.           ..+.+.++|+++++... ++.-..|
T Consensus       108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~--~~lyv~~~~-----------~~~~v~viD~~t~~~~~~i~~g~~p  174 (328)
T 3dsm_A          108 FIINPKTYEITGYIECPDMDMESGSTEQMVQYG--KYVYVNCWS-----------YQNRILKIDTETDKVVDELTIGIQP  174 (328)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCBCCCEEEET--TEEEEEECT-----------TCCEEEEEETTTTEEEEEEECSSCB
T ss_pred             EEEECCCCeEEEEEEcCCccccCCCcceEEEEC--CEEEEEcCC-----------CCCEEEEEECCCCeEEEEEEcCCCc
Confidence            9999998875422111110    0223344455  899998531           13468999999987543 2221222


Q ss_pred             CCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeE
Q 014650          223 RAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKI  302 (421)
Q Consensus       223 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i  302 (421)
                      .    .+.+..++++|+..........   +  ..-...+.++|+.++            +....-.++..  .  ...-
T Consensus       175 ~----~i~~~~dG~l~v~~~~~~~~~~---~--~~~~~~v~~id~~t~------------~v~~~~~~~~g--~--~p~~  229 (328)
T 3dsm_A          175 T----SLVMDKYNKMWTITDGGYEGSP---Y--GYEAPSLYRIDAETF------------TVEKQFKFKLG--D--WPSE  229 (328)
T ss_dssp             C----CCEECTTSEEEEEBCCBCTTCS---S--CBCCCEEEEEETTTT------------EEEEEEECCTT--C--CCEE
T ss_pred             c----ceEEcCCCCEEEEECCCccCCc---c--ccCCceEEEEECCCC------------eEEEEEecCCC--C--Ccee
Confidence            2    2333333888887532211000   0  000122456666554            44322111110  0  0111


Q ss_pred             EEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEE--eCCeEEEEEeecCCCcccccccccccc
Q 014650          303 VVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIV--LDGELYVMTVLKGSDLNETRRSQQHKR  380 (421)
Q Consensus       303 ~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~  380 (421)
                      +.+...   ...+|..+. .|+++|+.+.+.......+..  .....+++.  .+++|||....+              .
T Consensus       230 la~~~d---~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~--------------y  289 (328)
T 3dsm_A          230 VQLNGT---RDTLYWINN-DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAID--------------Y  289 (328)
T ss_dssp             EEECTT---SCEEEEESS-SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTT--------------S
T ss_pred             EEEecC---CCEEEEEcc-EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccc--------------c
Confidence            222210   112555544 788999988775322222210  123445555  368999997211              0


Q ss_pred             ceeeEEEEEeCC
Q 014650          381 AGCLFIQIYHPR  392 (421)
Q Consensus       381 ~~~~~v~~yd~~  392 (421)
                      .....|.+||++
T Consensus       290 ~~~~~V~v~d~~  301 (328)
T 3dsm_A          290 QQQGIVYRYSPQ  301 (328)
T ss_dssp             SSEEEEEEECTT
T ss_pred             ccCCEEEEECCC
Confidence            011579999988

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.39  E-value=0.058  Score=50.35  Aligned_cols=118  Identities=8%  Similarity=0.052  Sum_probs=62.0

Q ss_pred             ccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeec
Q 014650           85 SPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERI  160 (421)
Q Consensus        85 ~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~  160 (421)
                      .+++||+.+.+  |+.-...+..   ..+...+.+..++.||+...               ...++.+|+.+.+  |+.-
T Consensus       154 ~l~~~d~~tG~~~W~~~~~~~~~---~~~~~~~~~~~~~~v~~g~~---------------~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          154 QLQALNEADGAVKWTVNLDMPSL---SLRGESAPTTAFGAAVVGGD---------------NGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC--------CCCCCCEEETTEEEECCT---------------TTEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCce---eecCCCCcEEECCEEEEEcC---------------CCEEEEEECCCCcEEEEEe
Confidence            47888887665  7653222210   01122334455777776321               2358899987654  7654


Q ss_pred             cccCCCc--------cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCCCCCCeeEEE
Q 014650          161 APMISPR--------GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       161 ~~~~~~r--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~  230 (421)
                      ...+...        .....++.+  +.+|+.+..             ..+..+|+++++  |+.-..      .....+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~p~~~~--~~v~~~~~~-------------g~l~~~d~~tG~~~w~~~~~------~~~~~~  274 (376)
T 3q7m_A          216 ISQATGSTEIDRLSDVDTTPVVVN--GVVFALAYN-------------GNLTALDLRSGQIMWKRELG------SVNDFI  274 (376)
T ss_dssp             CCC-----------CCCCCCEEET--TEEEEECTT-------------SCEEEEETTTCCEEEEECCC------CEEEEE
T ss_pred             cccCCCCcccccccccCCCcEEEC--CEEEEEecC-------------cEEEEEECCCCcEEeeccCC------CCCCce
Confidence            3222111        112233456  888876531             247889998875  875321      123344


Q ss_pred             EccCCeEEEEec
Q 014650          231 AEESGEFWVMGG  242 (421)
Q Consensus       231 ~~~~~~iyv~GG  242 (421)
                      ..+ +.||+...
T Consensus       275 ~~~-~~l~~~~~  285 (376)
T 3q7m_A          275 VDG-NRIYLVDQ  285 (376)
T ss_dssp             EET-TEEEEEET
T ss_pred             EEC-CEEEEEcC
Confidence            444 88888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.39  E-value=0.053  Score=47.41  Aligned_cols=100  Identities=14%  Similarity=0.026  Sum_probs=70.4

Q ss_pred             ceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          113 NFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      -++....++.||+-.|...            .+.+.++|+.|.+=.+--+++..-++.+++..+  ++||++...     
T Consensus        23 tqGL~~~~~~LyestG~~g------------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~-----   83 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETG------------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWR-----   83 (243)
T ss_dssp             EEEEEEETTEEEEEECCTT------------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESS-----
T ss_pred             cccEEEECCEEEEECCCCC------------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEee-----
Confidence            3466677899999988632            357999999999876666666666667788888  999999654     


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                             .+.+.+||+++.+-..  .++.+.. .-+++..+ ++||+.-|
T Consensus        84 -------~~~v~v~D~~tl~~~~--ti~~~~~-Gwglt~dg-~~L~vSdg  122 (243)
T 3mbr_X           84 -------NHEGFVYDLATLTPRA--RFRYPGE-GWALTSDD-SHLYMSDG  122 (243)
T ss_dssp             -------SSEEEEEETTTTEEEE--EEECSSC-CCEEEECS-SCEEEECS
T ss_pred             -------CCEEEEEECCcCcEEE--EEeCCCC-ceEEeeCC-CEEEEECC
Confidence                   3568999999876432  2222222 23555554 78999876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.36  E-value=0.054  Score=49.58  Aligned_cols=115  Identities=10%  Similarity=-0.013  Sum_probs=61.7

Q ss_pred             ccCCceEEEeCCCCC----CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE-e-CCEEEEEcccccCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQDPS----ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS-L-GPYIYLLGGSHFDARSFPLDRP  141 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~----~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~  141 (421)
                      ....+.+|+......    ...++.+|+.+.+-...-+...      . .+.++. - ++.+|+.+..            
T Consensus        49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~-~~~~~~s~dg~~l~v~~~~------------  109 (353)
T 3vgz_A           49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL------K-PFGATINNTTQTLWFGNTV------------  109 (353)
T ss_dssp             ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS------C-CCSEEEETTTTEEEEEETT------------
T ss_pred             CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC------C-cceEEECCCCCEEEEEecC------------
Confidence            345567777654321    3468899998876544322221      1 122232 2 4568887653            


Q ss_pred             CCCCeEEEEeCccCceeeccccCCCc--------cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          142 LPSDSAFRFNFLTFSWERIAPMISPR--------GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       142 ~~~~~v~~yd~~t~~W~~~~~~~~~r--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                        ...+++||+.+.+-...-+.....        .-+.++...+.+.+|+.+...           ...+.+||+.+.+-
T Consensus       110 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          110 --NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----------ESVIWVVDGGNIKL  176 (353)
T ss_dssp             --TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----------SCEEEEEETTTTEE
T ss_pred             --CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----------CceEEEEcCCCCce
Confidence              247999999887743322222111        112333332215677776321           23588999988764


Q ss_pred             E
Q 014650          214 V  214 (421)
Q Consensus       214 ~  214 (421)
                      .
T Consensus       177 ~  177 (353)
T 3vgz_A          177 K  177 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.25  E-value=0.066  Score=49.94  Aligned_cols=221  Identities=10%  Similarity=0.115  Sum_probs=112.7

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ....+|+...+   ..+++||+.+.+  |+.-  ++..      ...+.+..++.||+...               ...+
T Consensus       102 ~~~~v~v~~~~---g~l~a~d~~tG~~~W~~~--~~~~------~~~~p~~~~~~v~v~~~---------------~g~l  155 (376)
T 3q7m_A          102 SGGHVYIGSEK---AQVYALNTSDGTVAWQTK--VAGE------ALSRPVVSDGLVLIHTS---------------NGQL  155 (376)
T ss_dssp             ETTEEEEEETT---SEEEEEETTTCCEEEEEE--CSSC------CCSCCEEETTEEEEECT---------------TSEE
T ss_pred             eCCEEEEEcCC---CEEEEEECCCCCEEEEEe--CCCc------eEcCCEEECCEEEEEcC---------------CCeE
Confidence            45566665442   358999988654  6543  2211      11223455788887543               2468


Q ss_pred             EEEeCccCc--eeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCC
Q 014650          148 FRFNFLTFS--WERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPR  221 (421)
Q Consensus       148 ~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~  221 (421)
                      +.||+.+.+  |+.-...+.  .+.....++.+  +.+|+ |..            ...+..||+++++  |+.-...+.
T Consensus       156 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~v~~-g~~------------~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          156 QALNEADGAVKWTVNLDMPSLSLRGESAPTTAF--GAAVV-GGD------------NGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----CCCCCCEEET--TEEEE-CCT------------TTEEEEEETTTCCEEEEEECCC--
T ss_pred             EEEECCCCcEEEEEeCCCCceeecCCCCcEEEC--CEEEE-EcC------------CCEEEEEECCCCcEEEEEecccCC
Confidence            999987765  875432221  12223334445  77776 332            1248889998775  875433221


Q ss_pred             CC-------CCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc
Q 014650          222 FR-------AGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW  294 (421)
Q Consensus       222 ~r-------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~  294 (421)
                      ..       ......++.+ +.+|+.+. ++               .+.++|..++          .-.|+....... .
T Consensus       221 ~~~~~~~~~~~~~~p~~~~-~~v~~~~~-~g---------------~l~~~d~~tG----------~~~w~~~~~~~~-~  272 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVN-GVVFALAY-NG---------------NLTALDLRSG----------QIMWKRELGSVN-D  272 (376)
T ss_dssp             ---------CCCCCCEEET-TEEEEECT-TS---------------CEEEEETTTC----------CEEEEECCCCEE-E
T ss_pred             CCcccccccccCCCcEEEC-CEEEEEec-Cc---------------EEEEEECCCC----------cEEeeccCCCCC-C
Confidence            11       0111222333 77887642 11               1445666554          115765422111 0


Q ss_pred             cccccCeEEEEccccCCCceEEEecCCceEEEeCCCCc--eeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccc
Q 014650          295 ERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNR--WLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNET  372 (421)
Q Consensus       295 ~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  372 (421)
                      .....+.+|+...            ...+..+|+.+.+  |+.-. +..    +...+.+..++.||+... +       
T Consensus       273 ~~~~~~~l~~~~~------------~g~l~~~d~~tG~~~w~~~~-~~~----~~~~~~~~~~~~l~v~~~-~-------  327 (376)
T 3q7m_A          273 FIVDGNRIYLVDQ------------NDRVMALTIDGGVTLWTQSD-LLH----RLLTSPVLYNGNLVVGDS-E-------  327 (376)
T ss_dssp             EEEETTEEEEEET------------TCCEEEEETTTCCEEEEECT-TTT----SCCCCCEEETTEEEEECT-T-------
T ss_pred             ceEECCEEEEEcC------------CCeEEEEECCCCcEEEeecc-cCC----CcccCCEEECCEEEEEeC-C-------
Confidence            1111233333322            2468888887664  66431 111    123345567888887642 2       


Q ss_pred             ccccccccceeeEEEEEeCCcce
Q 014650          373 RRSQQHKRAGCLFIQIYHPRKKT  395 (421)
Q Consensus       373 ~~~~~~~~~~~~~v~~yd~~~~~  395 (421)
                                 ..+++||+++++
T Consensus       328 -----------g~l~~~d~~tG~  339 (376)
T 3q7m_A          328 -----------GYLHWINVEDGR  339 (376)
T ss_dssp             -----------SEEEEEETTTCC
T ss_pred             -----------CeEEEEECCCCc
Confidence                       258899988776

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.17  E-value=0.013  Score=55.75  Aligned_cols=98  Identities=9%  Similarity=0.057  Sum_probs=56.9

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .++.+|+.+.++..+..++..     ....+++.. ++.+++.++.              ...+.+||..+.+..+..+.
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~--------------~~~i~~~d~~~g~~~~~~~~  162 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-----FQPKSVRFIDNTRLAIPLLE--------------DEGMDVLDINSGQTVRLSPP  162 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-----SCBCCCEESSSSEEEEEBTT--------------SSSEEEEETTTCCEEEECCC
T ss_pred             EEEEECCCCCcceEEEEEcCC-----CCceEEEEeCCCeEEEEeCC--------------CCeEEEEECCCCeEeeecCc
Confidence            578888877766655444332     111122222 6788887763              23589999998776553322


Q ss_pred             ---CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          164 ---ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       164 ---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                         .........+.+..++.+++.++.+            ..+.+||..+.+-
T Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d------------~~v~~~d~~~~~~  203 (433)
T 3bws_A          163 EKYKKKLGFVETISIPEHNELWVSQMQA------------NAVHVFDLKTLAY  203 (433)
T ss_dssp             HHHHTTCCEEEEEEEGGGTEEEEEEGGG------------TEEEEEETTTCCE
T ss_pred             ccccccCCceeEEEEcCCCEEEEEECCC------------CEEEEEECCCceE
Confidence               1222222333442227888887753            3588999988664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.13  E-value=0.087  Score=46.53  Aligned_cols=99  Identities=8%  Similarity=-0.084  Sum_probs=66.6

Q ss_pred             eEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCcccccc
Q 014650          114 FTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLF  193 (421)
Q Consensus       114 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~  193 (421)
                      .+....++.||+..|...            .+.+.++|+.|.+=.+--+++..-+..+++..+  ++||+....      
T Consensus        46 qGL~~~~~~LyestG~~g------------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g--~~ly~ltw~------  105 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG------------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWK--DKIVGLTWK------  105 (262)
T ss_dssp             EEEEEETTEEEEEEEETT------------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESS------
T ss_pred             ceEEEECCEEEEECCCCC------------CceEEEEECCCCcEEEEEecCCccceeEEEEeC--CEEEEEEee------
Confidence            455556899999998631            357999999998865554555444556678888  999999654      


Q ss_pred             CCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          194 GAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       194 ~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                            .+.+.+||+++.+-..  .++.+-. ..+++..+ +.||+.-|
T Consensus       106 ------~~~v~v~D~~t~~~~~--ti~~~~e-G~glt~dg-~~L~~SdG  144 (262)
T 3nol_A          106 ------NGLGFVWNIRNLRQVR--SFNYDGE-GWGLTHND-QYLIMSDG  144 (262)
T ss_dssp             ------SSEEEEEETTTCCEEE--EEECSSC-CCCEEECS-SCEEECCS
T ss_pred             ------CCEEEEEECccCcEEE--EEECCCC-ceEEecCC-CEEEEECC
Confidence                  3568999999877432  2222222 23455554 78888766

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.06  E-value=0.023  Score=53.15  Aligned_cols=137  Identities=9%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCC
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      ....+.+++.+..  ...+..+|..+.+....-..+       ..-.+++..  ++.||+.+..              ..
T Consensus        40 s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~--------------~~   96 (391)
T 1l0q_A           40 SPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAG-------SSPQGVAVSPDGKQVYVTNMA--------------SS   96 (391)
T ss_dssp             CTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEETT--------------TT
T ss_pred             CCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECC-------CCccceEECCCCCEEEEEECC--------------CC
Confidence            3455666665532  235888999887765432222       111233332  4557766542              25


Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG  225 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~  225 (421)
                      .+.+||..+.+-...-..  ...-..++...+...+|+.++.+            ..+.+||..+.+....-....   .
T Consensus        97 ~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~---~  159 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVGR---S  159 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECCS---S
T ss_pred             EEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC------------CEEEEEECCCCcEEEEEecCC---C
Confidence            699999998765433222  22223333332214577777642            358899998887554322111   1


Q ss_pred             eeEEEE-ccCCeEEEEeccC
Q 014650          226 CVGFVA-EESGEFWVMGGYG  244 (421)
Q Consensus       226 ~~~~~~-~~~~~iyv~GG~~  244 (421)
                      ...+.+ .+++.||+.++.+
T Consensus       160 ~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          160 PKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEEeCCC
Confidence            123333 2324677776544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.01  E-value=0.034  Score=51.98  Aligned_cols=133  Identities=14%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             eEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           73 LLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        73 ~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      .+++.+..  ...+..+|..+++-...-....       .-.+++..  +..||+.++.              ...+.+|
T Consensus         3 ~l~vs~~~--d~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~~~~~~--------------d~~i~v~   59 (391)
T 1l0q_A            3 FAYIANSE--SDNISVIDVTSNKVTATIPVGS-------NPMGAVISPDGTKVYVANAH--------------SNDVSII   59 (391)
T ss_dssp             EEEEEETT--TTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSSEEEEEEGG--------------GTEEEEE
T ss_pred             EEEEEcCC--CCEEEEEECCCCeEEEEeecCC-------CcceEEECCCCCEEEEECCC--------------CCeEEEE
Confidence            45555542  2458899998876544322221       11233332  3467777754              2468999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      |..+.+....-....  .-..++...+...||+.+..+            ..+.+||..+++-...-...  . ...++.
T Consensus        60 d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~~~------------~~v~v~d~~~~~~~~~~~~~--~-~~~~~~  122 (391)
T 1l0q_A           60 DTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMAS------------STLSVIDTTSNTVAGTVKTG--K-SPLGLA  122 (391)
T ss_dssp             ETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECS--S-SEEEEE
T ss_pred             ECCCCeEEEEEECCC--CccceEECCCCCEEEEEECCC------------CEEEEEECCCCeEEEEEeCC--C-CcceEE
Confidence            998876544332222  222233322214577766532            35889999988754332211  1 123333


Q ss_pred             Ec-cCCeEEEEeccCC
Q 014650          231 AE-ESGEFWVMGGYGD  245 (421)
Q Consensus       231 ~~-~~~~iyv~GG~~~  245 (421)
                      +. +++.||+.++.++
T Consensus       123 ~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             ECTTSSEEEEEETTTT
T ss_pred             ECCCCCEEEEEeCCCC
Confidence            33 3245777765443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.95  E-value=0.19  Score=44.59  Aligned_cols=122  Identities=9%  Similarity=0.028  Sum_probs=63.8

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .++.||+. .+...+. ++..    ...-++++.. ++.||+....              ...+++||+ +.+.......
T Consensus        79 ~i~~~~~~-g~~~~~~-~~~~----~~~~~~i~~~~~g~l~v~~~~--------------~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYT-LPNP----DSAPYGITEGPNGDIWFTEMN--------------GNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             EEEEECTT-SCEEEEE-CSST----TCCEEEEEECTTSCEEEEETT--------------TTEEEEECT-TCCEEEEECS
T ss_pred             eEEEECCC-CcEEEEe-CCCc----CCCceeeEECCCCCEEEEecC--------------CceEEEECC-CCCEEEecCC
Confidence            47888886 4554442 2211    1223444444 5788887532              246889998 6555543211


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      .....-.+++...+ +++|+....            ...+.+||+ +++..... ++.......++++..++.||+...
T Consensus       138 ~~~~~~~~i~~~~~-g~l~v~~~~------------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          138 NKGSYPSFITLGSD-NALWFTENQ------------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             STTCCEEEEEECTT-SCEEEEETT------------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCCCceEEEcCC-CCEEEEeCC------------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEcc
Confidence            11122233343322 788887532            234788998 77665531 111112233455544478888753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.89  E-value=0.027  Score=49.24  Aligned_cols=134  Identities=13%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ..+.+|...|....+.+..+|+.+++=..--+++..     ..+.+++..+++||+....              .+.+++
T Consensus        29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-----~fgeGi~~~~~~ly~ltw~--------------~~~v~v   89 (243)
T 3mbr_X           29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-----YFGAGIVAWRDRLIQLTWR--------------NHEGFV   89 (243)
T ss_dssp             ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEESS--------------SSEEEE
T ss_pred             ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-----cceeEEEEeCCEEEEEEee--------------CCEEEE
Confidence            346788877754456789999999887665555543     3556778889999998653              467999


Q ss_pred             EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE---CCCCCCCCCCe
Q 014650          150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS---MDEMPRFRAGC  226 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~r~~~  226 (421)
                      ||+.|.+-.  ..++.+-.+.+++..+  +++|+.-|.             +.+..+|+++.+-..   +...+.+....
T Consensus        90 ~D~~tl~~~--~ti~~~~~Gwglt~dg--~~L~vSdgs-------------~~l~~iDp~t~~~~~~I~V~~~g~~~~~l  152 (243)
T 3mbr_X           90 YDLATLTPR--ARFRYPGEGWALTSDD--SHLYMSDGT-------------AVIRKLDPDTLQQVGSIKVTAGGRPLDNL  152 (243)
T ss_dssp             EETTTTEEE--EEEECSSCCCEEEECS--SCEEEECSS-------------SEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EECCcCcEE--EEEeCCCCceEEeeCC--CEEEEECCC-------------CeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence            999886533  3334444567787766  889998662             358899999976332   22223332222


Q ss_pred             eEEEEccCCeEEEE
Q 014650          227 VGFVAEESGEFWVM  240 (421)
Q Consensus       227 ~~~~~~~~~~iyv~  240 (421)
                      -...+.+ ++||+-
T Consensus       153 NeLe~~~-G~lyan  165 (243)
T 3mbr_X          153 NELEWVN-GELLAN  165 (243)
T ss_dssp             EEEEEET-TEEEEE
T ss_pred             eeeEEeC-CEEEEE
Confidence            2233334 788854

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.87  E-value=0.15  Score=45.32  Aligned_cols=100  Identities=10%  Similarity=-0.056  Sum_probs=63.6

Q ss_pred             eEEEEeC-CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          114 FTSISLG-PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       114 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      ++++..+ +.||+..|..            ..+.+.++|+.|.+=..--+++......+++..+  ++||+....     
T Consensus        24 ~Gl~~~~dg~Lyvstg~~------------~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~-----   84 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY------------GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWL-----   84 (266)
T ss_dssp             EEEEECSTTEEEEEECST------------TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETT-----
T ss_pred             ccEEEeCCCeEEEECCCC------------CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEec-----
Confidence            5666655 8999987742            2367999999998865544444333455677777  899999653     


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                             .+.+.+||+++.+=..  .++.+.....++...+ +++|+..|
T Consensus        85 -------~~~v~viD~~t~~v~~--~i~~g~~~g~glt~Dg-~~l~vs~g  124 (266)
T 2iwa_A           85 -------KNIGFIYDRRTLSNIK--NFTHQMKDGWGLATDG-KILYGSDG  124 (266)
T ss_dssp             -------CSEEEEEETTTTEEEE--EEECCSSSCCEEEECS-SSEEEECS
T ss_pred             -------CCEEEEEECCCCcEEE--EEECCCCCeEEEEECC-CEEEEECC
Confidence                   3458999999865322  2221101123455554 78998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.84  E-value=0.14  Score=45.18  Aligned_cols=95  Identities=5%  Similarity=-0.116  Sum_probs=64.4

Q ss_pred             eEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCcccccc
Q 014650          114 FTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLF  193 (421)
Q Consensus       114 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~  193 (421)
                      .+....++.||+..|..              ..+.++|+.|.+=.+-- ++..-+..+++..+  ++||++...      
T Consensus        58 qGL~~~~~~Ly~stG~~--------------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~------  114 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ--------------GTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWT------  114 (268)
T ss_dssp             EEEEEETTEEEEEETTT--------------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESS------
T ss_pred             ceEEEECCEEEEEcCCC--------------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEcc------
Confidence            45666689999999852              34899999998855433 55444456677777  999999654      


Q ss_pred             CCCCCccceEEEEECCCCceEE-CCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          194 GAAGSRISSVERYDVAKNEWVS-MDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       194 ~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                            .+.+.+||+++.+-.. ++-   +.. ..+++..+ +.||+.-|
T Consensus       115 ------~~~v~V~D~~Tl~~~~ti~~---~~e-GwGLt~Dg-~~L~vSdG  153 (268)
T 3nok_A          115 ------EGLLFTWSGMPPQRERTTRY---SGE-GWGLCYWN-GKLVRSDG  153 (268)
T ss_dssp             ------SCEEEEEETTTTEEEEEEEC---SSC-CCCEEEET-TEEEEECS
T ss_pred             ------CCEEEEEECCcCcEEEEEeC---CCc-eeEEecCC-CEEEEECC
Confidence                  3568999999876432 222   221 23455555 78999876

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.81  E-value=0.51  Score=48.94  Aligned_cols=231  Identities=10%  Similarity=0.076  Sum_probs=115.7

Q ss_pred             cEEEeCCCCcEEECCCCCCCCC--CCCCcceEEEEe-CCE-EEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           86 PFLFDAANRACRPLPPLPCNPS--TYSLCNFTSISL-GPY-IYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        86 ~~~~d~~~~~W~~l~~l~~~~~--~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      +..||+.++++......+..+.  .....-.+++.. ++. |+| |..              ...+++||+.+.+++...
T Consensus       379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~--------------~~Gl~~~d~~~~~~~~~~  443 (795)
T 4a2l_A          379 LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTH--------------AGGLSILHRNSGQVENFN  443 (795)
T ss_dssp             EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EET--------------TTEEEEEETTTCCEEEEC
T ss_pred             eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeC--------------cCceeEEeCCCCcEEEee
Confidence            7788988888877643220000  001122334333 566 775 331              135899999998887765


Q ss_pred             ccCC--C-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC----CCCCCCeeEEEEccC
Q 014650          162 PMIS--P-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM----PRFRAGCVGFVAEES  234 (421)
Q Consensus       162 ~~~~--~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~----~~~r~~~~~~~~~~~  234 (421)
                      ....  + ..-.+++... ++.|++... .             .+.+||+.+++|+.....    ..+.....++....+
T Consensus       444 ~~~~~l~~~~v~~i~~d~-~g~lwigt~-~-------------Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  508 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDG-EGNLWLGTL-S-------------ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH  508 (795)
T ss_dssp             TTTSCCSCSCEEEEEECS-SSCEEEEES-S-------------CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT
T ss_pred             cCCCCcCCCeeEEEEECC-CCCEEEEec-C-------------ceeEEeCCCCeEEEccccccccccCCceEEEEEECCC
Confidence            3111  1 1112222222 267766533 1             278899999999887533    111112234444444


Q ss_pred             CeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEccccCCCce
Q 014650          235 GEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPE  314 (421)
Q Consensus       235 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~GG~~~g~~~  314 (421)
                      +.|++... .+                +.+||+.++            ++ ........ .......+..+--  +....
T Consensus       509 g~lWigt~-~G----------------l~~~~~~~~------------~~-~~~~~~~~-~~l~~~~i~~i~~--d~~g~  555 (795)
T 4a2l_A          509 KRLWIGGE-EG----------------LSVFKQEGL------------DI-QKASILPV-SNVTKLFTNCIYE--ASNGI  555 (795)
T ss_dssp             CCEEEEES-SC----------------EEEEEEETT------------EE-EECCCSCS-CGGGGSCEEEEEE--CTTSC
T ss_pred             CCEEEEeC-Cc----------------eEEEeCCCC------------eE-EEecCCCC-CCCCCCeeEEEEE--CCCCC
Confidence            78888543 22                334555443            55 22210000 0000111211110  01111


Q ss_pred             EEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEe-CCeEEEEEeecCCCccccccccccccceeeEEEEEeCCc
Q 014650          315 VFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVL-DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK  393 (421)
Q Consensus       315 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~  393 (421)
                      ++.-....+.+||+.+++++....... +......+++.. +|.|++.+.                    ..+.+||+++
T Consensus       556 lWigT~~Gl~~~d~~~~~~~~~~~~~g-l~~~~i~~i~~d~~g~lWi~t~--------------------~Gl~~~~~~~  614 (795)
T 4a2l_A          556 IWVGTREGFYCFNEKDKQIKRYNTTNG-LPNNVVYGILEDSFGRLWLSTN--------------------RGISCFNPET  614 (795)
T ss_dssp             EEEEESSCEEEEETTTTEEEEECGGGT-CSCSCEEEEEECTTSCEEEEET--------------------TEEEEEETTT
T ss_pred             EEEEeCCCceeECCCCCcEEEeCCCCC-CchhheEEEEECCCCCEEEEcC--------------------CceEEEcCCC
Confidence            443333578999999998887643221 111122344333 477887763                    2577888888


Q ss_pred             ceeeEec
Q 014650          394 KTWRYIF  400 (421)
Q Consensus       394 ~~W~~i~  400 (421)
                      ++++...
T Consensus       615 ~~~~~~~  621 (795)
T 4a2l_A          615 EKFRNFT  621 (795)
T ss_dssp             TEEEEEC
T ss_pred             CcEEEcC
Confidence            8887664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.74  E-value=0.11  Score=47.89  Aligned_cols=145  Identities=9%  Similarity=0.142  Sum_probs=72.7

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ...+++++.+.+   ..+..||..+.++..+..+...   . ..-.+++.. ++..++.|+.+              ..+
T Consensus        18 ~~~~~l~~~~~d---~~v~i~~~~~~~~~~~~~~~~h---~-~~v~~~~~~~~~~~l~~~~~d--------------g~i   76 (372)
T 1k8k_C           18 KDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEH---N-GQVTGVDWAPDSNRIVTCGTD--------------RNA   76 (372)
T ss_dssp             TTSSEEEEECSS---SEEEEEEEETTEEEEEEEEECC---S-SCEEEEEEETTTTEEEEEETT--------------SCE
T ss_pred             CCCCEEEEEeCC---CEEEEEeCCCCcEEeeeeecCC---C-CcccEEEEeCCCCEEEEEcCC--------------CeE
Confidence            344555554443   3578899888876555444321   0 111222222 55666666642              358


Q ss_pred             EEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc-eEECCCCCCC-CCC
Q 014650          148 FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE-WVSMDEMPRF-RAG  225 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-r~~  225 (421)
                      .+||..+.++.....+........++.+..++..+++|+.+            ..+.+||..+.. |........+ ...
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~~~~~~  144 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS------------RVISICYFEQENDWWVCKHIKKPIRST  144 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT------------SSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC------------CEEEEEEecCCCcceeeeeeecccCCC
Confidence            88998888766544332222223333332226666666643            236667766654 3322222111 112


Q ss_pred             eeEEEEccCCeEEEEeccCCC
Q 014650          226 CVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       226 ~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ..++.+..++.+++.|+.++.
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~  165 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFK  165 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSC
T ss_pred             eeEEEEcCCCCEEEEEcCCCC
Confidence            334444333667777776543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.71  E-value=0.065  Score=48.67  Aligned_cols=64  Identities=16%  Similarity=0.024  Sum_probs=35.5

Q ss_pred             CceEEEeCC--CCceeEecccCCCCCCCCceEEEE-eCCe-EEEEEeecCCCccccccccccccceeeEEEEEeCCccee
Q 014650          321 FDILRYDMG--LNRWLKETTIPEIRPCKKPLGFIV-LDGE-LYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW  396 (421)
Q Consensus       321 ~~v~~yd~~--~~~W~~~~~~~~~~~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  396 (421)
                      ..|.+||..  +.+++.+..++...   ...+++. -+++ ||+.++.++                ...++.+|++++++
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~----------------~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAAGQKSH----------------HISVYEIVGEQGLL  313 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEECTTTC----------------EEEEEEEETTTTEE
T ss_pred             CEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEecCCCC----------------eEEEEEEcCCCcee
Confidence            467778776  55677776554321   1222222 2455 555443221                12455558889999


Q ss_pred             eEecccC
Q 014650          397 RYIFTKP  403 (421)
Q Consensus       397 ~~i~~~p  403 (421)
                      +.+...+
T Consensus       314 ~~~~~~~  320 (343)
T 1ri6_A          314 HEKGRYA  320 (343)
T ss_dssp             EEEEEEE
T ss_pred             eEccccc
Confidence            8887665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.18  Score=46.31  Aligned_cols=110  Identities=10%  Similarity=0.086  Sum_probs=60.3

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--C--CEEEEEcccccCCCCCCCCCCCCC
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--G--PYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      ....+++..+.+   ..+..||....++..+..+...     ......+..  +  +.+++.|+.+              
T Consensus        21 ~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~d--------------   78 (379)
T 3jrp_A           21 YYGKRLATCSSD---KTIKIFEVEGETHKLIDTLTGH-----EGPVWRVDWAHPKFGTILASCSYD--------------   78 (379)
T ss_dssp             SSSSEEEEEETT---SCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEETT--------------
T ss_pred             CCCCEEEEEECC---CcEEEEecCCCcceeeeEecCC-----CCcEEEEEeCCCCCCCEEEEeccC--------------
Confidence            344555555443   2367777766566554333321     122222332  2  5666677642              


Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      ..+.+||..+.+|..+..+........++.+..+  +.+++.|+.+            ..+.+||..+..
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~  136 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------------GKVSVVEFKENG  136 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------------SEEEEEECCTTS
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------------CcEEEEecCCCC
Confidence            3588999999888776655443333444444432  3466666643            247788887763

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.60  E-value=0.11  Score=47.15  Aligned_cols=136  Identities=10%  Similarity=0.031  Sum_probs=69.5

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ..+.+|+....  ...+..||+.+.+.......+..      . ..++..  ++.||+.+..              ...+
T Consensus         8 ~~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~------~-~~~~~s~dg~~l~~~~~~--------------~~~i   64 (331)
T 3u4y_A            8 TSNFGIVVEQH--LRRISFFSTDTLEILNQITLGYD------F-VDTAITSDCSNVVVTSDF--------------CQTL   64 (331)
T ss_dssp             CCCEEEEEEGG--GTEEEEEETTTCCEEEEEECCCC------E-EEEEECSSSCEEEEEEST--------------TCEE
T ss_pred             CCCEEEEEecC--CCeEEEEeCcccceeeeEEccCC------c-ceEEEcCCCCEEEEEeCC--------------CCeE
Confidence            34556665542  24588999999888655333321      1 133332  3458877652              3479


Q ss_pred             EEEeCccCce-e-eccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650          148 FRFNFLTFSW-E-RIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG  225 (421)
Q Consensus       148 ~~yd~~t~~W-~-~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~  225 (421)
                      ++||+.+.+. . .+..-..++  ++++...+...+| ++...         .....+.+||..+++-...-+.  .. .
T Consensus        65 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~-~~~~~---------~~~~~i~v~d~~~~~~~~~~~~--~~-~  129 (331)
T 3u4y_A           65 VQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQFAV-TVTGL---------NHPFNMQSYSFLKNKFISTIPI--PY-D  129 (331)
T ss_dssp             EEEECSSSSCEEEEEEECSSCC--CCEEECTTSSEEE-ECCCS---------SSSCEEEEEETTTTEEEEEEEC--CT-T
T ss_pred             EEEECCCCceeEEecccCCCCc--cceEECCCCCEEE-EecCC---------CCcccEEEEECCCCCeEEEEEC--CC-C
Confidence            9999988774 2 222222222  2133322214566 43321         1123689999998875443221  11 1


Q ss_pred             eeEEEE-ccCCeEEEEecc
Q 014650          226 CVGFVA-EESGEFWVMGGY  243 (421)
Q Consensus       226 ~~~~~~-~~~~~iyv~GG~  243 (421)
                      ..++.+ .+++.+|+.+..
T Consensus       130 ~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             EEEEEECTTSSCEEEEEET
T ss_pred             ccceEECCCCCEEEEEecC
Confidence            123333 332357877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.36  Score=49.98  Aligned_cols=227  Identities=11%  Similarity=0.021  Sum_probs=115.0

Q ss_pred             cEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650           86 PFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI  164 (421)
Q Consensus        86 ~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~  164 (421)
                      +..||+.++++..... +..  .....-.+++.. ++.|++ |..              ...+++||+.+.+++......
T Consensus       385 l~~~~~~~~~~~~~~~-~~~--~~~~~v~~i~~d~~g~lWi-gt~--------------~~Gl~~~~~~~~~~~~~~~~~  446 (781)
T 3v9f_A          385 INVFENGKRVAIYNKE-NRE--LLSNSVLCSLKDSEGNLWF-GTY--------------LGNISYYNTRLKKFQIIELEK  446 (781)
T ss_dssp             EEEEETTEEEEECC--------CCCSBEEEEEECTTSCEEE-EET--------------TEEEEEECSSSCEEEECCSTT
T ss_pred             EEEEECCCCeEEEccC-CCC--CCCcceEEEEECCCCCEEE-Eec--------------cCCEEEEcCCCCcEEEeccCC
Confidence            6778887776665421 110  001122333333 567776 331              135899999999988775321


Q ss_pred             CC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC---CCCCCeeEEEEccCCeEEEE
Q 014650          165 SP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP---RFRAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       165 ~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~~~iyv~  240 (421)
                      .+ ..-.+++... ++.|++...              .-+.+||+.+++|+......   .+.....++....++.|++.
T Consensus       447 ~~~~~v~~i~~d~-~g~lwigt~--------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          447 NELLDVRVFYEDK-NKKIWIGTH--------------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             TCCCCEEEEEECT-TSEEEEEET--------------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             CCCCeEEEEEECC-CCCEEEEEC--------------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence            11 1112233332 267776532              23788999998887654322   11112334445545788874


Q ss_pred             eccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEccccCCCceEEEecC
Q 014650          241 GGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDK  320 (421)
Q Consensus       241 GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~GG~~~g~~~~~~~~~  320 (421)
                      ....+                +.+||+.++            +++......    ......+..+--  +....++.-..
T Consensus       512 t~~~G----------------l~~~~~~~~------------~~~~~~~~~----~l~~~~i~~i~~--d~~g~lWi~T~  557 (781)
T 3v9f_A          512 TFGGG----------------VGIYTPDMQ------------LVRKFNQYE----GFCSNTINQIYR--SSKGQMWLATG  557 (781)
T ss_dssp             ESSSC----------------EEEECTTCC------------EEEEECTTT----TCSCSCEEEEEE--CTTSCEEEEET
T ss_pred             EcCCC----------------EEEEeCCCC------------eEEEccCCC----CCCCCeeEEEEE--CCCCCEEEEEC
Confidence            32111                334554443            676654311    001122221110  11111444333


Q ss_pred             Cce-EEEeCCCCceeEecccCCCCCCCCceEEEEe-CCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeE
Q 014650          321 FDI-LRYDMGLNRWLKETTIPEIRPCKKPLGFIVL-DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRY  398 (421)
Q Consensus       321 ~~v-~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  398 (421)
                      ..+ .+||+.+++++....... +......+++.. +|.|++.+. +                   .+.+||+++++++.
T Consensus       558 ~Glv~~~d~~~~~~~~~~~~~g-l~~~~i~~i~~d~~g~lW~~t~-~-------------------Gl~~~~~~~~~~~~  616 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQVFQRKEG-LPNTHIRAISEDKNGNIWASTN-T-------------------GISCYITSKKCFYT  616 (781)
T ss_dssp             TEEEEESCTTTCCCEEECGGGT-CSCCCCCEEEECSSSCEEEECS-S-------------------CEEEEETTTTEEEE
T ss_pred             CCceEEECCCCCcEEEccccCC-CCCceEEEEEECCCCCEEEEcC-C-------------------ceEEEECCCCceEE
Confidence            566 899999998887643211 111122344443 577887653 2                   47788888888777


Q ss_pred             ec
Q 014650          399 IF  400 (421)
Q Consensus       399 i~  400 (421)
                      ..
T Consensus       617 ~~  618 (781)
T 3v9f_A          617 YD  618 (781)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.46  E-value=0.095  Score=48.25  Aligned_cols=101  Identities=8%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.++++|+.              ...+.+||..+.+++.+..+.........+.+..++.+++.|+.+           
T Consensus        19 ~~~~l~~~~~--------------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----------   73 (372)
T 1k8k_C           19 DRTQIAICPN--------------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----------   73 (372)
T ss_dssp             TSSEEEEECS--------------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----------
T ss_pred             CCCEEEEEeC--------------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----------
Confidence            5566667763              246899999998776666554333333333332226666777653           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                       ..+.+||..+.++.....+........++.+..++++++.|+.++.
T Consensus        74 -g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  119 (372)
T 1k8k_C           74 -RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV  119 (372)
T ss_dssp             -SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSS
T ss_pred             -CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCE
Confidence             2488899988887654332222222334444333667777775543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.45  E-value=0.5  Score=42.88  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+........        .....++++|+.+.+-...-+...  .-+.++...+++.+|+.++.+           
T Consensus        52 g~~l~~~~~~~~~~--------~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~-----------  110 (353)
T 3vgz_A           52 ENALWLATSQSRKL--------DKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVN-----------  110 (353)
T ss_dssp             TTEEEEEECCCTTT--------EESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTT-----------
T ss_pred             CCEEEEEcCCCcCC--------CCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCC-----------
Confidence            45788776421100        013579999998876443322221  122333333214588876642           


Q ss_pred             cceEEEEECCCCce
Q 014650          200 ISSVERYDVAKNEW  213 (421)
Q Consensus       200 ~~~~~~yd~~t~~W  213 (421)
                       ..+.+||+++.+-
T Consensus       111 -~~v~~~d~~~~~~  123 (353)
T 3vgz_A          111 -SAVTAIDAKTGEV  123 (353)
T ss_dssp             -TEEEEEETTTCCE
T ss_pred             -CEEEEEeCCCCee
Confidence             3688999998774

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.44  E-value=0.47  Score=42.48  Aligned_cols=137  Identities=11%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ..++++..+.+   ..+..||..+.+....-.-.       ......+..  ++.+++.|+.              -..+
T Consensus        34 ~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--------------d~~i   89 (312)
T 4ery_A           34 NGEWLASSSAD---KLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSNLLVSASD--------------DKTL   89 (312)
T ss_dssp             TSSEEEEEETT---SCEEEEETTTCCEEEEECCC-------SSCEEEEEECTTSSEEEEEET--------------TSEE
T ss_pred             CCCEEEEeeCC---CeEEEEeCCCcccchhhccC-------CCceEEEEEcCCCCEEEEECC--------------CCEE
Confidence            34445444443   23678888777665431111       111222222  4566677764              2468


Q ss_pred             EEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCee
Q 014650          148 FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCV  227 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~  227 (421)
                      .+||..+.+-..  .+......-.++.+..++.+++.|+.+            ..+.+||..+.+-...  ++.......
T Consensus        90 ~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~--~~~~~~~v~  153 (312)
T 4ery_A           90 KIWDVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFD------------ESVRIWDVKTGKCLKT--LPAHSDPVS  153 (312)
T ss_dssp             EEEETTTCCEEE--EEECCSSCEEEEEECSSSSEEEEEETT------------SCEEEEETTTCCEEEE--ECCCSSCEE
T ss_pred             EEEECCCCcEEE--EEcCCCCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCEEEEE--ecCCCCcEE
Confidence            889987765322  111111122233333225667777754            2378899887763321  111111223


Q ss_pred             EEEEccCCeEEEEeccCCC
Q 014650          228 GFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       228 ~~~~~~~~~iyv~GG~~~~  246 (421)
                      ++.+..++.+++.|+.++.
T Consensus       154 ~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A          154 AVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             EEEECTTSSEEEEEETTSC
T ss_pred             EEEEcCCCCEEEEEeCCCc
Confidence            3444333677777776553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.30  E-value=0.73  Score=43.11  Aligned_cols=57  Identities=9%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCccee
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW  396 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  396 (421)
                      ..|.+||..+.+...+..+.... .+.......-+++.++.||.++                  .|.+||..+++-
T Consensus       327 g~i~v~~~~~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~s~~~dg------------------~i~iw~~~~~~~  383 (401)
T 4aez_A          327 NNLSIWSYSSSGLTKQVDIPAHD-TRVLYSALSPDGRILSTAASDE------------------NLKFWRVYDGDH  383 (401)
T ss_dssp             CEEEEEEEETTEEEEEEEEECCS-SCCCEEEECTTSSEEEEECTTS------------------EEEEEECCC---
T ss_pred             CcEEEEecCCccceeEEEecCCC-CCEEEEEECCCCCEEEEEeCCC------------------cEEEEECCCCcc
Confidence            46778888877776664443211 1122222333677778887653                  578888776653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.06  E-value=1.1  Score=46.33  Aligned_cols=124  Identities=8%  Similarity=-0.006  Sum_probs=67.2

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      -++.||+.+++++.......+    ...-.+++.. ++.|++...                ..+++||+.+.+|+.....
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g~lwigt~----------------~Gl~~~~~~~~~~~~~~~~  487 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNE----LLDVRVFYEDKNKKIWIGTH----------------AGVFVIDLASKKVIHHYDT  487 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTC----CCCEEEEEECTTSEEEEEET----------------TEEEEEESSSSSCCEEECT
T ss_pred             CEEEEcCCCCcEEEeccCCCC----CCeEEEEEECCCCCEEEEEC----------------CceEEEeCCCCeEEecccC
Confidence            377889988888887532111    1122333333 567776432                3589999999998776533


Q ss_pred             CC---CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC-CCCCCeeEEEEccCCeEEE
Q 014650          164 IS---PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP-RFRAGCVGFVAEESGEFWV  239 (421)
Q Consensus       164 ~~---~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~~~iyv  239 (421)
                      ..   ..........+.++.|++....             .-+.+||+.+++++...... .+.....++....++.|++
T Consensus       488 ~~~~~~~~~i~~i~~d~~g~lWigt~~-------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          488 SNSQLLENFVRSIAQDSEGRFWIGTFG-------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             TTSSCSCSCEEEEEECTTCCEEEEESS-------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred             cccccccceeEEEEEcCCCCEEEEEcC-------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE
Confidence            21   1111122222222677765321             12778999999888764311 1111233444444477887


Q ss_pred             Ee
Q 014650          240 MG  241 (421)
Q Consensus       240 ~G  241 (421)
                      ..
T Consensus       555 ~T  556 (781)
T 3v9f_A          555 AT  556 (781)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.01  E-value=0.92  Score=44.76  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      ...+|+.+..  ...+..+|..+.+-...  ++..     ..-|.++..  +.+||+.+..               ..+.
T Consensus       148 ~~~~~vs~~~--d~~V~v~D~~t~~~~~~--i~~g-----~~~~~v~~spdg~~l~v~~~d---------------~~V~  203 (543)
T 1nir_A          148 PNLFSVTLRD--AGQIALVDGDSKKIVKV--IDTG-----YAVHISRMSASGRYLLVIGRD---------------ARID  203 (543)
T ss_dssp             GGEEEEEEGG--GTEEEEEETTTCCEEEE--EECS-----TTEEEEEECTTSCEEEEEETT---------------SEEE
T ss_pred             CCEEEEEEcC--CCeEEEEECCCceEEEE--EecC-----cccceEEECCCCCEEEEECCC---------------CeEE
Confidence            3456665542  24577899988765432  2211     123444433  4567766531               5699


Q ss_pred             EEeC--ccCceeeccccCCCccceEEEEEc----cCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          149 RFNF--LTFSWERIAPMISPRGSFACAAVR----SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       149 ~yd~--~t~~W~~~~~~~~~r~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                      +||.  .+.+  .+..++....-..++.-.    ++..+|+....            ...+.++|..+.+-
T Consensus       204 v~D~~~~t~~--~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------------~~~v~v~D~~t~~~  260 (543)
T 1nir_A          204 MIDLWAKEPT--KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------------PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEETTSSSCE--EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------------SSEEEEEETTTCCE
T ss_pred             EEECcCCCCc--EEEEEecCCCcceEEeCCCcCCCCCEEEEEEcc------------CCeEEEEecccccc
Confidence            9999  5543  333344333223333321    21456655422            23477888887653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=95.98  E-value=0.48  Score=42.87  Aligned_cols=67  Identities=12%  Similarity=0.056  Sum_probs=37.4

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-C-CEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-G-PYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      +.+|+.+..  ...++.+|+.+.+....-+++..     ...+.++.. + +.+|+.+..              ...+++
T Consensus        11 ~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~~~v~~~~--------------~~~i~~   69 (349)
T 1jmx_B           11 HEYMIVTNY--PNNLHVVDVASDTVYKSCVMPDK-----FGPGTAMMAPDNRTAYVLNNH--------------YGDIYG   69 (349)
T ss_dssp             CEEEEEEET--TTEEEEEETTTTEEEEEEECSSC-----CSSCEEEECTTSSEEEEEETT--------------TTEEEE
T ss_pred             CEEEEEeCC--CCeEEEEECCCCcEEEEEecCCC-----CCCceeEECCCCCEEEEEeCC--------------CCcEEE
Confidence            444554432  34688999988876543233320     011233333 3 467877642              356999


Q ss_pred             EeCccCceee
Q 014650          150 FNFLTFSWER  159 (421)
Q Consensus       150 yd~~t~~W~~  159 (421)
                      ||+.+.+-..
T Consensus        70 ~d~~t~~~~~   79 (349)
T 1jmx_B           70 IDLDTCKNTF   79 (349)
T ss_dssp             EETTTTEEEE
T ss_pred             EeCCCCcEEE
Confidence            9998876543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.97  E-value=0.0024  Score=57.03  Aligned_cols=42  Identities=26%  Similarity=0.300  Sum_probs=38.7

Q ss_pred             CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      +..||+|++..||++|+..++.++..|||+|+.+..++.+.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr   46 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR   46 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence            557999999999999999999999999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=95.94  E-value=0.0036  Score=57.80  Aligned_cols=44  Identities=16%  Similarity=0.367  Sum_probs=38.4

Q ss_pred             ccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcc
Q 014650           17 TVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTL   60 (421)
Q Consensus        17 ~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~   60 (421)
                      +...|..||+|++.+||.+++..++.++..|||+|+.+..++.+
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            45668999999999999999999999999999999999876653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.91  E-value=0.77  Score=39.94  Aligned_cols=123  Identities=10%  Similarity=-0.030  Sum_probs=60.8

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ..+..||+.+...........      ..-.+++.. ++.||+...               ...+++||+.+.....+..
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g~l~v~~~---------------~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNGL------YQPQGLAVDGAGTVYVTDF---------------NNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEECC-----EECCCCSC------CSCCCEEECTTCCEEEEET---------------TTEEEEECTTCSCCEECCC
T ss_pred             CcEEEecCCCcccceEeeCCc------CCcceeEECCCCCEEEEcC---------------CCEEEEEeCCCceEeeeec
Confidence            457888887766555432111      112334443 567888754               1358999988876544432


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      . ....-.++++..+ +++|+....            ...+.+|+..+............  ...++++..+++||+...
T Consensus       105 ~-~~~~p~~i~~~~~-g~l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          105 D-GLNYPEGLAVDTQ-GAVYVADRG------------NNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             C-SCSSEEEEEECTT-CCEEEEEGG------------GTEEEEECTTCCSCEECCCCSCC--SCCCEEECTTCCEEEEEG
T ss_pred             C-CcCCCcceEECCC-CCEEEEECC------------CCEEEEEECCCceeEeeccccCC--CceeEEEeCCCCEEEEEC
Confidence            1 1111233333322 789987543            23477787776654433221111  122344443478998764


Q ss_pred             c
Q 014650          243 Y  243 (421)
Q Consensus       243 ~  243 (421)
                      .
T Consensus       169 ~  169 (270)
T 1rwi_B          169 D  169 (270)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.89  E-value=0.23  Score=45.35  Aligned_cols=28  Identities=7%  Similarity=0.082  Sum_probs=16.7

Q ss_pred             EEEeCCCCCCCccEEEeCCCCcEEECCC
Q 014650           74 LCIFPQDPSISSPFLFDAANRACRPLPP  101 (421)
Q Consensus        74 ~~~~g~~~~~~~~~~~d~~~~~W~~l~~  101 (421)
                      +|+.........++.||..+.+++.+..
T Consensus        53 l~~~~~~~~~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A           53 LYSVDKEDDEGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEecCCcEEEeee
Confidence            5655432123457888887777766543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.86  E-value=0.57  Score=42.01  Aligned_cols=87  Identities=10%  Similarity=0.088  Sum_probs=44.7

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+......+...........+..++..++.|+.+            ..+.+||..+.+....-...  ..
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------g~v~~~d~~~~~~~~~~~~~--~~  184 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------------GNIAVWDLHNQTLVRQFQGH--TD  184 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------------SCEEEEETTTTEEEEEECCC--SS
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------------CcEEEEeCCCCceeeeeecc--cC
Confidence            46899999888755444443332223333332226666676653            24888999887643321111  11


Q ss_pred             CeeEEEEccCCeEEEEeccCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ...++.+..++..++.|+.++
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEECCCCCEEEEEecCC
Confidence            223344433366666776544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.83  E-value=1  Score=40.84  Aligned_cols=130  Identities=8%  Similarity=-0.023  Sum_probs=66.9

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeecc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIA  161 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~  161 (421)
                      .+..+|+.+.+......-..    + ..-+.++.. ++.||+....              ...|.+||+..+.  -..+.
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~----~-~~p~gia~d~~g~l~v~d~~--------------~~~v~~~~~~g~~~~~~~~~  130 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNL----F-YLPHGLSIDTDGNYWVTDVA--------------LHQVFKLDPHSKEGPLLILG  130 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTT----C-SSEEEEEECTTSCEEEEETT--------------TTEEEEECTTCSSCCSEEES
T ss_pred             cEEEEECCCCeEEeccCCCc----c-CCceEEEECCCCCEEEEECC--------------CCEEEEEeCCCCeEEEEEec
Confidence            58899998777643211110    1 122344443 6779987652              3579999986652  22222


Q ss_pred             cc------CCCccceEEEEEcc-CCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC-------CCCCCCee
Q 014650          162 PM------ISPRGSFACAAVRS-LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-------PRFRAGCV  227 (421)
Q Consensus       162 ~~------~~~r~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~r~~~~  227 (421)
                      ..      .........+++.. ++.|||..+..           ...+.+||+....-..+...       +.......
T Consensus       131 ~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~  199 (329)
T 3fvz_A          131 RSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPH  199 (329)
T ss_dssp             BTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEE
T ss_pred             ccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCc
Confidence            11      11111233444432 38999998631           23578888554433333211       11111234


Q ss_pred             EEEEccC-CeEEEEeccC
Q 014650          228 GFVAEES-GEFWVMGGYG  244 (421)
Q Consensus       228 ~~~~~~~-~~iyv~GG~~  244 (421)
                      ++++..+ +.|||....+
T Consensus       200 gia~d~~~g~l~v~d~~~  217 (329)
T 3fvz_A          200 SLALVPHLDQLCVADREN  217 (329)
T ss_dssp             EEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEECCC
Confidence            5555433 7999987543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.78  E-value=0.93  Score=39.92  Aligned_cols=133  Identities=7%  Similarity=0.023  Sum_probs=68.6

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      ..+++...  ....+..||+. .+...+. ++..   . ..-++++.. ++.||+....              ...+.+|
T Consensus        31 g~l~v~~~--~~~~v~~~~~~-~~~~~~~-~~~~---~-~~~~~i~~~~~g~l~v~~~~--------------~~~v~~~   88 (300)
T 2qc5_A           31 GKVWFTQH--KANKISSLDQS-GRIKEFE-VPTP---D-AKVMCLIVSSLGDIWFTENG--------------ANKIGKL   88 (300)
T ss_dssp             SCEEEEET--TTTEEEEECTT-SCEEEEE-CSST---T-CCEEEEEECTTSCEEEEETT--------------TTEEEEE
T ss_pred             CCEEEEcC--CCCeEEEECCC-CceEEEE-CCCC---C-CcceeEEECCCCCEEEEecC--------------CCeEEEE
Confidence            44555432  12457889988 6766532 2211   0 122344443 5778886531              3468999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      |+. .++...........-+.+++..+ +.+|+....            ...+.+||+. ++..... ++.......+++
T Consensus        89 d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~------------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~  152 (300)
T 2qc5_A           89 SKK-GGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN------------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFIT  152 (300)
T ss_dssp             CTT-SCEEEEECSSTTCCEEEEEECST-TCEEEEETT------------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEE
T ss_pred             CCC-CCeEEecCCCCCCCCccceECCC-CCEEEEccC------------CCeEEEECCC-CCEEEcc-CCCCCCCceeEE
Confidence            988 66654432111222233343322 789887542            1247788887 5554332 121112233455


Q ss_pred             EccCCeEEEEec
Q 014650          231 AEESGEFWVMGG  242 (421)
Q Consensus       231 ~~~~~~iyv~GG  242 (421)
                      +..+++||+...
T Consensus       153 ~d~~g~l~v~~~  164 (300)
T 2qc5_A          153 LGSDNALWFTEN  164 (300)
T ss_dssp             ECTTSSEEEEET
T ss_pred             ECCCCCEEEEec
Confidence            544477888653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.76  E-value=1.4  Score=41.67  Aligned_cols=187  Identities=9%  Similarity=0.006  Sum_probs=94.1

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCE-EEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQ-IIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ..++++|..+.+...+...+.   ......+..+++ |++.+..+          ....++++|..+++...+.....  
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~---~~~~~~~spdg~~la~~~~~~----------g~~~i~~~d~~~~~~~~l~~~~~--  267 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSKLAFALSKT----------GSLNLYVMDLASGQIRQVTDGRS--  267 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS---CEEEEEECTTSSEEEEEECTT----------SSCEEEEEETTTCCEEECCCCSS--
T ss_pred             cEEEEEECCCCcEEEeecCCC---cccCEEEcCCCCEEEEEEecC----------CCceEEEEECCCCCEEeCcCCCC--
Confidence            579999999988776654332   222333332244 55455432          13468999999988776654321  


Q ss_pred             CCeeEEEEccCCe-EEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccc---cccccc
Q 014650          224 AGCVGFVAEESGE-FWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE---WERSRI  299 (421)
Q Consensus       224 ~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~---~~~~~~  299 (421)
                       ......+.-+++ |++.+..++..             .++.+|..++            +-..+......   ..-...
T Consensus       268 -~~~~~~~spdg~~l~~~s~~~g~~-------------~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spd  321 (415)
T 2hqs_A          268 -NNTEPTWFPDSQNLAFTSDQAGRP-------------QVYKVNINGG------------APQRITWEGSQNQDADVSSD  321 (415)
T ss_dssp             -CEEEEEECTTSSEEEEEECTTSSC-------------EEEEEETTSS------------CCEECCCSSSEEEEEEECTT
T ss_pred             -cccceEECCCCCEEEEEECCCCCc-------------EEEEEECCCC------------CEEEEecCCCcccCeEECCC
Confidence             122333322254 44443222211             1445555544            32222111000   011122


Q ss_pred             CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccc
Q 014650          300 GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHK  379 (421)
Q Consensus       300 g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~  379 (421)
                      |+.+++++.-++        ...|+++|..+.+...+..-.     ........-+++.+++++.++..           
T Consensus       322 G~~l~~~~~~~g--------~~~i~~~d~~~~~~~~l~~~~-----~~~~~~~spdg~~l~~~s~~~~~-----------  377 (415)
T 2hqs_A          322 GKFMVMVSSNGG--------QQHIAKQDLATGGVQVLSSTF-----LDETPSLAPNGTMVIYSSSQGMG-----------  377 (415)
T ss_dssp             SSEEEEEEECSS--------CEEEEEEETTTCCEEECCCSS-----SCEEEEECTTSSEEEEEEEETTE-----------
T ss_pred             CCEEEEEECcCC--------ceEEEEEECCCCCEEEecCCC-----CcCCeEEcCCCCEEEEEEcCCCc-----------
Confidence            444444432011        146889999988876653221     11122233467777777654321           


Q ss_pred             cceeeEEEEEeCCcceeeEec
Q 014650          380 RAGCLFIQIYHPRKKTWRYIF  400 (421)
Q Consensus       380 ~~~~~~v~~yd~~~~~W~~i~  400 (421)
                          ..++.+|...+..+.+.
T Consensus       378 ----~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          378 ----SVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             ----EEEEEEETTSCCEEECC
T ss_pred             ----cEEEEEECCCCcEEEee
Confidence                47899998877766654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.75  E-value=0.55  Score=44.20  Aligned_cols=88  Identities=8%  Similarity=0.052  Sum_probs=51.1

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC---C
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP---R  221 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~---~  221 (421)
                      ..++.+|+.+.+++.+..++.+..-.+++... ++.+++.++.+            ..+.+||..+++.....+..   .
T Consensus       101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~------------~~i~~~d~~~g~~~~~~~~~~~~~  167 (433)
T 3bws_A          101 EKLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAIPLLED------------EGMDVLDINSGQTVRLSPPEKYKK  167 (433)
T ss_dssp             TCEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEEEBTTS------------SSEEEEETTTCCEEEECCCHHHHT
T ss_pred             eEEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEEEeCCC------------CeEEEEECCCCeEeeecCcccccc
Confidence            36899999877776665554443222333322 17888887743            24889999988766543321   1


Q ss_pred             CCCCeeEEEEccCCeEEEEeccCC
Q 014650          222 FRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       222 ~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ......++.+..++.+++.++.++
T Consensus       168 ~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          168 KLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             TCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             cCCceeEEEEcCCCEEEEEECCCC
Confidence            111222344433378888887544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.72  E-value=0.13  Score=45.51  Aligned_cols=107  Identities=10%  Similarity=-0.070  Sum_probs=73.4

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      .+.+|...|....+.+..+|+.+.+=..--+++..     ..+.+++..+++||+....              .+.+++|
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~FgeGit~~g~~ly~ltw~--------------~~~v~v~  112 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YFGEGISDWKDKIVGLTWK--------------NGLGFVW  112 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEESS--------------SSEEEEE
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----cceeEEEEeCCEEEEEEee--------------CCEEEEE
Confidence            46777776643345688999999886554445432     3455678889999999653              4679999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                      |+.|.+-.  ..++.+-.+.+++.-+  +.+|+.-|             .+.+..+|+++.+-
T Consensus       113 D~~t~~~~--~ti~~~~eG~glt~dg--~~L~~SdG-------------s~~i~~iDp~T~~v  158 (262)
T 3nol_A          113 NIRNLRQV--RSFNYDGEGWGLTHND--QYLIMSDG-------------TPVLRFLDPESLTP  158 (262)
T ss_dssp             ETTTCCEE--EEEECSSCCCCEEECS--SCEEECCS-------------SSEEEEECTTTCSE
T ss_pred             ECccCcEE--EEEECCCCceEEecCC--CEEEEECC-------------CCeEEEEcCCCCeE
Confidence            99886643  3333333556777666  78888765             24588999998763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.72  E-value=0.94  Score=39.49  Aligned_cols=107  Identities=12%  Similarity=-0.027  Sum_probs=56.8

Q ss_pred             CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE-eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc-Ccee
Q 014650           81 PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS-LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT-FSWE  158 (421)
Q Consensus        81 ~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t-~~W~  158 (421)
                      .....++.+|..+++...+.....       .-.+++. -++..+++++.               ..+++||..+ .+..
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~---------------~~i~~~d~~~~~~~~   76 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPE-------LFEAPNWSPDGKYLLLNSE---------------GLLYRLSLAGDPSPE   76 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESS-------CCEEEEECTTSSEEEEEET---------------TEEEEEESSSCCSCE
T ss_pred             CcceeEEEEeCCCCceeeeccCCc-------ceEeeEECCCCCEEEEEcC---------------CeEEEEeCCCCCCce
Confidence            344568899998888765533221       1122222 25555555541               3699999988 7766


Q ss_pred             eccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          159 RIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       159 ~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      .+........-..++...+ ++.+++++..        ......++.++..+..-..+..
T Consensus        77 ~~~~~~~~~~~~~~~~spd-g~~l~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~  127 (297)
T 2ojh_A           77 KVDTGFATICNNDHGISPD-GALYAISDKV--------EFGKSAIYLLPSTGGTPRLMTK  127 (297)
T ss_dssp             ECCCTTCCCBCSCCEECTT-SSEEEEEECT--------TTSSCEEEEEETTCCCCEECCS
T ss_pred             EeccccccccccceEECCC-CCEEEEEEeC--------CCCcceEEEEECCCCceEEeec
Confidence            6543322111112222222 5544454422        1124568888888777655543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=95.72  E-value=0.33  Score=43.08  Aligned_cols=133  Identities=13%  Similarity=0.006  Sum_probs=81.0

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEe
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFN  151 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd  151 (421)
                      ..+|+..+....+.+..+|+.+++=..--+++..     ....+++..+++||+....              .+.+++||
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-----~fgeGi~~~g~~lyv~t~~--------------~~~v~viD   92 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-----YFGEGLTLLNEKLYQVVWL--------------KNIGFIYD   92 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETTEEEEEETT--------------CSEEEEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----cceEEEEEeCCEEEEEEec--------------CCEEEEEE
Confidence            5788876543456799999999886554334321     2445677779999998652              46799999


Q ss_pred             CccCceeeccccCCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-C--CCCCCCCCCee
Q 014650          152 FLTFSWERIAPMISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-M--DEMPRFRAGCV  227 (421)
Q Consensus       152 ~~t~~W~~~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~--~~~~~~r~~~~  227 (421)
                      +.|.+=  +..++.+ -.+.+++.-+  +++|+.-|             .+.+.++|+++.+=.. +  ...+.+....-
T Consensus        93 ~~t~~v--~~~i~~g~~~g~glt~Dg--~~l~vs~g-------------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           93 RRTLSN--IKNFTHQMKDGWGLATDG--KILYGSDG-------------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             TTTTEE--EEEEECCSSSCCEEEECS--SSEEEECS-------------SSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CCCCcE--EEEEECCCCCeEEEEECC--CEEEEECC-------------CCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            987653  2233333 3345566555  78998754             3468999999876322 2  22222222222


Q ss_pred             EEEEccCCeEEEEe
Q 014650          228 GFVAEESGEFWVMG  241 (421)
Q Consensus       228 ~~~~~~~~~iyv~G  241 (421)
                      .+.+.+ +++|+--
T Consensus       156 ele~~d-g~lyvn~  168 (266)
T 2iwa_A          156 ELEYIN-GEVWANI  168 (266)
T ss_dssp             EEEEET-TEEEEEE
T ss_pred             eEEEEC-CEEEEec
Confidence            333334 7888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.21  Score=51.52  Aligned_cols=108  Identities=10%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--C--CEEEEEcccccCCCCCCCCCCCCCC
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--G--PYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      ..++++..+.+   ..+..||....++..+..+...     ......+..  +  +..++.|+.+              .
T Consensus        20 dg~~latg~~d---g~I~vwd~~~~~~~~~~~l~~h-----~~~V~~l~~s~~~~~~~l~s~s~D--------------g   77 (753)
T 3jro_A           20 YGKRLATCSSD---KTIKIFEVEGETHKLIDTLTGH-----EGPVWRVDWAHPKFGTILASCSYD--------------G   77 (753)
T ss_dssp             SSCCEEEEETT---TEEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCTTSCSEEEEEETT--------------S
T ss_pred             CCCeEEEEECC---CcEEEEecCCCCCccceeccCC-----cCceEEEEecCCCCCCEEEEEeCC--------------C
Confidence            44555555443   3477788776666665444421     122222332  2  5667777642              4


Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      .+.+||..+.+|..+..+........++.+..+  +.+++.|+.+            ..+.+||..+.
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------------g~I~vwdl~~~  133 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------------GKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------------SEEEEEECCSS
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------------CcEEEEEeecC
Confidence            588999999888776655444334444444432  4566666653            24778887765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.62  E-value=1.6  Score=41.38  Aligned_cols=57  Identities=7%  Similarity=0.209  Sum_probs=32.5

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceee
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWR  397 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  397 (421)
                      ..|.+||..+.+-..  .+............+..++.+++.|+.++                  .|.+||..+++..
T Consensus       339 g~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg------------------~v~iwd~~~~~~~  395 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQ--TLQGPNKHQSAVTCLQFNKNFVITSSDDG------------------TVKLWDLKTGEFI  395 (445)
T ss_dssp             SCEEEEETTTCCEEE--EECSTTSCSSCEEEEEECSSEEEEEETTS------------------EEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEEE--EEccCCCCCCCEEEEEECCCEEEEEeCCC------------------eEEEEECCCCcee
Confidence            457788877654322  22211001123344556788888887663                  6788888777653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.57  E-value=1.1  Score=39.37  Aligned_cols=99  Identities=13%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             eEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          114 FTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       114 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      ++++.. ++.||+....              ...+.+||+. .+..... ++..........++.++.+|+....     
T Consensus        23 ~~i~~d~~g~l~v~~~~--------------~~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----   81 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHK--------------ANKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENG-----   81 (300)
T ss_dssp             EEEEECTTSCEEEEETT--------------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT-----
T ss_pred             ceeeECCCCCEEEEcCC--------------CCeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecC-----
Confidence            344433 5788886532              3468999988 6666543 2222122223333322788887542     


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                             ...+.+||+. +++..... +.......++++..++.+|+...
T Consensus        82 -------~~~v~~~d~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~  122 (300)
T 2qc5_A           82 -------ANKIGKLSKK-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQL  122 (300)
T ss_dssp             -------TTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEET
T ss_pred             -------CCeEEEECCC-CCeEEecC-CCCCCCCccceECCCCCEEEEcc
Confidence                   2347889988 66654321 11112234555554488988754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.41  E-value=1.2  Score=40.99  Aligned_cols=132  Identities=8%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc-eeec
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS-WERI  160 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~  160 (421)
                      ..+..||..++.|..+..+...     ......+..  ++..++.|+.+              ..+.+||..+.+ |...
T Consensus        33 ~~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~d--------------~~v~vwd~~~~~~~~~~   93 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTFSDH-----DKIVTCVDWAPKSNRIVTCSQD--------------RNAYVYEKRPDGTWKQT   93 (377)
T ss_dssp             SCBCEEEEETTEEEECCCBCCC-----SSCEEEEEECTTTCCEEEEETT--------------SSEEEC------CCCCE
T ss_pred             CEEEEEEccCCceEEEEEEecC-----CceEEEEEEeCCCCEEEEEeCC--------------CeEEEEEcCCCCceeee
Confidence            3477888888888877666532     122222222  45666666642              358889988877 6554


Q ss_pred             cccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc-eEECCCCCC-CCCCeeEEEEccCCeEE
Q 014650          161 APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE-WVSMDEMPR-FRAGCVGFVAEESGEFW  238 (421)
Q Consensus       161 ~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~r~~~~~~~~~~~~~iy  238 (421)
                      ..+........++.+..+++.++.|+.+            ..+.+||..+.+ |..+..+.. ......++.+..++++.
T Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSPNEDKFAVGSGA------------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             EECCCCSSCEEEEECCTTSSCCEEEESS------------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             eEecccCCceEEEEECCCCCEEEEEecC------------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            4333222223333332225666666653            237778877764 433322222 12223344444336777


Q ss_pred             EEeccCCC
Q 014650          239 VMGGYGDS  246 (421)
Q Consensus       239 v~GG~~~~  246 (421)
                      +.|+.++.
T Consensus       162 ~~~~~d~~  169 (377)
T 3dwl_C          162 AAGCADRK  169 (377)
T ss_dssp             EEEESSSC
T ss_pred             EEEeCCCE
Confidence            77776543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.39  E-value=1.3  Score=38.94  Aligned_cols=121  Identities=6%  Similarity=-0.014  Sum_probs=63.5

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ..+..||+. .++..... +..    ...-++++.. ++.||+....              ...+++||+. .+.+.+. 
T Consensus        36 ~~v~~~d~~-~~~~~~~~-~~~----~~~~~~i~~~~~g~l~v~~~~--------------~~~i~~~~~~-g~~~~~~-   93 (299)
T 2z2n_A           36 NMISCINLD-GKITEYPL-PTP----DAKVMCLTISSDGEVWFTENA--------------ANKIGRITKK-GIIKEYT-   93 (299)
T ss_dssp             TEEEEECTT-CCEEEEEC-SST----TCCEEEEEECTTSCEEEEETT--------------TTEEEEECTT-SCEEEEE-
T ss_pred             CcEEEEcCC-CCeEEecC-Ccc----cCceeeEEECCCCCEEEeCCC--------------CCeEEEECCC-CcEEEEe-
Confidence            358899988 77765432 111    0122344443 6788887542              2458899986 4454443 


Q ss_pred             cCC-CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEe
Q 014650          163 MIS-PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG  241 (421)
Q Consensus       163 ~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~G  241 (421)
                      ++. ...-++++...+ +.+|+....            ...+.+||+ +++...... +.......+++...++.+|+..
T Consensus        94 ~~~~~~~~~~i~~~~~-g~l~v~~~~------------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A           94 LPNPDSAPYGITEGPN-GDIWFTEMN------------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             CSSTTCCEEEEEECTT-SCEEEEETT------------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEE
T ss_pred             CCCcCCCceeeEECCC-CCEEEEecC------------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEEe
Confidence            221 222233444322 789887543            134778888 555544321 1111223345555447898865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.39  E-value=1.3  Score=38.95  Aligned_cols=131  Identities=14%  Similarity=0.029  Sum_probs=64.7

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE--eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS--LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      ..+..||+.......+.......... ..-..++.  .++.||+.+..             ....+.+||+....-..+.
T Consensus        51 ~~i~~~d~~g~~~~~~~~~~~~~~~~-~~p~~i~~~~~~g~l~v~~~~-------------~~~~i~~~d~~g~~~~~~~  116 (286)
T 1q7f_A           51 HRIQIFDKEGRFKFQFGECGKRDSQL-LYPNRVAVVRNSGDIIVTERS-------------PTHQIQIYNQYGQFVRKFG  116 (286)
T ss_dssp             TEEEEECTTSCEEEEECCBSSSTTCB-SSEEEEEEETTTTEEEEEECG-------------GGCEEEEECTTSCEEEEEC
T ss_pred             CEEEEECCCCcEEEEecccCCCcccc-cCceEEEEEcCCCeEEEEcCC-------------CCCEEEEECCCCcEEEEec
Confidence            34788988755444443211100001 12234444  36889988642             1246889996544333332


Q ss_pred             ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEe
Q 014650          162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG  241 (421)
Q Consensus       162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~G  241 (421)
                      . .....-..+++.. ++++|+....            ...+.+||+.......+.... ......++++..++.||+..
T Consensus       117 ~-~~~~~~~~i~~~~-~g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          117 A-TILQHPRGVTVDN-KGRIIVVECK------------VMRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             T-TTCSCEEEEEECT-TSCEEEEETT------------TTEEEEECTTSCEEEEEECTT-TCSSEEEEEECSSSEEEEEE
T ss_pred             C-ccCCCceEEEEeC-CCCEEEEECC------------CCEEEEEcCCCCEEEEeCCCC-ccCCcEEEEECCCCCEEEEE
Confidence            1 1111122333333 2789988653            235788887655444332111 11123345555447899876


Q ss_pred             cc
Q 014650          242 GY  243 (421)
Q Consensus       242 G~  243 (421)
                      ..
T Consensus       182 ~~  183 (286)
T 1q7f_A          182 NR  183 (286)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.31  E-value=0.31  Score=44.53  Aligned_cols=62  Identities=2%  Similarity=-0.017  Sum_probs=35.6

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      .+|.+|..+.+++.+....... .....++..+++||+.+...          ....+.+||..+++++.+..
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~~-~p~~~a~spdg~l~~~~~~~----------~~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAATQ-NPTYLALSAKDCLYSVDKED----------DEGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEECS-CCCCEEECTTCEEEEEEEET----------TEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeeccC-CcceEEEccCCeEEEEEecC----------CCceEEEEEecCCcEEEeee
Confidence            4777788888877654322221 12222332227788776421          13458889998888766544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.30  E-value=0.17  Score=44.80  Aligned_cols=105  Identities=9%  Similarity=-0.014  Sum_probs=70.6

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ..+.+|+..+..  ..+..+|+.+.+-..-- ++..     ..+.+++..+++||+....              .+.+++
T Consensus        63 ~~~~Ly~stG~~--g~v~~iD~~Tgkv~~~~-l~~~-----~FgeGit~~g~~Ly~ltw~--------------~~~v~V  120 (268)
T 3nok_A           63 HQGHFFESTGHQ--GTLRQLSLESAQPVWME-RLGN-----IFAEGLASDGERLYQLTWT--------------EGLLFT  120 (268)
T ss_dssp             ETTEEEEEETTT--TEEEECCSSCSSCSEEE-ECTT-----CCEEEEEECSSCEEEEESS--------------SCEEEE
T ss_pred             ECCEEEEEcCCC--CEEEEEECCCCcEEeEE-CCCC-----cceeEEEEeCCEEEEEEcc--------------CCEEEE
Confidence            356777776642  22888999887653322 4421     2445677889999998552              467999


Q ss_pred             EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                      ||+.|.+-.  ..++.+-.+.+++..+  +++|+.-|.             +.+..+|+++.+-
T Consensus       121 ~D~~Tl~~~--~ti~~~~eGwGLt~Dg--~~L~vSdGs-------------~~l~~iDp~T~~v  167 (268)
T 3nok_A          121 WSGMPPQRE--RTTRYSGEGWGLCYWN--GKLVRSDGG-------------TMLTFHEPDGFAL  167 (268)
T ss_dssp             EETTTTEEE--EEEECSSCCCCEEEET--TEEEEECSS-------------SEEEEECTTTCCE
T ss_pred             EECCcCcEE--EEEeCCCceeEEecCC--CEEEEECCC-------------CEEEEEcCCCCeE
Confidence            999886643  2233344467777777  899998762             3588999999764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.30  E-value=1.2  Score=40.66  Aligned_cols=86  Identities=13%  Similarity=-0.020  Sum_probs=41.2

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceE--EEEECCCCceEECCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSV--ERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~--~~yd~~t~~W~~~~~~~~~r  223 (421)
                      .+|.+|+.+.+++.+......... .++.-.+...||+.+...         .....+  +.++..+++.+.+...+...
T Consensus        30 ~~~~~d~~~g~~~~~~~~~~~~p~-~l~~spdg~~l~~~~~~~---------~~~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           30 YTFRFNEETGESLPLSDAEVANPS-YLIPSADGKFVYSVNEFS---------KDQAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             EEEEEETTTCCEEEEEEEECSCCC-SEEECTTSSEEEEEECCS---------STTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             EEEEEeCCCCCEEEeecccCCCCc-eEEECCCCCEEEEEEccC---------CCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            456667888888776654111111 122222114577776531         012234  44556557776654433222


Q ss_pred             CCeeEEEEccCCeEEEEec
Q 014650          224 AGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG  242 (421)
                      .....+.. +++.||+.+.
T Consensus       100 ~~p~~~~~-dg~~l~~~~~  117 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANY  117 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEET
T ss_pred             CCcEEEEE-CCCEEEEEEC
Confidence            22233334 4356776653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.29  E-value=0.078  Score=49.17  Aligned_cols=100  Identities=8%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+++.|+.              -..+.+||..+..|+.+..+........++.+..++.+++.|+.+           
T Consensus        22 ~g~~l~~~~~--------------d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----------   76 (377)
T 3dwl_C           22 QRTEFVTTTA--------------TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----------   76 (377)
T ss_dssp             SSSEEECCCS--------------SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----------
T ss_pred             CCCEEEEecC--------------CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----------
Confidence            4566667664              235788898888887776665433333444443226667777653           


Q ss_pred             cceEEEEECCCCc-eEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          200 ISSVERYDVAKNE-WVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       200 ~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                       ..+.+||..+.. |.....+........++.+..++++.+.|+.++
T Consensus        77 -~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  122 (377)
T 3dwl_C           77 -RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR  122 (377)
T ss_dssp             -SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred             -CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence             237888888876 543322222222233444433366666776554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.23  E-value=1.2  Score=42.02  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCC
Q 014650          116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGA  195 (421)
Q Consensus       116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~  195 (421)
                      +...++..++.|+.              -..+.+||..+.+-...  +........+...+  +.+++.|+.+       
T Consensus       138 ~~~~d~~~l~~g~~--------------dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~--~~~l~sg~~d-------  192 (435)
T 1p22_A          138 CLQYDDQKIVSGLR--------------DNTIKIWDKNTLECKRI--LTGHTGSVLCLQYD--ERVIITGSSD-------  192 (435)
T ss_dssp             EEECCSSEEEEEES--------------SSCEEEEESSSCCEEEE--ECCCSSCEEEEECC--SSEEEEEETT-------
T ss_pred             EEEECCCEEEEEeC--------------CCeEEEEeCCCCeEEEE--EcCCCCcEEEEEEC--CCEEEEEcCC-------
Confidence            34447777777774              24688999877653322  22222223334445  7777888764       


Q ss_pred             CCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          196 AGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       196 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                           ..+.+||..+++-...  +........++...  +..++.|+.++.
T Consensus       193 -----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~--~~~l~s~s~dg~  234 (435)
T 1p22_A          193 -----STVRVWDVNTGEMLNT--LIHHCEAVLHLRFN--NGMMVTCSKDRS  234 (435)
T ss_dssp             -----SCEEEEESSSCCEEEE--ECCCCSCEEEEECC--TTEEEEEETTSC
T ss_pred             -----CeEEEEECCCCcEEEE--EcCCCCcEEEEEEc--CCEEEEeeCCCc
Confidence                 2488899988764322  11111122333333  456666766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=95.20  E-value=1.8  Score=39.52  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .++.+|+.+.+...+......     ...+-+..- +..||+.+.... .        ...-.+|.+|..+.+.+.+...
T Consensus        30 ~~~~~d~~~g~~~~~~~~~~~-----~p~~l~~spdg~~l~~~~~~~~-~--------~~~v~~~~~~~~~g~~~~~~~~   95 (361)
T 3scy_A           30 YTFRFNEETGESLPLSDAEVA-----NPSYLIPSADGKFVYSVNEFSK-D--------QAAVSAFAFDKEKGTLHLLNTQ   95 (361)
T ss_dssp             EEEEEETTTCCEEEEEEEECS-----CCCSEEECTTSSEEEEEECCSS-T--------TCEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeCCCCCEEEeecccCC-----CCceEEECCCCCEEEEEEccCC-C--------CCcEEEEEEeCCCCcEEEeeEe
Confidence            356778888888766443111     111222222 445777665310 0        0122345556666777776655


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      +..-.......++. ..||+.+..            ...+.+|+..++
T Consensus        96 ~~~~~~p~~~~~dg-~~l~~~~~~------------~~~v~~~~~~~~  130 (361)
T 3scy_A           96 KTMGADPCYLTTNG-KNIVTANYS------------GGSITVFPIGQD  130 (361)
T ss_dssp             ECSSSCEEEEEECS-SEEEEEETT------------TTEEEEEEBCTT
T ss_pred             ccCCCCcEEEEECC-CEEEEEECC------------CCEEEEEEeCCC
Confidence            43222222222241 557766542            134777887643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.19  E-value=0.38  Score=44.17  Aligned_cols=101  Identities=7%  Similarity=0.033  Sum_probs=54.4

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCC-ccceEEEEEccCCEEEEEcCCccccccCCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  198 (421)
                      ++.+++.||.+              ..+.+||..+.+|.....+..+ ...-.++.+..++..++.|+.+          
T Consensus        27 ~g~~las~~~D--------------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D----------   82 (345)
T 3fm0_A           27 AGTLLASCGGD--------------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD----------   82 (345)
T ss_dssp             TSSCEEEEETT--------------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----------
T ss_pred             CCCEEEEEcCC--------------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----------
Confidence            56677777742              3578888888877543322222 1222333343226777777754          


Q ss_pred             ccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       199 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                        ..+.+||..+..++.+..+........++.+..++++.+.|+.++.
T Consensus        83 --~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~  128 (345)
T 3fm0_A           83 --ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS  128 (345)
T ss_dssp             --SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             --CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe
Confidence              2367788777766544333222222334444333677777776553

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.16  E-value=1.2  Score=40.69  Aligned_cols=89  Identities=9%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ..+.+||....+++.+..+......-.++.+..+  +.+++.|+.+            ..+.+||..+++|..+..+...
T Consensus        33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~  100 (379)
T 3jrp_A           33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------------GKVLIWKEENGRWSQIAVHAVH  100 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------------SCEEEEEEETTEEEEEEEECCC
T ss_pred             CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------------CEEEEEEcCCCceeEeeeecCC
Confidence            3588888876666665544433222333333211  4566666653            2488899999987765444333


Q ss_pred             CCCeeEEEEccC--CeEEEEeccCC
Q 014650          223 RAGCVGFVAEES--GEFWVMGGYGD  245 (421)
Q Consensus       223 r~~~~~~~~~~~--~~iyv~GG~~~  245 (421)
                      .....++.+..+  +.+++.|+.++
T Consensus       101 ~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A          101 SASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CcceEEEEeCCCCCCCEEEEecCCC
Confidence            333344444433  45666666554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.16  E-value=1.4  Score=38.13  Aligned_cols=82  Identities=9%  Similarity=-0.061  Sum_probs=41.4

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||+.+.......... ...-++++...+ +++|+... +            ..+.+||+.......+....  ..
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~-g~l~v~~~-~------------~~i~~~d~~~~~~~~~~~~~--~~  108 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGA-GTVYVTDF-N------------NRVVTLAAGSNNQTVLPFDG--LN  108 (270)
T ss_dssp             CEEEEECC-----EECCCCS-CCSCCCEEECTT-CCEEEEET-T------------TEEEEECTTCSCCEECCCCS--CS
T ss_pred             CcEEEecCCCcccceEeeCC-cCCcceeEECCC-CCEEEEcC-C------------CEEEEEeCCCceEeeeecCC--cC
Confidence            46889998776654433211 111223444332 78888865 2            24788998887654443211  11


Q ss_pred             CeeEEEEccCCeEEEEecc
Q 014650          225 GCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~  243 (421)
                      ...++++..+++||+....
T Consensus       109 ~p~~i~~~~~g~l~v~~~~  127 (270)
T 1rwi_B          109 YPEGLAVDTQGAVYVADRG  127 (270)
T ss_dssp             SEEEEEECTTCCEEEEEGG
T ss_pred             CCcceEECCCCCEEEEECC
Confidence            2334555534789987543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.15  E-value=2  Score=40.00  Aligned_cols=136  Identities=10%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      ..+++.+.+   ..+..||..+++..........     ..-.+++.. ++.++++|+.              ...+.+|
T Consensus       104 ~~l~~~~~d---~~v~lw~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~~--------------dg~i~iw  161 (401)
T 4aez_A          104 LNVVAVALE---RNVYVWNADSGSVSALAETDES-----TYVASVKWSHDGSFLSVGLG--------------NGLVDIY  161 (401)
T ss_dssp             TSEEEEEET---TEEEEEETTTCCEEEEEECCTT-----CCEEEEEECTTSSEEEEEET--------------TSCEEEE
T ss_pred             CCEEEEECC---CeEEEeeCCCCcEeEeeecCCC-----CCEEEEEECCCCCEEEEECC--------------CCeEEEE
Confidence            334444432   3488999988887655333211     111222222 5566666664              2358899


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV  230 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~  230 (421)
                      |..+.+-...  +........++..+  +.+++.|+.+            ..+.+||..+..-.. ..+........++.
T Consensus       162 d~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~~~~~d------------g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~  224 (401)
T 4aez_A          162 DVESQTKLRT--MAGHQARVGCLSWN--RHVLSSGSRS------------GAIHHHDVRIANHQI-GTLQGHSSEVCGLA  224 (401)
T ss_dssp             ETTTCCEEEE--ECCCSSCEEEEEEE--TTEEEEEETT------------SEEEEEETTSSSCEE-EEEECCSSCEEEEE
T ss_pred             ECcCCeEEEE--ecCCCCceEEEEEC--CCEEEEEcCC------------CCEEEEecccCccee-eEEcCCCCCeeEEE
Confidence            9887653322  22222233344445  6677777753            347888887433111 01111111223344


Q ss_pred             EccCCeEEEEeccCCC
Q 014650          231 AEESGEFWVMGGYGDS  246 (421)
Q Consensus       231 ~~~~~~iyv~GG~~~~  246 (421)
                      +..++.+++.|+.++.
T Consensus       225 ~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          225 WRSDGLQLASGGNDNV  240 (401)
T ss_dssp             ECTTSSEEEEEETTSC
T ss_pred             EcCCCCEEEEEeCCCe
Confidence            4333677777776553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.14  E-value=0.87  Score=40.76  Aligned_cols=88  Identities=8%  Similarity=0.084  Sum_probs=42.7

Q ss_pred             eEEEEeCccCcee-eccccC--CCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          146 SAFRFNFLTFSWE-RIAPMI--SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       146 ~v~~yd~~t~~W~-~~~~~~--~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      .+.+||..+.... .+..+.  ........+.+..+++.+++|+.+            ..+.+||..+.+......+...
T Consensus        73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~  140 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA------------STLSIWDLAAPTPRIKAELTSS  140 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS------------SEEEEEECCCC--EEEEEEECS
T ss_pred             eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC------------CcEEEEECCCCCcceeeecccC
Confidence            5888888775422 111111  112222333333226666666643            3588899988875443332222


Q ss_pred             CCCeeEEEEccCCeEEEEeccCC
Q 014650          223 RAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       223 r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      .....++.+..+++.++.|+.++
T Consensus       141 ~~~i~~~~~~~~~~~l~~~~~dg  163 (337)
T 1gxr_A          141 APACYALAISPDSKVCFSCCSDG  163 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCceEEEEECCCCCEEEEEeCCC
Confidence            22233444433366777776554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.10  E-value=0.78  Score=41.27  Aligned_cols=53  Identities=8%  Similarity=-0.040  Sum_probs=27.6

Q ss_pred             CeEEEEeCc--cCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECC
Q 014650          145 DSAFRFNFL--TFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVA  209 (421)
Q Consensus       145 ~~v~~yd~~--t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~  209 (421)
                      ..+.+|+..  +.+++.+..++....-..++...++..+|+.+..+            ..+.+||..
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~i~~~d~~  114 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLE  114 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT------------TEEEEEEEE
T ss_pred             CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC------------CeEEEEECC
Confidence            457777665  77777665554333223333332213466665421            247777773

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.02  E-value=2.5  Score=41.99  Aligned_cols=72  Identities=13%  Similarity=0.229  Sum_probs=44.8

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeC-ccCc--eeeccccCCC--------ccceEEEEEccCCEEEE
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNF-LTFS--WERIAPMISP--------RGSFACAAVRSLNQIIV  183 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv  183 (421)
                      +.++.++.||+....              ...++.+|. .|.+  |+.-......        ....+.++.+  ++||+
T Consensus        57 ~P~v~~g~vyv~~~~--------------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v  120 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF--------------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGA--GQIVK  120 (571)
T ss_dssp             CCEEETTEEEEECST--------------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEET--TEEEE
T ss_pred             ccEEECCEEEEEeCC--------------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEEC--CEEEE
Confidence            345679999988652              135888988 6654  8764332111        1122345566  88988


Q ss_pred             EcCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650          184 AGGGSRHSLFGAAGSRISSVERYDVAKNE--WVS  215 (421)
Q Consensus       184 ~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~  215 (421)
                      ....             ..+..+|.++.+  |+.
T Consensus       121 ~~~d-------------g~l~alD~~tG~~~W~~  141 (571)
T 2ad6_A          121 KQAN-------------GHLLALDAKTGKINWEV  141 (571)
T ss_dssp             ECTT-------------SEEEEEETTTCCEEEEE
T ss_pred             EeCC-------------CEEEEEECCCCCEEEEe
Confidence            7541             248889998875  875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.87  E-value=1.2  Score=40.08  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe----CCEEEEEcccccCCCCCCCCCCCCCC
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL----GPYIYLLGGSHFDARSFPLDRPLPSD  145 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (421)
                      ..+++...+.+   ..+..||..+++...+..+...     ......+..    ++.+++.|+.+              .
T Consensus        24 ~g~~lasgs~D---~~v~lwd~~~~~~~~~~~l~gH-----~~~V~~v~~~~~~~~~~l~s~s~D--------------~   81 (316)
T 3bg1_A           24 YGTRLATCSSD---RSVKIFDVRNGGQILIADLRGH-----EGPVWQVAWAHPMYGNILASCSYD--------------R   81 (316)
T ss_dssp             GGCEEEEEETT---TEEEEEEEETTEEEEEEEEECC-----SSCEEEEEECCGGGSSCEEEEETT--------------S
T ss_pred             CCCEEEEEeCC---CeEEEEEecCCCcEEEEEEcCC-----CccEEEEEeCCCCCCCEEEEEECC--------------C
Confidence            34445444443   3466788766544332222211     111122222    25566677642              3


Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCCccceEEEEECCCC-ceEE
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN-EWVS  215 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~-~W~~  215 (421)
                      .+.+||..+.+|..+..+..-...-.++.+..+  +.+++.|+.+            ..+.+||..+. .|..
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------------~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------------GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------------SCEEEEEECSSSCEEE
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------------CCEEEEecCCCCCcce
Confidence            588899988777655443322222223333221  4566777754            23667777665 4654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.85  E-value=1.5  Score=39.34  Aligned_cols=94  Identities=6%  Similarity=-0.023  Sum_probs=46.3

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCCCcE--EECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCC
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAANRAC--RPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W--~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      ...+.+|+.+..  ...++.+|+.+.+.  ..+..-..       ..++++..  +++|| .+...  +         ..
T Consensus        49 ~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~-~~~~~--~---------~~  107 (331)
T 3u4y_A           49 SDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQEGQS-------SMADVDITPDDQFAV-TVTGL--N---------HP  107 (331)
T ss_dssp             SSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEECSS-------CCCCEEECTTSSEEE-ECCCS--S---------SS
T ss_pred             CCCCEEEEEeCC--CCeEEEEECCCCceeEEecccCCC-------CccceEECCCCCEEE-EecCC--C---------Cc
Confidence            345556665542  23688999988764  22211111       11212222  45677 33321  0         11


Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCC-EEEEEcC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLN-QIIVAGG  186 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~-~iyv~GG  186 (421)
                      ..+++||..+.+-...  ++.....+.++...+ + .+|+.+.
T Consensus       108 ~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spd-g~~l~~~~~  147 (331)
T 3u4y_A          108 FNMQSYSFLKNKFIST--IPIPYDAVGIAISPN-GNGLILIDR  147 (331)
T ss_dssp             CEEEEEETTTTEEEEE--EECCTTEEEEEECTT-SSCEEEEEE
T ss_pred             ccEEEEECCCCCeEEE--EECCCCccceEECCC-CCEEEEEec
Confidence            2799999988765443  222222234443332 4 5887755

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.82  E-value=1.9  Score=38.77  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+.+..              ...+++||+.+.+.+.+.... .. .....++..++++|+.+...        ...
T Consensus        55 ~g~l~~~~~~--------------~~~i~~~d~~~~~~~~~~~~~-~~-~~~~i~~~~dg~l~v~~~~~--------~~~  110 (333)
T 2dg1_A           55 QGQLFLLDVF--------------EGNIFKINPETKEIKRPFVSH-KA-NPAAIKIHKDGRLFVCYLGD--------FKS  110 (333)
T ss_dssp             TSCEEEEETT--------------TCEEEEECTTTCCEEEEEECS-SS-SEEEEEECTTSCEEEEECTT--------SSS
T ss_pred             CCCEEEEECC--------------CCEEEEEeCCCCcEEEEeeCC-CC-CcceEEECCCCcEEEEeCCC--------CCC
Confidence            5778887653              246999999998877654211 11 22233333227888876432        112


Q ss_pred             cceEEEEECCCCceEE-CCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          200 ISSVERYDVAKNEWVS-MDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      ...+.+||+++...+. +.... .......+.+..++.+|+...
T Consensus       111 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIEDLS-TAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             CCEEEEECTTSCSCEEEECSSS-SCCCEEEEEECTTSCEEEEEC
T ss_pred             CceEEEEeCCCCEEEEEEccCc-cCCcccceEECCCCCEEEEec
Confidence            2468899998887653 22211 111233444544478888643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.77  E-value=1.9  Score=39.24  Aligned_cols=144  Identities=10%  Similarity=0.073  Sum_probs=69.3

Q ss_pred             CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ...++...+.+   ..+..||..+++|.....+...    .......+..  ++..++.|+.+              ..+
T Consensus        27 ~g~~las~~~D---~~i~iw~~~~~~~~~~~~~~~~----h~~~v~~~~~sp~g~~l~s~s~D--------------~~v   85 (345)
T 3fm0_A           27 AGTLLASCGGD---RRIRIWGTEGDSWICKSVLSEG----HQRTVRKVAWSPCGNYLASASFD--------------ATT   85 (345)
T ss_dssp             TSSCEEEEETT---SCEEEEEEETTEEEEEEEECSS----CSSCEEEEEECTTSSEEEEEETT--------------SCE
T ss_pred             CCCEEEEEcCC---CeEEEEEcCCCcceeeeeeccc----cCCcEEEEEECCCCCEEEEEECC--------------CcE
Confidence            44455554443   2367788877776532212110    0111222222  56666677642              347


Q ss_pred             EEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc-eEECCCCCCCCCCe
Q 014650          148 FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE-WVSMDEMPRFRAGC  226 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~  226 (421)
                      .+||..+..+..+..+..-.....++.+..++++++.|+.+            ..+.+||..+.. +..+..+.......
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------------KSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT------------SCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC------------CeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            77787776665544443222223333443226777777754            237778876643 32222221111122


Q ss_pred             eEEEEccCCeEEEEeccCCC
Q 014650          227 VGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       227 ~~~~~~~~~~iyv~GG~~~~  246 (421)
                      .++....++.+.+.|+.++.
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~  173 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDT  173 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEeCCCc
Confidence            33444333667777776553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.72  E-value=2.3  Score=38.39  Aligned_cols=50  Identities=14%  Similarity=0.343  Sum_probs=27.7

Q ss_pred             ceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEec
Q 014650          332 RWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIF  400 (421)
Q Consensus       332 ~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  400 (421)
                      .|..+..++... ...-.+++...+.+++.||.++                  .|.+||..+++|..+.
T Consensus       238 ~~~~~~~~~~~h-~~~v~~v~~s~~~~l~s~~~dg------------------~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          238 EWVCEAILPDVH-KRQVYNVAWGFNGLIASVGADG------------------VLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             EEEEEEECCSCC-SSCEEEEEECTTSCEEEEETTS------------------CEEEEEEETTEEEEEE
T ss_pred             eeEEeeeccccc-ccceEEEEEcCCCEEEEEeCCC------------------EEEEEEcCCCceEEEe
Confidence            465554443211 1122333333556667777653                  5778888888886654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=94.60  E-value=0.93  Score=46.67  Aligned_cols=89  Identities=9%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ..+.+||..+.++..+..+......-.++.+..+  +..++.|+.+            ..+.+||..+++|..+..+...
T Consensus        31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------------g~I~vwd~~~~~~~~~~~~~~h   98 (753)
T 3jro_A           31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------------GKVLIWKEENGRWSQIAVHAVH   98 (753)
T ss_dssp             TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------------SCEEEEEEETTEEEEEEEECCC
T ss_pred             CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------------CeEEEEECCCCcccccccccCC
Confidence            4688888887777766555433333334444221  4566666654            2488899999887665444333


Q ss_pred             CCCeeEEEEccC--CeEEEEeccCC
Q 014650          223 RAGCVGFVAEES--GEFWVMGGYGD  245 (421)
Q Consensus       223 r~~~~~~~~~~~--~~iyv~GG~~~  245 (421)
                      .....++.+..+  +.+++.|+.++
T Consensus        99 ~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           99 SASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCCeEEEEECCCCCCCEEEEEeCCC
Confidence            333344444432  56777777654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.37  E-value=2.5  Score=38.85  Aligned_cols=93  Identities=10%  Similarity=0.084  Sum_probs=46.2

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe----CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL----GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI  160 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~  160 (421)
                      .+..||..+.+-...-..+.+       ..++...    ++.+++.|+.              ...+.+||..+.+-.. 
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~d~~~~~~~~-  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNFEET-------VYSHHMSPVSTKHCLVAVGTR--------------GPKVQLCDLKSGSCSH-  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEECSSC-------EEEEEECSSCSSCCEEEEEES--------------SSSEEEEESSSSCCCE-
T ss_pred             eEEEeeCCCCccceeccCCCc-------eeeeEeecCCCCCcEEEEEcC--------------CCeEEEEeCCCcceee-
Confidence            477888887665443333221       1122221    3346666663              2458889987654321 


Q ss_pred             cccCCCccceEEEEEccCCE-EEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          161 APMISPRGSFACAAVRSLNQ-IIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       161 ~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                       .+........+..+..++. +++.|+.+            ..+.+||..+..
T Consensus       181 -~~~~~~~~v~~~~~~~~~~~ll~~~~~d------------g~i~i~d~~~~~  220 (408)
T 4a11_B          181 -ILQGHRQEILAVSWSPRYDYILATASAD------------SRVKLWDVRRAS  220 (408)
T ss_dssp             -EECCCCSCEEEEEECSSCTTEEEEEETT------------SCEEEEETTCSS
T ss_pred             -eecCCCCcEEEEEECCCCCcEEEEEcCC------------CcEEEEECCCCC
Confidence             1221222223333322133 67777754            237788887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.34  E-value=1.8  Score=39.82  Aligned_cols=89  Identities=4%  Similarity=-0.009  Sum_probs=46.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEcc-CCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRS-LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ..+.+||..+.+....-..........++.+.. ++.+++.|+.+            ..+.+||..+.....+.......
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~  163 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------------GATTLRDFSGSVIQVFAKTDSWD  163 (383)
T ss_dssp             SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------------TEEEEEETTSCEEEEEECCCCSS
T ss_pred             CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------------CEEEEEECCCCceEEEeccCCCC
Confidence            358889988877655433222222223333321 15677777653            34788998877665543322211


Q ss_pred             CCeeEEEEccCCeEEEEeccCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ....++.+..++.+.+.|+.++
T Consensus       164 ~~v~~~~~~~~~~~l~~~~~d~  185 (383)
T 3ei3_B          164 YWYCCVDVSVSRQMLATGDSTG  185 (383)
T ss_dssp             CCEEEEEEETTTTEEEEEETTS
T ss_pred             CCeEEEEECCCCCEEEEECCCC
Confidence            2223333333366777776654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.05  E-value=3.2  Score=37.41  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=28.4

Q ss_pred             ceEEEeCCCCceeEecccCCCCCCCCceEEE-EeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCccee
Q 014650          322 DILRYDMGLNRWLKETTIPEIRPCKKPLGFI-VLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW  396 (421)
Q Consensus       322 ~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  396 (421)
                      .+.+||..+.+=..  .+...  ...-.+++ .-++++++.|+.++                  .|.+||.+++..
T Consensus       296 ~i~~~d~~~~~~~~--~~~~~--~~~v~~~~~s~~~~~l~s~~~dg------------------~v~iw~~~~~~~  349 (369)
T 3zwl_B          296 EARFYHKIFEEEIG--RVQGH--FGPLNTVAISPQGTSYASGGEDG------------------FIRLHHFEKSYF  349 (369)
T ss_dssp             EEEEEETTTCCEEE--EEECC--SSCEEEEEECTTSSEEEEEETTS------------------EEEEEEECHHHH
T ss_pred             eeEEEecCCCcchh--heecc--cCcEEEEEECCCCCEEEEEcCCC------------------eEEEEECccccc
Confidence            57888877654222  22210  01112222 22678888887663                  577787766543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.04  E-value=3  Score=36.92  Aligned_cols=65  Identities=11%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccC--CEEEEEcCCccccccCCCCC
Q 014650          121 PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL--NQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       121 ~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~  198 (421)
                      +.+++.|+.+              ..+.+||..+.+|..+..+........++.+..+  +.+++.|+.+          
T Consensus        67 g~~l~s~s~D--------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d----------  122 (297)
T 2pm7_B           67 GTILASCSYD--------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD----------  122 (297)
T ss_dssp             CSEEEEEETT--------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT----------
T ss_pred             CCEEEEEcCC--------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC----------
Confidence            5667777642              4688999988887665544322222233333211  3466666653          


Q ss_pred             ccceEEEEECCCC
Q 014650          199 RISSVERYDVAKN  211 (421)
Q Consensus       199 ~~~~~~~yd~~t~  211 (421)
                        ..+.+||..+.
T Consensus       123 --~~v~~wd~~~~  133 (297)
T 2pm7_B          123 --GKVSVVEFKEN  133 (297)
T ss_dssp             --SEEEEEEBCSS
T ss_pred             --CcEEEEEecCC
Confidence              23667777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.04  E-value=2.2  Score=39.14  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEE-ccCCEEEEEcCCccccccCCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~  198 (421)
                      ++..++.|+.+              ..+.+||..+.+-..  .+......-.++.+ .+.+.+++.|+.+          
T Consensus       150 dg~~l~sgs~d--------------g~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~~~s~~~d----------  203 (357)
T 4g56_B          150 DGTQAVSGGKD--------------FSVKVWDLSQKAVLK--SYNAHSSEVNCVAACPGKDTIFLSCGED----------  203 (357)
T ss_dssp             SSSEEEEEETT--------------SCEEEEETTTTEEEE--EECCCSSCEEEEEECTTCSSCEEEEETT----------
T ss_pred             CCCEEEEEeCC--------------CeEEEEECCCCcEEE--EEcCCCCCEEEEEEccCCCceeeeeccC----------
Confidence            56666777642              358889988765332  22211112222222 2113466677653          


Q ss_pred             ccceEEEEECCCCceEECCCCCCCCCCeeEEEEc-cCCeEEEEeccCCC
Q 014650          199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE-ESGEFWVMGGYGDS  246 (421)
Q Consensus       199 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~~iyv~GG~~~~  246 (421)
                        ..+.+||..+.+-..............++.+. +++.+++.|+.++.
T Consensus       204 --g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~  250 (357)
T 4g56_B          204 --GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN  250 (357)
T ss_dssp             --SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred             --CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc
Confidence              23778888876533222222222222333332 22567777776553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.03  E-value=2  Score=38.87  Aligned_cols=89  Identities=7%  Similarity=0.053  Sum_probs=42.7

Q ss_pred             CeEEEEeCcc--CceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          145 DSAFRFNFLT--FSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       145 ~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ..+.+||..+  ..++.+..+..-...-..+.+..++.+++.|+.+            ..+.++|..+..|+.+..+...
T Consensus       129 ~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D------------~~i~iW~~~~~~~~~~~~~~~h  196 (330)
T 2hes_X          129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD------------DTVRIWKDYDDDWECVAVLNGH  196 (330)
T ss_dssp             SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT------------SCEEEEEEETTEEEEEEEECCC
T ss_pred             CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC------------CeEEEEECCCCCeeEEEEccCC
Confidence            3578888733  3344443332222222333333226677777754            2367788777777654433222


Q ss_pred             CCCeeEEEEccC--CeEEEEeccCC
Q 014650          223 RAGCVGFVAEES--GEFWVMGGYGD  245 (421)
Q Consensus       223 r~~~~~~~~~~~--~~iyv~GG~~~  245 (421)
                      .....++.+..+  +...+.|+.++
T Consensus       197 ~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          197 EGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             SSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             CCcEEEEEecCCCCeeEEEEEeCCC
Confidence            212223333221  33455666554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.88  E-value=3.9  Score=37.67  Aligned_cols=42  Identities=2%  Similarity=0.037  Sum_probs=20.5

Q ss_pred             eEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      .+.+||..+.+-...  +........++.+..++.+++.|+.++
T Consensus       228 ~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          228 AIFVYQITEKTPTGK--LIGHHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             CEEEEETTCSSCSEE--ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEEcCCCceeee--eccCCCceEEEEECCCCCEEEEEcCCC
Confidence            488899887642211  111111222333332366777776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=93.86  E-value=3.2  Score=36.60  Aligned_cols=91  Identities=11%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+++..              ...+++||+.+. .+.+.. +.  ......++..++++|+....            
T Consensus        39 g~~l~~~~~~--------------~~~i~~~~~~~~-~~~~~~-~~--~~~~~l~~~~dg~l~v~~~~------------   88 (296)
T 3e5z_A           39 RSAVIFSDVR--------------QNRTWAWSDDGQ-LSPEMH-PS--HHQNGHCLNKQGHLIACSHG------------   88 (296)
T ss_dssp             GTEEEEEEGG--------------GTEEEEEETTSC-EEEEES-SC--SSEEEEEECTTCCEEEEETT------------
T ss_pred             CCEEEEEeCC--------------CCEEEEEECCCC-eEEEEC-CC--CCcceeeECCCCcEEEEecC------------
Confidence            3458888764              246999999987 555432 11  12223333222788877542            


Q ss_pred             cceEEEEECCCCceEECCCCCC-C-CCCeeEEEEccCCeEEEE
Q 014650          200 ISSVERYDVAKNEWVSMDEMPR-F-RAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~-~-r~~~~~~~~~~~~~iyv~  240 (421)
                      ...+.+||+.+++.+.+..... . ......+++..++.||+.
T Consensus        89 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A           89 LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred             CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence            2358899998888766532111 1 111123444444889987

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.83  E-value=4.1  Score=37.73  Aligned_cols=100  Identities=7%  Similarity=0.014  Sum_probs=50.6

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceee-----ccccCCCccceEEEEEccCC-EEEEEcCCcccccc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWER-----IAPMISPRGSFACAAVRSLN-QIIVAGGGSRHSLF  193 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~~~~~-~iyv~GG~~~~~~~  193 (421)
                      ++.+++.|+.+              ..+.+||..+.....     +..+........++.+..++ .+++.|+.+     
T Consensus        93 ~~~~l~s~s~d--------------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----  153 (402)
T 2aq5_A           93 NDNVIASGSED--------------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----  153 (402)
T ss_dssp             CTTEEEEEETT--------------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----
T ss_pred             CCCEEEEEeCC--------------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----
Confidence            56677777642              468889988765421     22222112222333333213 577777753     


Q ss_pred             CCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          194 GAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       194 ~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                             ..+.+||..+.+....-..........++.+..++.+++.|+.++
T Consensus       154 -------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  198 (402)
T 2aq5_A          154 -------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK  198 (402)
T ss_dssp             -------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS
T ss_pred             -------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC
Confidence                   248889998876543211011111223344432366667776554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.80  E-value=4.2  Score=41.25  Aligned_cols=71  Identities=11%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCC--------ccceEEEEEccCCEEEEEc
Q 014650          116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISP--------RGSFACAAVRSLNQIIVAG  185 (421)
Q Consensus       116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv~G  185 (421)
                      .++.++.||+....               ..++.+|..|.+  |+.-...+..        ....+.++.+  ++||+..
T Consensus        73 P~v~~g~vyv~~~~---------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~v~v~~  135 (677)
T 1kb0_A           73 PVVVDGIMYVSASW---------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK--GKVYVGA  135 (677)
T ss_dssp             CEEETTEEEEECGG---------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET--TEEEEEC
T ss_pred             CEEECCEEEEECCC---------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC--CEEEEEc
Confidence            45679999988752               358888877654  8764432210        1122445566  8888864


Q ss_pred             CCccccccCCCCCccceEEEEECCCCc--eEEC
Q 014650          186 GGSRHSLFGAAGSRISSVERYDVAKNE--WVSM  216 (421)
Q Consensus       186 G~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~  216 (421)
                      ..             ..+..+|.++++  |+.-
T Consensus       136 ~d-------------g~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A          136 WD-------------GRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TT-------------SEEEEEETTTCCEEEEEE
T ss_pred             CC-------------CEEEEEECCCCCEEeeec
Confidence            31             348889998876  8763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.79  E-value=4.6  Score=38.17  Aligned_cols=66  Identities=12%  Similarity=-0.003  Sum_probs=36.7

Q ss_pred             CceEEEeC--C-CCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceee
Q 014650          321 FDILRYDM--G-LNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWR  397 (421)
Q Consensus       321 ~~v~~yd~--~-~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  397 (421)
                      ..|.+||.  . ..++..+..+...   ....+++...+.+++..+......         -......++.++.++++|+
T Consensus       330 ~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~---------~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          330 KCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSG---------VQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCS---------SCCCSEEEEEEETTTTEEE
T ss_pred             CeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCC---------CCCcceEEEEEEcCCCeEE
Confidence            46777777  2 3456666555432   133455566677877765432110         0011247788888888885


Q ss_pred             E
Q 014650          398 Y  398 (421)
Q Consensus       398 ~  398 (421)
                      .
T Consensus       398 ~  398 (450)
T 2vdu_B          398 V  398 (450)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.70  E-value=0.026  Score=56.44  Aligned_cols=36  Identities=17%  Similarity=0.591  Sum_probs=29.1

Q ss_pred             ccCCCChHHHHHHHhcCCC-cchhHHHHhhhHhHHhh
Q 014650           19 TLIPGLPNDVASLILAFVP-YSHQSRLKQTCRSWFLF   54 (421)
Q Consensus        19 ~~~~~Lp~dl~~~~l~~lp-~~~~~~~~~v~k~W~~l   54 (421)
                      .+|..||+|++.+||+++| ..+..+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4678899999999999999 89999999999999988

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=93.46  E-value=4.8  Score=38.01  Aligned_cols=83  Identities=6%  Similarity=0.049  Sum_probs=40.9

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+-..  .+.........+.+..++..++.|+.+            ..+.+||..+.+-...  +.....
T Consensus       290 ~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~d------------g~i~vwd~~~~~~~~~--~~~h~~  353 (464)
T 3v7d_B          290 NTLIVWDVAQMKCLY--ILSGHTDRIYSTIYDHERKRCISASMD------------TTIRIWDLENGELMYT--LQGHTA  353 (464)
T ss_dssp             SCEEEEETTTTEEEE--EECCCSSCEEEEEEETTTTEEEEEETT------------SCEEEEETTTTEEEEE--ECCCSS
T ss_pred             CeEEEEECCCCcEEE--EecCCCCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCcEEEE--EeCCCC
Confidence            358889987654322  122112222222332225666677653            2488899988763321  111111


Q ss_pred             CeeEEEEccCCeEEEEeccCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ...++...  +...+.|+.++
T Consensus       354 ~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          354 LVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             CEEEEEEC--SSEEEEEETTS
T ss_pred             cEEEEEEc--CCEEEEEeCCC
Confidence            22333443  56667776654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.45  E-value=8  Score=39.84  Aligned_cols=122  Identities=7%  Similarity=0.024  Sum_probs=65.2

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE-eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc-
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS-LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP-  162 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~-  162 (421)
                      -+.+||+.++++..+.......  . ..-.+++. .++.|++...                ..+++||+.++++..+.. 
T Consensus       108 Gl~~yd~~~~~f~~~~~~~~~~--~-~~i~~i~~d~~g~lwi~t~----------------~gl~~~~~~~~~~~~~~~~  168 (795)
T 4a2l_A          108 GLSRYDEEKDIFQNFFYEKNGK--H-LQVNGIEEISPEQLLISTP----------------EGLIMFDIKESKFIDDSFS  168 (795)
T ss_dssp             CEEEEETTTTEEEEECCEETTE--E-CCCCEEEEEETTEEEEEET----------------TEEEEEETTTTEEECSSSC
T ss_pred             chheeCCCCCeEEeccccccCC--C-ceEEEEEECCCCCEEEEEC----------------CceEEEECCCCEEEeccCC
Confidence            4789999998887764322110  0 00122333 3678887532                358999999888776543 


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEE
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~  240 (421)
                      .+....-.++....+ +.|++....             ..+.+||+.+++++.....+. .....++....++.|++.
T Consensus       169 ~~~~~~i~~i~~d~~-g~lwigt~~-------------~Gl~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g~lwig  231 (795)
T 4a2l_A          169 TAMHKTIASTLYRQG-DQIYIGTST-------------DGLYTYSITQKTFEKVIPILG-TKQIQAILQQSPTRIWVA  231 (795)
T ss_dssp             HHHHTCCEEEEEEET-TEEEEEESS-------------SCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEE
T ss_pred             CCCCcceEEEEECCC-CCEEEEECC-------------CCEEEEeCCCCeEEEecCCCC-CCeeEEEEEcCCCCEEEE
Confidence            111110122333222 788874211             127889999999887643321 112233444434778774

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.41  E-value=1.2  Score=42.10  Aligned_cols=101  Identities=13%  Similarity=0.046  Sum_probs=51.3

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEc-cCCEEEEEcCCccccccCCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR-SLNQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  198 (421)
                      ++.+++.|+.+              ..|.+||..+.+-..+-.+......-.++.+. .++.+++.|+.+          
T Consensus       131 ~~~~lasGs~d--------------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D----------  186 (435)
T 4e54_B          131 HPSTVAVGSKG--------------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME----------  186 (435)
T ss_dssp             CTTCEEEEETT--------------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS----------
T ss_pred             CCCEEEEEeCC--------------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC----------
Confidence            34577777742              35888888776543332221111111222221 115666777754          


Q ss_pred             ccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       199 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                        ..+.++|.+++.-..+...........++.+..++++.+.|+.++.
T Consensus       187 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~  232 (435)
T 4e54_B          187 --GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN  232 (435)
T ss_dssp             --SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred             --CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc
Confidence              2377889888765544332221111223333333777888876653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.12  E-value=4.4  Score=35.90  Aligned_cols=86  Identities=10%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+....-  .........+.+..++++++.|+.+            ..+.+||..+.+-...  +.....
T Consensus        45 g~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d------------~~i~vwd~~~~~~~~~--~~~~~~  108 (312)
T 4ery_A           45 KLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSNLLVSASDD------------KTLKIWDVSSGKCLKT--LKGHSN  108 (312)
T ss_dssp             SCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETT------------SEEEEEETTTCCEEEE--EECCSS
T ss_pred             CeEEEEeCCCcccchhh--ccCCCceEEEEEcCCCCEEEEECCC------------CEEEEEECCCCcEEEE--EcCCCC
Confidence            35778888776654321  1111222233333226677777753            2478899887753221  111111


Q ss_pred             CeeEEEEccCCeEEEEeccCCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ...++.+..++.+.+.|+.++.
T Consensus       109 ~v~~~~~~~~~~~l~s~~~d~~  130 (312)
T 4ery_A          109 YVFCCNFNPQSNLIVSGSFDES  130 (312)
T ss_dssp             CEEEEEECSSSSEEEEEETTSC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCc
Confidence            1223333333667777776553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=93.04  E-value=4.3  Score=35.61  Aligned_cols=57  Identities=11%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEE-eCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEe
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIV-LDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI  399 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i  399 (421)
                      ..|.+||..+.+....-..+.    ..-.+++. .+++ ++.|+.++                  .|.+||.+++++...
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~-~~~~~~dg------------------~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPA----ISIWSVDCMSNGD-IIVGSSDN------------------LVRIFSQEKSRWASE  302 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSS----SCEEEEEECTTSC-EEEEETTS------------------CEEEEESCGGGCCC-
T ss_pred             CEEEEEECCCCceeEEEeccC----ceEEEEEEccCCC-EEEEeCCC------------------cEEEEeCCCCceeeh
Confidence            468888888775444322222    11223332 3456 55676552                  588999999888654


Q ss_pred             c
Q 014650          400 F  400 (421)
Q Consensus       400 ~  400 (421)
                      .
T Consensus       303 ~  303 (313)
T 3odt_A          303 D  303 (313)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.95  E-value=8.3  Score=39.44  Aligned_cols=127  Identities=9%  Similarity=0.006  Sum_probs=62.3

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccC------ce
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTF------SW  157 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~------~W  157 (421)
                      -+.+||+.++++................-+++... ++.|+|- ..              ..-+++||+.+.      .+
T Consensus       393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig-T~--------------~~Gl~~~~~~~~~~~~~~~~  457 (758)
T 3ott_A          393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIS-TC--------------LGGIFVVDKHKLMQSTSGQY  457 (758)
T ss_dssp             EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEE-ES--------------SSCEEEEEHHHHHHCCSSEE
T ss_pred             cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEE-EC--------------CCceEEEccccccccCCcce
Confidence            47889999988876531111000000112333333 4678763 21              123788887641      22


Q ss_pred             e---e---ccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC-CCCeeEEE
Q 014650          158 E---R---IAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF-RAGCVGFV  230 (421)
Q Consensus       158 ~---~---~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~  230 (421)
                      .   .   ...++... -.++.... ++.|++++|..            .-+.+||+.+++++.+..-... .....++.
T Consensus       458 ~~~~~~~~~~~l~~~~-i~~i~~d~-~g~lWi~~~t~------------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~  523 (758)
T 3ott_A          458 IAEQNYSVHNGLSGMF-INQIIPDN-EGNVWVLLYNN------------KGIDKINPRTREVTKLFADELTGEKSPNYLL  523 (758)
T ss_dssp             ECSEEECGGGTCSCSC-EEEEEECT-TSCEEEEETTC------------SSEEEEETTTTEEEEECTTTSCGGGCEEEEE
T ss_pred             ecccccccccccccce-eeeEEEcC-CCCEEEEccCC------------CCcEEEeCCCCceEEecCCCcCCCcccceEE
Confidence            1   1   11122111 12222222 37888866642            2378899999998876321111 11233444


Q ss_pred             EccCCeEEEE
Q 014650          231 AEESGEFWVM  240 (421)
Q Consensus       231 ~~~~~~iyv~  240 (421)
                      ...++.|++-
T Consensus       524 ~d~~g~lWig  533 (758)
T 3ott_A          524 CDEDGLLWVG  533 (758)
T ss_dssp             ECTTSCEEEE
T ss_pred             ECCCCCEEEE
Confidence            5445888864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=92.81  E-value=4.9  Score=35.61  Aligned_cols=89  Identities=10%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||++.-.              ...+++||+.+.+..... ++. +  ....+...++++|+..+             
T Consensus        24 ~~~l~~~d~~--------------~~~i~~~d~~~~~~~~~~-~~~-~--~~~i~~~~dG~l~v~~~-------------   72 (297)
T 3g4e_A           24 SNSLLFVDIP--------------AKKVCRWDSFTKQVQRVT-MDA-P--VSSVALRQSGGYVATIG-------------   72 (297)
T ss_dssp             TTEEEEEETT--------------TTEEEEEETTTCCEEEEE-CSS-C--EEEEEEBTTSSEEEEET-------------
T ss_pred             CCEEEEEECC--------------CCEEEEEECCCCcEEEEe-CCC-c--eEEEEECCCCCEEEEEC-------------
Confidence            4788887642              357999999987654332 121 1  22223322267766532             


Q ss_pred             cceEEEEECCCCceEECCCCCC--CCCCeeEEEEccCCeEEEE
Q 014650          200 ISSVERYDVAKNEWVSMDEMPR--FRAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~~~iyv~  240 (421)
                       ..+.+||+++++++.+.....  +......+.+..+++||+.
T Consensus        73 -~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~  114 (297)
T 3g4e_A           73 -TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG  114 (297)
T ss_dssp             -TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEE
T ss_pred             -CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEe
Confidence             248899999998876543321  1112234445444788874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.72  E-value=5.2  Score=40.97  Aligned_cols=107  Identities=8%  Similarity=-0.016  Sum_probs=53.8

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEE-EeCCEEEEEcccccCCCCCCCCCCCCCCe
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSI-SLGPYIYLLGGSHFDARSFPLDRPLPSDS  146 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (421)
                      ....+++.+.+.+   ..+..||..+.+....-....     ... .+++ .-++..+++|+.              ...
T Consensus        22 sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~-----~~v-~~~~~s~~~~~l~~~~~--------------dg~   78 (814)
T 3mkq_A           22 HPTEPWVLTTLYS---GRVEIWNYETQVEVRSIQVTE-----TPV-RAGKFIARKNWIIVGSD--------------DFR   78 (814)
T ss_dssp             CSSSSEEEEEETT---SEEEEEETTTTEEEEEEECCS-----SCE-EEEEEEGGGTEEEEEET--------------TSE
T ss_pred             CCCCCEEEEEeCC---CEEEEEECCCCceEEEEecCC-----CcE-EEEEEeCCCCEEEEEeC--------------CCe
Confidence            3445666655443   347889987765433211111     011 1222 225556666664              246


Q ss_pred             EEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          147 AFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       147 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      +.+||..+.+....-  ........++.+..++..++.|+.+            ..+.+||..++
T Consensus        79 i~vw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~vw~~~~~  129 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD------------LTVKLWNWENN  129 (814)
T ss_dssp             EEEEETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT------------SEEEEEEGGGT
T ss_pred             EEEEECCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC------------CEEEEEECCCC
Confidence            889998877653321  1111122233332225555566543            24788888776

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.70  E-value=5.9  Score=36.27  Aligned_cols=104  Identities=6%  Similarity=-0.003  Sum_probs=52.0

Q ss_pred             EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc----eeeccccCCCccceEEEEEccC----C---EEEEEc
Q 014650          117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS----WERIAPMISPRGSFACAAVRSL----N---QIIVAG  185 (421)
Q Consensus       117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~----W~~~~~~~~~r~~~~~~~~~~~----~---~iyv~G  185 (421)
                      +.....+++.|+.              -..+.+||..+.+    +..+..+......-.++.+..+    +   .+++.|
T Consensus        22 ~~~~~~~l~s~~~--------------dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           22 VSACNSFTVSCSG--------------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EEECSSEEEEEET--------------TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEecCCeEEEEcC--------------CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            3344466667764              2468888888766    3323222222222222233222    4   677777


Q ss_pred             CCccccccCCCCCccceEEEEECCCCc------eEECCCCCCC--CCCeeEEEEc----cCCeE-EEEeccCCC
Q 014650          186 GGSRHSLFGAAGSRISSVERYDVAKNE------WVSMDEMPRF--RAGCVGFVAE----ESGEF-WVMGGYGDS  246 (421)
Q Consensus       186 G~~~~~~~~~~~~~~~~~~~yd~~t~~------W~~~~~~~~~--r~~~~~~~~~----~~~~i-yv~GG~~~~  246 (421)
                      +.+            ..+.+||..+..      +..+...+..  .....++.+.    .++.. ++.|+.++.
T Consensus        88 ~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  149 (397)
T 1sq9_A           88 SFS------------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT  149 (397)
T ss_dssp             ETT------------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred             cCC------------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc
Confidence            653            237788887776      6665443211  1223333333    22566 777776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.57  E-value=3.1  Score=37.32  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEc-c-CCEEEEEcCCccccccCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR-S-LNQIIVAGGGSRHSLFGAAG  197 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~  197 (421)
                      ++..++.|+.+              ..+.+||..+.+...+..+..-...-..+.+. + ++.+++.|+.+         
T Consensus        24 ~g~~lasgs~D--------------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D---------   80 (316)
T 3bg1_A           24 YGTRLATCSSD--------------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD---------   80 (316)
T ss_dssp             GGCEEEEEETT--------------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT---------
T ss_pred             CCCEEEEEeCC--------------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC---------
Confidence            45666677642              46888888766543333332211112223321 0 15566667654         


Q ss_pred             CccceEEEEECCCCceEECCCCCCCCCCeeEEEEcc--CCeEEEEeccCCC
Q 014650          198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEE--SGEFWVMGGYGDS  246 (421)
Q Consensus       198 ~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~~~iyv~GG~~~~  246 (421)
                         ..+.+||..+..|..+..+........++.+..  .+.+.+.|+.++.
T Consensus        81 ---~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           81 ---RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             ---SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             ---CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence               237888988877754332221111122333322  1456667766553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.52  E-value=6.8  Score=36.57  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=52.8

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      +.++.+|..+++...+-.+...     ...-.++..  ++..++.|+.+              ..+.+||..+.+-..  
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~-----~~~V~sv~fspdg~~lasgs~D--------------g~v~iWd~~~~~~~~--  183 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQP-----GEYISSVAWIKEGNYLAVGTSS--------------AEVQLWDVQQQKRLR--  183 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCST-----TCCEEEEEECTTSSEEEEEETT--------------SCEEEEETTTTEEEE--
T ss_pred             CEEEEEECCCCCEEEEEEecCC-----CCcEEEEEECCCCCEEEEEECC--------------CeEEEEEcCCCcEEE--
Confidence            3588999999887665344321     112222332  56677777742              458889988765322  


Q ss_pred             ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      .+........+...+  +.+.+.|+.+            ..+..+|..+..
T Consensus       184 ~~~~h~~~v~~~s~~--~~~l~sgs~d------------~~i~~~d~~~~~  220 (420)
T 4gga_A          184 NMTSHSARVGSLSWN--SYILSSGSRS------------GHIHHHDVRVAE  220 (420)
T ss_dssp             EECCCSSCEEEEEEE--TTEEEEEETT------------SEEEEEETTSSS
T ss_pred             EEeCCCCceEEEeeC--CCEEEEEeCC------------CceeEeeecccc
Confidence            222222233444556  7777777754            235666666543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.50  E-value=6.2  Score=35.99  Aligned_cols=88  Identities=10%  Similarity=0.051  Sum_probs=42.8

Q ss_pred             CeEEEEeCccCceeecccc-CCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPM-ISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF  222 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~-~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~  222 (421)
                      ..|.+||..+++-...... ..+ ...-.++.+..+++.++.|+.+            ..+.++|..+++-...  +...
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d------------~~i~iwd~~~~~~~~~--~~~h  168 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD------------ICIKVWDLAQQVVLSS--YRAH  168 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT------------SCEEEEETTTTEEEEE--ECCC
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC------------CeEEEEECCCCcEEEE--EcCc
Confidence            4688899887653322211 111 1112233332226777777754            2478899988763321  1111


Q ss_pred             CCCeeEEEEc-cCCeEEEEeccCCC
Q 014650          223 RAGCVGFVAE-ESGEFWVMGGYGDS  246 (421)
Q Consensus       223 r~~~~~~~~~-~~~~iyv~GG~~~~  246 (421)
                      .....++.+. ++..+++.|+.++.
T Consensus       169 ~~~V~~~~~~~~~~~~l~s~s~D~~  193 (344)
T 4gqb_B          169 AAQVTCVAASPHKDSVFLSCSEDNR  193 (344)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCceEEEEecCCCCCceeeeccccc
Confidence            1112233332 22357777776553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.49  E-value=7.5  Score=38.74  Aligned_cols=72  Identities=11%  Similarity=0.179  Sum_probs=43.2

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeC-ccCc--eeeccccCC-----C---ccceEEEE--EccCCE-
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNF-LTFS--WERIAPMIS-----P---RGSFACAA--VRSLNQ-  180 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~-~t~~--W~~~~~~~~-----~---r~~~~~~~--~~~~~~-  180 (421)
                      +.++.++.||+.+..              ...++.+|. .|.+  |+.-.....     .   ....+.++  .+  ++ 
T Consensus        57 tP~v~~g~vyv~~~~--------------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~--g~~  120 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF--------------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD--GKT  120 (599)
T ss_dssp             CCEEETTEEEEECST--------------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC--SSS
T ss_pred             ccEEECCEEEEEeCC--------------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC--Ccc
Confidence            345679999998652              135888888 6654  876443221     1   11123344  45  66 


Q ss_pred             ---EEEEcCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650          181 ---IIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVS  215 (421)
Q Consensus       181 ---iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~  215 (421)
                         ||+....             ..+..+|.++.+  |+.
T Consensus       121 ~~rV~v~t~d-------------g~l~AlDa~TG~~~W~~  147 (599)
T 1w6s_A          121 PALILKTQLD-------------GNVAALNAETGETVWKV  147 (599)
T ss_dssp             CCEEEEECTT-------------SEEEEEETTTCCEEEEE
T ss_pred             eeEEEEEcCC-------------CEEEEEECCCCCEEEee
Confidence               8876431             248889998876  875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.45  E-value=5.1  Score=34.95  Aligned_cols=97  Identities=13%  Similarity=-0.007  Sum_probs=50.0

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC---CCccc-eEEEEEccCCEEEEEcCCccccccCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI---SPRGS-FACAAVRSLNQIIVAGGGSRHSLFGA  195 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~---~~r~~-~~~~~~~~~~~iyv~GG~~~~~~~~~  195 (421)
                      ++.||+....              ...+.+||+.......+....   ..... ..+++...++.+||.+...       
T Consensus        40 ~g~l~v~~~~--------------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-------   98 (286)
T 1q7f_A           40 QNDIIVADTN--------------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------   98 (286)
T ss_dssp             TCCEEEEEGG--------------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------
T ss_pred             CCCEEEEECC--------------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-------
Confidence            5678887653              246889998755444433211   11112 3344422228999987421       


Q ss_pred             CCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEecc
Q 014650          196 AGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       196 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                          ...+.+||.....-..+.....  ....++++..++++|+....
T Consensus        99 ----~~~i~~~d~~g~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~  140 (286)
T 1q7f_A           99 ----THQIQIYNQYGQFVRKFGATIL--QHPRGVTVDNKGRIIVVECK  140 (286)
T ss_dssp             ----GCEEEEECTTSCEEEEECTTTC--SCEEEEEECTTSCEEEEETT
T ss_pred             ----CCEEEEECCCCcEEEEecCccC--CCceEEEEeCCCCEEEEECC
Confidence                2347888855443333322111  12234455444789987643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.24  E-value=4.7  Score=41.08  Aligned_cols=41  Identities=10%  Similarity=0.143  Sum_probs=24.9

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEe
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTV  363 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG  363 (421)
                      ..|+++|+....-+.+......  .....++++.++.||+.-.
T Consensus       562 ~~I~~~d~dG~~~~~~~~~~~~--~~~P~glavd~~~lywtd~  602 (699)
T 1n7d_A          562 HSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDI  602 (699)
T ss_dssp             TEEEEECSSSSCCEEECCCSSS--CSSCCCCEEETTEEEEECS
T ss_pred             CeEEEEccCCCceEEEEecCCc--CCCceEeEEECCEEEEEeC
Confidence            5688888865444444322211  1244577778899999873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=92.15  E-value=5.9  Score=34.96  Aligned_cols=112  Identities=8%  Similarity=0.017  Sum_probs=56.5

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-C-CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec-
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-G-PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI-  160 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~-  160 (421)
                      ..++.||+.++++..+.. +... .....-.+++.. + +.||+....               ..+++||+. .+...+ 
T Consensus        46 ~~i~~~d~~~g~~~~~~~-~~~~-~~~~~~~~i~~~~~~g~l~v~~~~---------------~~l~~~d~~-g~~~~~~  107 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICK-PEVN-GYGGIPAGCQCDRDANQLFVADMR---------------LGLLVVQTD-GTFEEIA  107 (314)
T ss_dssp             CEEEEECTTTCCEEEEEC-CEET-TEECCEEEEEECSSSSEEEEEETT---------------TEEEEEETT-SCEEECC
T ss_pred             CEEEEEeCCCCcEEEEEe-cccC-CCCCCCceEEEecCCCcEEEEECC---------------CCEEEEeCC-CCEEEEE
Confidence            458899998888876532 1000 000112334433 4 788887642               258999988 766655 


Q ss_pred             cccCCC---ccceEEEEEccCCEEEEEcCCccc---cccCCCCCccceEEEEECCCCceEE
Q 014650          161 APMISP---RGSFACAAVRSLNQIIVAGGGSRH---SLFGAAGSRISSVERYDVAKNEWVS  215 (421)
Q Consensus       161 ~~~~~~---r~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~~~~~~yd~~t~~W~~  215 (421)
                      ......   ..-..++... ++++|+.......   ............+++||+. .+...
T Consensus       108 ~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A          108 KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence            322111   1122333333 2789887653200   0000011123568888887 55544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.13  E-value=7.8  Score=36.33  Aligned_cols=114  Identities=11%  Similarity=0.011  Sum_probs=60.3

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CC-EEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GP-YIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      .+.++..+.+.....++.+|..+.+...+...+.       ...+++.. ++ +|++.+..+            ....++
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~-------~~~~~~~spdg~~la~~~~~~------------g~~~i~  250 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-------HNGAPAFSPDGSKLAFALSKT------------GSLNLY  250 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-------CEEEEEECTTSSEEEEEECTT------------SSCEEE
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC-------cccCEEEcCCCCEEEEEEecC------------CCceEE
Confidence            3444443333233468899999888776644331       11222222 44 455454421            135799


Q ss_pred             EEeCccCceeeccccCCCccceEEEEEccCCE-EEEEcCCccccccCCCCCccceEEEEECCCCceEEC
Q 014650          149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQ-IIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM  216 (421)
Q Consensus       149 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~  216 (421)
                      .+|..+.+..++.....   ......+..+++ |++.+..+          ....++.+|..++.-..+
T Consensus       251 ~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~----------g~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          251 VMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQA----------GRPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             EEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECTT----------SSCEEEEEETTSSCCEEC
T ss_pred             EEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECCC----------CCcEEEEEECCCCCEEEE
Confidence            99999887766654322   222333322254 44443321          134688889988775554

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=91.97  E-value=6.3  Score=37.74  Aligned_cols=48  Identities=8%  Similarity=0.045  Sum_probs=30.8

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec--cccCCCccceEEEEEccCCEEEEEcCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI--APMISPRGSFACAAVRSLNQIIVAGGGS  188 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~~iyv~GG~~  188 (421)
                      ++.+|+|.|.                ..|+||..+++....  +.++  . --++....  +++|++-|..
T Consensus       158 ~~~~yfFkG~----------------~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~--g~~YfFkG~~  207 (460)
T 1qhu_A          158 DEGILFFQGN----------------RKWFWDLTTGTKKERSWPAVG--N-CTSALRWL--GRYYCFQGNQ  207 (460)
T ss_dssp             SSEEEEEETT----------------EEEEEETTTTEEEEECCTTSC--C-CSEEEEET--TEEEEEETTE
T ss_pred             CCeEEEEecc----------------cEEEEecccceeecccCCCCC--c-cchheeeC--CceEEEECCE
Confidence            6789999883                589999887654321  2222  2 23444445  8999998853

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.94  E-value=6.2  Score=34.77  Aligned_cols=91  Identities=12%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             CccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eee
Q 014650           84 SSPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WER  159 (421)
Q Consensus        84 ~~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~  159 (421)
                      ..+..+|+.+.+  |+.-..-.      ...+...+.-++.|++.+.                +.++.||+ +.+  |+-
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~------~~~~~~~~~pdG~ilvs~~----------------~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKG------WECNSVAATKAGEILFSYS----------------KGAKMITR-DGRELWNI   71 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTT------CCCCEEEECTTSCEEEECB----------------SEEEEECT-TSCEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCCCcc------CCCcCeEECCCCCEEEeCC----------------CCEEEECC-CCCEEEEE
Confidence            457889987665  54322110      0223333344777887321                35888998 443  654


Q ss_pred             ccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          160 IAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       160 ~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      -.+  .....+++..+.+ +++++.....           ...+..+|++-+
T Consensus        72 ~~~--~~~~~~~~~~~~d-G~~lv~~~~~-----------~~~v~~vd~~Gk  109 (276)
T 3no2_A           72 AAP--AGCEMQTARILPD-GNALVAWCGH-----------PSTILEVNMKGE  109 (276)
T ss_dssp             ECC--TTCEEEEEEECTT-SCEEEEEEST-----------TEEEEEECTTSC
T ss_pred             cCC--CCccccccEECCC-CCEEEEecCC-----------CCEEEEEeCCCC
Confidence            331  1112234444443 7776664421           124667777443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=91.92  E-value=7.3  Score=35.58  Aligned_cols=36  Identities=11%  Similarity=-0.012  Sum_probs=22.6

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCC
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLP  103 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~  103 (421)
                      ....+.+++........+++.+|..+.+-..+...+
T Consensus        44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~   79 (388)
T 3pe7_A           44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR   79 (388)
T ss_dssp             CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS
T ss_pred             CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC
Confidence            344555555444233446889999998888876544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=91.89  E-value=3.3  Score=38.81  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=48.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      +.|++||..+.+-.++-.+......-.++.+..++..++.|+.+            ..+.+||.++++-...-.....  
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------------g~v~iWd~~~~~~~~~~~~h~~--  190 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------------AEVQLWDVQQQKRLRNMTSHSA--  190 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------------SCEEEEETTTTEEEEEECCCSS--
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------------CeEEEEEcCCCcEEEEEeCCCC--
Confidence            46899999888766554443333233444443337777888764            2488899988764332221222  


Q ss_pred             CeeEEEEccCCeEEEEeccCCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ...++.. + +.+.+.|+.++.
T Consensus       191 ~v~~~s~-~-~~~l~sgs~d~~  210 (420)
T 4gga_A          191 RVGSLSW-N-SYILSSGSRSGH  210 (420)
T ss_dssp             CEEEEEE-E-TTEEEEEETTSE
T ss_pred             ceEEEee-C-CCEEEEEeCCCc
Confidence            2233333 3 667777776543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.86  E-value=7.5  Score=35.56  Aligned_cols=28  Identities=4%  Similarity=0.093  Sum_probs=18.5

Q ss_pred             EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc------eeecccc
Q 014650          122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS------WERIAPM  163 (421)
Q Consensus       122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~------W~~~~~~  163 (421)
                      .+++.|+.+              ..+.+||..+.+      +..+...
T Consensus        82 ~~l~s~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~~~  115 (397)
T 1sq9_A           82 CLVATTSFS--------------GDLLFYRITREDETKKVIFEKLDLL  115 (397)
T ss_dssp             EEEEEEETT--------------SCEEEEEEEECTTTCCEEEEEECCS
T ss_pred             cEEEEEcCC--------------CCEEEEEccCCcccccccceeeccc
Confidence            677777642              458888887776      6665544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=91.84  E-value=13  Score=40.19  Aligned_cols=124  Identities=6%  Similarity=-0.023  Sum_probs=60.7

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      .+..||..+.+-...  +...     ......+..  ++..++.|+.              -..+.+||..+.+-...  
T Consensus       638 ~i~vw~~~~~~~~~~--~~~h-----~~~v~~~~~s~~~~~l~s~~~--------------d~~v~vwd~~~~~~~~~--  694 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLD--IKAH-----EDEVLCCAFSSDDSYIATCSA--------------DKKVKIWDSATGKLVHT--  694 (1249)
T ss_dssp             CEEEEETTTCCEEEE--ECCC-----SSCEEEEEECTTSSEEEEEET--------------TSEEEEEETTTCCEEEE--
T ss_pred             eEEEEECCCCCEEEE--eccC-----CCCEEEEEEecCCCEEEEEeC--------------CCeEEEEECCCCceEEE--
Confidence            477889887664322  2211     111222222  5566666663              24689999887654322  


Q ss_pred             cCCCccceEEEEEcc--CCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEE
Q 014650          163 MISPRGSFACAAVRS--LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVM  240 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~  240 (421)
                      +........++.+..  ++.+++.|+.+            ..+.+||..+..-...-.  .......++.+..++...+.
T Consensus       695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d------------~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s  760 (1249)
T 3sfz_A          695 YDEHSEQVNCCHFTNKSNHLLLATGSND------------FFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDELLAS  760 (1249)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEEETT------------SCEEEEETTSSSEEEEEC--CCSSCEEEEEECSSTTEEEE
T ss_pred             EcCCCCcEEEEEEecCCCceEEEEEeCC------------CeEEEEECCCcchhheec--CCCCCEEEEEEecCCCEEEE
Confidence            211222223333321  14456666643            247889988876433211  11112233333333667777


Q ss_pred             eccCC
Q 014650          241 GGYGD  245 (421)
Q Consensus       241 GG~~~  245 (421)
                      |+.++
T Consensus       761 ~s~dg  765 (1249)
T 3sfz_A          761 CSADG  765 (1249)
T ss_dssp             EESSS
T ss_pred             EECCC
Confidence            76654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.65  E-value=8.9  Score=36.00  Aligned_cols=64  Identities=8%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccC-CEEEEEcCCccccccCCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL-NQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~  198 (421)
                      ++.+++.|+.              ...+.+||..++.-..+.   .-...-.++.+..+ ..+++.|+.+          
T Consensus       220 ~~~~l~~g~~--------------dg~i~~wd~~~~~~~~~~---~h~~~v~~v~~~p~~~~~~~s~s~d----------  272 (435)
T 4e54_B          220 SSRMVVTGDN--------------VGNVILLNMDGKELWNLR---MHKKKVTHVALNPCCDWFLATASVD----------  272 (435)
T ss_dssp             TTTEEEEECS--------------SSBEEEEESSSCBCCCSB---CCSSCEEEEEECTTCSSEEEEEETT----------
T ss_pred             CCCEEEEEeC--------------CCcEeeeccCcceeEEEe---cccceEEeeeecCCCceEEEEecCc----------
Confidence            5667777764              245888887654322221   11112223333211 3466667653          


Q ss_pred             ccceEEEEECCCCc
Q 014650          199 RISSVERYDVAKNE  212 (421)
Q Consensus       199 ~~~~~~~yd~~t~~  212 (421)
                        ..+.+||..+.+
T Consensus       273 --~~v~iwd~~~~~  284 (435)
T 4e54_B          273 --QTVKIWDLRQVR  284 (435)
T ss_dssp             --SBCCEEETTTCC
T ss_pred             --ceeeEEeccccc
Confidence              236678877654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.64  E-value=4.2  Score=37.24  Aligned_cols=87  Identities=13%  Similarity=0.081  Sum_probs=36.8

Q ss_pred             eEEEEeCccCceeeccccCC-C-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMIS-P-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~-~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      .|.+||..+.+-........ . ...-.++.+..+++.++.|+.+            ..+.+||..+.+-...-...  .
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d------------g~v~iwd~~~~~~~~~~~~h--~  181 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD------------FSVKVWDLSQKAVLKSYNAH--S  181 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT------------SCEEEEETTTTEEEEEECCC--S
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC------------CeEEEEECCCCcEEEEEcCC--C
Confidence            58888887765332222111 1 1112233333226777777754            23788999887643321111  1


Q ss_pred             CCeeEEEE-ccCCeEEEEeccCCC
Q 014650          224 AGCVGFVA-EESGEFWVMGGYGDS  246 (421)
Q Consensus       224 ~~~~~~~~-~~~~~iyv~GG~~~~  246 (421)
                      ....++.+ .+++.+++.+|.++.
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~  205 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGR  205 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSC
T ss_pred             CCEEEEEEccCCCceeeeeccCCc
Confidence            12223333 222356777776543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.61  E-value=7.3  Score=34.94  Aligned_cols=85  Identities=6%  Similarity=0.038  Sum_probs=38.5

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPRFRA  224 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~  224 (421)
                      .+.+||..+.+......+..-.....++.+..++.+.+.|+.+            ..+.++|..+.+-.. +..-+..  
T Consensus        59 ~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D------------~~i~lWd~~~~~~~~~~~~~~~~--  124 (321)
T 3ow8_A           59 LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD------------AHIRLWDLENGKQIKSIDAGPVD--  124 (321)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT------------SEEEEEETTTTEEEEEEECCTTC--
T ss_pred             CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC------------CcEEEEECCCCCEEEEEeCCCcc--
Confidence            4556665554433222222222222233333225566666654            247888988876432 2111111  


Q ss_pred             CeeEEEEccCCeEEEEeccCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~  245 (421)
                       ..++.+..+++..+.|+.++
T Consensus       125 -~~~~~~spdg~~l~~g~~dg  144 (321)
T 3ow8_A          125 -AWTLAFSPDSQYLATGTHVG  144 (321)
T ss_dssp             -CCCEEECTTSSEEEEECTTS
T ss_pred             -EEEEEECCCCCEEEEEcCCC
Confidence             11223322366777776554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=91.44  E-value=6.5  Score=34.06  Aligned_cols=99  Identities=11%  Similarity=-0.027  Sum_probs=52.9

Q ss_pred             eEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCC-ccceEEEEEccCCEEEEEcCCccc
Q 014650          114 FTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISP-RGSFACAAVRSLNQIIVAGGGSRH  190 (421)
Q Consensus       114 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~  190 (421)
                      ++++..  ++.||+....              ...+++||+.+..-..+.+  .. ..-+++++...++.||+....   
T Consensus        39 ~gi~~d~~~~~ly~~d~~--------------~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~---   99 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDIS--------------EPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQ---   99 (267)
T ss_dssp             EEEEEETTTTEEEEEETT--------------TTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETT---
T ss_pred             EEEEEecCCCEEEEEECC--------------CCEEEEEecCCCCcEEEEE--CCCCCccEEEEEecCCeEEEEECC---
Confidence            344443  5789987642              3579999987764333221  11 112344443112799998653   


Q ss_pred             cccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEcc-CCeEEEEec
Q 014650          191 SLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEE-SGEFWVMGG  242 (421)
Q Consensus       191 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~~~iyv~GG  242 (421)
                               ...+.++++....-+.+....  .....++++.. ++.||+...
T Consensus       100 ---------~~~I~~~~~~g~~~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A          100 ---------LDRIEVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             ---------TTEEEEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEEC
T ss_pred             ---------CCEEEEEEcCCCCEEEEEECC--CCCccEEEEeeCCCEEEEEEC
Confidence                     245888888754433321111  11223444442 389999864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.32  E-value=7.2  Score=34.32  Aligned_cols=77  Identities=13%  Similarity=0.049  Sum_probs=39.5

Q ss_pred             CeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCC
Q 014650          145 DSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMP  220 (421)
Q Consensus       145 ~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~  220 (421)
                      ..+.++|+.|.+  |+.-..  .....+.+.+..+ +++++.+.              ..+..||+ +++  |+.-.+  
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pd-G~ilvs~~--------------~~V~~~d~-~G~~~W~~~~~--   74 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLE--KGWECNSVAATKA-GEILFSYS--------------KGAKMITR-DGRELWNIAAP--   74 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECC--TTCCCCEEEECTT-SCEEEECB--------------SEEEEECT-TSCEEEEEECC--
T ss_pred             CEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCC-CCEEEeCC--------------CCEEEECC-CCCEEEEEcCC--
Confidence            568888887765  664332  1112344444433 88888321              23888998 443  764432  


Q ss_pred             CCCCCeeEEEEccCCeEEEEec
Q 014650          221 RFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       221 ~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      .....+.+....+ +++++...
T Consensus        75 ~~~~~~~~~~~~d-G~~lv~~~   95 (276)
T 3no2_A           75 AGCEMQTARILPD-GNALVAWC   95 (276)
T ss_dssp             TTCEEEEEEECTT-SCEEEEEE
T ss_pred             CCccccccEECCC-CCEEEEec
Confidence            1111123333444 66666543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.13  E-value=8.3  Score=34.66  Aligned_cols=115  Identities=11%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc----Ccee
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT----FSWE  158 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t----~~W~  158 (421)
                      .+..+|..+.+...+.+..       ..-++++..  ++.||+....              ...++++|+.+    ..-.
T Consensus        11 ~I~~i~~~~~~~~~~~~~~-------~~p~g~~~d~~~~~ly~~D~~--------------~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNL-------RNVVALDTEVASNRIYWSDLS--------------QRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SEEEEETTSCCCEEEECSC-------SSEEEEEEETTTTEEEEEETT--------------TTEEEEEEC--------CE
T ss_pred             eEEEEECCCcceEehhcCC-------CceEEEEEEeCCCEEEEEECC--------------CCcEEEEECCCCCCCcccE
Confidence            4778888877665542211       223455544  5789988652              35789999876    2222


Q ss_pred             ec-c-ccCCCccceEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC--CCCCCCCCCeeEEEEc
Q 014650          159 RI-A-PMISPRGSFACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM--DEMPRFRAGCVGFVAE  232 (421)
Q Consensus       159 ~~-~-~~~~~r~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~  232 (421)
                      .+ + .+..|   .++++.  +  +.||+.-..            ...++++|+....-+.+  ..+..|    .++++.
T Consensus        70 ~~~~~~~~~p---~glavd~~~--~~ly~~d~~------------~~~I~~~~~~g~~~~~~~~~~~~~P----~~iavd  128 (316)
T 1ijq_A           70 TVISRDIQAP---DGLAVDWIH--SNIYWTDSV------------LGTVSVADTKGVKRKTLFRENGSKP----RAIVVD  128 (316)
T ss_dssp             EEECSSCSCC---CEEEEETTT--TEEEEEETT------------TTEEEEEETTSSSEEEEEECTTCCE----EEEEEE
T ss_pred             EEEeCCCCCc---CEEEEeecC--CeEEEEECC------------CCEEEEEeCCCCceEEEEECCCCCc----ceEEeC
Confidence            22 1 12222   344443  4  899998543            23578888876543332  123333    344554


Q ss_pred             -cCCeEEEEe
Q 014650          233 -ESGEFWVMG  241 (421)
Q Consensus       233 -~~~~iyv~G  241 (421)
                       .++.||+..
T Consensus       129 p~~g~ly~~d  138 (316)
T 1ijq_A          129 PVHGFMYWTD  138 (316)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEc
Confidence             238899875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=90.81  E-value=9.4  Score=34.74  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             eEEEEECCCCceEECCCCCCCCCCeeEEEE--ccCCeEEEEeccCCC
Q 014650          202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVA--EESGEFWVMGGYGDS  246 (421)
Q Consensus       202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~~~iyv~GG~~~~  246 (421)
                      .+.+||.++.+-...-.-..  ....++.+  ..++.+++.|+.++.
T Consensus       177 ~v~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFHGHG--ADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             EEEEEETTTCCEEEEEECCS--SCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cEEEEeCCCCeEEEEEcCCC--CCeEEEEEEeCCCCCEEEEEeCCCe
Confidence            47888988876432111111  11112222  212567777776654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.69  E-value=11  Score=35.19  Aligned_cols=97  Identities=10%  Similarity=0.119  Sum_probs=47.8

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+++.|+.+              ..+.+||..+.+-  +..+..-...-.++.+..++..++.|+.+           
T Consensus       161 ~~~~l~sgs~D--------------~~i~iwd~~~~~~--~~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----------  213 (410)
T 1vyh_C          161 SGKLLASCSAD--------------MTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRD-----------  213 (410)
T ss_dssp             TSSEEEEEETT--------------SCCCEEETTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETT-----------
T ss_pred             CCCEEEEEeCC--------------CeEEEEeCCCCce--eEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----------
Confidence            56677777753              3466778765432  22222212222333332225666777754           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                       ..+.+||..+..-...  +........++....++.+++.|+.++.
T Consensus       214 -~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          214 -KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQT  257 (410)
T ss_dssp             -SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             -CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence             3478889887753321  1111111223333333677777776553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=90.67  E-value=2  Score=38.61  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      +++|+.++.+            ..+.++|..+++....-+.+........+...+++.+|+.+.
T Consensus        11 ~~~~v~~~~~------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~   62 (349)
T 1jmx_B           11 HEYMIVTNYP------------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN   62 (349)
T ss_dssp             CEEEEEEETT------------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred             CEEEEEeCCC------------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC
Confidence            6788877642            458899998887543222222001122223333245777764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.61  E-value=8  Score=34.86  Aligned_cols=53  Identities=9%  Similarity=0.068  Sum_probs=27.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN  211 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~  211 (421)
                      ..+.+||..+.+-...  ++.......++.+..++..++.||.+            ..+.+||..+.
T Consensus        77 g~v~iWd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d------------~~v~iw~~~~~  129 (340)
T 1got_B           77 GKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSGNYVACGGLD------------NICSIYNLKTR  129 (340)
T ss_dssp             TEEEEEETTTCCEEEE--EECSSSCEEEEEECTTSSEEEEEETT------------CEEEEEETTTC
T ss_pred             CcEEEEECCCCCcceE--eecCCccEEEEEECCCCCEEEEEeCC------------CeEEEEECccC
Confidence            3578888776553222  22121222233333226677777753            24778887765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=90.59  E-value=7.3  Score=35.49  Aligned_cols=98  Identities=8%  Similarity=0.024  Sum_probs=48.2

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccC-CEEEEEcCCccccccCCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL-NQIIVAGGGSRHSLFGAAGS  198 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~  198 (421)
                      ++..++.|+.+              ..+.+||..+.+-.  ..+..-...-.++.+..+ ..+++.|+.+          
T Consensus       138 dg~~l~sgs~d--------------~~i~iwd~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~l~s~s~D----------  191 (344)
T 4gqb_B          138 SGTQAVSGSKD--------------ICIKVWDLAQQVVL--SSYRAHAAQVTCVAASPHKDSVFLSCSED----------  191 (344)
T ss_dssp             TSSEEEEEETT--------------SCEEEEETTTTEEE--EEECCCSSCEEEEEECSSCTTEEEEEETT----------
T ss_pred             CCCEEEEEeCC--------------CeEEEEECCCCcEE--EEEcCcCCceEEEEecCCCCCceeeeccc----------
Confidence            56666777642              35888998876532  222211111222222211 3577777754          


Q ss_pred             ccceEEEEECCCCceEECCCCCCCCCCeeEEEEc-cCCeEEEEeccCC
Q 014650          199 RISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE-ESGEFWVMGGYGD  245 (421)
Q Consensus       199 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~~iyv~GG~~~  245 (421)
                        ..+.+||..+.+-...-..........++.+. +++++++.|+.++
T Consensus       192 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          192 --NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             --SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             --cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence              23788999887643321111111112233332 2266778887655

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=90.57  E-value=8.7  Score=33.97  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=41.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccc-eEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGS-FACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ..+.+||..+..-..  .+...... .++....+ ++.++.|+.+            ..+.+||..+++-...  +....
T Consensus        35 g~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~s~s~d------------~~i~vwd~~~~~~~~~--~~~h~   97 (304)
T 2ynn_A           35 GRVELWNYETQVEVR--SIQVTETPVRAGKFIAR-KNWIIVGSDD------------FRIRVFNYNTGEKVVD--FEAHP   97 (304)
T ss_dssp             SEEEEEETTTTEEEE--EEECCSSCEEEEEEEGG-GTEEEEEETT------------SEEEEEETTTCCEEEE--EECCS
T ss_pred             CcEEEEECCCCceeE--EeeccCCcEEEEEEeCC-CCEEEEECCC------------CEEEEEECCCCcEEEE--EeCCC
Confidence            468888887765322  11111111 12222322 6666777753            3478899888753221  11111


Q ss_pred             CCeeEEEEccCCeEEEEeccCCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ....++.+..++.+.+.|+.++.
T Consensus        98 ~~v~~~~~~~~~~~l~sgs~D~~  120 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGSDDLT  120 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSC
T ss_pred             CcEEEEEEcCCCCEEEEECCCCe
Confidence            12233444333667777776654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=90.57  E-value=5.5  Score=36.44  Aligned_cols=88  Identities=8%  Similarity=0.053  Sum_probs=42.6

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+-...-....+...........++.++++|+.+            ..+.+||..+.+-...  +.....
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~d~~~~~~~~~--~~~~~~  187 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------------PKVQLCDLKSGSCSHI--LQGHRQ  187 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS------------SSEEEEESSSSCCCEE--ECCCCS
T ss_pred             CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC------------CeEEEEeCCCcceeee--ecCCCC
Confidence            46889998887654443333222222222221114466676653            2488889887653211  111111


Q ss_pred             CeeEEEEccCCe-EEEEeccCCC
Q 014650          225 GCVGFVAEESGE-FWVMGGYGDS  246 (421)
Q Consensus       225 ~~~~~~~~~~~~-iyv~GG~~~~  246 (421)
                      ...++.+..++. +++.|+.++.
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~  210 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSR  210 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSC
T ss_pred             cEEEEEECCCCCcEEEEEcCCCc
Confidence            223333332233 6777776553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=90.40  E-value=15  Score=36.49  Aligned_cols=60  Identities=7%  Similarity=-0.197  Sum_probs=34.1

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEE-EEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEe
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGF-IVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI  399 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i  399 (421)
                      ..++.+|..+.+.+.+..- .    .....+ ..-++.+++..+....               ...++.+|..+++.+.+
T Consensus       316 ~~l~~~d~~~~~~~~l~~~-~----~~~~~~~s~~~~~~~~~~~~~~~---------------~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          316 AVLGILDPESGELVDAAGP-W----TEWAATLTVSGTRAVGVAASPRT---------------AYEVVELDTVTGRARTI  375 (662)
T ss_dssp             CEEEEEETTTTEEEECCSS-C----CEEEEEEEEETTEEEEEEEETTE---------------EEEEEEEETTTCCEEEE
T ss_pred             cEEEEEECCCCcEEEecCC-C----CeEEEEEecCCCEEEEEEcCCCC---------------CCEEEEEECCCCceEEe
Confidence            4577778887776665321 1    111223 3345666666543321               14688888888877776


Q ss_pred             c
Q 014650          400 F  400 (421)
Q Consensus       400 ~  400 (421)
                      .
T Consensus       376 ~  376 (662)
T 3azo_A          376 G  376 (662)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=90.26  E-value=9.2  Score=33.76  Aligned_cols=141  Identities=9%  Similarity=0.002  Sum_probs=68.1

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      ...+|+...  ....++.||+.+++...+. ++.      +. .+++.. ++.+|+..+                ..+++
T Consensus        24 ~~~l~~~d~--~~~~i~~~d~~~~~~~~~~-~~~------~~-~~i~~~~dG~l~v~~~----------------~~l~~   77 (297)
T 3g4e_A           24 SNSLLFVDI--PAKKVCRWDSFTKQVQRVT-MDA------PV-SSVALRQSGGYVATIG----------------TKFCA   77 (297)
T ss_dssp             TTEEEEEET--TTTEEEEEETTTCCEEEEE-CSS------CE-EEEEEBTTSSEEEEET----------------TEEEE
T ss_pred             CCEEEEEEC--CCCEEEEEECCCCcEEEEe-CCC------ce-EEEEECCCCCEEEEEC----------------CeEEE
Confidence            344555433  2345889999887664432 221      11 233333 566665432                35899


Q ss_pred             EeCccCceeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC-CCCCCCCCCe
Q 014650          150 FNFLTFSWERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM-DEMPRFRAGC  226 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~  226 (421)
                      ||+.+.+++.+.....  +........++.++++|+..-..... ..........++++|+.. +...+ ..+..+    
T Consensus        78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p----  151 (297)
T 3g4e_A           78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-PAVLERHQGALYSLFPDH-HVKKYFDQVDIS----  151 (297)
T ss_dssp             EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB-TTBCCTTCEEEEEECTTS-CEEEEEEEESBE----
T ss_pred             EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc-cccccCCCcEEEEEECCC-CEEEEeeccccc----
Confidence            9999988877654432  22222333333337887743111000 000012245688888753 33222 111111    


Q ss_pred             eEEEEc-cCCeEEEEecc
Q 014650          227 VGFVAE-ESGEFWVMGGY  243 (421)
Q Consensus       227 ~~~~~~-~~~~iyv~GG~  243 (421)
                      .++++. +++.+|+....
T Consensus       152 ngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A          152 NGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             EEEEECTTSCEEEEEEGG
T ss_pred             cceEEcCCCCEEEEecCC
Confidence            233443 32468887643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.19  E-value=11  Score=34.58  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=27.1

Q ss_pred             CeEEEEeCccC--ceeeccccCCCccceEEEEEccC-CEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          145 DSAFRFNFLTF--SWERIAPMISPRGSFACAAVRSL-NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       145 ~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      ..+.+||..+.  ....+..+......-.++.+..+ +.+++.|+.+            ..+.+||..+..
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------g~v~iwd~~~~~  147 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN------------GEIFIWDMNKCT  147 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS------------SCEEBCBTTTTS
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC------------CeEEEEECCCCc
Confidence            35788887761  12222222211112222233221 5566777753            237778887764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=90.12  E-value=15  Score=35.95  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=43.6

Q ss_pred             CCeEEEEeCccCceeeccccCCCccceEEEEEccCCE-EEEEcCCccccccCCCCCccceEEEEECCCCceEE---CCCC
Q 014650          144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQ-IIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS---MDEM  219 (421)
Q Consensus       144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~---~~~~  219 (421)
                      ...++.+|..+.+-..+..++..+.-+.++.--+ ++ +|+.+..            .+.+.++|.++++-..   +...
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spd-g~~l~va~~~------------~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSS-HRYFMTAANN------------SNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTT-SCEEEEEEGG------------GTEEEEEETTTTEEEEEEECSSS
T ss_pred             CCeEEEEEecCCCcceeEEeccCcCccCceECCC-CCEEEEEecC------------CCeEEEEECCCCeEEEeeccCCC
Confidence            3578999987754322222333333333333322 44 5555432            3458889999987543   2334


Q ss_pred             CCCCCCeeEEEEccCCeEEEEecc
Q 014650          220 PRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       220 ~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                      |.+... ..+..-+.+.+|+.+..
T Consensus       368 ph~g~g-~~~~~p~~g~~~~s~~~  390 (543)
T 1nir_A          368 PHPGRG-ANFVHPKYGPVWSTSHL  390 (543)
T ss_dssp             BCCTTC-EEEEETTTEEEEEEEBS
T ss_pred             CCCCCC-cccCCCCCccEEEeccC
Confidence            444322 22222222678887653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=90.04  E-value=6.7  Score=35.09  Aligned_cols=55  Identities=5%  Similarity=0.170  Sum_probs=30.4

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccC---CEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL---NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      ..+.+||..+.+........... ...++.+..+   +.+++.|+.+            ..+.+||..+..
T Consensus        44 ~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~  101 (357)
T 3i2n_A           44 GVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFG------------GNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETT------------SCEEEECTTSCS
T ss_pred             cEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCC------------CeEEEEeCCCCC
Confidence            46889998887765443322211 2233333321   2666666653            237788887764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=90.02  E-value=10  Score=33.93  Aligned_cols=85  Identities=9%  Similarity=0.046  Sum_probs=41.6

Q ss_pred             CeEEEEeCccCceee-ccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650          145 DSAFRFNFLTFSWER-IAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r  223 (421)
                      ..+.+||..+.+-.. +..-+..  ..+++ +..+++.++.|+.+            ..+.+||..+.+-...  +....
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~--~~~~~-~spdg~~l~~g~~d------------g~v~i~~~~~~~~~~~--~~~~~  164 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVD--AWTLA-FSPDSQYLATGTHV------------GKVNIFGVESGKKEYS--LDTRG  164 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTC--CCCEE-ECTTSSEEEEECTT------------SEEEEEETTTCSEEEE--EECSS
T ss_pred             CcEEEEECCCCCEEEEEeCCCcc--EEEEE-ECCCCCEEEEEcCC------------CcEEEEEcCCCceeEE--ecCCC
Confidence            468888987765322 1111111  11222 22226777777753            2477888877653221  11111


Q ss_pred             CCeeEEEEccCCeEEEEeccCCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ....++.+..++++.+.|+.++.
T Consensus       165 ~~v~~~~~spdg~~lasg~~dg~  187 (321)
T 3ow8_A          165 KFILSIAYSPDGKYLASGAIDGI  187 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceEEEEEECCCCCEEEEEcCCCe
Confidence            11233344333677777776553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.01  E-value=9.8  Score=41.25  Aligned_cols=125  Identities=10%  Similarity=-0.060  Sum_probs=60.9

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI  164 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~  164 (421)
                      .+..||..+++...+.....       .-.+++...+..++.|+.              -..+.+||..+.+-...-...
T Consensus      1026 ~i~vwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~l~~~~~--------------dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A         1026 VIQVWNWQTGDYVFLQAHQE-------TVKDFRLLQDSRLLSWSF--------------DGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp             BEEEEETTTTEEECCBCCSS-------CEEEEEECSSSEEEEEES--------------SSEEEEEETTTTCCCEEEECC
T ss_pred             EEEEEECCCCceEEEecCCC-------cEEEEEEcCCCcEEEEEC--------------CCcEEEEECCCCceeEEEccc
Confidence            47788888877664432221       122233333334455553              246888998776533211111


Q ss_pred             CCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccC
Q 014650          165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYG  244 (421)
Q Consensus       165 ~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~  244 (421)
                      .... .+++... ++..++.|+.+            ..+.+||..+.+-  +..+........++.+..++++.+.|+.+
T Consensus      1085 ~~~v-~~~~~s~-d~~~l~s~s~d------------~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A         1085 QGTV-LSCAISS-DATKFSSTSAD------------KTAKIWSFDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp             SSCC-CCEEECS-SSSSCEEECCS------------SCCCEECSSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCcE-EEEEECC-CCCEEEEEcCC------------CcEEEEECCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence            1111 1122222 26667777754            2366788776542  22222222222344443337788888766


Q ss_pred             CC
Q 014650          245 DS  246 (421)
Q Consensus       245 ~~  246 (421)
                      +.
T Consensus      1149 g~ 1150 (1249)
T 3sfz_A         1149 GE 1150 (1249)
T ss_dssp             SC
T ss_pred             CE
Confidence            54

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.01  E-value=12  Score=34.78  Aligned_cols=96  Identities=9%  Similarity=0.108  Sum_probs=48.7

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+++.|+.+              ..+.+||..+.+-...  +......-.++.+..++.+++.|+.++          
T Consensus       119 ~~~~l~s~s~D--------------g~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D~----------  172 (410)
T 1vyh_C          119 VFSVMVSASED--------------ATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSADM----------  172 (410)
T ss_dssp             SSSEEEEEESS--------------SCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred             CCCEEEEEeCC--------------CeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCCC----------
Confidence            45677777642              3588899887654322  111111122233322267777777642          


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                        .+.+||..+.+-..  .+........++.+..++...+.|+.++
T Consensus       173 --~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D~  214 (410)
T 1vyh_C          173 --TIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRDK  214 (410)
T ss_dssp             --CCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             --eEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence              36678877654322  2221122233444433366777777654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=89.88  E-value=12  Score=34.49  Aligned_cols=97  Identities=7%  Similarity=0.022  Sum_probs=48.6

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+++.|+.              ...+.+||..+.+-...  +......-.++.+..++.+++.|+.+           
T Consensus       108 ~~~~l~~~~~--------------dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d-----------  160 (420)
T 3vl1_A          108 QMRRFILGTT--------------EGDIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQD-----------  160 (420)
T ss_dssp             SSCEEEEEET--------------TSCEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred             CCCEEEEEEC--------------CCCEEEEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCC-----------
Confidence            5667777764              24588899876654332  11111222333332226666677653           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                       ..+.+||..+.+-..  .+........++.+..++...+.|+.++.
T Consensus       161 -~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~  204 (420)
T 3vl1_A          161 -MQLKIWSVKDGSNPR--TLIGHRATVTDIAIIDRGRNVLSASLDGT  204 (420)
T ss_dssp             -SEEEEEETTTCCCCE--EEECCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             -CeEEEEeCCCCcCce--EEcCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence             248889988764211  11111112233333323666667776553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=89.74  E-value=0.13  Score=51.32  Aligned_cols=35  Identities=17%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             CCCChHHHHHHHhcCC-CcchhHHHHhhhHhHHhhh
Q 014650           21 IPGLPNDVASLILAFV-PYSHQSRLKQTCRSWFLFF   55 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~l-p~~~~~~~~~v~k~W~~l~   55 (421)
                      ...||+|++.+||+++ +..+..++..|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3579999999999999 8999999999999999873

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=89.71  E-value=9.9  Score=33.30  Aligned_cols=82  Identities=12%  Similarity=0.058  Sum_probs=43.1

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ..+..+|..+++....-.+...    ...-.+++.. ++..++.|+.+              ..+.+||..+.+-...- 
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~----~~~V~~v~~~~~~~~l~sgs~D--------------g~v~iw~~~~~~~~~~~-  105 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKEGNYLAVGTSS--------------AEVQLWDVQQQKRLRNM-  105 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCST----TCCEEEEEECTTSSEEEEEETT--------------SEEEEEETTTTEEEEEE-
T ss_pred             CEEEEEECCCCCEEEEEEecCC----CCeEEEEEECCCCCEEEEEECC--------------CcEEEeecCCceeEEEe-
Confidence            3588999998887654333321    0111222222 56677777742              46888998887643222 


Q ss_pred             cCCCccceEEEEEccCCEEEEEcCC
Q 014650          163 MISPRGSFACAAVRSLNQIIVAGGG  187 (421)
Q Consensus       163 ~~~~r~~~~~~~~~~~~~iyv~GG~  187 (421)
                       ........+....  +.+.+.|+.
T Consensus       106 -~~h~~~~~~~~~~--~~~l~s~~~  127 (318)
T 4ggc_A          106 -TSHSARVGSLSWN--SYILSSGSR  127 (318)
T ss_dssp             -ECCSSCEEEEEEE--TTEEEEEET
T ss_pred             -cCccceEEEeecC--CCEEEEEec
Confidence             1112222333444  566666664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=89.67  E-value=11  Score=33.65  Aligned_cols=119  Identities=6%  Similarity=-0.075  Sum_probs=63.4

Q ss_pred             eEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEe
Q 014650           73 LLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFN  151 (421)
Q Consensus        73 ~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd  151 (421)
                      .+++.+..  ...++.||+.+++...+...+.      ..-.+++.. ++.+|+.......          ....+++||
T Consensus        57 ~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~------~~~~~i~~~~dg~l~v~~~~~~~----------~~~~i~~~d  118 (333)
T 2dg1_A           57 QLFLLDVF--EGNIFKINPETKEIKRPFVSHK------ANPAAIKIHKDGRLFVCYLGDFK----------STGGIFAAT  118 (333)
T ss_dssp             CEEEEETT--TCEEEEECTTTCCEEEEEECSS------SSEEEEEECTTSCEEEEECTTSS----------SCCEEEEEC
T ss_pred             CEEEEECC--CCEEEEEeCCCCcEEEEeeCCC------CCcceEEECCCCcEEEEeCCCCC----------CCceEEEEe
Confidence            35554432  2358899999888776532111      122334433 6778877542110          124799999


Q ss_pred             CccCceeec-cccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC
Q 014650          152 FLTFSWERI-APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM  216 (421)
Q Consensus       152 ~~t~~W~~~-~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~  216 (421)
                      +.+.+.+.+ ....... ......+..++++|+......      .......++++|+.+.+...+
T Consensus       119 ~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~l~v~~~~~~------~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAY-CIDDMVFDSKGGFYFTDFRGY------STNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             TTSCSCEEEECSSSSCC-CEEEEEECTTSCEEEEECCCB------TTBCCEEEEEECTTSCCEEEE
T ss_pred             CCCCEEEEEEccCccCC-cccceEECCCCCEEEEecccc------ccCCCceEEEEeCCCCEEEEe
Confidence            988776533 2221122 222233332378888654210      112245688899887766544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=89.66  E-value=11  Score=33.81  Aligned_cols=86  Identities=10%  Similarity=0.022  Sum_probs=45.3

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC--ceEECCCC---
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN--EWVSMDEM---  219 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~---  219 (421)
                      ..+.++|+.+.+....... .........+++.+++|||....+            ..+.+||+...  .-..+...   
T Consensus        69 ~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~~g~l~v~d~~~------------~~v~~~~~~g~~~~~~~~~~~~~~  135 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGK-NLFYLPHGLSIDTDGNYWVTDVAL------------HQVFKLDPHSKEGPLLILGRSMQP  135 (329)
T ss_dssp             CCEEEECTTTCCEEEEECT-TTCSSEEEEEECTTSCEEEEETTT------------TEEEEECTTCSSCCSEEESBTTBC
T ss_pred             CcEEEEECCCCeEEeccCC-CccCCceEEEECCCCCEEEEECCC------------CEEEEEeCCCCeEEEEEecccCCC
Confidence            4699999987765432211 111122233333237899886642            35888998765  22222211   


Q ss_pred             ---CCCCCCeeEEEEcc-CCeEEEEecc
Q 014650          220 ---PRFRAGCVGFVAEE-SGEFWVMGGY  243 (421)
Q Consensus       220 ---~~~r~~~~~~~~~~-~~~iyv~GG~  243 (421)
                         ........++++.. ++.||+..++
T Consensus       136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A          136 GSDQNHFCQPTDVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             CCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred             CCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence               11111234556653 4899999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.66  E-value=10  Score=33.36  Aligned_cols=100  Identities=9%  Similarity=0.040  Sum_probs=49.8

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEcc--CCEEEEEcCCccccccCCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRS--LNQIIVAGGGSRHSLFGAAG  197 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  197 (421)
                      ++..++.|+.+              ..+.+||..+.+.+.+..+..-...-..+.+..  ++.+++.|+.+         
T Consensus        20 ~g~~las~s~D--------------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D---------   76 (297)
T 2pm7_B           20 YGKRMATCSSD--------------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD---------   76 (297)
T ss_dssp             TSSEEEEEETT--------------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT---------
T ss_pred             CCCEEEEEeCC--------------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC---------
Confidence            56677777742              357888876654433333322111122223210  15666777754         


Q ss_pred             CccceEEEEECCCCceEECCCCCCCCCCeeEEEEccC--CeEEEEeccCC
Q 014650          198 SRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEES--GEFWVMGGYGD  245 (421)
Q Consensus       198 ~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~  245 (421)
                         ..+.++|..++.|..+..+........++.+..+  +.+.+.|+.++
T Consensus        77 ---~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           77 ---GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             ---TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ---CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence               2478899988877554322211112223333211  45666666554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=89.59  E-value=11  Score=33.69  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+-..  .+........++.+..++..++.|+.+            ..+.+||..+.+-...-....   
T Consensus        54 g~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~---  116 (369)
T 3zwl_B           54 SSASVWYSLNGERLG--TLDGHTGTIWSIDVDCFTKYCVTGSAD------------YSIKLWDVSNGQCVATWKSPV---  116 (369)
T ss_dssp             SCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT------------TEEEEEETTTCCEEEEEECSS---
T ss_pred             CEEEEEeCCCchhhh--hhhhcCCcEEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCcEEEEeecCC---
Confidence            358888877655322  222222222333332225666666653            248889988876443222111   


Q ss_pred             CeeEEEEccCCeEEEEeccC
Q 014650          225 GCVGFVAEESGEFWVMGGYG  244 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~  244 (421)
                      ...++.+..+++.++.++.+
T Consensus       117 ~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B          117 PVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             CEEEEEECTTSSEEEEEECC
T ss_pred             CeEEEEEccCCCEEEEecCC
Confidence            12233333335666655543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=89.56  E-value=11  Score=33.40  Aligned_cols=110  Identities=13%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-C-CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-G-PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      ..+..+|+.+.+-...-.++..   .. ....++.. + +.+|+.+..              ...+++||+.+.+-...-
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~---~~-~~~~~~~s~dg~~l~v~~~~--------------~~~v~~~d~~~~~~~~~~   72 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADA---GP-TPMVPMVAPGGRIAYATVNK--------------SESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTC---TT-CCCCEEECTTSSEEEEEETT--------------TTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEECCCCcEEEEEEcCCC---CC-CccceEEcCCCCEEEEEeCC--------------CCeEEEEECCCCCeEeeE
Confidence            4588899988765443223320   00 01223322 3 478877652              356999999887644321


Q ss_pred             ccCCC----ccceEEEEEccCCEEEEEcCCccccccCCCCC--ccceEEEEECCCCceE
Q 014650          162 PMISP----RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS--RISSVERYDVAKNEWV  214 (421)
Q Consensus       162 ~~~~~----r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--~~~~~~~yd~~t~~W~  214 (421)
                      ..+.+    ..-+.++...+...+|+.....+.   .....  ....+.+||..+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~~~~~~i~v~d~~~~~~~  128 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRL---ELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEE---CSSCEEECCCEEEEEETTTTEEE
T ss_pred             EcCCcccccccccceEECCCCCEEEEEeccccc---ccccccccCceEEEEECCCCcEE
Confidence            22110    011223332221467777421100   00000  1357889999887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=89.55  E-value=12  Score=34.23  Aligned_cols=55  Identities=9%  Similarity=-0.018  Sum_probs=29.2

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC----CCCeeEEEEccCC-eEEEEeccCC
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF----RAGCVGFVAEESG-EFWVMGGYGD  245 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~~-~iyv~GG~~~  245 (421)
                      +.+++.|+.+            ..+.+||..+.+-...-..+..    .....++.+..++ .+++.|+.++
T Consensus       178 ~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          178 AHVFASAGSS------------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             TTEEEEESSS------------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             CcEEEEEcCC------------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence            4677777754            2488899988765432222211    1223334443323 5777776554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.48  E-value=9.5  Score=32.75  Aligned_cols=60  Identities=13%  Similarity=0.016  Sum_probs=36.1

Q ss_pred             CCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC-CceEECCCC
Q 014650          144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK-NEWVSMDEM  219 (421)
Q Consensus       144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t-~~W~~~~~~  219 (421)
                      ...+++||..+.+...+......   ...+.+..+++.+++++.             ..+.++|..+ .+...+...
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~---v~~~~~spdg~~l~~~~~-------------~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPEL---FEAPNWSPDGKYLLLNSE-------------GLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSC---CEEEEECTTSSEEEEEET-------------TEEEEEESSSCCSCEECCCT
T ss_pred             ceeEEEEeCCCCceeeeccCCcc---eEeeEECCCCCEEEEEcC-------------CeEEEEeCCCCCCceEeccc
Confidence            45799999998887665443221   122233222565555441             2588999998 877666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=89.31  E-value=12  Score=33.55  Aligned_cols=98  Identities=10%  Similarity=0.116  Sum_probs=51.2

Q ss_pred             CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEcc-CCEEEEEcCCccccccCCCCCc
Q 014650          121 PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRS-LNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       121 ~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      +.+++.|+.              -..+.+||..+.+-..  .+......-.++.+.. ++.+++.|+.+           
T Consensus        85 ~~~l~~~~~--------------dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~d-----------  137 (366)
T 3k26_A           85 HPLLAVAGS--------------RGIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKD-----------  137 (366)
T ss_dssp             CEEEEEEET--------------TCEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETT-----------
T ss_pred             CCEEEEecC--------------CCEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCC-----------
Confidence            467777774              2468899987754322  1221112222333321 26777777754           


Q ss_pred             cceEEEEECCCCceEEC-CCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          200 ISSVERYDVAKNEWVSM-DEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                       ..+.+||..+.+-... ..+........++.+..++...+.|+.++.
T Consensus       138 -g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          138 -HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             -SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             -CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC
Confidence             2488899988764332 222222222334444333666777776553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=89.27  E-value=11  Score=33.14  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             CeEEEEeCccCceeecccc--CCCccceEEEEEccC-CEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC-CCCC
Q 014650          145 DSAFRFNFLTFSWERIAPM--ISPRGSFACAAVRSL-NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM-DEMP  220 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~--~~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~  220 (421)
                      ..+++||+.+.+++.+...  ...........+..+ +++|+....             ..+.+||++ ++...+ ....
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-------------~~l~~~d~~-g~~~~~~~~~~  111 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-------------LGLLVVQTD-GTFEEIAKKDS  111 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------------TEEEEEETT-SCEEECCSBCT
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-------------CCEEEEeCC-CCEEEEEeccC
Confidence            4699999988888765420  001112223334433 678887642             148889998 777665 3321


Q ss_pred             C--CCCCeeEEEEccCCeEEEEec
Q 014650          221 R--FRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       221 ~--~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      .  +......+++..++.+|+...
T Consensus       112 ~~~~~~~~~~i~~d~~g~l~v~~~  135 (314)
T 1pjx_A          112 EGRRMQGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             TSCBCBCCCEEEECTTSCEEEEEC
T ss_pred             CCccccCCcCEEECCCCCEEEEec
Confidence            1  111223455544478988764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.22  E-value=13  Score=33.88  Aligned_cols=66  Identities=6%  Similarity=-0.114  Sum_probs=35.8

Q ss_pred             CCeEEEEeCccCceeeccccCCCccceEEEEE-ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650          144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE  218 (421)
Q Consensus       144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~  218 (421)
                      ...++++|..+.+.+.+..... ...+....- +. ++|+++.. .      ........++.+|..+..++.+..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~-~~~~~~~sp~dg-~~l~~~~~-~------~~~~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTA-WLGHPIYRPFDD-STVGFCHE-G------PHDLVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEE-EEEEEEEC-S------CSSSCSCCCEEEETTSCCCEESSC
T ss_pred             cceEEEEECCCCcEEeeccCCc-ccccceECCCCC-CEEEEEec-C------CCCCCCceEEEEECCCCceeEeec
Confidence            3478999998887766653221 111111121 20 34555532 1      011223568899998888777655

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=89.12  E-value=20  Score=36.07  Aligned_cols=72  Identities=11%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCC--------ccceEEEEEccCCEEEEE
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISP--------RGSFACAAVRSLNQIIVA  184 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv~  184 (421)
                      +.++.++.||+....               ..++.+|..|.+  |+.-...+..        ....+.++.+  ++||+.
T Consensus        61 ~P~v~~g~vyv~~~~---------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~  123 (668)
T 1kv9_A           61 TPLFHDGVIYTSMSW---------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG--DKVYVG  123 (668)
T ss_dssp             CCEEETTEEEEEEGG---------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB--TEEEEE
T ss_pred             CCEEECCEEEEECCC---------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC--CEEEEE
Confidence            345679999988653               357788876654  7754332211        0122345566  888876


Q ss_pred             cCCccccccCCCCCccceEEEEECCCCc--eEEC
Q 014650          185 GGGSRHSLFGAAGSRISSVERYDVAKNE--WVSM  216 (421)
Q Consensus       185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~  216 (421)
                      ...             ..+..+|.++.+  |+.-
T Consensus       124 ~~d-------------g~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A          124 TLD-------------GRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             CTT-------------SEEEEEETTTCCEEEEEE
T ss_pred             cCC-------------CEEEEEECCCCCEeeeec
Confidence            431             248899999876  8764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=89.01  E-value=13  Score=33.53  Aligned_cols=43  Identities=9%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             eEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      .+.+||..+.+-...  +........++.+..++.+++.|+.++.
T Consensus       165 ~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~~  207 (340)
T 1got_B          165 TCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             CEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            478899888764322  1111112233444333678888876654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=88.85  E-value=12  Score=33.30  Aligned_cols=148  Identities=7%  Similarity=-0.073  Sum_probs=71.2

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCC---C----------CCCcceEEEEe--CCEEEEEcccccCCCCC
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPS---T----------YSLCNFTSISL--GPYIYLLGGSHFDARSF  136 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~---~----------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  136 (421)
                      .++|+...   ...++.||+.+.++..+........   +          ....-++++..  ++.|||....       
T Consensus        31 ~~l~v~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-------  100 (322)
T 2fp8_A           31 KGFYTSVQ---DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-------  100 (322)
T ss_dssp             SSEEEECT---TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-------
T ss_pred             CEEEEEcC---CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-------
Confidence            44555322   2458889998877665421110000   0          00112455555  5789987431       


Q ss_pred             CCCCCCCCCeEEEEeCccCceeeccccCCC-c-cceEEEEEcc-CCEEEEEcCCccccccCC------CCCccceEEEEE
Q 014650          137 PLDRPLPSDSAFRFNFLTFSWERIAPMISP-R-GSFACAAVRS-LNQIIVAGGGSRHSLFGA------AGSRISSVERYD  207 (421)
Q Consensus       137 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~------~~~~~~~~~~yd  207 (421)
                              ..+.+||+.+.+.+.+...... . ......+++. ++.||+........ ...      .......+.+||
T Consensus       101 --------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~-~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A          101 --------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYD-DRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             --------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCC-TTCHHHHHHHTCCCEEEEEEE
T ss_pred             --------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccc-ccccceehcccCCCceEEEEe
Confidence                    2478899887665555332111 1 1122233332 38899875321000 000      001235689999


Q ss_pred             CCCCceEECC-CCCCCCCCeeEEEEccCC-eEEEEec
Q 014650          208 VAKNEWVSMD-EMPRFRAGCVGFVAEESG-EFWVMGG  242 (421)
Q Consensus       208 ~~t~~W~~~~-~~~~~r~~~~~~~~~~~~-~iyv~GG  242 (421)
                      +.+.+.+.+. .+..|    .++++..++ .||+.-.
T Consensus       172 ~~~~~~~~~~~~~~~p----~gia~~~dg~~lyv~d~  204 (322)
T 2fp8_A          172 PSTKETTLLLKELHVP----GGAEVSADSSFVLVAEF  204 (322)
T ss_dssp             TTTTEEEEEEEEESCC----CEEEECTTSSEEEEEEG
T ss_pred             CCCCEEEEeccCCccC----cceEECCCCCEEEEEeC
Confidence            9887765432 11222    234444323 5888743

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=88.81  E-value=14  Score=33.94  Aligned_cols=94  Identities=6%  Similarity=-0.023  Sum_probs=46.7

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .+..||..+.+-...-.-..      ..-.+++.. ++.+++.|+.              -..+.+||..+.+-.  ..+
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~s~s~--------------d~~i~iwd~~~~~~~--~~~  177 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHV------SEITKLKFFPSGEALISSSQ--------------DMQLKIWSVKDGSNP--RTL  177 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSS------SCEEEEEECTTSSEEEEEET--------------TSEEEEEETTTCCCC--EEE
T ss_pred             CEEEEeCCCcceeeeccccc------CccEEEEECCCCCEEEEEeC--------------CCeEEEEeCCCCcCc--eEE
Confidence            47788887766544311110      111222222 4556666664              246889998765421  112


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      ........++.+..++..++.|+.+            ..+.+||..+.+
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d------------~~v~iwd~~~~~  214 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLD------------GTIRLWECGTGT  214 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETT------------SCEEEEETTTTE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCC------------CcEEEeECCCCc
Confidence            1111122222332225666666653            237788888765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=88.76  E-value=19  Score=35.42  Aligned_cols=106  Identities=12%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      .+.+|+....  .+.+..+|+.+.+-...  ++..     ..-|.++..  +.++|+.+.               ...+.
T Consensus       166 ~~~~~V~~~~--~~~V~viD~~t~~v~~~--i~~g-----~~p~~v~~SpDGr~lyv~~~---------------dg~V~  221 (567)
T 1qks_A          166 ENLFSVTLRD--AGQIALIDGSTYEIKTV--LDTG-----YAVHISRLSASGRYLFVIGR---------------DGKVN  221 (567)
T ss_dssp             GGEEEEEETT--TTEEEEEETTTCCEEEE--EECS-----SCEEEEEECTTSCEEEEEET---------------TSEEE
T ss_pred             CceEEEEeCC--CCeEEEEECCCCeEEEE--EeCC-----CCccceEECCCCCEEEEEcC---------------CCeEE
Confidence            4556665542  35688999998765432  2221     222344433  567887642               24699


Q ss_pred             EEeCccCceeeccccCCCccceEEEEEc----cCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          149 RFNFLTFSWERIAPMISPRGSFACAAVR----SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       149 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      +||+.+.+-+.+..++.+..-..+++-.    +...+||....            .+.+.++|..+.+
T Consensus       222 viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------------~~~v~ViD~~t~~  277 (567)
T 1qks_A          222 MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW------------PPQYVIMDGETLE  277 (567)
T ss_dssp             EEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------------TTEEEEEETTTCC
T ss_pred             EEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEcc------------CCeEEEEECCCCc
Confidence            9998633334444444443223333330    21467766442            3457788877755

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=88.42  E-value=14  Score=33.52  Aligned_cols=137  Identities=8%  Similarity=-0.033  Sum_probs=67.5

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcc-eEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCN-FTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      .+++..+.+   ..+..||..+.+....-.....     ... .+++..  ++.+++.|+.              -..+.
T Consensus        87 ~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~~~--------------d~~i~  144 (383)
T 3ei3_B           87 TTVAVGSKG---GDIILWDYDVQNKTSFIQGMGP-----GDAITGMKFNQFNTNQLFVSSI--------------RGATT  144 (383)
T ss_dssp             TEEEEEEBT---SCEEEEETTSTTCEEEECCCST-----TCBEEEEEEETTEEEEEEEEET--------------TTEEE
T ss_pred             CEEEEEcCC---CeEEEEeCCCcccceeeecCCc-----CCceeEEEeCCCCCCEEEEEeC--------------CCEEE
Confidence            445444433   3478899887776554332111     112 223333  3356666653              24688


Q ss_pred             EEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeE
Q 014650          149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVG  228 (421)
Q Consensus       149 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~  228 (421)
                      +||..++....+...........++.+..++..++.|+.+            ..+.+||.....-..+..   ......+
T Consensus       145 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~---h~~~v~~  209 (383)
T 3ei3_B          145 LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST------------GRLLLLGLDGHEIFKEKL---HKAKVTH  209 (383)
T ss_dssp             EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT------------SEEEEEETTSCEEEEEEC---SSSCEEE
T ss_pred             EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC------------CCEEEEECCCCEEEEecc---CCCcEEE
Confidence            8998876665554332211222233332226666777653            357888885443333221   1112233


Q ss_pred             EEEccCCe-EEEEeccCC
Q 014650          229 FVAEESGE-FWVMGGYGD  245 (421)
Q Consensus       229 ~~~~~~~~-iyv~GG~~~  245 (421)
                      +.+..++. +++.|+.++
T Consensus       210 ~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          210 AEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             EEECSSCTTEEEEEETTS
T ss_pred             EEECCCCCCEEEEEeCCC
Confidence            33433244 666666554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=88.27  E-value=23  Score=35.56  Aligned_cols=18  Identities=22%  Similarity=0.267  Sum_probs=13.5

Q ss_pred             cceEEEEECCCCceEECC
Q 014650          200 ISSVERYDVAKNEWVSMD  217 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~  217 (421)
                      ...+.++|..+++-..+.
T Consensus       234 ~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             EEEEEEEETTTTEEEECC
T ss_pred             eeEEEEEECCCCceEeec
Confidence            456889999988766554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=88.13  E-value=26  Score=36.12  Aligned_cols=42  Identities=10%  Similarity=0.162  Sum_probs=26.0

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEee
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVL  364 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~  364 (421)
                      ..|+++|+....=+.+..-...  ....+++++.+++||+.--.
T Consensus       580 ~~I~~~d~dG~~~~~v~~~~~~--l~~P~glav~~~~lYwtD~~  621 (791)
T 3m0c_C          580 HSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDII  621 (791)
T ss_dssp             TEEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETT
T ss_pred             CcEEEEecCCCceEEEecCCCc--cCCCCEEEEeCCEEEEEECC
Confidence            5688888766544444321111  12456888889999998743

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.11  E-value=9.7  Score=38.92  Aligned_cols=85  Identities=11%  Similarity=0.032  Sum_probs=41.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+.+||..+.+....  +........++.+..++..+++|+.+            ..+.+||..+++....-...  ..
T Consensus        35 g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~vw~~~~~~~~~~~~~~--~~   98 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD------------FRIRVFNYNTGEKVVDFEAH--PD   98 (814)
T ss_dssp             SEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT------------SEEEEEETTTCCEEEEEECC--SS
T ss_pred             CEEEEEECCCCceEEE--EecCCCcEEEEEEeCCCCEEEEEeCC------------CeEEEEECCCCcEEEEEecC--CC
Confidence            4688899877654322  11111112222222226666777643            35888999887754321111  11


Q ss_pred             CeeEEEEccCCeEEEEeccCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ...++.+..++...+.|+.++
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg  119 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDL  119 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTS
T ss_pred             CEEEEEEeCCCCEEEEEcCCC
Confidence            223334433355666666544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=87.04  E-value=15  Score=32.23  Aligned_cols=31  Identities=6%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             CCeEEEEEeecCCCccccccccccccceeeEEEEEeCCc-ceeeEecccC
Q 014650          355 DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK-KTWRYIFTKP  403 (421)
Q Consensus       355 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~-~~W~~i~~~p  403 (421)
                      ++++++.||.++                  .|.+||.++ +.|..+..+.
T Consensus       317 ~~~~l~s~~~dg------------------~v~iw~~~~~~~~~~~~~~~  348 (351)
T 3f3f_A          317 TGTILSSAGDDG------------------KVRLWKATYSNEFKCMSVIT  348 (351)
T ss_dssp             SSCCEEEEETTS------------------CEEEEEECTTSCEEEEEEEC
T ss_pred             CCCEEEEecCCC------------------cEEEEecCcCcchhheeehc
Confidence            567777777663                  477888765 4787776554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=86.78  E-value=18  Score=32.95  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=25.6

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      +.++++|+.+            ..+.+||.....-..+..   ......++.+..++..++.++.++
T Consensus       120 ~~~l~~~~~d------------g~i~i~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~  171 (425)
T 1r5m_A          120 GNSIVTGVEN------------GELRLWNKTGALLNVLNF---HRAPIVSVKWNKDGTHIISMDVEN  171 (425)
T ss_dssp             SSEEEEEETT------------SCEEEEETTSCEEEEECC---CCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCEEEEEeCC------------CeEEEEeCCCCeeeeccC---CCccEEEEEECCCCCEEEEEecCC
Confidence            6677777653            237788844433333322   111223344433356666666544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=86.45  E-value=0.48  Score=44.16  Aligned_cols=66  Identities=11%  Similarity=-0.049  Sum_probs=30.9

Q ss_pred             EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccC
Q 014650          117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFG  194 (421)
Q Consensus       117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~  194 (421)
                      ++.++.||+.+.               ...++.+|..+.+  |+.-.  ....  .+.++.+  +.+|+.++.+      
T Consensus         6 ~v~~~~v~~gs~---------------dg~v~a~d~~tG~~~W~~~~--~~~~--s~p~~~~--g~~~v~~s~d------   58 (369)
T 2hz6_A            6 TLPETLLFVSTL---------------DGSLHAVSKRTGSIKWTLKE--DPVL--QVPTHVE--EPAFLPDPND------   58 (369)
T ss_dssp             --CTTEEEEEET---------------TSEEEEEETTTCCEEEEEEC--CCSC--CCC-------CCEEECTTT------
T ss_pred             eeeCCEEEEEcC---------------CCEEEEEECCCCCEEEEecC--CCce--ecceEcC--CCEEEEeCCC------
Confidence            345677776543               1358889987654  76533  1111  1223344  7788876543      


Q ss_pred             CCCCccceEEEEECCCC--ceEE
Q 014650          195 AAGSRISSVERYDVAKN--EWVS  215 (421)
Q Consensus       195 ~~~~~~~~~~~yd~~t~--~W~~  215 (421)
                            ..+..+|.+++  .|+.
T Consensus        59 ------g~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A           59 ------GSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             ------CCEEEC-----CCSEEC
T ss_pred             ------CEEEEEECCCCceeeee
Confidence                  23788888765  3653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=86.33  E-value=21  Score=33.09  Aligned_cols=116  Identities=10%  Similarity=0.017  Sum_probs=64.9

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      ..+..+++.......+..-.       ....+++..  ++.||+.--              ....++++++.....+.+.
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~-------~~~~gl~~d~~~~~ly~~D~--------------~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNL-------ENAIALDFHHRRELVFWSDV--------------TLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSC-------SCEEEEEEETTTTEEEEEET--------------TTTEEEEEETTSCCEEEEE
T ss_pred             ccceeeccCCCcEEEEecCC-------CccEEEEEecCCCeEEEEeC--------------CCCcEEEEecCCCCcEEEE
Confidence            34778888776665543211       122344433  688998853              2357999999887655542


Q ss_pred             c--cCCCccceEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC--CCCCCCCCCeeEEEEc-cC
Q 014650          162 P--MISPRGSFACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM--DEMPRFRAGCVGFVAE-ES  234 (421)
Q Consensus       162 ~--~~~~r~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~  234 (421)
                      .  +..|   .++++.  +  +.||+.-..            ...++++++....-+.+  ..+..|    .++++. .+
T Consensus       155 ~~~~~~p---~glavd~~~--g~lY~~d~~------------~~~I~~~~~dg~~~~~l~~~~l~~P----~giavdp~~  213 (386)
T 3v65_B          155 STGLESP---GGLAVDWVH--DKLYWTDSG------------TSRIEVANLDGAHRKVLLWQSLEKP----RAIALHPME  213 (386)
T ss_dssp             CSSCSCC---CCEEEETTT--TEEEEEETT------------TTEEEECBTTSCSCEEEECSSCSCE----EEEEEETTT
T ss_pred             eCCCCCc---cEEEEEeCC--CeEEEEcCC------------CCeEEEEeCCCCceEEeecCCCCCC----cEEEEEcCC
Confidence            2  2222   233333  4  899998653            23577777765543332  222333    345554 33


Q ss_pred             CeEEEEe
Q 014650          235 GEFWVMG  241 (421)
Q Consensus       235 ~~iyv~G  241 (421)
                      +.||+.-
T Consensus       214 g~ly~td  220 (386)
T 3v65_B          214 GTIYWTD  220 (386)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEec
Confidence            7888874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.73  E-value=18  Score=31.95  Aligned_cols=99  Identities=8%  Similarity=-0.023  Sum_probs=51.9

Q ss_pred             eEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccc
Q 014650          114 FTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSL  192 (421)
Q Consensus       114 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  192 (421)
                      ..++.. ++.||+..-.              ...+++||+.+.. ......  +..-+++++..+ +++||.....    
T Consensus        35 egia~~~~g~lyv~d~~--------------~~~I~~~d~~g~~-~~~~~~--~~~p~gia~~~d-G~l~vad~~~----   92 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHE--------------VGEIVSITPDGNQ-QIHATV--EGKVSGLAFTSN-GDLVATGWNA----   92 (306)
T ss_dssp             EEEEECTTSCEEEEETT--------------TTEEEEECTTCCE-EEEEEC--SSEEEEEEECTT-SCEEEEEECT----
T ss_pred             ceEEECCCCCEEEEeCC--------------CCeEEEECCCCce-EEEEeC--CCCceeEEEcCC-CcEEEEeccC----
Confidence            444443 5678888531              3468999987643 222222  222233444333 7899876421    


Q ss_pred             cCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEe
Q 014650          193 FGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG  241 (421)
Q Consensus       193 ~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~G  241 (421)
                            ....+..||+.+.+.+.+...+..+.. .+.+...++.+|+..
T Consensus        93 ------~~~~v~~~d~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~v~d  134 (306)
T 2p4o_A           93 ------DSIPVVSLVKSDGTVETLLTLPDAIFL-NGITPLSDTQYLTAD  134 (306)
T ss_dssp             ------TSCEEEEEECTTSCEEEEEECTTCSCE-EEEEESSSSEEEEEE
T ss_pred             ------CcceEEEEcCCCCeEEEEEeCCCcccc-CcccccCCCcEEEEE
Confidence                  012477889888887665444433322 222222225667653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=84.83  E-value=35  Score=34.43  Aligned_cols=73  Identities=14%  Similarity=0.159  Sum_probs=44.8

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCC--------ccceEEEEEccCCEEEEE
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISP--------RGSFACAAVRSLNQIIVA  184 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv~  184 (421)
                      +.++.++.||+....               ..++.+|..|.+  |+.-...+..        ....+.++.+  ++||+.
T Consensus        65 ~P~v~~g~vyv~~~~---------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~v~v~  127 (689)
T 1yiq_A           65 TPIVVDGVMYTTGPF---------------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK--GKVYVG  127 (689)
T ss_dssp             CCEEETTEEEEECGG---------------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET--TEEEEE
T ss_pred             cCEEECCEEEEEcCC---------------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC--CEEEEE
Confidence            345679999987652               348888876654  8754332211        1112345566  888876


Q ss_pred             cCCccccccCCCCCccceEEEEECCCCc--eEECC
Q 014650          185 GGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMD  217 (421)
Q Consensus       185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~  217 (421)
                      ...             ..+..+|.+|++  |+.-.
T Consensus       128 ~~d-------------g~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A          128 VLD-------------GRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             CTT-------------SEEEEEETTTCCEEEEEEC
T ss_pred             ccC-------------CEEEEEECCCCCEeeeecC
Confidence            531             248889998876  87643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=84.70  E-value=20  Score=31.43  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=41.7

Q ss_pred             CeEEEEeCccC--ceeeccccCCCccceEEEEEcc--CCEEEEEcCCccccccCCCCCccceEEEEECCCC-------ce
Q 014650          145 DSAFRFNFLTF--SWERIAPMISPRGSFACAAVRS--LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN-------EW  213 (421)
Q Consensus       145 ~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~-------~W  213 (421)
                      ..+.+||..+.  .++.+..+......-.++.+..  ++.+++.|+.+            ..+.+||..+.       .|
T Consensus        33 g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d------------g~v~vwd~~~~~~~~~~~~~  100 (351)
T 3f3f_A           33 QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD------------KTVKLWEEDPDQEECSGRRW  100 (351)
T ss_dssp             SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT------------SCEEEEEECTTSCTTSSCSE
T ss_pred             CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC------------CeEEEEecCCCcccccccCc
Confidence            35777776643  3444443332222233333321  15677777754            23777777664       23


Q ss_pred             EECCCCCCCCCCeeEEEEccC--CeEEEEeccCC
Q 014650          214 VSMDEMPRFRAGCVGFVAEES--GEFWVMGGYGD  245 (421)
Q Consensus       214 ~~~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~  245 (421)
                      ..+..+........++.+..+  +.+.+.|+.++
T Consensus       101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  134 (351)
T 3f3f_A          101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG  134 (351)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred             ceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence            333222222222334444432  45666666544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.57  E-value=37  Score=34.49  Aligned_cols=78  Identities=10%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC--CCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM--PRFR  223 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~r  223 (421)
                      -+++||+.++++....... ...-.+++.-+  +.|++...              ..+.+||+.+++.+.....  ..+.
T Consensus        83 Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~--g~lWigt~--------------~Gl~~~~~~~~~~~~~~~~~~~l~~  145 (758)
T 3ott_A           83 GILVYNYRADRYEQPETDF-PTDVRTMALQG--DTLWLGAL--------------NGLYTYQLQSRKLTSFDTRRNGLPN  145 (758)
T ss_dssp             EEEEEETTTTEECCCSCCC-CSCEEEEEEET--TEEEEEET--------------TEEEEEETTTCCEEEECHHHHCCSC
T ss_pred             CeEEEeCCCCEEECcccCC-CceEEEEEecC--CcEEEEcC--------------CcceeEeCCCCeEEEeccCCCCcCC
Confidence            4789999998887521111 11111222233  77777532              1378899998888765211  0111


Q ss_pred             CCeeEEEEccCCeEEEE
Q 014650          224 AGCVGFVAEESGEFWVM  240 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~  240 (421)
                      ....++....++.|++.
T Consensus       146 ~~i~~i~~d~~g~lWig  162 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVG  162 (758)
T ss_dssp             SCEEEEEECTTCCEEEE
T ss_pred             CeEEEEEEcCCCCEEEE
Confidence            12234444434788884

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=83.89  E-value=28  Score=32.44  Aligned_cols=118  Identities=10%  Similarity=-0.007  Sum_probs=62.9

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc----e
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS----W  157 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~----W  157 (421)
                      ..+..+|.....+..+.+-.       ..-.+++..  ++.||+.--.              ...++++++....    .
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~-------~~~~~l~~d~~~~~lywsD~~--------------~~~I~~~~~~g~~~~~~~  150 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNL-------RNVVALDTEVASNRIYWSDLS--------------QRMICSTQLDRAHGVSSY  150 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSC-------SCEEEEEEETTTTEEEEEETT--------------TTEEEEEEC------CCC
T ss_pred             ceeEEEccCCcceeEecccc-------CcceEEeeeeccCceEEEecC--------------CCeEEEEEcccCCCCCcc
Confidence            34777888777666552211       223444443  6899988542              3568888876521    2


Q ss_pred             eeccccCCCccceEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC--CCCCCCCCeeEEEEc-
Q 014650          158 ERIAPMISPRGSFACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD--EMPRFRAGCVGFVAE-  232 (421)
Q Consensus       158 ~~~~~~~~~r~~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~~-  232 (421)
                      ..+..- ....-.++++.  +  +.||+....            ...++++++....-+.+.  .+..|+    ++++. 
T Consensus       151 ~~~~~~-~~~~p~glavD~~~--~~lY~~d~~------------~~~I~~~~~~g~~~~~l~~~~~~~P~----~iavdp  211 (400)
T 3p5b_L          151 DTVISR-DIQAPDGLAVDWIH--SNIYWTDSV------------LGTVSVADTKGVKRKTLFRENGSKPR----AIVVDP  211 (400)
T ss_dssp             EEEECS-SCSCEEEEEEETTT--TEEEEEETT------------TTEEEEECTTTCSEEEEEECSSCCEE----EEEEET
T ss_pred             eEEEeC-CCCCcccEEEEecC--CceEEEECC------------CCeEEEEeCCCCceEEEEeCCCCCcc----eEEEec
Confidence            222110 11112234443  4  899998653            235888888876554432  233333    45553 


Q ss_pred             cCCeEEEEe
Q 014650          233 ESGEFWVMG  241 (421)
Q Consensus       233 ~~~~iyv~G  241 (421)
                      ..+.||+.-
T Consensus       212 ~~g~ly~td  220 (400)
T 3p5b_L          212 VHGFMYWTD  220 (400)
T ss_dssp             TTTEEEEEE
T ss_pred             ccCeEEEEe
Confidence            237888875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=83.85  E-value=24  Score=31.70  Aligned_cols=115  Identities=11%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             CCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc-CCCccc
Q 014650           92 ANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM-ISPRGS  169 (421)
Q Consensus        92 ~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~  169 (421)
                      .-.+|+.+. ++..     ..-.++... .+.+|++|..               ..+++-.-.-.+|+.+... +.+...
T Consensus        23 ~g~~W~~~~-~~~~-----~~~~~v~~~~~~~~~~~G~~---------------g~i~~s~DgG~tW~~~~~~~~~~~~~   81 (327)
T 2xbg_A           23 DYNPWEAIQ-LPTT-----ATILDMSFIDRHHGWLVGVN---------------ATLMETRDGGQTWEPRTLVLDHSDYR   81 (327)
T ss_dssp             SSCCEEEEE-CSCS-----SCEEEEEESSSSCEEEEETT---------------TEEEEESSTTSSCEECCCCCSCCCCE
T ss_pred             CCCCceEee-cCCC-----CcEEEEEECCCCcEEEEcCC---------------CeEEEeCCCCCCCeECCCCCCCCCcc
Confidence            346788874 3322     122233333 4678886531               2366655556789988642 222222


Q ss_pred             eEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC-CCCCCeeEEEEccCCeEEEEec
Q 014650          170 FACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP-RFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      ...+.+.. +.+|++|..             ..+.+-.-.-.+|+.+.... .+. ....+...+++.+|+.|.
T Consensus        82 ~~~i~~~~-~~~~~~g~~-------------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~  140 (327)
T 2xbg_A           82 FNSVSFQG-NEGWIVGEP-------------PIMLHTTDGGQSWSQIPLDPKLPG-SPRLIKALGNGSAEMITN  140 (327)
T ss_dssp             EEEEEEET-TEEEEEEET-------------TEEEEESSTTSSCEECCCCTTCSS-CEEEEEEEETTEEEEEET
T ss_pred             EEEEEecC-CeEEEEECC-------------CeEEEECCCCCCceECccccCCCC-CeEEEEEECCCCEEEEeC
Confidence            23333332 788887531             12332222235799876431 121 122333333378888774

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=83.81  E-value=23  Score=31.48  Aligned_cols=96  Identities=13%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec-c
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI-A  161 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~-~  161 (421)
                      .+..||..+.+-...  +...   . ..-.+++..  ++.+++.|+.              -..+.+||..+.+-... .
T Consensus        96 ~i~v~d~~~~~~~~~--~~~~---~-~~i~~~~~~~~~~~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           96 IIRIINPITMQCIKH--YVGH---G-NAINELKFHPRDPNLLLSVSK--------------DHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             EEEEECTTTCCEEEE--EESC---C-SCEEEEEECSSCTTEEEEEET--------------TSCEEEEETTTTEEEEEEC
T ss_pred             EEEEEEchhceEeee--ecCC---C-CcEEEEEECCCCCCEEEEEeC--------------CCeEEEEEeecCeEEEEec
Confidence            477888876654322  1110   0 111222222  4567777764              24588999887654322 1


Q ss_pred             ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650          162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE  212 (421)
Q Consensus       162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~  212 (421)
                      .+.........+.+..++..++.|+.+            ..+.+||..+.+
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~  194 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMD------------HSLKLWRINSKR  194 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETT------------SCEEEEESCSHH
T ss_pred             ccccccCceeEEEECCCCCEEEEecCC------------CCEEEEECCCCc
Confidence            112222222333332225666666653            247788887653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=83.46  E-value=22  Score=30.97  Aligned_cols=109  Identities=11%  Similarity=-0.025  Sum_probs=55.5

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP  162 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~  162 (421)
                      ..++.||+.++ ...+.. +.      ..-.+++.. ++.||+....              ...+++||+.+.+.+.+..
T Consensus        50 ~~i~~~~~~~~-~~~~~~-~~------~~~~~l~~~~dg~l~v~~~~--------------~~~i~~~d~~~g~~~~~~~  107 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMH-PS------HHQNGHCLNKQGHLIACSHG--------------LRRLERQREPGGEWESIAD  107 (296)
T ss_dssp             TEEEEEETTSC-EEEEES-SC------SSEEEEEECTTCCEEEEETT--------------TTEEEEECSTTCCEEEEEC
T ss_pred             CEEEEEECCCC-eEEEEC-CC------CCcceeeECCCCcEEEEecC--------------CCeEEEEcCCCCcEEEEee
Confidence            35889999887 555432 21      122344433 6778776531              2469999998888776543


Q ss_pred             cCCC-cc-c-eEEEEEccCCEEEEE----cCCccccccC-CCCCccceEEEEECCCCceEEC
Q 014650          163 MISP-RG-S-FACAAVRSLNQIIVA----GGGSRHSLFG-AAGSRISSVERYDVAKNEWVSM  216 (421)
Q Consensus       163 ~~~~-r~-~-~~~~~~~~~~~iyv~----GG~~~~~~~~-~~~~~~~~~~~yd~~t~~W~~~  216 (421)
                      .... .. . ..+++.. ++++|+.    |......... ........+++|++. ++...+
T Consensus       108 ~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (296)
T 3e5z_A          108 SFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP  167 (296)
T ss_dssp             EETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred             ccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence            2111 11 1 1233332 3889987    3311000000 001113468889887 554443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=83.20  E-value=23  Score=31.11  Aligned_cols=43  Identities=12%  Similarity=0.088  Sum_probs=22.7

Q ss_pred             eEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650          202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      .+.+||..+.+-...-...  .....++.+..++++.+.|+.++.
T Consensus       196 ~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          196 LVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             CEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred             EEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCe
Confidence            3778888887643321111  112233444333677777876653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=82.92  E-value=24  Score=31.04  Aligned_cols=79  Identities=10%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC-CCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP-RFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r  223 (421)
                      ..+++|++ +.+.+.+.. +..  ......++.++++|+....            ...+.+||+. ++.+.+.... ..+
T Consensus        67 ~~i~~~~~-~g~~~~~~~-~~~--~~~gl~~d~dG~l~v~~~~------------~~~v~~~~~~-g~~~~~~~~~~~~~  129 (305)
T 3dr2_A           67 RRVLGWRE-DGTVDVLLD-ATA--FTNGNAVDAQQRLVHCEHG------------RRAITRSDAD-GQAHLLVGRYAGKR  129 (305)
T ss_dssp             TEEEEEET-TSCEEEEEE-SCS--CEEEEEECTTSCEEEEETT------------TTEEEEECTT-SCEEEEECEETTEE
T ss_pred             CEEEEEeC-CCCEEEEeC-CCC--ccceeeECCCCCEEEEECC------------CCEEEEECCC-CCEEEEEeccCCCc
Confidence            56889988 444443322 111  1222233323788877432            1247778876 5555543211 111


Q ss_pred             -CCeeEEEEccCCeEEEE
Q 014650          224 -AGCVGFVAEESGEFWVM  240 (421)
Q Consensus       224 -~~~~~~~~~~~~~iyv~  240 (421)
                       .....+++..++.||+.
T Consensus       130 ~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A          130 LNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             CSCCCCEEECTTSCEEEE
T ss_pred             cCCCCCEEECCCCCEEEe
Confidence             11123444444889985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=82.71  E-value=39  Score=33.25  Aligned_cols=61  Identities=10%  Similarity=-0.034  Sum_probs=36.4

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+||....              .+.+.++|+.|.+-.  ..++.+..-|.++.-.+..++|+.+.             
T Consensus       166 ~~~~~V~~~~--------------~~~V~viD~~t~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~~-------------  216 (567)
T 1qks_A          166 ENLFSVTLRD--------------AGQIALIDGSTYEIK--TVLDTGYAVHISRLSASGRYLFVIGR-------------  216 (567)
T ss_dssp             GGEEEEEETT--------------TTEEEEEETTTCCEE--EEEECSSCEEEEEECTTSCEEEEEET-------------
T ss_pred             CceEEEEeCC--------------CCeEEEEECCCCeEE--EEEeCCCCccceEECCCCCEEEEEcC-------------
Confidence            4677777652              467999999887543  23334433444444322156787643             


Q ss_pred             cceEEEEECC
Q 014650          200 ISSVERYDVA  209 (421)
Q Consensus       200 ~~~~~~yd~~  209 (421)
                      ...+.+||+.
T Consensus       217 dg~V~viD~~  226 (567)
T 1qks_A          217 DGKVNMIDLW  226 (567)
T ss_dssp             TSEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            1358999985

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=82.65  E-value=20  Score=29.81  Aligned_cols=14  Identities=7%  Similarity=0.116  Sum_probs=11.0

Q ss_pred             EEEeCCEEEEEccc
Q 014650          116 SISLGPYIYLLGGS  129 (421)
Q Consensus       116 ~~~~~~~iyv~GG~  129 (421)
                      ++..++.+|+|-|.
T Consensus        11 ~~~~~g~~~fFkg~   24 (196)
T 3c7x_A           11 VAMLRGEMFVFKER   24 (196)
T ss_dssp             EEEETTEEEEEETT
T ss_pred             EEEcCCEEEEEECC
Confidence            44678999999884

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=82.55  E-value=42  Score=33.53  Aligned_cols=66  Identities=8%  Similarity=-0.045  Sum_probs=35.6

Q ss_pred             CCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC-ceEEC
Q 014650          144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN-EWVSM  216 (421)
Q Consensus       144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~-~W~~~  216 (421)
                      ...++++|..+.+-..+............+.+..+++..+++..+       .......+..+|..+. ..+.+
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN-------RAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC-------TTSCEEEEEEEETTTCCEEEEE
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC-------CCCCeeEEEEEECCCCceeeEE
Confidence            357899999887765544221111222333333225533443332       1233457889999988 66554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=81.65  E-value=34  Score=31.89  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=22.0

Q ss_pred             EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC
Q 014650          171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM  216 (421)
Q Consensus       171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~  216 (421)
                      ...+++.+++||++...            ...+.++|++++.-..+
T Consensus       134 ~~la~d~~g~lyv~d~~------------~~~I~~id~~~g~~~~~  167 (409)
T 3hrp_A          134 WGIAAVGNNTVLAYQRD------------DPRVRLISVDDNKVTTV  167 (409)
T ss_dssp             EEEEECSTTEEEEEETT------------TTEEEEEETTTTEEEEE
T ss_pred             eEEEEeCCCCEEEEecC------------CCcEEEEECCCCEEEEe
Confidence            33334333889999763            23588999998765544

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=81.17  E-value=34  Score=31.54  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=14.3

Q ss_pred             EEEecCCceEEEeCCCCceeE
Q 014650          315 VFMLDKFDILRYDMGLNRWLK  335 (421)
Q Consensus       315 ~~~~~~~~v~~yd~~~~~W~~  335 (421)
                      .|.......++||..+.+-..
T Consensus       335 ~YfFkg~~ywr~d~~~~~v~~  355 (365)
T 3ba0_A          335 YYFFQGSNQFEYDFLLQRITK  355 (365)
T ss_dssp             EEEEETTEEEEEETTTTEEEE
T ss_pred             EEEEeCCEEEEEECCccEEec
Confidence            444444678999988876655

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=80.77  E-value=30  Score=30.68  Aligned_cols=96  Identities=6%  Similarity=0.028  Sum_probs=50.2

Q ss_pred             CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCcc
Q 014650          121 PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRI  200 (421)
Q Consensus       121 ~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  200 (421)
                      +.+++.|+.              -..+.+||..+........+......-.++.+..++..++.|+.+            
T Consensus        54 g~~l~~~~~--------------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------------  107 (368)
T 3mmy_A           54 GNFLIAGSW--------------ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD------------  107 (368)
T ss_dssp             SEEEEEEET--------------TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT------------
T ss_pred             ceEEEEECC--------------CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC------------
Confidence            377777764              246888888774433222222112222233332226666666653            


Q ss_pred             ceEEEEECCCCceEECCCCCCCCCCeeEEEE--ccCCeEEEEeccCC
Q 014650          201 SSVERYDVAKNEWVSMDEMPRFRAGCVGFVA--EESGEFWVMGGYGD  245 (421)
Q Consensus       201 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~~~iyv~GG~~~  245 (421)
                      ..+.+||..+.+-..+...   .....++.+  ..++.+++.|+.++
T Consensus       108 g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg  151 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQH---DAPVKTIHWIKAPNYSCVMTGSWDK  151 (368)
T ss_dssp             SEEEEEETTTTEEEEEEEC---SSCEEEEEEEECSSCEEEEEEETTS
T ss_pred             CcEEEEEcCCCCceeeccc---cCceEEEEEEeCCCCCEEEEccCCC
Confidence            2588899998876543221   112233333  33367777777654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=80.70  E-value=34  Score=31.28  Aligned_cols=57  Identities=7%  Similarity=0.089  Sum_probs=28.9

Q ss_pred             CeEEEEeCccCc-e-eeccccCCCccceEEEEEcc-CCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          145 DSAFRFNFLTFS-W-ERIAPMISPRGSFACAAVRS-LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       145 ~~v~~yd~~t~~-W-~~~~~~~~~r~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                      ..+.+||..+.. . ..+..+..-...-.++.+.. ++.+++.|+.+            ..+.+||..++..
T Consensus        57 g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d------------g~v~vw~~~~~~~  116 (402)
T 2aq5_A           57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED------------CTVMVWEIPDGGL  116 (402)
T ss_dssp             CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT------------SEEEEEECCTTCC
T ss_pred             CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC------------CeEEEEEccCCCC
Confidence            458888875432 1 11121211122223333321 26777777753            2488889888753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.61  E-value=35  Score=31.30  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .+..||..+.+-...  +...   . ..-.+++.. ++..++.|+.              -..+.+||..+.+-...-..
T Consensus       146 ~i~iwd~~~~~~~~~--~~~h---~-~~v~~~~~~p~~~~l~s~s~--------------d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          146 LIRIWDIENRKIVMI--LQGH---E-QDIYSLDYFPSGDKLVSGSG--------------DRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             CEEEEETTTTEEEEE--ECCC---S-SCEEEEEECTTSSEEEEEET--------------TSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCcEEEE--EccC---C-CCEEEEEEcCCCCEEEEecC--------------CCcEEEEECCCCeeEEEEEc
Confidence            477888887664332  2211   0 111222222 4555556653              24688899887654332221


Q ss_pred             CCCccceEEEEEcc-CCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCC---CC-CCCeeEEEEccCCeE
Q 014650          164 ISPRGSFACAAVRS-LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMP---RF-RAGCVGFVAEESGEF  237 (421)
Q Consensus       164 ~~~r~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~---~~-r~~~~~~~~~~~~~i  237 (421)
                      ..   ....+.+.. ++++++.|+.+            ..+.+||..+..-.. +....   .. .....++.+..++++
T Consensus       206 ~~---~v~~~~~~~~~~~~l~~~s~d------------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~  270 (393)
T 1erj_A          206 ED---GVTTVAVSPGDGKYIAAGSLD------------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  270 (393)
T ss_dssp             SS---CEEEEEECSTTCCEEEEEETT------------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             CC---CcEEEEEECCCCCEEEEEcCC------------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence            11   122223321 26777787764            237888988776432 21110   11 111233444333677


Q ss_pred             EEEeccCCC
Q 014650          238 WVMGGYGDS  246 (421)
Q Consensus       238 yv~GG~~~~  246 (421)
                      .+.|+.++.
T Consensus       271 l~s~s~d~~  279 (393)
T 1erj_A          271 VVSGSLDRS  279 (393)
T ss_dssp             EEEEETTSE
T ss_pred             EEEEeCCCE
Confidence            777776553

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=80.36  E-value=30  Score=30.36  Aligned_cols=142  Identities=8%  Similarity=0.009  Sum_probs=65.1

Q ss_pred             ccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650           68 NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA  147 (421)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v  147 (421)
                      ....++++..+.+   ..+..||..+.+-...  +...   ...........++..++.|+.              -..+
T Consensus        22 sp~~~~l~s~~~d---g~v~lWd~~~~~~~~~--~~~~---~~~v~~~~~~~~~~~l~s~s~--------------d~~i   79 (304)
T 2ynn_A           22 HPTEPWVLTTLYS---GRVELWNYETQVEVRS--IQVT---ETPVRAGKFIARKNWIIVGSD--------------DFRI   79 (304)
T ss_dssp             CSSSSEEEEEETT---SEEEEEETTTTEEEEE--EECC---SSCEEEEEEEGGGTEEEEEET--------------TSEE
T ss_pred             CCCCCEEEEEcCC---CcEEEEECCCCceeEE--eecc---CCcEEEEEEeCCCCEEEEECC--------------CCEE
Confidence            3455666655543   3477888877654321  1111   001111112225556666664              2468


Q ss_pred             EEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCee
Q 014650          148 FRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCV  227 (421)
Q Consensus       148 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~  227 (421)
                      .+||..+.+-.  ..+..-...-.++.+..++.+++.|+.+            ..+.+||..++. .....+........
T Consensus        80 ~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~sgs~D------------~~v~lWd~~~~~-~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           80 RVFNYNTGEKV--VDFEAHPDYIRSIAVHPTKPYVLSGSDD------------LTVKLWNWENNW-ALEQTFEGHEHFVM  144 (304)
T ss_dssp             EEEETTTCCEE--EEEECCSSCEEEEEECSSSSEEEEEETT------------SCEEEEEGGGTT-EEEEEECCCCSCEE
T ss_pred             EEEECCCCcEE--EEEeCCCCcEEEEEEcCCCCEEEEECCC------------CeEEEEECCCCc-chhhhhcccCCcEE
Confidence            88998776522  1121111112233333225666777754            237778877652 11111111111122


Q ss_pred             EEEEc-cCCeEEEEeccCCC
Q 014650          228 GFVAE-ESGEFWVMGGYGDS  246 (421)
Q Consensus       228 ~~~~~-~~~~iyv~GG~~~~  246 (421)
                      ++.+. .++.+++.|+.++.
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSE
T ss_pred             EEEECCCCCCEEEEEeCCCe
Confidence            33332 12567777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	8e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-05
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	5e-07
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-07
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-04

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 19/215 (8%), Positives = 48/215 (22%), Gaps = 5/215 (2%)

Query: 48  CRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPS 107
                          D H +        +F   PS +  + + + +   +       N  
Sbjct: 167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 226

Query: 108 TYSLCNFTSISLGPYI---YLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164
                   +  +   +    L  G   D +           +         +      + 
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL- 285

Query: 165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224
                    +V   +      GG R  +     + + + E Y   ++ +   +     R 
Sbjct: 286 -YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV 344

Query: 225 GCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYY 259
                +    G  +  GG       +       + 
Sbjct: 345 YHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT 379

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 48.3 bits (113), Expect = 8e-07
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 156 SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS 215
            W     +  P    A A   +  ++++       + FG +   I+    +D +      
Sbjct: 10  RWGPTIDL--PIVPAAAAIEPTSGRVLMWSSYRNDA-FGGSPGGITLTSSWDPSTGIVSD 66

Query: 216 MDEMPRFRAG-CVGFVAEESGEFWVMGGYGDSRT 248
                      C G   + +G+  V GG    +T
Sbjct: 67  RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 30/255 (11%), Positives = 53/255 (20%), Gaps = 47/255 (18%)

Query: 97  RPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS 156
            P   LP  P+  ++           + +      DA       P        ++  T  
Sbjct: 12  GPTIDLPIVPAAAAI-----EPTSGRVLMWSSYRNDAFGGS---PGGITLTSSWDPSTGI 63

Query: 157 WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM 216
                  ++    F        N  IV  GG+                 YD + + W+  
Sbjct: 64  VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----------KKTSLYDSSSDSWIPG 113

Query: 217 DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDH 276
            +M   R           G  + +GG                             K  + 
Sbjct: 114 PDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFE---------------------KNGEV 151

Query: 277 DDGDRGTWREVGDMWDEWERSRIGKIVVMEDENR-------GRPEVFMLDKFDILRYDMG 329
                 TW  + +       +   + +   D +        G              Y  G
Sbjct: 152 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG 211

Query: 330 LNRWLKETTIPEIRP 344
                        R 
Sbjct: 212 SGDVKSAGKRQSNRG 226

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 48/309 (15%), Positives = 77/309 (24%), Gaps = 51/309 (16%)

Query: 119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL 178
           +G  IY  GG                     +N    +W R+A +  PR   A      +
Sbjct: 3   VGRLIYTAGGYFRQ----------SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV---V 49

Query: 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFW 238
             ++ A GG  +S  G   S           +    +   +PR R G             
Sbjct: 50  GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 109

Query: 239 VMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDG------------------- 279
             G    +         DE++  A ++  +        +                     
Sbjct: 110 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 169

Query: 280 DRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTI 339
                           RS  G  V+                  + RYD+    W     +
Sbjct: 170 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 229

Query: 340 PEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI 399
              R     LG  V  G +YV+    G D +    S          ++ Y P   TW  +
Sbjct: 230 KHRRSA---LGITVHQGRIYVLG---GYDGHTFLDS----------VECYDPDTDTWSEV 273

Query: 400 FTKPPFPQP 408
                    
Sbjct: 274 ---TRMTSG 279

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 8e-07
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 18/124 (14%)

Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162
                           L   IY  GG     +          +S  R++  T +W  +AP
Sbjct: 178 MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL---------NSVERYDVETETWTFVAP 228

Query: 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222
           M   R +      +   +I V GG   H+          SVE YD   + W  +  M   
Sbjct: 229 MKHRRSALGITVHQ--GRIYVLGGYDGHTFL-------DSVECYDPDTDTWSEVTRMTSG 279

Query: 223 RAGC 226
           R+G 
Sbjct: 280 RSGV 283

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 9/71 (12%)

Query: 103 PCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162
              P  +             IY+LGG          D     DS   ++  T +W  +  
Sbjct: 225 FVAPMKHRRSALGITVHQGRIYVLGGY---------DGHTFLDSVECYDPDTDTWSEVTR 275

Query: 163 MISPRGSFACA 173
           M S R     A
Sbjct: 276 MTSGRSGVGVA 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.62
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	97.51
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.02
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.03
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.42
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.19
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	93.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	93.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.52
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.58
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	91.35
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	91.33
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	90.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	89.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	89.46
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	88.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	88.45
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	88.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.6
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	87.06
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	85.81
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	85.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	85.51
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	84.7
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	80.28

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-40  Score=302.04  Aligned_cols=278  Identities=20%  Similarity=0.314  Sum_probs=225.1

Q ss_pred             CceEEEeCC--CCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650           71 SDLLCIFPQ--DPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAF  148 (421)
Q Consensus        71 ~~~~~~~g~--~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~  148 (421)
                      .+.||+|||  ...++++++||+.+++|+.+++||.+     |.+|++++++++|||+||......     ....+++++
T Consensus         4 g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~-----R~~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~~   73 (288)
T d1zgka1           4 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP-----RSGLAGCVVGGLLYAVGGRNNSPD-----GNTDSSALD   73 (288)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC-----CBSCEEEEETTEEEEECCEEEETT-----EEEECCCEE
T ss_pred             CCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCc-----cceeEEEEECCEEEEEeCcccCCC-----Cccccchhh
Confidence            567999998  34677899999999999999999965     899999999999999999754221     113567999


Q ss_pred             EEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeE
Q 014650          149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVG  228 (421)
Q Consensus       149 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~  228 (421)
                      +||+.+++|+.+++||.+|..|++++++  ++||++||..       .....+.++.||+.++.|...+.++.+|..+++
T Consensus        74 ~yd~~~~~w~~~~~~p~~r~~~~~~~~~--~~i~~~gg~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  144 (288)
T d1zgka1          74 CYNPMTNQWSPCAPMSVPRNRIGVGVID--GHIYAVGGSH-------GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGV  144 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBTCEEEEET--TEEEEECCEE-------TTEECCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             hcccccccccccccccceecceeccccc--eeeEEeccee-------cccccceeeeeccccCcccccccccccccccee
Confidence            9999999999999999999999999999  9999999975       345678899999999999999999999988877


Q ss_pred             EEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc----ccCeEEE
Q 014650          229 FVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS----RIGKIVV  304 (421)
Q Consensus       229 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~----~~g~i~v  304 (421)
                      ++..  +++|++||.+....          ..+++.||+.+            ++|...+..+......    ..+++++
T Consensus       145 ~~~~--~~~~~~GG~~~~~~----------~~~~~~~d~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~i  200 (288)
T d1zgka1         145 AVLN--RLLYAVGGFDGTNR----------LNSAECYYPER------------NEWRMITAMNTIRSGAGVCVLHNCIYA  200 (288)
T ss_dssp             EEET--TEEEEECCBCSSCB----------CCCEEEEETTT------------TEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             eeee--ecceEecCcccccc----------cceEEEeeccc------------cccccccccccccccccccceeeeEEE
Confidence            6665  89999999865432          22344555544            5999988766532211    2378999


Q ss_pred             EccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceee
Q 014650          305 MEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCL  384 (421)
Q Consensus       305 ~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  384 (421)
                      +||. ++..     .....+.||..+++|+.++++|.   +|..++++.++++|||+||.++...+             +
T Consensus       201 ~GG~-~~~~-----~~~~~~~~~~~~~~~~~~~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~-------------~  258 (288)
T d1zgka1         201 AGGY-DGQD-----QLNSVERYDVETETWTFVAPMKH---RRSALGITVHQGRIYVLGGYDGHTFL-------------D  258 (288)
T ss_dssp             ECCB-CSSS-----BCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCBCSSCBC-------------C
T ss_pred             ecCc-cccc-----cccceeeeeecceeeecccCccC---cccceEEEEECCEEEEEecCCCCeec-------------c
Confidence            9987 3332     23688999999999999988876   57889999999999999998765533             6


Q ss_pred             EEEEEeCCcceeeEecccCCCCCCCCccceeE
Q 014650          385 FIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIM  416 (421)
Q Consensus       385 ~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~  416 (421)
                      ++++||+++++|+.++++   |.+|.+|+++|
T Consensus       259 ~v~~yd~~~~~W~~~~~~---p~~R~~~~~~~  287 (288)
T d1zgka1         259 SVECYDPDTDTWSEVTRM---TSGRSGVGVAV  287 (288)
T ss_dssp             EEEEEETTTTEEEEEEEC---SSCCBSCEEEE
T ss_pred             eEEEEECCCCEEEECCCC---CCCcEeEEEEE
Confidence            899999999999999765   45578887665

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=234.64  Aligned_cols=256  Identities=21%  Similarity=0.293  Sum_probs=202.0

Q ss_pred             chhHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCC-------CCCCccEEEeCCCCcEEECCCCCCCCCCCCC
Q 014650           39 SHQSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQD-------PSISSPFLFDAANRACRPLPPLPCNPSTYSL  111 (421)
Q Consensus        39 ~~~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r  111 (421)
                      ..+..+....++|..+...|. .+..+.....+..+|++||.       ...++++.||+.+++|+.+++||.+     |
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~-----r   92 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP-----R   92 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC-----C
T ss_pred             ceEEEEECCCCeEEECCCCCC-ccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccce-----e
Confidence            344556777889998865443 22222344557788998882       2467899999999999999999966     9


Q ss_pred             cceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCcccc
Q 014650          112 CNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHS  191 (421)
Q Consensus       112 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~  191 (421)
                      .+|++++.+++||++||....         ...+.++.||+.+++|...+.++.+|..|+++++.  +++|++||.+   
T Consensus        93 ~~~~~~~~~~~i~~~gg~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~~~GG~~---  158 (288)
T d1zgka1          93 NRIGVGVIDGHIYAVGGSHGC---------IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN--RLLYAVGGFD---  158 (288)
T ss_dssp             BTCEEEEETTEEEEECCEETT---------EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBC---
T ss_pred             cceeccccceeeEEecceecc---------cccceeeeeccccCccccccccccccccceeeeee--ecceEecCcc---
Confidence            999999999999999998543         25678999999999999999999999999999998  9999999985   


Q ss_pred             ccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccC
Q 014650          192 LFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKK  271 (421)
Q Consensus       192 ~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~  271 (421)
                          ......+++.||+.+++|...+.++.++..++++...  ++||++||.+...          ..++.+.||..++ 
T Consensus       159 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~GG~~~~~----------~~~~~~~~~~~~~-  221 (288)
T d1zgka1         159 ----GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLH--NCIYAAGGYDGQD----------QLNSVERYDVETE-  221 (288)
T ss_dssp             ----SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBCSSS----------BCCCEEEEETTTT-
T ss_pred             ----cccccceEEEeecccccccccccccccccccccccee--eeEEEecCccccc----------cccceeeeeecce-
Confidence                3455778999999999999999999888777666555  8999999987653          2334555655555 


Q ss_pred             CcCCCCCCCCCCceEecCccccccccc------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCC
Q 014650          272 KTDDHDDGDRGTWREVGDMWDEWERSR------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPC  345 (421)
Q Consensus       272 ~~~~~yd~~~~~W~~~~~~~~~~~~~~------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~  345 (421)
                                 +|+.+++++.+  |..      .++||++||. ++..     ..+++++||+++++|+++.+||.   +
T Consensus       222 -----------~~~~~~~~p~~--r~~~~~~~~~~~l~v~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~---~  279 (288)
T d1zgka1         222 -----------TWTFVAPMKHR--RSALGITVHQGRIYVLGGY-DGHT-----FLDSVECYDPDTDTWSEVTRMTS---G  279 (288)
T ss_dssp             -----------EEEECCCCSSC--CBSCEEEEETTEEEEECCB-CSSC-----BCCEEEEEETTTTEEEEEEECSS---C
T ss_pred             -----------eeecccCccCc--ccceEEEEECCEEEEEecC-CCCe-----ecceEEEEECCCCEEEECCCCCC---C
Confidence                       99999887763  332      3799999997 3332     23689999999999999999998   4


Q ss_pred             CCceEEEE
Q 014650          346 KKPLGFIV  353 (421)
Q Consensus       346 r~~~~~~~  353 (421)
                      |.++++++
T Consensus       280 R~~~~~~~  287 (288)
T d1zgka1         280 RSGVGVAV  287 (288)
T ss_dssp             CBSCEEEE
T ss_pred             cEeEEEEE
Confidence            68877664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=2e-29  Score=240.41  Aligned_cols=284  Identities=13%  Similarity=0.093  Sum_probs=185.7

Q ss_pred             CCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCcc--
Q 014650           91 AANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRG--  168 (421)
Q Consensus        91 ~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~--  168 (421)
                      |..++|...+++|..     +.+++++..+++||||||...+...   .....+..+++||+.+++|+.+++++.+|.  
T Consensus         6 p~~g~W~~~~~~p~~-----~~~~a~~~~~gkv~v~GG~~~~~~~---~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~   77 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIV-----PAAAAIEPTSGRVLMWSSYRNDAFG---GSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF   77 (387)
T ss_dssp             TTSCEEEEEEECSSC-----CSEEEEETTTTEEEEEEECCCTTTC---SCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred             CCCCccCCcCCCCcc-----ccEEEEEeeCCEEEEEEeecCcccC---CCCCceeEEEEEECCCCcEeecCCCCCCcccc
Confidence            677899999888853     5555666668999999998543210   112234568999999999999988877754  


Q ss_pred             ceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCcc
Q 014650          169 SFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRT  248 (421)
Q Consensus       169 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~  248 (421)
                      +++.+++.+ ++||++||.+           .+++++||+.+++|+.+++|+.+|..|.++++.+ +++|++||......
T Consensus        78 ~~~~~~~~~-g~i~v~Gg~~-----------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d-G~v~v~GG~~~~~~  144 (387)
T d1k3ia3          78 CPGISMDGN-GQIVVTGGND-----------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGV  144 (387)
T ss_dssp             SCEEEECTT-SCEEEECSSS-----------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSS
T ss_pred             eeEEEEecC-CcEEEeecCC-----------CcceeEecCccCcccccccccccccccceeeecC-Cceeeecccccccc
Confidence            445555554 8999999864           3568999999999999999999999988877776 89999999755431


Q ss_pred             ccccccceeeechheehhhhcc--------------------------------------------CCcCCCCCCCCCCc
Q 014650          249 ISGVLPVDEYYRDAVVMQLKKK--------------------------------------------KKTDDHDDGDRGTW  284 (421)
Q Consensus       249 ~~~~~~~~~~~~~~~~yd~~~~--------------------------------------------~~~~~~yd~~~~~W  284 (421)
                               ..++++.||+.++                                            ....+.||+.+..|
T Consensus       145 ---------~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         145 ---------FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             ---------CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ---------ccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                     2223344444333                                            00013455555555


Q ss_pred             eEecCcccccc-----c--------cccCeEEEEccccCCCceE--EEecCCceEEEeCCCCceeEecccCCCCCCCCce
Q 014650          285 REVGDMWDEWE-----R--------SRIGKIVVMEDENRGRPEV--FMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPL  349 (421)
Q Consensus       285 ~~~~~~~~~~~-----~--------~~~g~i~v~GG~~~g~~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~  349 (421)
                      .....++....     +        ...++++++||...+....  .......++.++...+.|+.+..||.   +|..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~r~~~  292 (387)
T d1k3ia3         216 KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFH  292 (387)
T ss_dssp             EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSC
T ss_pred             eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccc---ccccc
Confidence            55443322100     0        0125678888763111100  00001123334555667888888887   45666


Q ss_pred             EEEEe-CCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650          350 GFIVL-DGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC  417 (421)
Q Consensus       350 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~  417 (421)
                      +++.+ +++|||+||.......       .......++++|||++++|+.++++   +.+|..|+++++
T Consensus       293 ~~~~~~dg~i~v~GG~~~~~~~-------~~~~~~~~ve~Ydp~~~~W~~~~~~---~~~R~~Hs~a~l  351 (387)
T d1k3ia3         293 TSVVLPDGSTFITGGQRRGIPF-------EDSTPVFTPEIYVPEQDTFYKQNPN---SIVRVYHSISLL  351 (387)
T ss_dssp             EEEECTTSCEEEECCBSBCCTT-------CCCSBCCCCEEEEGGGTEEEECCCC---SSCCCTTEEEEE
T ss_pred             eeeeccCCeEEEECCcccCccC-------CCCcEeceEEEEECCCCeEEECCCC---CCcccceEEEEE
Confidence            66666 7899999997644321       1123345789999999999998654   556788887765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=3.8e-28  Score=231.56  Aligned_cols=292  Identities=15%  Similarity=0.145  Sum_probs=189.1

Q ss_pred             hHhHHhhhcCCcccccccccccCCceEEEeCCCC---------CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE
Q 014650           48 CRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP---------SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS  118 (421)
Q Consensus        48 ~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~  118 (421)
                      ..+|...+..|.. +.+.........|++|||..         .....+.|||.+++|..+++++.+.   .+..++.+.
T Consensus         8 ~g~W~~~~~~p~~-~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~---~~~~~~~~~   83 (387)
T d1k3ia3           8 LGRWGPTIDLPIV-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH---DMFCPGISM   83 (387)
T ss_dssp             SCEEEEEEECSSC-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---CCSSCEEEE
T ss_pred             CCccCCcCCCCcc-ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc---ccceeEEEE
Confidence            3467766555542 22333344556777777621         1123678999999999887777651   122333333


Q ss_pred             -eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCC
Q 014650          119 -LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAG  197 (421)
Q Consensus       119 -~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  197 (421)
                       .+++||++||.+             .+++++||+.+++|..+++|+.+|..|+++++.+ +++|++||..      ...
T Consensus        84 ~~~g~i~v~Gg~~-------------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d-G~v~v~GG~~------~~~  143 (387)
T d1k3ia3          84 DGNGQIVVTGGND-------------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSW------SGG  143 (387)
T ss_dssp             CTTSCEEEECSSS-------------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCC------CSS
T ss_pred             ecCCcEEEeecCC-------------CcceeEecCccCcccccccccccccccceeeecC-Cceeeecccc------ccc
Confidence             378999999853             4578999999999999999999999999999865 8999999975      245


Q ss_pred             CccceEEEEECCCCceEECCCCCCCCC-----------------------------------------------------
Q 014650          198 SRISSVERYDVAKNEWVSMDEMPRFRA-----------------------------------------------------  224 (421)
Q Consensus       198 ~~~~~~~~yd~~t~~W~~~~~~~~~r~-----------------------------------------------------  224 (421)
                      ...+++++||+.+++|+.++.++.+..                                                     
T Consensus       144 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  223 (387)
T d1k3ia3         144 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS  223 (387)
T ss_dssp             SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred             cccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecccccc
Confidence            667899999999999998765432210                                                     


Q ss_pred             ----------CeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc
Q 014650          225 ----------GCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW  294 (421)
Q Consensus       225 ----------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~  294 (421)
                                .++.+....++++|++||..........    .   ....++.       +.++...+.|+.++.|+.+ 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~----~---~~~~~~~-------~~~~~~~~~~~~~~~~p~~-  288 (387)
T d1k3ia3         224 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT----T---NAHIITL-------GEPGTSPNTVFASNGLYFA-  288 (387)
T ss_dssp             TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC----C---CEEEEEC-------CSTTSCCEEEECTTCCSSC-
T ss_pred             CcccCcccccccEEEeeccCCceEEEEeccCCCCCccc----c---eeecccc-------cccccCCCceeeccccccc-
Confidence                      0001111112677788776443221110    0   0000111       2245555689999888864 


Q ss_pred             cccc-------cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEe--CCeEEEEEeec
Q 014650          295 ERSR-------IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVL--DGELYVMTVLK  365 (421)
Q Consensus       295 ~~~~-------~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~  365 (421)
                       |..       .|+||++||...+....-......+++||+++++|+++++|+.   +|..|+++.+  +++|||+||..
T Consensus       289 -r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~---~R~~Hs~a~l~~dG~v~v~GG~~  364 (387)
T d1k3ia3         289 -RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI---VRVYHSISLLLPDGRVFNGGGGL  364 (387)
T ss_dssp             -CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS---CCCTTEEEEECTTSCEEEEECCC
T ss_pred             -cccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCC---cccceEEEEECCCCEEEEEeCCC
Confidence             322       3799999997311110000122578999999999999999987   4677776665  88999999953


Q ss_pred             CCCccccccccccccceeeEEEEEeCC
Q 014650          366 GSDLNETRRSQQHKRAGCLFIQIYHPR  392 (421)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~v~~yd~~  392 (421)
                      ....          .....++++|||.
T Consensus       365 ~~~~----------~~~~~~~e~y~Pp  381 (387)
T d1k3ia3         365 CGDC----------TTNHFDAQIFTPN  381 (387)
T ss_dssp             CTTC----------SCCCCEEEEEECG
T ss_pred             cCCC----------CcccceEEEEcch
Confidence            3221          1223579999874

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.3e-08  Score=59.59  Aligned_cols=39  Identities=18%  Similarity=0.474  Sum_probs=36.3

Q ss_pred             CCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcc
Q 014650           22 PGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTL   60 (421)
Q Consensus        22 ~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~   60 (421)
                      ..||+|++.+||++|+..++.+++.|||+|+.+..++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            479999999999999999999999999999999988764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.4e-05  Score=58.77  Aligned_cols=45  Identities=27%  Similarity=0.432  Sum_probs=40.6

Q ss_pred             cccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           18 VTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        18 ~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      .-.+..||+||+..||++|+..++.++..||++|+.+..++.+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~   60 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR   60 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            345678999999999999999999999999999999999987654

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=1e-05  Score=59.23  Aligned_cols=40  Identities=15%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcC-Ccc
Q 014650           21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSS-RTL   60 (421)
Q Consensus        21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~-~~~   60 (421)
                      +..||+||+++||++|+..++.++..|||+|+.++.+ +.+
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            4579999999999999999999999999999998854 554

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00014  Score=54.73  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             ChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650           24 LPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF   62 (421)
Q Consensus        24 Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~   62 (421)
                      |+|||+..||++|+..++.++..|||+|+.++.++.+.+
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk   56 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            346999999999999999999999999999999887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.31  E-value=0.82  Score=39.90  Aligned_cols=146  Identities=11%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcc-eEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCe
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCN-FTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDS  146 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (421)
                      .....+.+.+.+   ..+..||..++++..+..+...     ... .+++.. ++..++.||.+              ..
T Consensus        17 ~dg~~la~~~~~---~~i~iw~~~~~~~~~~~~l~gH-----~~~V~~l~fsp~~~~l~s~s~D--------------~~   74 (371)
T d1k8kc_          17 KDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGTD--------------RN   74 (371)
T ss_dssp             TTSSEEEEECSS---SEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEETT--------------SC
T ss_pred             CCCCEEEEEeCC---CEEEEEECCCCCEEEEEEecCC-----CCCEEEEEECCCCCEEEEEECC--------------Ce
Confidence            344455444432   2477899888888776554321     111 223222 45555666642              35


Q ss_pred             EEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCe
Q 014650          147 AFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGC  226 (421)
Q Consensus       147 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~  226 (421)
                      +.+||..+++|.....+........++.+..+++.+++|+.++          .-.++.++.....+.........+...
T Consensus        75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~----------~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR----------VISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS----------SEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEeecccccccccccccccccccccccccccccceeecccC----------cceeeeeeccccccccccccccccccc
Confidence            8889999999887665544433344444432266666665431          223444555555554332222222223


Q ss_pred             eEEEEccCCeEEEEeccCCC
Q 014650          227 VGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       227 ~~~~~~~~~~iyv~GG~~~~  246 (421)
                      .++.+..++++++.|+.++.
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccceeccccCcE
Confidence            34444333677777776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.03  E-value=0.87  Score=38.71  Aligned_cols=79  Identities=10%  Similarity=-0.061  Sum_probs=46.2

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      ..++.||+.+++-... .+|..      ....+..-++.+++...                +.+.+||+.+.+++.+...
T Consensus        40 ~~I~r~d~~~g~~~~~-~~~~~------~~~i~~~~dg~l~va~~----------------~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          40 RELHELHLASGRKTVH-ALPFM------GSALAKISDSKQLIASD----------------DGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             TEEEEEETTTTEEEEE-ECSSC------EEEEEEEETTEEEEEET----------------TEEEEEETTTCCEEEEECS
T ss_pred             CEEEEEECCCCeEEEE-ECCCC------cEEEEEecCCCEEEEEe----------------CccEEeecccceeeEEeee
Confidence            4588999998765543 33421      22222234677776532                3589999999999887655


Q ss_pred             CCC--ccceEEEEEccCCEEEEEc
Q 014650          164 ISP--RGSFACAAVRSLNQIIVAG  185 (421)
Q Consensus       164 ~~~--r~~~~~~~~~~~~~iyv~G  185 (421)
                      ...  .....-..++.+|.+|+..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEe
Confidence            332  2222333333337877754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.89  E-value=0.26  Score=43.34  Aligned_cols=100  Identities=8%  Similarity=0.085  Sum_probs=58.4

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++..+++|+.              -..|.+||..++++..+..+..-...-.++.+..+++.++.||.+           
T Consensus        18 dg~~la~~~~--------------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----------   72 (371)
T d1k8kc_          18 DRTQIAICPN--------------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----------   72 (371)
T ss_dssp             TSSEEEEECS--------------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----------
T ss_pred             CCCEEEEEeC--------------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----------
Confidence            5566667763              246889999998888776654222222223332225666666653           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                       ..+.++|..+++|.....+........++.+..+++..+.|+.++
T Consensus        73 -~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          73 -RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             -SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -CeEEEEeecccccccccccccccccccccccccccccceeecccC
Confidence             248889999999886654443333334444433366666666544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.42  E-value=1.2  Score=37.71  Aligned_cols=69  Identities=13%  Similarity=0.021  Sum_probs=36.1

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++..++.|+.+              ..+.+||..+.+......+......-.++.+..+++.++++|.+          .
T Consensus        69 ~g~~latg~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~----------~  124 (311)
T d1nr0a1          69 SGYYCASGDVH--------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG----------R  124 (311)
T ss_dssp             TSSEEEEEETT--------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC----------S
T ss_pred             CCCeEeccccC--------------ceEeeeeeeccccccccccccccCcccccccccccccccccccc----------c
Confidence            56666777752              46889998887654333332211122233333225666665532          1


Q ss_pred             cceEEEEECCCCc
Q 014650          200 ISSVERYDVAKNE  212 (421)
Q Consensus       200 ~~~~~~yd~~t~~  212 (421)
                      ...+.+++.++.+
T Consensus       125 ~~~~~v~~~~~~~  137 (311)
T d1nr0a1         125 ERFGHVFLFDTGT  137 (311)
T ss_dssp             SCSEEEEETTTCC
T ss_pred             ccccccccccccc
Confidence            2235667776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.19  E-value=1.2  Score=36.71  Aligned_cols=112  Identities=9%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             cccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCC
Q 014650           67 FNSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPS  144 (421)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~  144 (421)
                      .....+++|+.+..  ...+..||..+.+-...  ++..     ...+.++..  ++.+++.+..              .
T Consensus        39 ~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------~   95 (301)
T d1l0qa2          39 ISPDGTKVYVANAH--SNDVSIIDTATNNVIAT--VPAG-----SSPQGVAVSPDGKQVYVTNMA--------------S   95 (301)
T ss_dssp             ECTTSSEEEEEEGG--GTEEEEEETTTTEEEEE--EECS-----SSEEEEEECTTSSEEEEEETT--------------T
T ss_pred             EeCCCCEEEEEECC--CCEEEEEECCCCceeee--eecc-----ccccccccccccccccccccc--------------c
Confidence            34456677765542  23588999988765432  2221     122344433  3455554432              2


Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS  215 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~  215 (421)
                      ..+..+|..+.+....-..  ......++...++..+++.+..+            ..+..++..+.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dg~~~~~~~~~~------------~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVIN  152 (301)
T ss_dssp             TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEE
T ss_pred             ceeeecccccceeeeeccc--cccceEEEeecCCCeeeeeeccc------------cceeeeeccccceee
Confidence            4577888887764433222  22222333332213455554432            246677887776443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=93.96  E-value=1.4  Score=36.41  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             eEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650           73 LLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRF  150 (421)
Q Consensus        73 ~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y  150 (421)
                      ++|+.+..  .+.+..+|+.+.+....-++..       .-+.++..  +++||+.++.              ...+.+|
T Consensus         3 ~~yV~~~~--~~~v~v~D~~t~~~~~~i~~g~-------~p~~va~spdG~~l~v~~~~--------------~~~i~v~   59 (301)
T d1l0qa2           3 FAYIANSE--SDNISVIDVTSNKVTATIPVGS-------NPMGAVISPDGTKVYVANAH--------------SNDVSII   59 (301)
T ss_dssp             EEEEEETT--TTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSSEEEEEEGG--------------GTEEEEE
T ss_pred             EEEEEECC--CCEEEEEECCCCeEEEEEECCC-------CceEEEEeCCCCEEEEEECC--------------CCEEEEE
Confidence            56776543  3358899999988765323321       22344443  4578877653              2569999


Q ss_pred             eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE
Q 014650          151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS  215 (421)
Q Consensus       151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~  215 (421)
                      |..+.+-.  ..++....-+.++...+...+++.+..            ...+.+++..+++...
T Consensus        60 d~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          60 DTATNNVI--ATVPAGSSPQGVAVSPDGKQVYVTNMA------------SSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             ETTTTEEE--EEEECSSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEE
T ss_pred             ECCCCcee--eeeeccccccccccccccccccccccc------------cceeeecccccceeee
Confidence            99887633  223333323444444331345554432            2346678888776443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=1.6  Score=37.13  Aligned_cols=98  Identities=11%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++..++.|+.              -..+.+||....+.+....+...........+..++.+++.++.+           
T Consensus       108 dg~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------  162 (337)
T d1gxra_         108 DGCTLIVGGE--------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----------  162 (337)
T ss_dssp             TSSEEEEEES--------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----------
T ss_pred             CCCEEEEeec--------------ccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            5566667764              246888998877665554443332222333333225566666543           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                       ..+..+|..+++-........  ....++.+..++...+.|+.++
T Consensus       163 -~~i~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~~~~~~~d~  205 (337)
T d1gxra_         163 -GNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             -SCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             -ccccccccccccccccccccc--cccccccccccccccccccccc
Confidence             247788888776332211111  1122333333356666676544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.52  E-value=2.7  Score=35.77  Aligned_cols=98  Identities=13%  Similarity=0.044  Sum_probs=53.6

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+..-              ....++++||.++....... +....-++++...+ +++||+.-.+        ...
T Consensus        50 ~G~Ly~~D~--------------~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~d-G~l~va~~~~--------~~~  105 (319)
T d2dg1a1          50 QGQLFLLDV--------------FEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKD-GRLFVCYLGD--------FKS  105 (319)
T ss_dssp             TSCEEEEET--------------TTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTT-SCEEEEECTT--------SSS
T ss_pred             CCCEEEEEC--------------CCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCC-CCEEEEecCC--------Ccc
Confidence            467998742              23579999999876544321 11112234444333 8999985321        123


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEe
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMG  241 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~G  241 (421)
                      ...+..++..+.....+..-.........+++..++.||+-.
T Consensus       106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd  147 (319)
T d2dg1a1         106 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD  147 (319)
T ss_dssp             CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred             ceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecc
Confidence            455778888887755433222222223334444448888853

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.06  E-value=3.1  Score=35.36  Aligned_cols=84  Identities=10%  Similarity=-0.072  Sum_probs=45.2

Q ss_pred             CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650           84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA  161 (421)
Q Consensus        84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~  161 (421)
                      ..++.+|+.++.+..........  ..-..+.++..  ++.+|+..+.               ..+.++|+.+.....+.
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~--~~g~P~Gl~~~~dg~~l~vad~~---------------~~i~~~~~~g~~~~~~~  108 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNG--YGGIPAGCQCDRDANQLFVADMR---------------LGLLVVQTDGTFEEIAK  108 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETT--EECCEEEEEECSSSSEEEEEETT---------------TEEEEEETTSCEEECCS
T ss_pred             CEEEEEECCCCcEEEEECCcccc--CCCcceeEEEeCCCCEEEEEECC---------------CeEEEEeCCCcEEEEEe
Confidence            45899999998876653211100  00112344444  4578876542               45888998877655443


Q ss_pred             ccCCCc---cceEEEEEccCCEEEEEc
Q 014650          162 PMISPR---GSFACAAVRSLNQIIVAG  185 (421)
Q Consensus       162 ~~~~~r---~~~~~~~~~~~~~iyv~G  185 (421)
                      ....++   .-..+++.. ++.||+..
T Consensus       109 ~~~~g~~~~~pndl~~d~-~G~lyvtd  134 (314)
T d1pjxa_         109 KDSEGRRMQGCNDCAFDY-EGNLWITA  134 (314)
T ss_dssp             BCTTSCBCBCCCEEEECT-TSCEEEEE
T ss_pred             ccccccccCCCcEEEECC-CCCEEEec
Confidence            332222   112233333 38999863

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.82  E-value=3.3  Score=35.18  Aligned_cols=102  Identities=17%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCC--cc-ceEEEEEccCCEEEEEcCCccccccCCC
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISP--RG-SFACAAVRSLNQIIVAGGGSRHSLFGAA  196 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~--r~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~  196 (421)
                      ++.||+.........       .....+++||+.+..+.........  -. -+++++..+.+.+|+..+.         
T Consensus        28 dG~ly~~~~~~~~~~-------~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~---------   91 (314)
T d1pjxa_          28 NGDFYIVAPEVEVNG-------KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---------   91 (314)
T ss_dssp             TSCEEEEETTCEETT-------EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---------
T ss_pred             CCCEEEEECcccccc-------ccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC---------
Confidence            678998754321100       1235799999999987765432111  11 1234443321467877653         


Q ss_pred             CCccceEEEEECCCCceEECCCCCCCCC--CeeEEEEccCCeEEEEe
Q 014650          197 GSRISSVERYDVAKNEWVSMDEMPRFRA--GCVGFVAEESGEFWVMG  241 (421)
Q Consensus       197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~--~~~~~~~~~~~~iyv~G  241 (421)
                          ..+.++|+.....+.+......+.  ..-.+++..++.||+..
T Consensus        92 ----~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          92 ----LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             ----TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             ----CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence                237788988776554433222211  12234455458999863

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.81  E-value=1.4  Score=36.59  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ++++++|+.+            ..+.+||..+.+...+..+.... ...++.+..+++.++.|+.++
T Consensus       148 ~~~l~~g~~d------------g~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         148 KQFVAVGGQD------------SKVHVYKLSGASVSEVKTIVHPA-EITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             SCEEEEEETT------------SEEEEEEEETTEEEEEEEEECSS-CEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccc------------ccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            6677777753            34788888877655432222111 223344433356666666554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.58  E-value=3.3  Score=34.76  Aligned_cols=79  Identities=13%  Similarity=0.044  Sum_probs=45.9

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+++||+.+++-+... ++..  -.+++...+ +.+++...              +.+..||+.+++++.+........
T Consensus        40 ~~I~r~d~~~g~~~~~~-~~~~--~~~i~~~~d-g~l~va~~--------------~gl~~~d~~tg~~~~l~~~~~~~~  101 (295)
T d2ghsa1          40 RELHELHLASGRKTVHA-LPFM--GSALAKISD-SKQLIASD--------------DGLFLRDTATGVLTLHAELESDLP  101 (295)
T ss_dssp             TEEEEEETTTTEEEEEE-CSSC--EEEEEEEET-TEEEEEET--------------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred             CEEEEEECCCCeEEEEE-CCCC--cEEEEEecC-CCEEEEEe--------------CccEEeecccceeeEEeeeecCCC
Confidence            56999999998754332 3322  123333332 77776533              138899999999888755432221


Q ss_pred             --CeeEEEEccCCeEEEEe
Q 014650          225 --GCVGFVAEESGEFWVMG  241 (421)
Q Consensus       225 --~~~~~~~~~~~~iyv~G  241 (421)
                        ..-...+..+|.||+-.
T Consensus       102 ~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEE
T ss_pred             cccceeeEECCCCCEEEEe
Confidence              12233444448888754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=3.6  Score=34.74  Aligned_cols=126  Identities=11%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .+..||....+......+...   . ..-..++.. ++.+++.++.              ...+..||..+.+-......
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~~~l~s~~~--------------d~~i~~~~~~~~~~~~~~~~  181 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSS---A-PACYALAISPDSKVCFSCCS--------------DGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECS---S-SCEEEEEECTTSSEEEEEET--------------TSCEEEEETTTTEEEEEECC
T ss_pred             ccccccccccccccccccccc---c-cccccccccccccccccccc--------------cccccccccccccccccccc
Confidence            466788766554433333221   0 011122222 4555555553              23578888877653322211


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEecc
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                      .  ...-.+..+..++..+++|+.+            ..+.+||..+.+=...-....   ...++.+..++...+.|+.
T Consensus       182 ~--~~~v~~l~~s~~~~~~~~~~~d------------~~v~i~d~~~~~~~~~~~~~~---~i~~l~~~~~~~~l~~~~~  244 (337)
T d1gxra_         182 H--TDGASCIDISNDGTKLWTGGLD------------NTVRSWDLREGRQLQQHDFTS---QIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             C--SSCEEEEEECTTSSEEEEEETT------------SEEEEEETTTTEEEEEEECSS---CEEEEEECTTSSEEEEEET
T ss_pred             c--cccccccccccccccccccccc------------ccccccccccceeeccccccc---ceEEEEEcccccccceecc
Confidence            1  1111222232215666666643            347788887765222111111   1223333323566666665


Q ss_pred             CC
Q 014650          244 GD  245 (421)
Q Consensus       244 ~~  245 (421)
                      ++
T Consensus       245 d~  246 (337)
T d1gxra_         245 SS  246 (337)
T ss_dssp             TS
T ss_pred             cc
Confidence            54

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=91.33  E-value=3.4  Score=34.43  Aligned_cols=67  Identities=10%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             cCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCe
Q 014650           69 SQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDS  146 (421)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (421)
                      ..++++++.+.+   +.+..||..+++-...-.++..     ..-.+++..  +.++||.+..              ...
T Consensus         6 ~~~~~l~~~~~~---~~v~v~D~~t~~~~~t~~~~~~-----~~p~~l~~spDG~~l~v~~~~--------------~~~   63 (346)
T d1jmxb_           6 AGHEYMIVTNYP---NNLHVVDVASDTVYKSCVMPDK-----FGPGTAMMAPDNRTAYVLNNH--------------YGD   63 (346)
T ss_dssp             TTCEEEEEEETT---TEEEEEETTTTEEEEEEECSSC-----CSSCEEEECTTSSEEEEEETT--------------TTE
T ss_pred             CCCcEEEEEcCC---CEEEEEECCCCCEEEEEEcCCC-----CCcceEEECCCCCEEEEEECC--------------CCc
Confidence            344555554443   4688999999876543234422     222334433  4567877653              357


Q ss_pred             EEEEeCccCce
Q 014650          147 AFRFNFLTFSW  157 (421)
Q Consensus       147 v~~yd~~t~~W  157 (421)
                      +..||..+.+=
T Consensus        64 v~~~d~~t~~~   74 (346)
T d1jmxb_          64 IYGIDLDTCKN   74 (346)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEeCccCee
Confidence            89999988653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.88  E-value=3.7  Score=34.02  Aligned_cols=120  Identities=13%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650           72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFR  149 (421)
Q Consensus        72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~  149 (421)
                      +++++.+.   .+.+..+|..+.+-...-+.+..    ...-.+++..  +.++|+.|+.              ...+.+
T Consensus         2 ~~~vt~~~---d~~v~v~D~~s~~~~~~i~~~~~----~~~~~~i~~spDg~~l~v~~~~--------------~~~v~v   60 (337)
T d1pbyb_           2 DYILAPAR---PDKLVVIDTEKMAVDKVITIADA----GPTPMVPMVAPGGRIAYATVNK--------------SESLVK   60 (337)
T ss_dssp             EEEEEEET---TTEEEEEETTTTEEEEEEECTTC----TTCCCCEEECTTSSEEEEEETT--------------TTEEEE
T ss_pred             eEEEEEcC---CCEEEEEECCCCeEEEEEECCCC----CCCccEEEECCCCCEEEEEECC--------------CCeEEE
Confidence            34455444   25688999998765432122211    1111223332  4568887653              357999


Q ss_pred             EeCccCceeeccccCCC----ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCce
Q 014650          150 FNFLTFSWERIAPMISP----RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEW  213 (421)
Q Consensus       150 yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W  213 (421)
                      ||..+.+....-..+.+    ...+.++...+...+|+.+...... ..........+..+|..+.+=
T Consensus        61 ~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE-LTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC-SSCEEECCCEEEEEETTTTEE
T ss_pred             EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce-eeeccccccceeeccccCCeE
Confidence            99998876543322222    1112233322214555554321110 000111234567788887763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=5.2  Score=34.07  Aligned_cols=87  Identities=15%  Similarity=0.097  Sum_probs=41.3

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC-CCCCC--
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM-DEMPR--  221 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~--  221 (421)
                      ..+..||..+..-.........  ...++....++.+++.|+.+            ..+.+||..+...... .....  
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~~~~~~  250 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLD------------RAVRVWDSETGFLVERLDSENESG  250 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETT------------SCEEEEETTTCCEEEEEC------
T ss_pred             eeeeeeeccccccccccccccc--cccccccCCCCCeEEEEcCC------------CeEEEeecccCccceeeccccccc
Confidence            4678888877654433322211  12222222125677777653            2377888888765432 11111  


Q ss_pred             --CCCCeeEEEEccCCeEEEEeccCC
Q 014650          222 --FRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       222 --~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                        ......++.+..++...+.|+.++
T Consensus       251 ~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         251 TGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCC
Confidence              111122333433356666666554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=4.8  Score=33.13  Aligned_cols=83  Identities=11%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r  223 (421)
                      ..+.+||..+.+-...  +......-.+....  +.+++.|+.+            ..+.+||....+-.. +.......
T Consensus       197 g~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~s~s~d------------~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         197 TSIRVWDVETGNCIHT--LTGHQSLTSGMELK--DNILVSGNAD------------STVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             SCEEEEETTTCCEEEE--ECCCCSCEEEEEEE--TTEEEEEETT------------SCEEEEETTTCCEEEEECSTTSCS
T ss_pred             CeEEEeecccceeeeE--ecccccceeEEecC--CCEEEEEcCC------------CEEEEEecccccccccccccceee
Confidence            3577888776553222  11111222333445  5566666653            247889988766433 22222222


Q ss_pred             CCeeEEEEccCCeEEEEeccCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ....++.. + +.+++.|+.++
T Consensus       261 ~~~~~~~~-~-~~~~~s~s~Dg  280 (342)
T d2ovrb2         261 SAVTCLQF-N-KNFVITSSDDG  280 (342)
T ss_dssp             SCEEEEEE-C-SSEEEEEETTS
T ss_pred             eceeeccc-C-CCeeEEEcCCC
Confidence            22233333 3 56777777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.82  E-value=5.8  Score=33.18  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650          146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG  225 (421)
Q Consensus       146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~  225 (421)
                      .+.+||..+..=.++  +..-...-.++.+..++++++.|+.+            ..+.+||..+........+......
T Consensus        39 ~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~  104 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVH------------GNVRIWDTTQTTHILKTTIPVFSGP  104 (311)
T ss_dssp             EEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETT------------SEEEEEESSSTTCCEEEEEECSSSC
T ss_pred             EEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccC------------ceEeeeeeeccccccccccccccCc
Confidence            577888766432221  11112223444443337777788764            2488899888764322122211112


Q ss_pred             eeEEEEccCCeEEEEeccC
Q 014650          226 CVGFVAEESGEFWVMGGYG  244 (421)
Q Consensus       226 ~~~~~~~~~~~iyv~GG~~  244 (421)
                      ..++.+..++++++.+|.+
T Consensus       105 v~~v~~s~d~~~l~~~~~~  123 (311)
T d1nr0a1         105 VKDISWDSESKRIAAVGEG  123 (311)
T ss_dssp             EEEEEECTTSCEEEEEECC
T ss_pred             ccccccccccccccccccc
Confidence            2344444336666666643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.45  E-value=5.8  Score=32.78  Aligned_cols=83  Identities=8%  Similarity=0.055  Sum_probs=39.8

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA  224 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~  224 (421)
                      ..+..||..+.+........... ......... +..++.|+.+            ..+.+||..+..-...-....  .
T Consensus       181 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~h~--~  244 (355)
T d1nexb2         181 NTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHE-RKRCISASMD------------TTIRIWDLENGELMYTLQGHT--A  244 (355)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSC-EEEEEEETT-TTEEEEEETT------------SCEEEEETTTCCEEEEECCCS--S
T ss_pred             ceeeeeecccccceeeeeccccc-ccccccccc-ceeeeccccc------------ceEEeeecccccccccccccc--c
Confidence            35778888776543332211122 122222221 5556666643            237788888776433211111  1


Q ss_pred             CeeEEEEccCCeEEEEeccCC
Q 014650          225 GCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       225 ~~~~~~~~~~~~iyv~GG~~~  245 (421)
                      ...++...  ++..+.|+.++
T Consensus       245 ~v~~~~~~--~~~l~~~~~dg  263 (355)
T d1nexb2         245 LVGLLRLS--DKFLVSAAADG  263 (355)
T ss_dssp             CCCEEEEC--SSEEEEECTTS
T ss_pred             cccccccc--cceeeeeeccc
Confidence            12234443  55667777655

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.16  E-value=5.3  Score=33.99  Aligned_cols=96  Identities=11%  Similarity=0.088  Sum_probs=44.2

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.+++.|+.+              ..+.+||..+.+......-.... -..+....+ +...+.|+.+           
T Consensus       132 ~~~~l~s~~~d--------------g~v~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~-~~~~~~~~~~-----------  184 (388)
T d1erja_         132 DGKFLATGAED--------------RLIRIWDIENRKIVMILQGHEQD-IYSLDYFPS-GDKLVSGSGD-----------  184 (388)
T ss_dssp             TSSEEEEEETT--------------SCEEEEETTTTEEEEEECCCSSC-EEEEEECTT-SSEEEEEETT-----------
T ss_pred             CCCcceecccc--------------ccccccccccccccccccccccc-ccccccccc-cccccccccc-----------
Confidence            45666677642              35788888776654332211111 112222221 4445555432           


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD  245 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~  245 (421)
                       ..+.++|..+..-..........  ........++.+.+.|+.++
T Consensus       185 -~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~  227 (388)
T d1erja_         185 -RTVRIWDLRTGQCSLTLSIEDGV--TTVAVSPGDGKYIAAGSLDR  227 (388)
T ss_dssp             -SEEEEEETTTTEEEEEEECSSCE--EEEEECSTTCCEEEEEETTS
T ss_pred             -eeeeeeecccccccccccccccc--ccccccCCCCCeEEEEcCCC
Confidence             24777888776543322211111  11222222256666666554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.60  E-value=6.3  Score=32.85  Aligned_cols=94  Identities=10%  Similarity=0.049  Sum_probs=48.0

Q ss_pred             CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650          120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR  199 (421)
Q Consensus       120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  199 (421)
                      ++.||+....              ...|+++|+.... +.+...+.   ......+..++.+|+++-..         ..
T Consensus        38 dG~l~vt~~~--------------~~~I~~i~p~g~~-~~~~~~~~---~~~gla~~~dG~l~v~~~~~---------~~   90 (302)
T d2p4oa1          38 DGTIFVTNHE--------------VGEIVSITPDGNQ-QIHATVEG---KVSGLAFTSNGDLVATGWNA---------DS   90 (302)
T ss_dssp             TSCEEEEETT--------------TTEEEEECTTCCE-EEEEECSS---EEEEEEECTTSCEEEEEECT---------TS
T ss_pred             CCCEEEEeCC--------------CCEEEEEeCCCCE-EEEEcCCC---CcceEEEcCCCCeEEEecCC---------ce
Confidence            6789987552              3579999988653 34443332   22333343338899886421         11


Q ss_pred             cceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650          200 ISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG  242 (421)
Q Consensus       200 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG  242 (421)
                      + .....+....+-..+...+.... ...++...++.+|+...
T Consensus        91 ~-~~~~~~~~~~~~~~~~~~~~~~~-~n~i~~~~~g~~~v~~~  131 (302)
T d2p4oa1          91 I-PVVSLVKSDGTVETLLTLPDAIF-LNGITPLSDTQYLTADS  131 (302)
T ss_dssp             C-EEEEEECTTSCEEEEEECTTCSC-EEEEEESSSSEEEEEET
T ss_pred             E-EEEEecccccceeeccccCCccc-cceeEEccCCCEEeecc
Confidence            1 12223333444444433333222 33455544488887643

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=5.7  Score=31.11  Aligned_cols=62  Identities=18%  Similarity=0.162  Sum_probs=35.7

Q ss_pred             EEEecCCceEEEeCCCCceeE-----ecc-cCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEE
Q 014650          315 VFMLDKFDILRYDMGLNRWLK-----ETT-IPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQI  388 (421)
Q Consensus       315 ~~~~~~~~v~~yd~~~~~W~~-----~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~  388 (421)
                      +|.......++||..+++-..     +.. .+.. ..+..+ +...++++|++-|                    ...+.
T Consensus       119 ~Y~FkG~~y~ry~~~~~~vd~gyPk~I~~~w~Gv-p~~iDA-Af~~~g~~YfFkg--------------------~~y~r  176 (195)
T d1su3a2         119 TYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGI-GHKVDA-VFMKDGFFYFFHG--------------------TRQYK  176 (195)
T ss_dssp             EEEEETTEEEEEETTTTEECSSCSEEHHHHSTTS-CSCCSE-EEEETTEEEEEET--------------------TEEEE
T ss_pred             EEEEeCCEEEEEeccCccccCCcccccccccCCC-CCCccE-EEEECCeEEEEEC--------------------CEEEE
Confidence            344444577889887764321     211 1111 122333 3456999999988                    36888


Q ss_pred             EeCCcceeeE
Q 014650          389 YHPRKKTWRY  398 (421)
Q Consensus       389 yd~~~~~W~~  398 (421)
                      ||+.+++=..
T Consensus       177 ~~~~~~~v~~  186 (195)
T d1su3a2         177 FDPKTKRILT  186 (195)
T ss_dssp             EETTTTEEEE
T ss_pred             EeCCcCEEEe
Confidence            9887765433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=85.81  E-value=4.5  Score=33.62  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=30.2

Q ss_pred             CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEE-ccCCeEEEEeccCC
Q 014650          179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVA-EESGEFWVMGGYGD  245 (421)
Q Consensus       179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~  245 (421)
                      ++.+++++.+            +.+.+||.++++=...-.++.... ..++++ .++..+|+.+..++
T Consensus         8 ~~~l~~~~~~------------~~v~v~D~~t~~~~~t~~~~~~~~-p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           8 HEYMIVTNYP------------NNLHVVDVASDTVYKSCVMPDKFG-PGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CEEEEEEETT------------TEEEEEETTTTEEEEEEECSSCCS-SCEEEECTTSSEEEEEETTTT
T ss_pred             CcEEEEEcCC------------CEEEEEECCCCCEEEEEEcCCCCC-cceEEECCCCCEEEEEECCCC
Confidence            6666776653            468999999987433223333222 223333 33256788765543

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.53  E-value=6.7  Score=30.52  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=48.8

Q ss_pred             EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceee------ccccCCCccceEEEEEccCCEEEEEcCCc
Q 014650          115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWER------IAPMISPRGSFACAAVRSLNQIIVAGGGS  188 (421)
Q Consensus       115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~------~~~~~~~r~~~~~~~~~~~~~iyv~GG~~  188 (421)
                      +++.+++.+|+|-|.                .+|+++.....+..      -+.+|... ..+ .....++++|++-|..
T Consensus        13 Av~~~~g~~y~Fkg~----------------~~wr~~~~~~~~~p~~i~~~w~~lp~~I-DAA-f~~~~~~~~yffkg~~   74 (192)
T d1pexa_          13 AITSLRGETMIFKDR----------------FFWRLHPQQVDAELFLTKSFWPELPNRI-DAA-YEHPSHDLIFIFRGRK   74 (192)
T ss_dssp             EEEEETTEEEEEETT----------------EEEEECSSSSCCEEEEHHHHCTTSCSSC-CEE-EEETTTTEEEEEETTE
T ss_pred             EEEEcCCeEEEEECC----------------EEEEEcCCCCCCcccchhhhCcCCCCcc-cce-EEEcCCCEEEEEcCCE
Confidence            566789999999884                35555443322211      12233221 222 2221117888887742


Q ss_pred             cccccCCCCCccceEEEEECCCCce---EECCCC--CCCCCC-eeEEEEccCCeEEEEecc
Q 014650          189 RHSLFGAAGSRISSVERYDVAKNEW---VSMDEM--PRFRAG-CVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       189 ~~~~~~~~~~~~~~~~~yd~~t~~W---~~~~~~--~~~r~~-~~~~~~~~~~~iyv~GG~  243 (421)
                                    .++|+..+...   +.+...  |.+-.. -+++...+++++|++-|.
T Consensus        75 --------------~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~  121 (192)
T d1pexa_          75 --------------FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN  121 (192)
T ss_dssp             --------------EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred             --------------EEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC
Confidence                          56776544332   123331  222122 233443445899999774

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.51  E-value=8.4  Score=31.59  Aligned_cols=125  Identities=6%  Similarity=-0.032  Sum_probs=69.2

Q ss_pred             ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650           85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM  163 (421)
Q Consensus        85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~  163 (421)
                      .+..+++....+..+..-..      .....+++. ++.+|+....              ...+++|++..+.-..+...
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~------~~p~~~avd~~G~i~v~~~~--------------~~~~~~~~~~g~~~~~~g~~  153 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATIL------QHPRGVTVDNKGRIIVVECK--------------VMRVIIFDQNGNVLHKFGCS  153 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTC------SCEEEEEECTTSCEEEEETT--------------TTEEEEECTTSCEEEEEECT
T ss_pred             ccccccccccceeecCCCcc------cccceeccccCCcEEEEeec--------------cceeeEeccCCceeeccccc
Confidence            46677776665555422111      122344443 5678887552              35688888876554444322


Q ss_pred             CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEecc
Q 014650          164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY  243 (421)
Q Consensus       164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~  243 (421)
                      ........+++-. ++.+|+....            ...+.+||+..+...+++.-. ......++++..++.|||....
T Consensus       154 ~~~~~~~~i~~d~-~g~i~v~d~~------------~~~V~~~d~~G~~~~~~g~~g-~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         154 KHLEFPNGVVVND-KQEIFISDNR------------AHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             TTCSSEEEEEECS-SSEEEEEEGG------------GTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECS
T ss_pred             ccccccceeeecc-ceeEEeeecc------------ccceeeeecCCceeeeecccc-cccCCcccccccCCeEEEEECC
Confidence            2223333344433 3789998664            346889998876655554211 1112345666555889998644

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.70  E-value=4.8  Score=32.91  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=46.7

Q ss_pred             CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC-CCCCCCC
Q 014650          145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM-DEMPRFR  223 (421)
Q Consensus       145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r  223 (421)
                      ..+..||..+.+...+..+.... .-.++.+..++..++.|+.+            ..+.+||..++..... ..+....
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d------------~~i~~~~~~~~~~~~~~~~~~~h~  224 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPA-EITSVAFSNNGAFLVATDQS------------RKVIPYSVANNFELAHTNSWTFHT  224 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSS-CEEEEEECTTSSEEEEEETT------------SCEEEEEGGGTTEESCCCCCCCCS
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccc------------cccccccccccccccccccccccc
Confidence            46888888777655443332221 22233332225566666643            2488899888765432 2332222


Q ss_pred             CCeeEEEEccCCeEEEEeccCCC
Q 014650          224 AGCVGFVAEESGEFWVMGGYGDS  246 (421)
Q Consensus       224 ~~~~~~~~~~~~~iyv~GG~~~~  246 (421)
                      ....++.+..++++.+.|+.++.
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccceEEEcCCCE
Confidence            22334444333777778876653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.28  E-value=12  Score=30.94  Aligned_cols=64  Identities=11%  Similarity=-0.015  Sum_probs=32.6

Q ss_pred             CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcce
Q 014650          321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKT  395 (421)
Q Consensus       321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~  395 (421)
                      ..++.++..+.+...+.......   .......-+++.+++++......        ........+.+||..+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~la~~~~~~~~~--------~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3         107 FEIMTVDLETGKPTVIERSREAM---ITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             SEEEEEETTTCCEEEEEECSSSC---CCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTE
T ss_pred             cccccccccccceeeeeeccccc---ccchhhccceeeeeeeccccccc--------eeeccccceeeeccccCc
Confidence            46778888887766554433311   12223344666666655433221        112223456677766654